Citrus Sinensis ID: 028813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEcccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNPEYDYLFKLLLIgdsgvgksCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYdvtdqesfNNVKQWLNEIDRYASDNVNkllvgnkcdltanKVVSYETAKAFadeigipfmetsakdsTNVEQAFMAMAASIKDrmasqpsmnnarpptvqikgqpvaqksgccst
Flexible Loop (DISEMBL)
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGktiklqiwdtagqERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNArpptvqikgqpvaqksgccst
Low Complexity Region (SEG)
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Disordered region (IsUnstruct)
****YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM*******************************************************
Disordered Region (DISOPRED)
*NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI****************************SGCCS*
Disordered Region (DISEMBL)
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ***************
Disordered Region (DISPRO)
*NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
P28188	203	Ras-related protein RABD2	yes	no	1.0	1.0	0.916	1e-110
Q05737	203	GTP-binding protein YPTM2	N/A	no	1.0	1.0	0.911	1e-109
P40392	202	Ras-related protein RIC1	no	no	0.995	1.0	0.871	1e-105
Q9SEH3	202	Ras-related protein RABD2	no	no	0.995	1.0	0.866	1e-104
Q9FPJ4	202	Ras-related protein RABD2	no	no	0.995	1.0	0.866	1e-103
Q39571	203	GTP-binding protein YPTC1	N/A	no	0.990	0.990	0.826	6e-95
Q6NYB7	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.796	6e-93
P62821	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.796	6e-93
P62820	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.796	6e-93
P62822	205	Ras-related protein Rab-1	yes	no	0.990	0.980	0.796	6e-93

>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 198/203 (97%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ N
Sbjct: 121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPVAQK+GCCST
Sbjct: 181 NARPPTVQIRGQPVAQKNGCCST 203

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).
Arabidopsis thaliana (taxid: 3702)

>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/203 (91%), Positives = 196/203 (96%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLTANKVV+ ETAKAFADE+GIPFMETSAK++TNV+QAFMAMAASIKDRMASQP+  
Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAA 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARP TVQI+GQPV QK+ CCS+
Sbjct: 181 NARPATVQIRGQPVNQKTSCCSS 203

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/202 (87%), Positives = 190/202 (94%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDL  N+VVSYE  KA ADEIGIPF+ETSAKD+TNVE+AFM MA  IK+RMASQP+ N
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCS 202
            ++P TVQ++GQPVAQ+S CCS
Sbjct: 181 ASKPATVQMRGQPVAQQSSCCS 202

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1 SV=1

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/203 (86%), Positives = 193/203 (95%), Gaps = 1/203 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+  
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-G 179

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
            ++PPTVQI+GQPV Q+SGCCS+
Sbjct: 180 GSKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/203 (86%), Positives = 192/203 (94%), Gaps = 1/203 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+  
Sbjct: 121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-G 179

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
            A+PPTVQI+GQPV Q+SGCCS+
Sbjct: 180 GAKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1

 Score =  346 bits (888), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/202 (82%), Positives = 179/202 (88%), Gaps = 1/202 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLT+ KVV Y  AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP   
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180

Query: 181 NARPPTVQIK-GQPVAQKSGCC 201
            A  P V+ + G+P+  KS  C
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSC 202

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3

 Score =  339 bits (870), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/201 (79%), Positives = 172/201 (85%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIKGQPVAQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Rattus norvegicus (taxid: 10116)

>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3

 Score =  339 bits (870), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/201 (79%), Positives = 172/201 (85%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIKGQPVAQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3

 Score =  339 bits (870), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/201 (79%), Positives = 172/201 (85%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIKGQPVAQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3

 Score =  339 bits (870), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/201 (79%), Positives = 172/201 (85%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 181 NARPPTVQIKGQPVAQKSGCC 201
            A    V+I+  PV Q  G C
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224074217	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.945	1e-112
224063625	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.940	1e-111
255581964	203	protein with unknown function [Ricinus c	1.0	1.0	0.940	1e-111
390979747	203	small GTPase [Hevea brasiliensis]	1.0	1.0	0.935	1e-110
356568583	202	PREDICTED: ras-related protein RABD2a-li	0.995	1.0	0.945	1e-110
255539911	203	protein with unknown function [Ricinus c	1.0	1.0	0.935	1e-110
297814341	203	ATRAB1B [Arabidopsis lyrata subsp. lyrat	1.0	1.0	0.926	1e-110
225454983	203	PREDICTED: GTP-binding protein YPTM2 [Vi	1.0	1.0	0.931	1e-110
224136446	203	predicted protein [Populus trichocarpa]	1.0	1.0	0.931	1e-110
359806422	202	uncharacterized protein LOC100783333 [Gl	0.995	1.0	0.935	1e-110

>gi|224074217|ref|XP_002304305.1| predicted protein [Populus trichocarpa] gi|118485751|gb|ABK94725.1| unknown [Populus trichocarpa] gi|222841737|gb|EEE79284.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/203 (94%), Positives = 201/203 (99%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063625|ref|XP_002301234.1| predicted protein [Populus trichocarpa] gi|222842960|gb|EEE80507.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/203 (94%), Positives = 199/203 (98%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLTANKVVSYETAKAFADEIGIPFMETSAKD+TNVEQAFMAMAA+IKDRMASQP+MN
Sbjct: 121 NKSDLTANKVVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAAAIKDRMASQPAMN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NA+P TVQ++GQPV QK GCCS+
Sbjct: 181 NAKPSTVQLRGQPVEQKGGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581964|ref|XP_002531780.1| protein with unknown function [Ricinus communis] gi|223528573|gb|EEF30594.1| protein with unknown function [Ricinus communis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/203 (94%), Positives = 200/203 (98%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MN
Sbjct: 121 NKNDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390979747|gb|AFM30910.1| small GTPase [Hevea brasiliensis]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 200/203 (98%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVE+AFMAMAA IK+RMASQP+ N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEEAFMAMAADIKNRMASQPAAN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568583|ref|XP_003552490.1| PREDICTED: ras-related protein RABD2a-like [Glycine max]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/203 (94%), Positives = 199/203 (98%), Gaps = 1/203 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDL AN+ VSYETAKAFADEIGIPFMETSAKD+TNVEQAFMAMAASIKDRMASQP+ N
Sbjct: 121 NKCDLEANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPA-N 179

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPVAQK GCCS+
Sbjct: 180 NARPPTVQIRGQPVAQKGGCCSS 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539911|ref|XP_002511020.1| protein with unknown function [Ricinus communis] gi|223550135|gb|EEF51622.1| protein with unknown function [Ricinus communis]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 199/203 (98%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+ N
Sbjct: 121 NKSDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKNRMASQPAAN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QKSGCCS+
Sbjct: 181 NARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814341|ref|XP_002875054.1| ATRAB1B [Arabidopsis lyrata subsp. lyrata] gi|297320891|gb|EFH51313.1| ATRAB1B [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/203 (92%), Positives = 198/203 (97%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTVKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASD+VNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDSVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDL AN+ V YETAKAFADEIGIPFMETSAKD+TNVEQAFMAMAASIKDRMASQP+ N
Sbjct: 121 NKCDLAANRAVPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPAAN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QK+GCCS+
Sbjct: 181 NARPPTVQIRGQPVPQKNGCCSS 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454983|ref|XP_002281150.1| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera] gi|297744977|emb|CBI38569.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/203 (93%), Positives = 199/203 (98%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNQEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK RMASQP+MN
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKTRMASQPAMN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPP+VQ++GQPV QKSGCCS+
Sbjct: 181 NARPPSVQLQGQPVNQKSGCCSS 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136446|ref|XP_002326862.1| predicted protein [Populus trichocarpa] gi|118483707|gb|ABK93747.1| unknown [Populus trichocarpa] gi|222835177|gb|EEE73612.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/203 (93%), Positives = 197/203 (97%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK DLT+NKVVSYE AKAFADEIGIPFMETSAKD+TNVEQAFMAM+A+IKDRMASQP+MN
Sbjct: 121 NKSDLTSNKVVSYEQAKAFADEIGIPFMETSAKDATNVEQAFMAMSAAIKDRMASQPAMN 180

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NA+P TVQ KGQPV QK GCCS+
Sbjct: 181 NAKPSTVQFKGQPVEQKGGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806422|ref|NP_001241498.1| uncharacterized protein LOC100783333 [Glycine max] gi|255636244|gb|ACU18462.1| unknown [Glycine max]

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 200/203 (98%), Gaps = 1/203 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP +N
Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQP-VN 179

Query: 181 NARPPTVQIKGQPVAQKSGCCST 203
           NARPPTVQI+GQPV QK+GCCST
Sbjct: 180 NARPPTVQIRGQPVNQKAGCCST 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2205603	203	RA-5 "RAS 5" [Arabidopsis thal	1.0	1.0	0.916	8.2e-99
TAIR|locus:2129161	202	RAB1C "RAB GTPase homolog 1C"	0.995	1.0	0.866	4.3e-93
TAIR|locus:2171484	202	RAB1A "RAB GTPase homolog 1A"	0.995	1.0	0.866	3.9e-92
UNIPROTKB|F1NNL7	205	RAB1A "Uncharacterized protein	0.990	0.980	0.801	5.6e-84
UNIPROTKB|A1L528	205	RAB1A "RAB1A, member RAS oncog	0.990	0.980	0.797	1.5e-83
UNIPROTKB|F1Q0H3	250	RAB1A "Ras-related protein Rab	0.990	0.804	0.797	1.5e-83
UNIPROTKB|P62822	205	RAB1A "Ras-related protein Rab	0.990	0.980	0.797	1.5e-83
UNIPROTKB|P62820	205	RAB1A "Ras-related protein Rab	0.990	0.980	0.797	1.5e-83
UNIPROTKB|F2Z5U4	202	RAB1A "Ras-related protein Rab	0.990	0.995	0.797	1.5e-83
MGI|MGI:97842	205	Rab1 "RAB1, member RAS oncogen	0.990	0.980	0.797	1.5e-83

TAIR|locus:2205603 RA-5 "RAS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 186/203 (91%), Positives = 198/203 (97%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NK DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ N
Sbjct:   121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGN 180

Query:   181 NARPPTVQIKGQPVAQKSGCCST 203
             NARPPTVQI+GQPVAQK+GCCST
Sbjct:   181 NARPPTVQIRGQPVAQKNGCCST 203

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000139 "Golgi membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2129161 RAB1C "RAB GTPase homolog 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 176/203 (86%), Positives = 193/203 (95%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+  
Sbjct:   121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-G 179

Query:   181 NARPPTVQIKGQPVAQKSGCCST 203
              ++PPTVQI+GQPV Q+SGCCS+
Sbjct:   180 GSKPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2171484 RAB1A "RAB GTPase homolog 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 176/203 (86%), Positives = 192/203 (94%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NK DLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+  
Sbjct:   121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-G 179

Query:   181 NARPPTVQIKGQPVAQKSGCCST 203
              A+PPTVQI+GQPV Q+SGCCS+
Sbjct:   180 GAKPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|F1NNL7 RAB1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 162/202 (80%), Positives = 174/202 (86%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q SG CC
Sbjct:   184 GAEKSNVKIQSTPVKQSSGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|A1L528 RAB1A "RAB1A, member RAS oncogene family" [Bos taurus (taxid:9913)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1Q0H3 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:    49 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 108

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:   109 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 168

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   169 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 228

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   229 GAEKSNVKIQSTPVKQSGGGCC 250

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62822 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62820 RAB1A "Ras-related protein Rab-1A" [Homo sapiens (taxid:9606)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F2Z5U4 RAB1A "Ras-related protein Rab-1A" [Sus scrofa (taxid:9823)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 180

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   181 GAEKSNVKIQSTPVKQSGGGCC 202

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:97842 Rab1 "RAB1, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/202 (79%), Positives = 173/202 (85%)

Query:     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
             MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct:     4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query:    61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct:    64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query:   121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
             NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct:   124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query:   181 NARPPTVQIKGQPVAQKSG-CC 201
              A    V+I+  PV Q  G CC
Sbjct:   184 GAEKSNVKIQSTPVKQSGGGCC 205

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05974	RAB1A_LYMST	No assigned EC number	0.7772	0.9901	0.9804	N/A	no
P34140	RAB1B_DICDI	No assigned EC number	0.7093	0.9852	0.9708	no	no
Q9SEH3	RAD2C_ARATH	No assigned EC number	0.8669	0.9950	1.0	no	no
Q06AU7	RAB1B_PIG	No assigned EC number	0.7761	0.9852	0.9950	no	no
Q9TVU5	RAB1_THEPA	No assigned EC number	0.6096	0.9064	0.8363	yes	no
Q6NYB7	RAB1A_RAT	No assigned EC number	0.7960	0.9901	0.9804	yes	no
Q9D1G1	RAB1B_MOUSE	No assigned EC number	0.7761	0.9852	0.9950	no	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.9113	1.0	1.0	N/A	no
P16976	YPTM1_MAIZE	No assigned EC number	0.7115	1.0	0.9759	N/A	no
Q9ZRE2	RABD1_ARATH	No assigned EC number	0.7574	0.9901	0.9804	no	no
Q01890	YPT1_PHYIN	No assigned EC number	0.7611	0.9901	1.0	N/A	no
P40392	RIC1_ORYSJ	No assigned EC number	0.8712	0.9950	1.0	no	no
Q92928	RAB1C_HUMAN	No assigned EC number	0.7363	0.9852	0.9950	no	no
P28188	RAD2A_ARATH	No assigned EC number	0.9162	1.0	1.0	yes	no
Q9FPJ4	RAD2B_ARATH	No assigned EC number	0.8669	0.9950	1.0	no	no
Q9H0U4	RAB1B_HUMAN	No assigned EC number	0.7761	0.9852	0.9950	no	no
P11620	YPT1_SCHPO	No assigned EC number	0.7339	0.9901	0.9901	yes	no
P01123	YPT1_YEAST	No assigned EC number	0.6956	0.9852	0.9708	yes	no
Q39433	RB1BV_BETVU	No assigned EC number	0.5970	0.9802	0.9255	N/A	no
Q5RE13	RAB1B_PONAB	No assigned EC number	0.7761	0.9852	0.9950	no	no
P62820	RAB1A_HUMAN	No assigned EC number	0.7960	0.9901	0.9804	yes	no
P62821	RAB1A_MOUSE	No assigned EC number	0.7960	0.9901	0.9804	yes	no
P62822	RAB1A_CANFA	No assigned EC number	0.7960	0.9901	0.9804	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.5789	0.9802	0.9170	N/A	no
P34139	RAB1A_DICDI	No assigned EC number	0.7425	0.9901	0.9950	yes	no
P33723	YPT1_NEUCR	No assigned EC number	0.7389	0.9901	0.9901	N/A	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.5482	0.9704	0.9516	N/A	no
Q4R8X3	RAB1B_MACFA	No assigned EC number	0.7711	0.9852	0.9950	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.7920	0.9901	0.9950	N/A	no
Q2HJH2	RAB1B_BOVIN	No assigned EC number	0.7810	0.9852	0.9950	yes	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.8267	0.9901	0.9901	N/A	no
Q52NJ2	RAB1A_PIG	No assigned EC number	0.7910	0.9901	0.9804	yes	no
Q5KTJ6	RAB13_MESAU	No assigned EC number	0.545	0.9852	0.9852	N/A	no
P31584	YPTV1_VOLCA	No assigned EC number	0.8168	0.9901	0.9901	N/A	no
P10536	RAB1B_RAT	No assigned EC number	0.7711	0.9852	0.9950	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0194 SubName- Full=Putative uncharacterized protein; (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-127
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-111
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-103
pfam00071	162	pfam00071, Ras, Ras family	1e-100
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-96
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-83
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-82
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-79
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-76
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-75
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-70
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-68
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	5e-68
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-67
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-65
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-64
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-63
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-63
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-62
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-61
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-60
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-59
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-57
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-57
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-57
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-57
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-56
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-55
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-50
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-49
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-47
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-46
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-46
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	8e-43
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-41
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-40
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-39
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-39
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-38
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-37
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-37
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-37
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-36
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-36
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-36
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-36
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-35
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-35
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-34
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-34
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-33
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-33
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-32
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	7e-32
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-31
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-31
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-31
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-31
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-29
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-28
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-25
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-25
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-25
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-23
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-23
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-23
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	7e-22
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-21
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-21
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-20
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-20
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	9e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-19
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-18
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-17
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-16
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-15
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-14
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-13
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-12
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-12
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-11
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-11
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	4e-11
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-11
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-10
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-10
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-10
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-09
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-08
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-08
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-08
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-07
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-06
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-05
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	5e-04
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.002
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.002
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	0.003
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.003

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  354 bits (911), Expect = e-127
 Identities = 144/166 (86%), Positives = 153/166 (92%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           YLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             KVV Y  AK FADE+GIPF+ETSAK++TNVE+AFM MA  IK R
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  314 bits (808), Expect = e-111
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFKLLLIGDSGVGKSCLLLRF++DS+  S+ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT+SYYRGA GII+VYD+TD++SF N+K W+  ID +AS++V ++LVGNKCD+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
              +VVS E  +A A E GI F+ETSAK + NVE+AF+ +A  I  +
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  294 bits (756), Expect = e-103
 Identities = 104/164 (63%), Positives = 127/164 (77%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++LIGDSGVGKS LL RF D  + E Y STIGVDFK +T+E DGK +KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR+ITSSYYRGA G ++VYD+T++ESF N++ WL E+  YAS NV  +LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           + VS E A+AFA+E G+PF ETSAK +TNVE+AF  +A  I  R
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  285 bits (733), Expect = e-100
 Identities = 97/162 (59%), Positives = 122/162 (75%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD GVGKS LL+RF  + + E YI TIGVDF  +T+E DGKT+KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           FR +   YYRGA G ++VYD+T ++SF NVK+WL EI R+A +NV  +LVGNKCDL   +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 171
           VVS E  +A A E+G+PFMETSAK + NVE+AF  +A  I  
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  276 bits (709), Expect = 2e-96
 Identities = 100/158 (63%), Positives = 125/158 (79%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++LIGDSGVGK+ LLLRF D+ + E+Y STIGVDFK +T+E DGK +KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR+ITSSYYRGAHG I+VYDVT++ESF N+ +WLNE+  YA  N+  +LVGNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
           + VS E A+ FA E G+ F ETSAK   NV++AF ++A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  244 bits (626), Expect = 1e-83
 Identities = 93/164 (56%), Positives = 120/164 (73%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ DGKTIK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQER+R ITS+YYRGA G ++VYD+T + +F NV++WL E+  +A  N+  +LVGNK DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
              + V  E AKAFA++ G+ F+ETSA D TNVE+AF  +   I
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  243 bits (621), Expect = 1e-82
 Identities = 108/198 (54%), Positives = 137/198 (69%), Gaps = 2/198 (1%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFRTITS+YYRG HG+I+VYDVT+ ESF NVK+WL EI++   D+V K+LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ-NCDDVCKVLVGNKN 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNAR 183
           D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +        +    +
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLA-KQQQ 179

Query: 184 PPTVQIKGQPVAQKSGCC 201
                +   P   K    
Sbjct: 180 QQQNDVVKLPKNSKRKKR 197

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  233 bits (596), Expect = 3e-79
 Identities = 93/162 (57%), Positives = 120/162 (74%), Gaps = 2/162 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+LLIGDSGVGKS LLLRF DD++ E   STIGVDFK++TV  DGK +KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           RFRT+TSSYYRGA G+I+VYDVT +++F+N+  WLNE+D Y+ + +  K+LVGNK D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-E 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           N+ V+ E  + FA +  + F+ETSAK    V+QAF  +   I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  226 bits (577), Expect = 3e-76
 Identities = 92/168 (54%), Positives = 125/168 (74%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++++ N+  +L+GNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L + + VSYE  +AFA E G+ FMETSAK ++NVE+AF+  A  I D+
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  224 bits (573), Expect = 1e-75
 Identities = 89/162 (54%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+LFK++LIGDS VGK+C++ RF   ++ E   +TIGVDF ++T+E  GK +KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT SYYR A+G II YD+T + SF +V  W+ E+++Y + NV  LL+GNKCDL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 126 TANKVVSYETAKAFADEIGIPF-METSAKDSTNVEQAFMAMA 166
              + V +E A   A+  GI   +ETSAK+S+NVE+AF+ MA
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  212 bits (542), Expect = 2e-70
 Identities = 98/209 (46%), Positives = 141/209 (67%), Gaps = 9/209 (4%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWD
Sbjct: 8   EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK 
Sbjct: 68  TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKS 127

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-----KDRMASQPS 178
           DL   + V+ E  +A A++ G+ F+ETSA ++TNVE+AF  +   I     K  +A+Q +
Sbjct: 128 DLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEA 187

Query: 179 MNNARPP----TVQIKGQPVAQKSGCCST 203
             N+  P    T+ +       K GCCST
Sbjct: 188 AANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  207 bits (527), Expect = 3e-68
 Identities = 97/208 (46%), Positives = 130/208 (62%), Gaps = 11/208 (5%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCD
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM------ASQPS 178
           L   + VS E  + FA E G+ FME SAK + NVE+AF+  AA I  ++       S  S
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 179 MN-----NARPPTVQIKGQPVAQKSGCC 201
                   A P     +    +Q  GCC
Sbjct: 183 YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  205 bits (523), Expect = 5e-68
 Identities = 77/161 (47%), Positives = 105/161 (65%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GDS VGKS ++LRF  + + E+  STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+R++   YYRGA   I+VYD+T +ESF   K W+ E+  +   N+   L GNK DL + 
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E A+ +ADE G+ FMETSAK   NV + F  +A  +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  204 bits (520), Expect = 1e-67
 Identities = 87/165 (52%), Positives = 124/165 (75%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           ER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            +VVS E  +  AD++G  F E SAK++ NV+Q F  +   I D+
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  198 bits (504), Expect = 3e-65
 Identities = 86/166 (51%), Positives = 123/166 (74%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE  G+ IKLQIWD
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YA++ V  +LVGNK 
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + VS + A+ F+D   + ++ETSAK+S NVE+ F+ +A  +
Sbjct: 123 DLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  196 bits (499), Expect = 3e-64
 Identities = 96/196 (48%), Positives = 134/196 (68%), Gaps = 8/196 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           FK++L+GDSGVGK+CLL+RF D +++  S+I+T+G+ F  + V  DG  +KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           ERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTV 187
            +VV  E  +  A E G+PFMETSAK   NVE AF A+A  +K R   QP       P  
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPD-----EPKF 175

Query: 188 QIKGQPVAQK--SGCC 201
           +I+     QK  SGCC
Sbjct: 176 KIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  193 bits (492), Expect = 2e-63
 Identities = 83/163 (50%), Positives = 111/163 (68%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E +G+ IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           A + V+YE AK FADE G+ F+E SAK   NVE AF+  A  I
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  192 bits (490), Expect = 3e-63
 Identities = 82/161 (50%), Positives = 111/161 (68%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GK++KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++T SYYRGA G ++VYD+T +ESFN +  WL +    AS ++  +LVGNK DL  +
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V++  A  FA E G+ F+ETSA    NVE+AF+  A SI
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  190 bits (484), Expect = 4e-62
 Identities = 67/161 (41%), Positives = 107/161 (66%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+ +GD  VGK+ ++ RF  D++   Y +TIG+DF  +T+  D KT++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+++SF+N  +W++++     ++V  +LVGNK DL+  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E  +  A E    F+ETSAK   NV+Q F  +A ++
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  188 bits (480), Expect = 5e-61
 Identities = 79/177 (44%), Positives = 116/177 (65%), Gaps = 10/177 (5%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE-QDGKTIKLQIWDTA 65
           Y F+L++IGDS VGKS LL RF +  + E    T+GVDF  R +E + G  IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-----LLVG 120
           GQERFR+IT SYYR + G+++V+D+T++ESF +V  WL E    A  ++       +LVG
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEE----ARSHIQPHRPVFILVG 116

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
           +KCDL + + V+ E A+  A ++G+ ++ETSA+   NVE+AF  +   I +R+    
Sbjct: 117 HKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGE 173

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  184 bits (469), Expect = 6e-60
 Identities = 78/158 (49%), Positives = 114/158 (72%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           F+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  +++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA + V K+L+GNK D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
           + V  E     A E G+ F ETSA  + N++++F  + 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  184 bits (468), Expect = 3e-59
 Identities = 98/202 (48%), Positives = 123/202 (60%), Gaps = 5/202 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD  FK+LLIGDSGVGKS LL+ F   S +E    TIGVDFKI+ +   GK +KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASD-NVNKLLVGNK 122
           AGQERFRT+TSSYYR A GII+VYDVT +E+F N+   W  E++ Y+++ +  K+LVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD--RMASQPSMN 180
            D  + + VS E   A A E G  F+E SAK   NVEQ F  +A  I +   +  + S  
Sbjct: 130 VDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTA 189

Query: 181 NARPPTVQIKGQPVAQKSGCCS 202
             R    Q          GCCS
Sbjct: 190 VKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  178 bits (454), Expect = 1e-57
 Identities = 67/161 (41%), Positives = 103/161 (63%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK++L+G+  VGK+ L+LR+ ++ + E + ST    F  +TV   GK I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+  +   YYR A G I+VYD+TD +SF  VK+W+ E+ +   +N++ ++VGNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           +VVS   A+ +A  +G    ETSAK    +E+ F+++A  +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  177 bits (451), Expect = 4e-57
 Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 5/172 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCD 124
           RF+++  ++YRGA   ++VYDVT+ +SF ++  W +E    AS    +N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 125 LTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           L   + VS + A+ +    G IP+ ETSAK++ NV+QAF  +A    ++   
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  178 bits (453), Expect = 5e-57
 Identities = 82/165 (49%), Positives = 122/165 (73%), Gaps = 1/165 (0%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           F +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVGNK D   ++
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 130 VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
            ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  176 bits (449), Expect = 7e-57
 Identities = 79/167 (47%), Positives = 112/167 (67%), Gaps = 5/167 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FK+++IGDS VGK+CL  RF    + E   +TIGVDF+ RTVE DG+ IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 69  RFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLT 126
           RFR ++   YYR  H ++ VYDVT+  SF+++  W+ E ++++  + V ++LVGNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKD---STNVEQAFMAMAASIK 170
               V  + A+ FAD   +P  ETSAKD   + +VE  FM +A  +K
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  175 bits (446), Expect = 3e-56
 Identities = 73/180 (40%), Positives = 116/180 (64%), Gaps = 11/180 (6%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------G 54
           YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  +           
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 55  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDN 113
             + LQ+WDTAGQERFR++T++++R A G ++++D+T ++SF NV+ W++++  +A  +N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
            + +L+GNK DL   + VS   A+  AD+ GIP+ ETSA    NVE+A   +   I  RM
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  171 bits (437), Expect = 4e-55
 Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 2/154 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++G  GVGKS L +RF    ++E Y  TI  D   + +  DG+T  L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTAN 128
           F  +   Y R   G I+VY +T +ESF  +K    +I R    ++V  +LVGNKCDL   
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
           + VS E  +A A+E G PF+ETSAK + N+++ F
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELF 153

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  161 bits (410), Expect = 2e-50
 Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 8/201 (3%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTI-KLQIWDTAGQ 67
           FK+L+IGD GVGK+ ++ R+    + + Y +TIGVDF ++ +E D  T+ +LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----LLVGNKC 123
           ERF  +T  YY+GA G IIV+DVT   +F  V +W  ++D   +    +    LL+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 124 DL-TANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMN 180
           DL         E    F  E G   + ETSAK++ N+E+A   +  +I K+    Q    
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 181 NARPPTVQIKGQPVAQKSGCC 201
           +        +    ++   CC
Sbjct: 181 DEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  158 bits (400), Expect = 8e-49
 Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 19/217 (8%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +   FK++++GD GVGK+ LL R   D + E Y  TIG     +T+E   + IKLQ+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKC 123
           AGQE +R++   YYRGA+GI+IVYD T +ES + + + WL E+   A D+V  LLVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 124 DL------------TANKVVSYETAKAFADE---IGIPFMETSAKDST--NVEQAFMAMA 166
           DL              N+ V        A          +ETSAK  T  NV + F  + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 167 ASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSGCCS 202
             + + +          +   +    +  A  S  C 
Sbjct: 182 RKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCV 218

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  153 bits (388), Expect = 2e-47
 Identities = 78/181 (43%), Positives = 112/181 (61%), Gaps = 9/181 (4%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYL K LL+GDS VGK  +L    D S    Y   +G+D+K  T+  DG+ +KLQ+WDT
Sbjct: 3   YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           +GQ RF TI  SY RGA GII+VYD+T++ SF+ + +W+ EID +A   V K+LVGN+  
Sbjct: 63  SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLH 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARP 184
           L   + V+ E A+A+A+  G+ F E S   + N+ ++F  +A     R+     M + RP
Sbjct: 122 LAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA-----RIV---LMRHGRP 173

Query: 185 P 185
           P
Sbjct: 174 P 174

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  149 bits (379), Expect = 3e-46
 Identities = 66/165 (40%), Positives = 98/165 (59%), Gaps = 2/165 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E DG+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY +TD++SF  + ++  +I R    D+V  +LVGNKCDL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            +VVS E  K  A + G PF+ETSAK+  NV++AF  +   I+  
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  149 bits (379), Expect = 4e-46
 Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E DG+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
            F  +   Y R   G ++VY +TD++SF  +K++  +I R    D+V  +LVGNKCDL +
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            +VVS E  K  A + G PF+ETSAK+  NV++AF  +   I+
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  141 bits (356), Expect = 8e-43
 Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 6/162 (3%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNK---LLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA          +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 124 DLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 164
           D+   + VS E A+A+  + G  P+ ETSAKD+TNV  AF  
Sbjct: 125 DIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  135 bits (343), Expect = 8e-41
 Identities = 50/165 (30%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++ +G+SGVGKSC++ R+ +  ++  Y+ TIG+D+ ++ V    K +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-----ASDNVNKLLVGNKCD 124
           +  + + +Y+   G+++VYDVTD++SF  +  WL E+ +        +N+  ++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           LT ++ VS +  + +A+  G  + ETSA     V + F  + +SI
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  133 bits (336), Expect = 9e-40
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 3/160 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE--QDGKTIKLQIWDTAGQ 67
           K++++G+  VGKS ++ RF    + + Y  TIGVDF  + +   Q  + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           E F  IT +YYRGA   I+V+  TD+ESF  ++ W  +++    D +  +LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLLD 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167
             V++ E A+A A  + +P   TS KD  NV + F  +A 
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  132 bits (335), Expect = 1e-39
 Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++  Y  TI  D   +  E DG+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            F  +   Y R   G ++V+ VTD+ SF  V ++  +I R    D    +LVGNK DL  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS E  +  A ++ IP++ETSAKD  NV++AF  +   I+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  132 bits (334), Expect = 2e-39
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD  VGK+CLL+ +  + +   Y+ T+  D     V  DGK + L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK  W  EI  Y   NV  +LVG K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRDD 119

Query: 126 --------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                      K ++ E  +  A EIG + +ME SA     +++ F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  128 bits (324), Expect = 5e-38
 Identities = 65/163 (39%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G  GVGKS L L+F  D ++E Y  T   D   + V  DG+ ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
            +  I  +Y+R   G ++V+ +TD ESF  + ++  +I R    DNV  LLVGNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS E A   A++ G+ ++ETSAK   NV++ F  +   I+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  127 bits (322), Expect = 1e-37
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI  D   + V  DG+T  L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ +  ++SF ++  +  +I R   SD+V  +LVGNKCDL A
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL-A 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS    +  A   GIP++ETSAK    VE+AF  +   I+
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  127 bits (321), Expect = 1e-37
 Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 2/156 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   ++IE Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
           +F ++   Y +   G I+VY + +Q++F ++K   ++I R    + V  +LVGNK DL +
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 163
            + VS    +A A+E G PFMETSAK  T V + F 
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA 156

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  126 bits (318), Expect = 7e-37
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 16/166 (9%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           L+++GD  VGK+CLL+ +  +++ E Y+ T+  ++    VE DGK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  RTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK 129
             +    Y      +I + V    SF NVK +W  E+  +   NV  +LVG K DL  +K
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLDLRNDK 118

Query: 130 V------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                        V+YE  +A A  IG + ++E SA     V + F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  124 bits (312), Expect = 3e-36
 Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GDS VGKS L+ RF  D Y    +ST  +       + +GKTI +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           F+T+ +SYY  AH  I+V+DVT + ++ N+ +W  E+  Y    +  ++V NK DL  + 
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPSV 120

Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM-AMAASIK 170
               +    FA++  +P    SA D TNV + F  A+  ++ 
Sbjct: 121 T---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  124 bits (312), Expect = 3e-36
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI  D   + +E D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q+SFN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 128 NKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 169
            +VVS E  +  A + G  PF+ETSAK   NV++ F  +   I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  124 bits (312), Expect = 3e-36
 Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 3/161 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD  VGK+CL+ RF  D + ++Y +TIGVDF++   E  G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDLTAN 128
           F+ I S+YYRGA  IIIV+D+TD  S  + +QWL + +      +V   LVG K DL++ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 129 KVVSYETAKA--FADEIGIPFMETSAKDSTNVEQAFMAMAA 167
              +     A   A E+   +   SA    NV   F  +A+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  124 bits (312), Expect = 3e-36
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
            K++++GD  VGKS LL R   +   I  Y      ++    +E+DGKT K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL 125
           E +  I   YYR     + V+D+         + +    EI  +A   V  +LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
              K +    A  FA   G P +  SA+   N++ AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  122 bits (308), Expect = 2e-35
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 18/193 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ ++G   VGKS L ++F +  ++ESY  TI   F  + +   G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTAN 128
           +  +   Y  G HG I+VY VT ++SF  VK   ++I D    ++V  +LVGNK DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 188
           + VS E  K  A+  G  F+E+SAK++ NVE+AF  +   I+        + N       
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIE-------KVEN------- 167

Query: 189 IKGQPVAQKSGCC 201
               P  QKS C 
Sbjct: 168 --PLPPGQKSKCS 178

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  121 bits (306), Expect = 9e-35
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 4/165 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
            K++++GD   GK+ L+ RFA + + +SY  TIG+DF  R +   G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCD 124
           +    +   Y  GA  + +VYD+T+ +SF N++ WL+ + +   ++  K   +LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L  N+ V+ E    FA E  +  +  SAK    V   F  +AA +
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  121 bits (304), Expect = 1e-34
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           K++++G   VGK+ L+ R+    ++   Y +TIG  F  + +    + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+  ++  YYRGA   I+ YD+TD  SF   K W+ E+ +   ++    L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIEQ 120

Query: 129 ----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARP 184
               + V +   + FADEI     ETS+K   NV++ F  +A     R  +Q +      
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKG-- 178

Query: 185 PTVQIKGQPVAQKSGCC 201
             V +  +  +    CC
Sbjct: 179 --VDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  119 bits (300), Expect = 3e-34
 Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 3/156 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F  + +IESY  TI   ++ + VE DG+   L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G ++VY VT + S N + +   ++ R   SDNV  +LVGNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 128 NKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           ++ VS E   + + + G +PF ETSA+  TNV++ F
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  118 bits (297), Expect = 1e-33
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 28/192 (14%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK--IRTVE-QDGKTIKLQIW 62
           D   K++++GD G GK+CLL+ +A  S+ E Y+ T+   F+  + T++  +GK I+L +W
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALW 57

Query: 63  DTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLL 118
           DTAGQE   R R ++   Y     I+I Y V +  S +NV+ +W  E++ +       +L
Sbjct: 58  DTAGQEDYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC-PGTPIVL 113

Query: 119 VGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MA 164
           VG K DL  +K             V+ E  ++ A  IG + ++E SAK   NV++ F  A
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 165 MAASIKDRMASQ 176
           +  ++     + 
Sbjct: 174 INVALSKSGRAA 185

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  117 bits (294), Expect = 2e-33
 Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 2/162 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE DG+   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G ++VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
            +VV  E  +  A + G  F+ETSAK   NV + F  +   I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  116 bits (291), Expect = 1e-32
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 4/164 (2%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD GVGK+ L ++   + ++E+Y  TI   ++ + V  DG+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN---VNKLLVGNKCDLT 126
           +  +   + R   G I+VY +T + +F  V+++  +I R   ++   V  ++VGNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             + VS E   A A  +G  F+E SAK + NVE+AF  +  +++
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  115 bits (290), Expect = 1e-32
 Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F  + +I+ Y  TI   ++ +    D +T  L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + VY +T + SF  +  +  +I R    D V  +LVGNKCDL +
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS    +  A   GIPF+ETSAK   NV++AF  +   I+
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167

Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  113 bits (283), Expect = 7e-32
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 7/164 (4%)

Query: 10  KLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTV--EQDGKTIKLQIWDTA 65
           +  ++GD  VGKS L+  F  D  ++ ++Y  T G D  ++TV       +++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKC 123
           GQE F  +  + +     + +VYDVT++ SFNN  +W+N + R  S  ++   +LVGNKC
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRV-RTHSHGLHTPGVLVGNKC 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 167
           DLT  + V    A+A A    + F ETSAK+    E  F+++A 
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  113 bits (284), Expect = 2e-31
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 20/197 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD GVGK+  + R     + + YI T+GV+        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY      II++DVT + ++ NV  W  +I R   +N+  +LVGNK D+   
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKDR 128

Query: 129 KVVSYETAKA----FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN---- 180
           +V      KA    F  +  + + + SAK + N E+ F+ +A     R+ + P++     
Sbjct: 129 QV------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----RLTNDPNLVFVGA 178

Query: 181 -NARPPTVQIKGQPVAQ 196
               P  +QI  + VAQ
Sbjct: 179 PALAPEEIQIDPELVAQ 195

Length = 215

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  111 bits (280), Expect = 2e-31
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY      II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 119

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
           KV        F  +  + + E SAK + N E+ F+ +A
Sbjct: 120 KV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  111 bits (279), Expect = 3e-31
 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 13/164 (7%)

Query: 12  LLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++G  GVGKS LL         E      +T   D      E D   +KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 69  RF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
            F       +     RGA  I++V D TD+ES  + K  L  + R   + +  +LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPIILVGNKI 116

Query: 124 DLTANKVVSYET-AKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
           DL   + V      +  A  +G+P  E SAK    V++ F  + 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  110 bits (278), Expect = 5e-31
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ ++G SGVGKS L +RF    +I  Y   +   +  R V  DG+ + L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FRT--ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDL 125
                      R A G ++VY +TD+ SF+ V Q L  I         +  +LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 126 TANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAF 162
             ++ VS E  +  A E+G  F E SA ++   V+  F
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVF 157

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  110 bits (276), Expect = 1e-30
 Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 2/172 (1%)

Query: 31  DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90
           D++  +Y STIG+DF  +T+  D   ++LQ+WDTAGQERFR++  SY R +   I+VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 91  TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET 150
           T+++SF N  +W+ +I      +V   LVGNK DL   + V+YE     A E    F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 151 SAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 202
           SAK   N++  F  +AA + +      + N+A    +Q+     A      S
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPN--LDNSNSNDANVVDIQLTNNSNANDKNMLS 172

Length = 176

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  107 bits (268), Expect = 2e-29
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS + ++F   S+ + +  TI   +K +    D +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            F  +   Y R   G II Y VTD+ SF    ++   I R   ++++  +LVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
            + V+ E  +  A E   PF ETSA     ++ AF  +   I+ R  S P++
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR-RKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  102 bits (256), Expect = 7e-28
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++++ G  GVGKS L+LRF   ++ ESYI TI   ++ + +        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           +F  +        H  I+VY +T ++S   +K     I     +N+ K   +LVGNKCD 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
           + ++ VS     A A      FMETSAK + NV++ F
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 99.8 bits (249), Expect = 4e-26
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 2/178 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++++L+GDSGVGKS L   F    Y +S     G D   RTV  DG+   L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
               +  S  +     +IVY VTD+ SF    +   ++ R   ++++  +LVGNK DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPP 185
           ++ VS +  +A A      F+ETSA    NV++ F  +   ++ R  S+   N  R  
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKE-KNTRRMA 177

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY      II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132

Query: 129 KV----VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN---- 180
           +V    V++   K       + + E SAK + N E+ F+ +A     ++A  P+++    
Sbjct: 133 QVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVES 182

Query: 181 -NARPPTVQI 189
               PP VQI
Sbjct: 183 PALAPPEVQI 192

Length = 219

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   Y+ T   +F +  V  DGK ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           F  +    Y      ++ + V +  SF N+  +W+ EI ++ +     +LVG + DL  +
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 129 ------------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                       K VS   AKA A++IG   ++E SA    N+++ F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 96.3 bits (240), Expect = 2e-25
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 22/170 (12%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 69  --RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL 125
             R R ++   Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 117

Query: 126 ------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                          + V  E  +A A++IG   ++E SAK    V + F
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 92.5 bits (230), Expect = 9e-24
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 18/176 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GDS  GK+ LL  FA DS+ E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSPY 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT-- 126
           +  +    Y  +  ++I +D++  E+ ++V K+W  E+  +   N   LLVG K DL   
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRTD 120

Query: 127 -------ANKV---VSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MAMAASI 169
                  +NK    VS+E  +  A +IG   ++E SAK S N V   F MA  A +
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 90.9 bits (226), Expect = 4e-23
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+ L+GD+ +GK+ L++++ +  + E YI T+GV+F  +T+   G  I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           F  +     + A  I+ ++D+T + + N++K+W  +  R  +     +LVG K DL A+ 
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQA-RGFNKTAIPILVGTKYDLFADL 120

Query: 130 VVSY-----ETAKAFADEIGIPFMETSAKDSTNVEQAF 162
                    + A+ +A  +  P +  S   S NV++ F
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 91.0 bits (226), Expect = 4e-23
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+ LL  F    + E Y  T+  ++ +     DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y  AH I+I + +   +S  NV+  W+ E+ RY   NV  +LVG K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQE 120

Query: 126 -------TANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 164
                    ++ V  + AK  A  IG   +ME SA     V+  F A
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEA 167

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 91.5 bits (227), Expect = 5e-23
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 49/230 (21%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GD  VGK+ LL R+ +  + ++ +ST+G  F ++   Q G    + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK---QWG-PYNISIWDTAGREQ 56

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT--- 126
           F  + S Y RGA  +I+ YDV++ +S   ++     +   A+++    +VGNK DLT   
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 ----------------ANKVVSYETAKAFADEI--------------GIPFMETSAKDST 156
                             + V+ E AKAF   I                   ETSAK   
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 157 NVEQAF-----MAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 201
           NV++ F     + +   +  R  +  +      P       P   KS CC
Sbjct: 177 NVDELFEYLFNLVLPLILAQRAEANRTQGTVNLP------NPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 88.2 bits (219), Expect = 7e-23
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+++IGD G GKS LL +     +    +   G    + T+E DG T  L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFN---NVKQWLNEIDRYASDNVNKLLVGNKC 123
            +     + + A  I++VYD+TD+ES N    +  WL  + +     +  +LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 88.4 bits (219), Expect = 3e-22
 Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 30/203 (14%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD   GK+ LL  F    + + Y  T+  ++ I  +  DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           F  + S  Y   H I++ + V + +S  NV+ +WL EI  +    V  +LV  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 129 --------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
                     +SYE   A A  I    ++E SAK +  V +AF   A             
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL--------- 170

Query: 180 NNARPPTVQIKGQPVAQKSGCCS 202
            NARPP              C  
Sbjct: 171 -NARPPH--------PHSRACTI 184

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 88.1 bits (218), Expect = 7e-22
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 14  IGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73
           +GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 74  TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 133
              YY      II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   KV + 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRKVKAK 119

Query: 134 ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTVQIKGQ 192
                F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V +   
Sbjct: 120 SI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPA 177

Query: 193 PVAQ 196
             AQ
Sbjct: 178 LAAQ 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 85.7 bits (212), Expect = 4e-21
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  +
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAP-GVPIVLVGTKLDLRDD 120

Query: 129 K--------VVSYETAKA--FADEIGIP-FMETSAKDSTNVEQAFMA 164
           K         V   TA+      +IG   ++E S+K   NV+  F A
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 85.4 bits (211), Expect = 6e-21
 Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++ + YI T+  ++  +T   DG+T+ L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  + +  Y   +  II + +    S+ NV+ +W  E+  +   NV  LLVG K DL  +
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRND 122

Query: 129 KVV------------SYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                          + +   A A +I  + ++E SA +   V++ F
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 84.9 bits (210), Expect = 1e-20
 Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           +L+ +G +GVGK+ L+ RF  D++   +  T+  +   +  E  G  + + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVGNKCDLTAN 128
           F  +     +      +VY V D ESF  VK+   EI     D  V  ++VGNK D  A 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 129 KVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAA----------SIKDRMASQP 177
           + V    A +  + +    F+E SAKD+ NV + F  +            +++ R  S P
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRESAP 179

Query: 178 SMNNARPP 185
           S    RPP
Sbjct: 180 SEIQRRPP 187

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 83.0 bits (206), Expect = 2e-20
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L +      + + I TIG  F + TVE   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGE-VVTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
            R +   YY    G+I V D +D+E     K  L+++   +         L++ NK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEEL--KGAPLLILANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 82.0 bits (202), Expect = 9e-20
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 16/162 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 65

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 124

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKDSTN 157
                         VSY+     A +IG   ++E SA  S N
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG K DL  +
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 120

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + V +  SF NVK +W+ E+  YA  NV  LL+G + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 128 N------------KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAF 162
           +            K ++ E  +  A EIG   ++E SA     ++  F
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           KL+L+G  GVGK+ L  +   + +     ST G++    +    + K I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFRTITSSYYRGAHGI-IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD-LT 126
            +   T  ++  +  + ++V+D+   +  + V  WL +I  +   +   +LVG   D   
Sbjct: 63  IYHA-THQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTHIDESC 120

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
              ++     K F   I       S K+   +        A +K  +A +
Sbjct: 121 DEDILKKALNKKFPAIIND-IHFVSCKNGKGI--------AELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 13  LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72
           L+G    GK+ L+   A   + E  I T+G  F +R V +   TIK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 73  ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDL----TA 127
           +   Y RG + I+ V D  D+E     K  L++ +++ + + +  L++GNK DL    + 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160
           ++++     K+  D     +   SAK+ TN++ 
Sbjct: 120 DELIEQMNLKSITDREVSCYS-ISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GD+  GK+ LL  FA D+Y ESY+ T+  ++   + E D   I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSY 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  ++I +D++  E+ ++V K+W  E   +   N   +LVG K D+  +
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKLVLVGCKLDMRTD 120

Query: 129 KV------------VSYETAKAFADEIG-IPFMETSAKDSTN-VEQAFMAMAASIKDRMA 174
                         V++E     A ++G + ++E S++ S N V   F     +   R  
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 175 SQPSMNNARPPTVQIKGQP 193
                + +R    +I  QP
Sbjct: 181 PSLKRSTSRRGLKRISQQP 199

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 70.9 bits (173), Expect = 4e-15
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 19/186 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 73

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E F++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIGCKTDLRTD 132

Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI---KDR 172
                         +SYE   A A ++G   ++E SA  S     +    A+ +   K  
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLS 192

Query: 173 MASQPS 178
             ++ S
Sbjct: 193 PLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 18/206 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++++++G S VGK+ ++ RF    + E Y  TI  DF  +     G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL---------LV 119
            F  +           I+V+ + ++ESF  V +   +I    S   NK          + 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 120 GNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA--ASIKDRMASQ 176
           GNK D    + V   E  +    +    + E SAK ++N+++ F A+   A + + M+  
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMS-- 177

Query: 177 PSMNNARPPTVQIKGQPVAQKSGCCS 202
           PS++  R  +VQ  G  + +KS   S
Sbjct: 178 PSLH--RKISVQY-GDALHKKSRGGS 200

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQ 67
             ++++G    GK+ +L R   + ++ + + T G +  KI+    + K +    WD  GQ
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDL 125
           E+ R +  SY R   GI+ V D  D E     K  L++I ++ S+N  V  L++ NK DL
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKF-SENQGVPVLVLANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TV    K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
             R +  +Y+     +I V D  D++     K+ L+ +   +  A  +   L++ NK DL
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELA--DAPLLILANKQDL 127

Query: 126 T 126
            
Sbjct: 128 P 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                       K ++ ET +  A ++  + ++E SA     ++  F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 30/169 (17%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESY-----ISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +++LIGD GVGKS L++    + + E+        TI  D    T E+    +   I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPER----VPTTIVDT 56

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKC 123
           + + + R   ++  R A+ I +VY V    +   ++ +WL  I R     V  +LVGNK 
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKS 115

Query: 124 DLTANKVVSYETAKAFADEIGIPFM----------ETSAKDSTNVEQAF 162
           DL            A  +E  +P M          E SAK   NV + F
Sbjct: 116 DLRDGSSQ------AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TV    K I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTT-IPTIG--FNVETVTY--KNISFTVWDVGGQDK 69

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
            R +   YY    G+I V D  D++  +  ++ L+ +  +    D V  L+  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 14/129 (10%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKL 59
             P  +Y  K++++G    GK+ +L +F     + +   TIG +     VE+   K I+ 
Sbjct: 10  FFPRKEY--KVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSN-----VEEIVYKNIRF 61

Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 116
            +WD  GQE  R+  ++YY     +I+V D TD+E     K+ L ++   A +++ K   
Sbjct: 62  LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM--LAHEDLRKAVL 119

Query: 117 LLVGNKCDL 125
           L++ NK DL
Sbjct: 120 LVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 12/129 (9%)

Query: 40  TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 99
           T+G++  I T+E      +L  WD  GQE  R++   YY  +HG+I V D TD+E FN  
Sbjct: 38  TVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNES 93

Query: 100 KQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFAD---EIG---IPFMETSA 152
           K    ++    + + V  L++ NK DL  + +   E  + F D    IG         SA
Sbjct: 94  KSAFEKVINNEALEGVPLLVLANKQDLP-DALSVAEIKEVFDDCIALIGRRDCLVQPVSA 152

Query: 153 KDSTNVEQA 161
            +   VE+ 
Sbjct: 153 LEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 28/147 (19%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIG--VDFKIRTVEQDG---KTIKLQIWDT 64
           K+L++GDSGVGKS L+     +  + +   T+G  VD +  T  +     KT  +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 65  AGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-------------- 106
            G     E  ++  + +Y   +GII V+D+T+++S  N+ +W  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 107 -----DRYASDNVNKLLVGNKCDLTAN 128
                +++A + V  L++G K D    
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQDK 73

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKLLVGNKCDL 125
            R +   YY+  +G+I V D  D+E   + ++   E++R  S+    +   L+  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDARE---ELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 24/173 (13%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ--DGKTIKLQIWDTAGQ 67
           K++ +G    GK+ LL    DD  +  ++ T+       T E+   G  +K   +D  G 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHP-----TSEELTIGN-VKFTTFDLGGH 73

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLT 126
           E+ R +   Y+    GI+ + D  D E F   K+ L+ + +     NV  L++GNK D  
Sbjct: 74  EQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKP 133

Query: 127 ANKVVSYETAKAFADEIGIPFMET-----SAKDSTNVEQA-FMAMAASIKDRM 173
               VS E  +   + +G+    T     S K S       FM    S+  R 
Sbjct: 134 --GAVSEEELR---EALGLYGTTTGKGGVSLKVSNIRPVEVFM---CSVVKRQ 178

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQDK 65

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV-GNKCDL 125
            R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  LLV  NK DL
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL--LLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 10  KLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           ++L++G    GK+ +L  L+  +   I + I TIG  F + TVE   K I   +WD  GQ
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQ 54

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV-GNKCD 124
           ++ R +   Y++   G+I V D  D+E     ++ L  +  +    D V  LLV  NK D
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV--LLVFANKQD 112

Query: 125 L 125
           L
Sbjct: 113 L 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 50/196 (25%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVE 51
             K +++GD+ VGK+ L+   A +                  I+ Y     V  + R V 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV- 60

Query: 52  QDGKTIKLQIWDTAG-QERFRTITSSYYRGAHG----IIIVYDVTDQESFNNVKQ-WLNE 105
            DG ++ L++WDT G  ++ R       R A+G    +++ + +    S  NVK  W  E
Sbjct: 61  VDGVSVSLRLWDTFGDHDKDR-------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPE 113

Query: 106 IDRYASDNVNKLLVGNKCDL-------------------TANKVVSYETAKAFADEIGIP 146
           I  +    V  +LVG K DL                       ++  ET +A A E+GIP
Sbjct: 114 IRHFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIP 172

Query: 147 FMETSAKDSTNVEQAF 162
           + ETS      V+  F
Sbjct: 173 YYETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 25/143 (17%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIG--VDFKIRTVEQDGKT---IK------ 58
           ++L++GDSGVGKS L+      S I     TIG  V  K  T    G +   IK      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 59  --LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--- 113
             +++WD +G ER++   S +Y   +G+I V+D++ + +  ++++W +E+    + +   
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 114 ---------VNKLLVGNKCDLTA 127
                    V  +++GNK D+  
Sbjct: 143 GSGGPGGLPVPYIVIGNKADIAP 165

Length = 334

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GKS LL +      + + I T+G  F +  ++ +   + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEK 56

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDL 125
            RT+   Y     G++ V D +D+   +  ++ L  I +      V  +L+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GK+ +L + A +  I     T G  F I+ V+ DG   KL +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLASED-ISHITPTQG--FNIKNVQADG--FKLNVWDIGGQRK 71

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDL 125
            R    +Y+     +I V D  D++ F    Q L E+ +      V  L+  NK DL
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD----- 63
            ++ ++G  GVGK+ ++ +F    + E YI T         V   G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK---QWLNEIDRYASD 112
               TAGQE    RFR +     R +   I+VYD+   +SF+ VK   Q + E     + 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 113 NVNKLLVGNKCDLTANKVV 131
               ++VGNK D   ++  
Sbjct: 116 EPPIVVVGNKRDQQRHRFA 134

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      I + I TIG  F + TVE   K I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----LLVGNKCDL 125
            R +   Y++   G+I V D  D++     +   +E+ R  +++  +    L+  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +F  +  I +   T+G  F I+T+E +G   KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGED-ISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQK 69

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
             R+   +Y+     +I V D +D+    + K+ L ++   +R A   +  L+  NK DL
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATL--LIFANKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
          +++ +G  G GK+ +L +   D +++  I TIG  F + TVE   K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHK 55

Query: 70 FRTITSSYYRGAHGIIIVYD 89
           R +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL 103
            R     YY     II V D TD++     K  L
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSEL 89

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +L++G  G GK+ LL   + +  +ES + T G +       QD     L+I    G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV-AIPTQDAIMELLEI---GGSQNL 57

Query: 71  RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           R     Y  G+ G+I V D  D E     +Q L+++ ++  D +  +++ NK DL A
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD-LPLVVLANKQDLPA 113

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 10  KLLLIGDSGVGKSCLL------------LRFADDSYIESYISTIGVDFKIRTVEQDGKTI 57
           K+++IG  G GK+  +               +  S      +T+ +DF   ++E D  T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT- 68

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL 117
            + ++ T GQERF+ +     RGA G I++ D +   +F+  +  + +    + + +  +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLT-SRNPIPVV 125

Query: 118 LVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQA 161
           +  NK DL  + +   +  +A   E+  +P +E  A +       
Sbjct: 126 VAINKQDL-FDALPPEKIREALKLELLSVPVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 12  LLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
           LL+G S  GK+ L  +        +  S         +    GK  KL + D  G E+ R
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGK--KLTLVDVPGHEKLR 61

Query: 72  TITSSYYRGAH-GIIIVYD-VTDQESFNNVKQWLNEIDRYASDNVNK------LLVGNKC 123
                Y + +   I+ V D  T Q++  +V ++L +I    +D          L+  NK 
Sbjct: 62  DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDI---LTDLEKIKNKIPILIACNKQ 118

Query: 124 DLTANK 129
           DL   K
Sbjct: 119 DLFTAK 124

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           +F   ++G  G GKS LL  F   S+   +Y  TI   + + TVE  G+  K  I    G
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVG 62

Query: 67  QERFRTITSSYYRGAHGIII-VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           ++    + +     A  +   VYD +D  SF+   +   +   +    +  L V  K DL
Sbjct: 63  EDEEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKK--YFMLGEIPCLFVAAKADL 120

Query: 126 TANKVVSYETAKAFADEIGIPF-METSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARP 184
              +  +      F  ++G+P  +  S++   +  + F  +A       A  P ++    
Sbjct: 121 DEQQQRAEVQPDEFCRKLGLPPPLHFSSRLGDSSNELFTKLA-----TAAQYPHLSIPEL 175

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL ++G+   GKS L+ R+   SY++   S  G  FK + V  DG++  L I D  G   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLE-SPEGGRFK-KEVLVDGQSHLLLIRDEGGA-- 57

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTAN 128
                + +      +I V+ + D+ SF  V +  +++  Y     +  +LVG +  ++A+
Sbjct: 58  ---PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISAS 114

Query: 129 --KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 169
             +V+    A+    ++    + ET A    NVE+ F   A  I
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 14/132 (10%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           +L++G    GK+ ++ +    +     I  T+G  F + + ++    +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK----QWLNEIDRYASDNVNKLLVGNKCDL 125
           +R +   YY+   GII V D +D+      K      LN  D      +  L   NK DL
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPD-IKHRRIPILFYANKMDL 116

Query: 126 ----TANKVVSY 133
               TA K+   
Sbjct: 117 PDALTAVKITQL 128

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 35/168 (20%)

Query: 9   FKLLLIGDSGVGKSCLLLRFA-DDSYIESYIS-----TIGVDFKIRTVEQDGKTIKLQIW 62
            K+++IG   VGKS LL      D  I + I+      I  D  +         I +++ 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-------GIPVRLV 270

Query: 63  DTAGQ-------ERF---RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD 112
           DTAG        ER    R   +     A  ++ V D +        K+ L  I+     
Sbjct: 271 DTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLD----KEDLALIEL-LPK 323

Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160
               ++V NK DL +   +  E         G   +  SAK    ++ 
Sbjct: 324 KKPIIVVLNKADLVSKIELESEKLAN-----GDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           LL +G    GK+ L+         +    T+G  F    +  D    ++ I+D  G   F
Sbjct: 2   LLTVGLDNAGKTTLV-SALQGEIPKKVAPTVG--FTPTKLRLD--KYEVCIFDLGGGANF 56

Query: 71  RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-GNKCDL 125
           R I  +YY  AHG++ V D +D +    VK+ L E+ ++   +   +LV  NK D 
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK 112

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 24/111 (21%)

Query: 10  KLLLIGDSGVGKSCLLLR-FA-----DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           K+LL+G  G GKS +    F+     D   +    +TI V+     V   G  + L +WD
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLG---ATIDVE--QSHVRFLGN-LTLNLWD 54

Query: 64  TAGQERFRTITSSY-----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY 109
             GQ+ F     +      +     +I V+DV  +E       +  ++   
Sbjct: 55  CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE-------YEEDLATL 98

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K+L +G    GK+ LL    +D      ++         + E     IK   +D  G ++
Sbjct: 19  KILFLGLDNAGKTTLLHMLKNDR-----LAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQ 73

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKLLVGNKCD 124
            R +   Y+   +GI+ + D  D+E F   K+   E+D   SD     V  L++GNK D
Sbjct: 74  ARRLWKDYFPEVNGIVYLVDAYDKERFAESKR---ELDALLSDEELATVPFLILGNKID 129

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 9  FKLLLIGDSGVGKS----CLLLR--FADDSYIESYI-STIGVDFKIRTVEQ--DGKTIKL 59
          F ++++G+SG+GKS     L     +            T  V+ KI   E   +G  +KL
Sbjct: 5  FNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKL 64

Query: 60 QIWDTAG 66
           + DT G
Sbjct: 65 TVIDTPG 71

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PTZ00099	176	rab6; Provisional	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.89
COG1159	298	Era GTPase [General function prediction only]	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
COG2229	187	Predicted GTPase [General function prediction only	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.82
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.81
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
COG0218	200	Predicted GTPase [General function prediction only	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
PRK12735	396	elongation factor Tu; Reviewed	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
COG0536	369	Obg Predicted GTPase [General function prediction	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.76
CHL00071	409	tufA elongation factor Tu	99.76
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.75
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.75
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
PRK00049	396	elongation factor Tu; Reviewed	99.74
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
PLN03127	447	Elongation factor Tu; Provisional	99.73
PLN03126	478	Elongation factor Tu; Provisional	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.72
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.72
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
KOG1145	683	consensus Mitochondrial translation initiation fac	99.69
PRK13351	687	elongation factor G; Reviewed	99.69
COG3596	296	Predicted GTPase [General function prediction only	99.68
PRK12739	691	elongation factor G; Reviewed	99.67
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.63
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.61
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.6
PRK09866	741	hypothetical protein; Provisional	99.6
PRK00007	693	elongation factor G; Reviewed	99.59
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
PRK12740	668	elongation factor G; Reviewed	99.59
PTZ00258	390	GTP-binding protein; Provisional	99.56
KOG0090	238	consensus Signal recognition particle receptor, be	99.55
PRK14845	1049	translation initiation factor IF-2; Provisional	99.54
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.52
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.51
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.51
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.5
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.5
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.49
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.48
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.47
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.46
PRK09601	364	GTP-binding protein YchF; Reviewed	99.46
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.46
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.46
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.46
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.45
PRK07560	731	elongation factor EF-2; Reviewed	99.44
PTZ00416	836	elongation factor 2; Provisional	99.44
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.44
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.43
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.43
PRK13768	253	GTPase; Provisional	99.43
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.39
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.38
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.38
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.38
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.37
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.36
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.36
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.32
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.31
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.3
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.3
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.29
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.28
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.27
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.26
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.26
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.25
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.25
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.25
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.25
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.22
KOG0410	410	consensus Predicted GTP binding protein [General f	99.22
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.19
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.18
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.13
PRK12289	352	GTPase RsgA; Reviewed	99.11
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.08
PRK12288	347	GTPase RsgA; Reviewed	99.06
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.06
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.04
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.03
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.02
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.0
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.99
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.99
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.98
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.95
KOG2486	320	consensus Predicted GTPase [General function predi	98.95
PRK00098	298	GTPase RsgA; Reviewed	98.94
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.92
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.85
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.83
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.82
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.81
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.81
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.8
KOG0460	449	consensus Mitochondrial translation elongation fac	98.78
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.78
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.78
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.76
KOG1143	591	consensus Predicted translation elongation factor	98.75
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.73
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.7
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.7
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.7
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.69
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.69
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
PRK13796	365	GTPase YqeH; Provisional	98.68
COG1161	322	Predicted GTPases [General function prediction onl	98.66
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.66
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.64
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.64
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.63
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.62
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.61
PRK10416	318	signal recognition particle-docking protein FtsY;	98.6
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.59
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.59
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.58
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.57
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.55
PRK01889	356	GTPase RsgA; Reviewed	98.54
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.53
PRK12288	347	GTPase RsgA; Reviewed	98.5
PRK14974	336	cell division protein FtsY; Provisional	98.48
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.46
cd03112	158	CobW_like The function of this protein family is u	98.46
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.44
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.4
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.35
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.34
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.34
PRK13796	365	GTPase YqeH; Provisional	98.33
PRK12289	352	GTPase RsgA; Reviewed	98.32
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.29
COG1162	301	Predicted GTPases [General function prediction onl	98.26
COG3523	1188	IcmF Type VI protein secretion system component Va	98.24
COG1162	301	Predicted GTPases [General function prediction onl	98.22
COG0523	323	Putative GTPases (G3E family) [General function pr	98.21
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
PRK00098	298	GTPase RsgA; Reviewed	98.18
PRK13695	174	putative NTPase; Provisional	98.18
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.15
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.13
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.09
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.04
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.04
cd03114	148	ArgK-like The function of this protein family is u	98.03
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.03
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.03
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.99
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.94
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.92
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.9
KOG2484	435	consensus GTPase [General function prediction only	97.89
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.88
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.86
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.85
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
TIGR00959	428	ffh signal recognition particle protein. This mode	97.85
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.84
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.84
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.8
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.8
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.78
PRK10867	433	signal recognition particle protein; Provisional	97.78
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.76
cd03111	106	CpaE_like This protein family consists of proteins	97.74
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.73
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.67
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.66
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.65
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.62
COG1161	322	Predicted GTPases [General function prediction onl	97.57
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.57
PRK08118	167	topology modulation protein; Reviewed	97.55
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.54
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.53
PRK07261	171	topology modulation protein; Provisional	97.52
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.52
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.48
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.47
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.43
cd03110	179	Fer4_NifH_child This protein family's function is	97.43
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.37
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.37
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.36
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.34
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.33
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.31
PRK06217	183	hypothetical protein; Validated	97.3
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.27
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.27
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.27
PRK01889	356	GTPase RsgA; Reviewed	97.25
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.25
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.22
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.22
cd02036	179	MinD Bacterial cell division requires the formatio	97.22
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.22
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.21
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.19
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.18
PRK03839	180	putative kinase; Provisional	97.18
PRK14738	206	gmk guanylate kinase; Provisional	97.18
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.17
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.16
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.16
PF00004	132	AAA: ATPase family associated with various cellula	97.15
smart00382	148	AAA ATPases associated with a variety of cellular	97.15
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.14
PRK14530	215	adenylate kinase; Provisional	97.14
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.13
PRK00131	175	aroK shikimate kinase; Reviewed	97.13
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.13
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.12
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.1
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.09
PRK08233	182	hypothetical protein; Provisional	97.07
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.07
PRK05480	209	uridine/cytidine kinase; Provisional	97.06
PRK14737	186	gmk guanylate kinase; Provisional	97.06
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.05
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.05
PRK05057	172	aroK shikimate kinase I; Reviewed	97.05
PRK13949	169	shikimate kinase; Provisional	97.05
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.05
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.04
PRK02496	184	adk adenylate kinase; Provisional	97.04
PRK14532	188	adenylate kinase; Provisional	97.04
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.03
PRK00625	173	shikimate kinase; Provisional	97.02
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.0
PTZ00088	229	adenylate kinase 1; Provisional	97.0
COG3911	183	Predicted ATPase [General function prediction only	96.99
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.99
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.99
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.99
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.97

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-45  Score=247.62  Aligned_cols=202  Identities=74%  Similarity=1.190  Sum_probs=186.3

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |.+..+|.+||+|+|.+|+|||+|+.+|....+...+..|.+.++...++.++++.+++++|||+|+++|+++..++|++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  159 (203)
                      ++++|+|||+++..||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++.+.|+.+++++ ++++||+++.+++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCC-CCCCCCCC
Q 028813          160 QAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV-AQKSGCCS  202 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~  202 (203)
                      ++|..|...+..++............+.+..++|. ...++||+
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence            99999999999888776655545566666666555 44455775

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8e-42  Score=231.72  Aligned_cols=197  Identities=45%  Similarity=0.751  Sum_probs=178.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|..++|||||+-++..+.+.....+|.+-.+....+.+++..+++.||||+|+++|.++.+.||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45799999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|||+++.+||..++.|+.++.+..+++.-+.||+||+|+.+.+.+..++.+.++...+..++++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999888888888999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCccccc-CCCCCCCCCCCC
Q 028813          166 AASIKDRMASQPSMNNARPPTVQIK-GQPVAQKSGCCS  202 (203)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~  202 (203)
                      .+.+.....+.......++...... .++....++|||
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            9999877766554433333334333 237788999997

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-39  Score=225.35  Aligned_cols=173  Identities=63%  Similarity=1.080  Sum_probs=167.0

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+++|.++||||+|+.+|....+...+..+.++++...++..++..+.+++|||+|+++++++...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +++|||+++..+++.+..|+..++.+...++|.+||+||+|+...+.+..+..++++.++|+.++++||++|.||+++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC
Q 028813          164 AMAASIKDRMASQ  176 (203)
Q Consensus       164 ~l~~~~~~~~~~~  176 (203)
                      .|.+.+..+....
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999999766554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-39  Score=221.51  Aligned_cols=196  Identities=38%  Similarity=0.659  Sum_probs=169.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+|++++|..++||||||.+|....+...+.+|.+.++...++.+.+..+++++|||+|+++|+++...|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|||+++..+|+...+|++.+...... +.-++||+||.||.+.+++..++.+..++++++.|+++||+.|.||.++|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999766554 4778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCC-CCcccccCCCCCCCC----CCCC
Q 028813          165 MAASIKDRMASQPSMNNAR-PPTVQIKGQPVAQKS----GCCS  202 (203)
Q Consensus       165 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~c~~  202 (203)
                      |...+.+... ......+. ...+.+++.++.+++    +|||
T Consensus       180 Iaa~l~~~~~-~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C  221 (221)
T KOG0094|consen  180 IAAALPGMEV-LEILSKQESMVDINLKGSPNEQQASKPGLCSC  221 (221)
T ss_pred             HHHhccCccc-cccccccccceeEEccCCCCcccccCCCCCCC
Confidence            8777765533 22122211 344444444444443    4998

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-39  Score=213.95  Aligned_cols=199  Identities=46%  Similarity=0.763  Sum_probs=174.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ...+.+||+++|.+|+|||||+.+|....+.+....+.+.++..+.+.+++.++++.||||+|+++|+.+...||+.+.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      +|+|||++.+++|..+..|++++..+.. .++..++|+||+|....+.+..++...|++++++-++++||++.+|++..|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            9999999999999999999999977655 456678999999988788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCcccccCCCC--CCCCCCCC
Q 028813          163 MAMAASIKDRMASQPSMNNARPPTVQIKGQPV--AQKSGCCS  202 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~  202 (203)
                      +.|..++.+--.-...........+...|..+  ...++||+
T Consensus       167 eelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs  208 (209)
T KOG0080|consen  167 EELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS  208 (209)
T ss_pred             HHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence            99999998654444433444444555554444  33466886

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=9.8e-38  Score=223.19  Aligned_cols=165  Identities=50%  Similarity=0.909  Sum_probs=151.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      ++|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999988888888888888888999998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++.++ ++.++++||++|.|++++|.+|.+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766667999999999999877778888888888775 789999999999999999999999


Q ss_pred             HHHHHh
Q 028813          168 SIKDRM  173 (203)
Q Consensus       168 ~~~~~~  173 (203)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.8e-37  Score=223.03  Aligned_cols=193  Identities=37%  Similarity=0.676  Sum_probs=159.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888888888877778877 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  162 (203)
                      ||++++.+++.+..|+..+....    ....|+++|+||.|+.+.+....+++.+++..++ ++++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886432    2568999999999997666677888999999988 699999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCC-CCCCCcccccCCC-CCCCCCCC
Q 028813          163 MAMAASIKDRMASQPSMN-NARPPTVQIKGQP-VAQKSGCC  201 (203)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~c~  201 (203)
                      ++|.+.+.+..+..+... ....+.+....++ ++++.+||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            999999887655433222 2223333333333 33444566

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.4e-37  Score=222.12  Aligned_cols=199  Identities=46%  Similarity=0.804  Sum_probs=166.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            35789999999999999999999999888777788888888888888988889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998776678999999999999777777778888888888999999999999999999999


Q ss_pred             HHHHHHHHhccCC---CC--C----CCCCCcccccCCCCCCCCCCCCC
Q 028813          165 MAASIKDRMASQP---SM--N----NARPPTVQIKGQPVAQKSGCCST  203 (203)
Q Consensus       165 l~~~~~~~~~~~~---~~--~----~~~~~~~~~~~~~~~~~~~c~~~  203 (203)
                      |.+.+.+......   ..  .    ......+......+.+++|||++
T Consensus       169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (216)
T PLN03110        169 ILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCCST  216 (216)
T ss_pred             HHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCcCC
Confidence            9998877543211   11  0    01111122233356678889875

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.7e-37  Score=217.34  Aligned_cols=170  Identities=44%  Similarity=0.740  Sum_probs=154.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|..++|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45779999999999999999999999888777777777778778888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|||++++.+++.+..|+.++.... .+.|++||+||.|+.+.+.+..++.+.++..+++++++|||++|.||+++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997665 46999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+..+...
T Consensus       162 l~~~i~~~~~~  172 (189)
T cd04121         162 LARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHhcCC
Confidence            99988766553

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-37  Score=211.61  Aligned_cols=173  Identities=54%  Similarity=0.854  Sum_probs=165.8

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+.++.+||+++|.+++|||-|+.+|....+..+..+|.++++....+.++++.++.+||||+|+++|+.....+|+.+.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++++|||++...+|+.+..|+.+++.+...+++++||+||+||.+.+.+..++.+.++.+.+..++++||++..+++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028813          163 MAMAASIKDRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      +.++..+.....+
T Consensus       169 ~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  169 ERVLTEIYKIVSK  181 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988766554

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=208.96  Aligned_cols=200  Identities=36%  Similarity=0.649  Sum_probs=172.7

Q ss_pred             CCC-CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc
Q 028813            1 MNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR   79 (203)
Q Consensus         1 m~~-~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (203)
                      |+. .....+||+++|.+|+|||||++++.+..+...+..+.+.++-.+.+.+++..+.+.||||+|+++|.++-..+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            666 4478899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC--ccCCHHHHHHHHHHhC-CcEEEeec
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN--KVVSYETAKAFADEIG-IPFMETSA  152 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa  152 (203)
                      .+|+.+++||++++.+++.+..|..++-....    ...|++|++||+|+...  +.++....+.|+...+ +|||++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999855444    46899999999999653  6788999999998876 99999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCC
Q 028813          153 KDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC  200 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  200 (203)
                      +...||.++|+.+.+.+..............+..+......+...++|
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c  208 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGC  208 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCC
Confidence            999999999999999888775543333344555566555555555544

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.8e-36  Score=216.21  Aligned_cols=190  Identities=47%  Similarity=0.890  Sum_probs=162.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.+||+||+.++...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888753 5666777677777778888889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...++..++++++++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877668999999999999766666777788888888999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813          168 SIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  201 (203)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  201 (203)
                      .+.....+.+.....   +.+.-.+..+++++||
T Consensus       161 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGKF---KISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCcE---EeccccCcccccCCCC
Confidence            998776554433322   2555556777888898

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-37  Score=206.44  Aligned_cols=171  Identities=54%  Similarity=0.895  Sum_probs=163.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      +.+.+|++++|..|+|||+|+.+|+...+.+.+..|.+.++....+.++++.+++++|||+|+++|++....+|+.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|||++.+++|..+..|+..++.+..++..++|++||+|+...+.++.++.++|++++++.++++||+++.|++|+|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      ....+.+..+.
T Consensus       163 ta~~Iy~~~q~  173 (216)
T KOG0098|consen  163 TAKEIYRKIQD  173 (216)
T ss_pred             HHHHHHHHHHh
Confidence            99988877654

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.7e-36  Score=219.14  Aligned_cols=187  Identities=33%  Similarity=0.542  Sum_probs=153.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+++|||||+++|..+.+.. ..++.+.++....+    ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988764 45666555443332    3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CccCCHHHHHHHHHHhC-----
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVSYETAKAFADEIG-----  144 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  144 (203)
                      |++++.+++.+..|+..+......+.|++||+||+|+.+                   .+.+..++.+.++.+++     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888877665556789999999999965                   46678888999998876     


Q ss_pred             ---------CcEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813          145 ---------IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  201 (203)
Q Consensus       145 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  201 (203)
                               ++|++|||++|.||+++|.++.+.+.+...++.. ..++....-..+.|+.+|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA-EANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh-hhhhhhccccCCCcccCCCCCC
Confidence                     6899999999999999999999988876665543 2223333444567899999999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=5.2e-36  Score=215.03  Aligned_cols=195  Identities=56%  Similarity=0.889  Sum_probs=164.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            56799999999999999999999998887778888887777788888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|++.+.... ...|+++|+||+|+.+...+..++...++...+++++++|+++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999886654 368999999999997766667777888888889999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCccccc-CCCCCCCCCCC
Q 028813          166 AASIKDRMASQPSMNNARPPTVQIK-GQPVAQKSGCC  201 (203)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~  201 (203)
                      .+.+..................... +...++++.||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            9999876555543333333333333 34446777777

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9.9e-38  Score=202.72  Aligned_cols=197  Identities=57%  Similarity=0.929  Sum_probs=173.8

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |....+..++.+|+|.+|+|||+|+.+|....+..++..+.++++...++.+++..+++.|||++|+++|+.+...+++.
T Consensus         1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg   80 (198)
T KOG0079|consen    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG   80 (198)
T ss_pred             CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence            55666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      .+++++|||+++.++|..+..|++++..... ..|-++|+||.|.++.+.+..++.+.|+...++.+|++|++++.+++.
T Consensus        81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~  159 (198)
T KOG0079|consen   81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA  159 (198)
T ss_pred             CceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence            9999999999999999999999999987766 588999999999999898999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-ccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813          161 AFMAMAASIKDRM-ASQPSMNNARPPTVQIKGQPVAQKSGCC  201 (203)
Q Consensus       161 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~  201 (203)
                      .|.-|.+++.+.. .++.  ...+...+..++.++..+ .||
T Consensus       160 mF~cit~qvl~~k~r~~~--~~~r~~~~~l~~n~~~~~-k~c  198 (198)
T KOG0079|consen  160 MFHCITKQVLQAKLRESV--EQQRADAVSLKDNSKSTK-KCC  198 (198)
T ss_pred             HHHHHHHHHHHHHHhhcH--HHHhhcceEeccCCCccc-cCC
Confidence            9999999887665 2222  223344455554444444 666

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.2e-35  Score=208.74  Aligned_cols=168  Identities=61%  Similarity=0.971  Sum_probs=150.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887777788887777778888888899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |+++++++..+..|+..+........|+++++||.|+.+...+..+....++...+++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998777677777888888889999999999999999999999999


Q ss_pred             HHHHhccC
Q 028813          169 IKDRMASQ  176 (203)
Q Consensus       169 ~~~~~~~~  176 (203)
                      +..+..+.
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            98765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-36  Score=197.35  Aligned_cols=175  Identities=49%  Similarity=0.848  Sum_probs=167.2

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |++..++.+|++++|+.|+|||.|+++|....+......+.+.++....+.+.++.++++||||+|+++|++..+.+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +.+.++|||++++++|+.+..|+..++...+.++-+++++||.|+.+.+++...+...|++++.+.+.++|+++|++++|
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028813          161 AFMAMAASIKDRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      .|-...+.+..+.+.
T Consensus       162 aFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  162 AFLKCARTILNKIES  176 (214)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999988888776553

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.5e-35  Score=211.23  Aligned_cols=185  Identities=31%  Similarity=0.569  Sum_probs=154.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888776777665433 4456677878889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ++++.+++.+..|+..+.....   .+.|+++|+||+|+...+.+.......++..++++++++||++|.|++++|+++.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988865542   4689999999999977666777777888888899999999999999999999999


Q ss_pred             HHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCCC
Q 028813          167 ASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS  202 (203)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  202 (203)
                      +.+..++....      + .......+..++.+|||
T Consensus       160 ~~l~~~~~~~~------~-~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQ------G-PKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccC------C-CcCCCCCcccccccCce
Confidence            98876655431      1 14455566666777776

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.6e-35  Score=205.89  Aligned_cols=164  Identities=50%  Similarity=0.888  Sum_probs=149.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||+.++...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999988877777888777777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++..+++..++++++++||++|.|+.++|.++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776667899999999999877777888889999989999999999999999999999998


Q ss_pred             HHHH
Q 028813          168 SIKD  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.4e-34  Score=209.03  Aligned_cols=171  Identities=46%  Similarity=0.796  Sum_probs=150.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++++...+..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            3589999999999999999999998887777788887777777776 456789999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|||++++.+++.+..|+..+..... ...|+++|+||.|+.+...+..++...++..++++++++||++|.|++++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998865543 45778999999999877777788888999999999999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q 028813          165 MAASIKDRMASQP  177 (203)
Q Consensus       165 l~~~~~~~~~~~~  177 (203)
                      |.+.+.++..+.+
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999987766543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=7.1e-35  Score=203.84  Aligned_cols=166  Identities=67%  Similarity=1.127  Sum_probs=150.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35799999999999999999999999988888888887777777888888889999999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+.+......++...++..++++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766679999999999998766677777888888889999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=206.66  Aligned_cols=168  Identities=36%  Similarity=0.648  Sum_probs=145.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            468999999999999999999999888777777766443 5667788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++++++.+..|+..+.... ..+.|+++|+||.|+.+...+...+...++..++++++++||++|.|+.++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999886553 3478999999999987666666677778888888999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028813          166 AASIKDRMAS  175 (203)
Q Consensus       166 ~~~~~~~~~~  175 (203)
                      .+.+.+..++
T Consensus       163 ~~~l~~~~~~  172 (189)
T PTZ00369        163 VREIRKYLKE  172 (189)
T ss_pred             HHHHHHHhhc
Confidence            9988766543

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.8e-34  Score=209.39  Aligned_cols=164  Identities=35%  Similarity=0.592  Sum_probs=147.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|.+|||||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.+||++|+..+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999988888889988888888887764 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ||++++++++.+..|+..+.....   .+.|+++|+||.|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999876543   35689999999999777777888888999989999999999999999999999


Q ss_pred             HHHHHHHH
Q 028813          165 MAASIKDR  172 (203)
Q Consensus       165 l~~~~~~~  172 (203)
                      |.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-35  Score=191.04  Aligned_cols=173  Identities=52%  Similarity=0.980  Sum_probs=164.5

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+|++++|...+|||||+.++.+..+......+.++++..+++--..+++++++|||+|+++++.+...+++++++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            56899999999999999999999999999988899999999999988888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|++||+++.+++..++.|.-++....-.+.|+|+++||+|+.+++.+..+..+.++..+|..+|++||+.+.+++.+|+
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE  176 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC
Q 028813          164 AMAASIKDRMASQ  176 (203)
Q Consensus       164 ~l~~~~~~~~~~~  176 (203)
                      .|...+-+.+.+.
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998877654

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.4e-34  Score=200.77  Aligned_cols=163  Identities=53%  Similarity=0.960  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999887777788877777777777777899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+........|+++|+||+|+.+.+....+...+++..++++++++||++|.|++++|++|.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999977666678999999999997776677777888888889999999999999999999999987


Q ss_pred             HHH
Q 028813          169 IKD  171 (203)
Q Consensus       169 ~~~  171 (203)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.6e-34  Score=202.71  Aligned_cols=164  Identities=32%  Similarity=0.548  Sum_probs=145.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||++++..+.++..+.++.+.. ....+.+++..+.+.+||++|..++..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDA-YKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccce-EEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            4799999999999999999999998887777777633 345577788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..+++++++|||++|.|++++|++|.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988886653 35799999999999977777888888899988999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          167 ASIKDR  172 (203)
Q Consensus       167 ~~~~~~  172 (203)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.5e-35  Score=193.94  Aligned_cols=201  Identities=41%  Similarity=0.687  Sum_probs=175.5

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccC
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      -+-..+-++++++|.+-+|||+|++.|+.+.++.-..|+.+.++...-+.. ++..+++++|||+|+++|+++.+.++++
T Consensus         2 epif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn   81 (213)
T KOG0091|consen    2 EPIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN   81 (213)
T ss_pred             CcceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence            455678899999999999999999999999999989999999988776665 5678999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      +-++++|||+++..+|+.++.|+.+...+.. +.++ +.+|++|+|+...+++..++.+.++..+++.++++|+++|.|+
T Consensus        82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV  161 (213)
T KOG0091|consen   82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV  161 (213)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence            9999999999999999999999999877665 3344 6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCC--------CCCCCCCCcccccCCCCCCCCCCCC
Q 028813          159 EQAFMAMAASIKDRMASQP--------SMNNARPPTVQIKGQPVAQKSGCCS  202 (203)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~c~~  202 (203)
                      +++|..|.+.+....++-.        ....-+|..++.++--.+....|||
T Consensus       162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            9999999999988877621        1123556677777777777778888

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.2e-34  Score=201.11  Aligned_cols=163  Identities=87%  Similarity=1.323  Sum_probs=148.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999888777778888777778888888888999999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++..++++++++||++|.|++++|.+|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999997776567899999999999777777778888899889999999999999999999999998


Q ss_pred             HHH
Q 028813          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.2e-34  Score=200.14  Aligned_cols=160  Identities=49%  Similarity=0.919  Sum_probs=146.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|..++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999888888888888887788888888899999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999877766679999999999998777777888888998889999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=8.2e-34  Score=202.92  Aligned_cols=188  Identities=32%  Similarity=0.619  Sum_probs=152.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+|+|.+|+|||||+++|.++.+.. .+.++.+..+....+..++..+.+.+||++|..++...+..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 4667777667677888898889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.    ..+...++..++..++++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999886653 36899999999998542    23455667778888889999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813          164 AMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  201 (203)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  201 (203)
                      +|.+.+.+...+..  .+.+...+..  ++....++||
T Consensus       160 ~i~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~  193 (193)
T cd04118         160 KVAEDFVSRANNQM--NTEKGVDLGQ--KKNSYFYSCC  193 (193)
T ss_pred             HHHHHHHHhccccc--CCCCccccCC--cCCCCCCCCC
Confidence            99999876543321  1122222333  3445788888

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.3e-34  Score=202.26  Aligned_cols=162  Identities=32%  Similarity=0.615  Sum_probs=144.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+++|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4578999999999999999999999998888888876444 466778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||++++.+++.+ ..|+..+....+ ..|++||+||.|+.+            .+.+..++.+++++++++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 789999977654 689999999999854            235788999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHH
Q 028813          152 AKDSTN-VEQAFMAMAASI  169 (203)
Q Consensus       152 a~~~~~-i~~~~~~l~~~~  169 (203)
                      |++|.| |+++|..+++.+
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.9e-34  Score=200.79  Aligned_cols=159  Identities=34%  Similarity=0.669  Sum_probs=142.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+++|||||+.++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++++..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887554 456777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------cCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           89 DVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK----------VVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        89 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      |++++.+++.+ ..|+..+..... +.|++||+||+|+.+..          .+..++...++..+++ ++++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999976654 69999999999996542          4778889999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASI  169 (203)
Q Consensus       157 ~i~~~~~~l~~~~  169 (203)
                      ||+++|..+.+.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.4e-34  Score=202.17  Aligned_cols=167  Identities=44%  Similarity=0.837  Sum_probs=147.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------CeEEEEEEEeCCCccccccchh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS   75 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   75 (203)
                      ++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+.          +..+.+.+||++|++++...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999998888888888877776666554          3568899999999999999999


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      .+++++|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..++++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999886654 34689999999999987777777888999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIKDR  172 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~  172 (203)
                      |.|++++|++|.+.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=203.51  Aligned_cols=169  Identities=52%  Similarity=0.893  Sum_probs=151.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|...+..++..++..+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998887777778887777778888888889999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|+..+........|+++|+||.|+.+.+.+..++.++++..++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988876666679999999999997777778888899999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028813          166 AASIKDRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+.++..
T Consensus       164 ~~~~~~~~~  172 (210)
T PLN03108        164 AAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHhh
Confidence            998876544

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.7e-34  Score=198.51  Aligned_cols=163  Identities=56%  Similarity=0.903  Sum_probs=148.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|.++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999988877778888888888888888888899999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |+|++++.++..+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999877766799999999999977677777788888888889999999999999999999998


Q ss_pred             HHH
Q 028813          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=7.5e-34  Score=198.60  Aligned_cols=162  Identities=31%  Similarity=0.706  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999876543     4689999999999975556677778888888889999999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.4e-33  Score=197.44  Aligned_cols=166  Identities=54%  Similarity=0.940  Sum_probs=149.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++....+.+||++|++++......+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999998887777778787887788888888889999999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||.|+.+......++.+.++..++++++++|++.+.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999977666679999999999997666677788888888889999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=3e-33  Score=202.52  Aligned_cols=170  Identities=53%  Similarity=0.824  Sum_probs=145.1

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+|+|.+|+|||||+++|.+..+. .+.++.+.+.....+..++..+.+.+||+||.+++...+..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3457799999999999999999999987763 556677777777778888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQ-WLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      +|+|+|++++++++.+.. |...+.... ..+.|+++|+||+|+.....+..++...++..++++++++||+++.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999976 666665433 245799999999999776666777777888888999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028813          162 FMAMAASIKDRMA  174 (203)
Q Consensus       162 ~~~l~~~~~~~~~  174 (203)
                      |++|.+.+.....
T Consensus       169 ~~~l~~~~~~~~~  181 (211)
T PLN03118        169 FEELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999876543

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=9.1e-34  Score=200.41  Aligned_cols=165  Identities=28%  Similarity=0.557  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|..++|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999888888899888888888888988899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |++++.+++.+..|+..+........| ++|+||+|+...     .....++.+.++..++++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998776555566 678999998521     11223566778888899999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.+...
T Consensus       160 ~l~~~l~~~~~  170 (182)
T cd04128         160 IVLAKAFDLPL  170 (182)
T ss_pred             HHHHHHHhcCC
Confidence            99998875433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1e-33  Score=197.60  Aligned_cols=163  Identities=54%  Similarity=0.955  Sum_probs=146.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35799999999999999999999988887777777777777788888888889999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+........+++..+++ .++++||++|.|++++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999776666799999999999987777777788888888875 6899999999999999999


Q ss_pred             HHHH
Q 028813          165 MAAS  168 (203)
Q Consensus       165 l~~~  168 (203)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.9e-33  Score=203.33  Aligned_cols=165  Identities=27%  Similarity=0.548  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+++|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|+++|..+...++.++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            4678999999999999999999999998888888887554 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|||++++.+++.+ ..|+..+....+ +.|++||+||+|+.+            .+.+..++.++++..+++ .|++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999984 789999977654 689999999999854            256788899999999998 699999


Q ss_pred             cCCCC-CHHHHHHHHHHHHHHH
Q 028813          152 AKDST-NVEQAFMAMAASIKDR  172 (203)
Q Consensus       152 a~~~~-~i~~~~~~l~~~~~~~  172 (203)
                      |++|. |++++|..+...+.++
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHh
Confidence            99997 8999999999988765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-34  Score=187.12  Aligned_cols=173  Identities=48%  Similarity=0.866  Sum_probs=161.4

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+++|..|+|||.|.++|..+-+++....+.+.++..+++.+++..+++.||||+|+++|+++...+++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|++||++...+|.-+.+|+.++..+....+--++|+||.|+.+.+++.....++|+......++++||++-++++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999998887777899999999998889998889999999889999999999999999999


Q ss_pred             HHHHHHHHHhccC
Q 028813          164 AMAASIKDRMASQ  176 (203)
Q Consensus       164 ~l~~~~~~~~~~~  176 (203)
                      .+...+.....+.
T Consensus       163 ~~a~rli~~ar~~  175 (213)
T KOG0095|consen  163 DLACRLISEARQN  175 (213)
T ss_pred             HHHHHHHHHHHhc
Confidence            9987776555443

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.9e-33  Score=200.47  Aligned_cols=163  Identities=29%  Similarity=0.581  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|..++|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            348999999999999999999999998888888877443 4456678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhC-CcEEEeec
Q 028813           87 VYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSA  152 (203)
Q Consensus        87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa  152 (203)
                      |||++++.+++.+. .|+..+.... .+.|++||+||.|+.+..            .+..++.++++..++ ++++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 5888776554 469999999999996432            255677888888888 59999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++|.|++++|.+|.+.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.5e-33  Score=196.10  Aligned_cols=161  Identities=46%  Similarity=0.865  Sum_probs=152.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|+++||||||+++|.+..++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999988898998889999999999999999999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++++++++.+..|+..+........|+++++||.|+.+.+.+..++.++++..++++|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999888886799999999999987778899999999999999999999999999999999999887


Q ss_pred             H
Q 028813          170 K  170 (203)
Q Consensus       170 ~  170 (203)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.1e-33  Score=197.83  Aligned_cols=159  Identities=33%  Similarity=0.614  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+++|||||+++|..+.++..+.++.+..+ ...+.+++..+.+.+|||+|++++..+...+++++|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6999999999999999999999998888888876554 456778888999999999999999988999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           89 DVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++.+++.+ ..|+..+....+ ..|+++|+||.|+.+            ...+..++.++++.++++ +|++|||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 789999977654 689999999999854            234788899999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHH
Q 028813          155 STN-VEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~-i~~~~~~l~~~~  169 (203)
                      |.| ++++|..+++..
T Consensus       160 ~~~~v~~~F~~~~~~~  175 (178)
T cd04131         160 SEKSVRDIFHVATMAC  175 (178)
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            985 999999998854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.9e-33  Score=199.15  Aligned_cols=179  Identities=30%  Similarity=0.566  Sum_probs=147.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+||++|++++...+..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998887777776655433 34454 6678999999999999988888899999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc----cCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Q 028813           88 YDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK----VVSYETAKAFADEIGI-PFMETSAKDSTNVEQA  161 (203)
Q Consensus        88 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  161 (203)
                      +|++++.+++.+. .|+..+.... .+.|+++|+||.|+....    .+..++..+++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 4888776543 468999999999986532    4567788888888888 9999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCCCC
Q 028813          162 FMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS  202 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  202 (203)
                      |.++.+.+.......             +.....++..|+|
T Consensus       159 f~~l~~~~~~~~~~~-------------~~~~~~~~~~c~~  186 (187)
T cd04132         159 FDTAIEEALKKEGKA-------------IFKKKKKKRKCVV  186 (187)
T ss_pred             HHHHHHHHHhhhhhh-------------hhccCCCCccccc
Confidence            999999988665533             3445556667764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.2e-33  Score=195.11  Aligned_cols=160  Identities=50%  Similarity=0.863  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++++|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777788877777778888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.++..+..|+..+......+.|+++++||.|+.+...+..++...++..++++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877776789999999999997777777888888999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=3.9e-33  Score=194.31  Aligned_cols=163  Identities=63%  Similarity=1.005  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|+|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788888888888888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+......+.|+++++||+|+........+..+.++..++++++++|+.++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999877766689999999999987766677778888888889999999999999999999999998


Q ss_pred             HHH
Q 028813          169 IKD  171 (203)
Q Consensus       169 ~~~  171 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            764

Rab GTPases are implicated in vesicle trafficking.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3e-33  Score=194.78  Aligned_cols=160  Identities=40%  Similarity=0.699  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||++++....+...+.++.+ +.....+..++..+.+.+||++|.+++...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999998887766666665 445566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+.++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998886653 347899999999999766666667777788888899999999999999999999987


Q ss_pred             HH
Q 028813          168 SI  169 (203)
Q Consensus       168 ~~  169 (203)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.2e-33  Score=202.36  Aligned_cols=165  Identities=30%  Similarity=0.542  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999998888888888888888777877777899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+... ....+.+ .++...+++++++||++|.|++++|.||
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999997664 46999999999998543 3344444 6677788999999999999999999999


Q ss_pred             HHHHHHHh
Q 028813          166 AASIKDRM  173 (203)
Q Consensus       166 ~~~~~~~~  173 (203)
                      .+.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99887553

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.9e-33  Score=194.45  Aligned_cols=162  Identities=37%  Similarity=0.655  Sum_probs=140.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ++||+++|.+|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            3799999999999999999999887766666666543 346677788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      +|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+....++..++++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998886543 35789999999999977666666777788888899999999999999999999999


Q ss_pred             HHHH
Q 028813          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=9.8e-33  Score=194.15  Aligned_cols=159  Identities=28%  Similarity=0.537  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            7999999999999999999999998878888876544 345677888899999999999999988988999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      |++++++++.+. .|+..+.... .+.|+++|+||.|+.+.            +.+..++.++++.+.+ +.++++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5988886654 36899999999998543            3456677788888887 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~  169 (203)
                      |.|++++|+.+++..
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.4e-34  Score=186.81  Aligned_cols=170  Identities=36%  Similarity=0.723  Sum_probs=158.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+|++++|..=+|||||+-++....+...+..+..-.+..+.+.+.+...++.||||+|+++|..+-+.+|+.+|++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            35789999999999999999999999998888887777777888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|||++|+++|+.+..|..+++......+.++||+||+|+.+.+.+..++.+.++...|+.|+++||+++.||.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999888878899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028813          165 MAASIKDRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      |...+.+..+
T Consensus       170 Lt~~MiE~~s  179 (218)
T KOG0088|consen  170 LTAKMIEHSS  179 (218)
T ss_pred             HHHHHHHHhh
Confidence            9988876653

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.2e-32  Score=197.79  Aligned_cols=164  Identities=27%  Similarity=0.560  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|.+++|||||+++|....++..+.|+.+..+ ...+.+++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999999999999999888888887554 456778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++++.+. .|...+.... .+.|++||+||+|+.+.            ..+..++...++.+.++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999984 5777665544 46999999999998542            13667788999999995 899999999


Q ss_pred             CC-CHHHHHHHHHHHHHHHhc
Q 028813          155 ST-NVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       155 ~~-~i~~~~~~l~~~~~~~~~  174 (203)
                      +. ||+++|............
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            88 599999999997765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.5e-32  Score=191.78  Aligned_cols=160  Identities=33%  Similarity=0.640  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++|+|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988877777788877777777777788899999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.++..+..|+..+..... +.|+++|+||+|+.+.. .. ....++....+++++++||++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccccc-CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999977665 79999999999986332 33 23455666778899999999999999999999988


Q ss_pred             HHH
Q 028813          169 IKD  171 (203)
Q Consensus       169 ~~~  171 (203)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-35  Score=191.57  Aligned_cols=174  Identities=43%  Similarity=0.796  Sum_probs=158.9

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC---------CeEEEEEEEeCCCccccccch
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTIT   74 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~   74 (203)
                      ..++.||.+.+|.+|+|||||+.++..+.+......+.++++..+.+.++         +..+.+++|||+|+++|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            45789999999999999999999999999998989999999988877763         245788999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ..|++.+-+++++||+++..+|.+++.|+.++..+... +.-+++++||+|+.+.+.++.++..+++.++++|||++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            99999999999999999999999999999999877664 44489999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCC
Q 028813          154 DSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      +|.++++..+.|.+.+++++++..
T Consensus       165 tg~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887643

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.9e-32  Score=191.86  Aligned_cols=162  Identities=41%  Similarity=0.687  Sum_probs=142.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||++|++++...+..+++.+|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888898888887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ++++.++..+..|+..+... .....|+++|+||.|+.+...  ...+....++.+++++++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999987543 344578999999999855432  334556677788889999999999999999999999


Q ss_pred             HHHHH
Q 028813          167 ASIKD  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88864

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.2e-32  Score=191.60  Aligned_cols=159  Identities=36%  Similarity=0.690  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC--CeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +||+++|.+++|||||+++|.++.+...+.++.+.++....+.+.  +..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988877777888777766667666  677899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |+|++++++++.+..|+..+.... .+.|+++|+||.|+.....+..++...++..++++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999886544 3689999999999977767777888889999999999999999999999999987


Q ss_pred             HH
Q 028813          167 AS  168 (203)
Q Consensus       167 ~~  168 (203)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.6e-32  Score=195.43  Aligned_cols=161  Identities=34%  Similarity=0.578  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3799999999999999999999988877777766544 345666777889999999999999888889999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...++...+ +++++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999886 5888887654 368999999999986543            234556677777776 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIKD  171 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~  171 (203)
                      |.|++++|.+|.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.5e-32  Score=190.84  Aligned_cols=160  Identities=41%  Similarity=0.733  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|+++||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||...+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888788888888888888888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998866555569999999999997666677777888888888999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.4e-32  Score=191.55  Aligned_cols=162  Identities=42%  Similarity=0.748  Sum_probs=142.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+||+++|.+++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            56799999999999999999999998888777777777777778888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  160 (203)
                      +|||++++++++.+..|+..+....    ..+.|+++|+||.|+. .+....++.++++..++ ++++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999998875543    2468999999999986 44566778888888887 5899999999999999


Q ss_pred             HHHHHHHH
Q 028813          161 AFMAMAAS  168 (203)
Q Consensus       161 ~~~~l~~~  168 (203)
                      +|+++.+.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.7e-32  Score=191.22  Aligned_cols=161  Identities=42%  Similarity=0.744  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999887766666655 344566677787889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....+....++..++++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988875543 346899999999999776666777788888888899999999999999999999998


Q ss_pred             HHH
Q 028813          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.9e-32  Score=190.83  Aligned_cols=161  Identities=38%  Similarity=0.657  Sum_probs=139.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|.+++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999888777666654 55667777888888899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      +|++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+...+...++...+++++++||+++.|+.++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998886653 35799999999999876555666667777777889999999999999999999998


Q ss_pred             HHH
Q 028813          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.7e-32  Score=189.66  Aligned_cols=161  Identities=37%  Similarity=0.602  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||++++....+.....++.+.+........++..+.+.+||++|++++...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887776666666666667777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.++..+..|+..+.... .+.|+++|+||+|+...   .......++..++++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999986643 35899999999998432   1234456666778999999999999999999999998


Q ss_pred             HHHHh
Q 028813          169 IKDRM  173 (203)
Q Consensus       169 ~~~~~  173 (203)
                      +.+++
T Consensus       157 ~~~~~  161 (161)
T cd04124         157 AVSYK  161 (161)
T ss_pred             HHhcC
Confidence            87763

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.3e-32  Score=190.77  Aligned_cols=159  Identities=34%  Similarity=0.522  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||++++++..+...+.++.+. .+...+..+...+.+.+||++|..++...+..++..+|++|+|+
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            78999999999999999999998887776666653 33445566777789999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999888765432   468999999999997656666777777888888999999999999999999999


Q ss_pred             HHH
Q 028813          166 AAS  168 (203)
Q Consensus       166 ~~~  168 (203)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3e-32  Score=191.03  Aligned_cols=162  Identities=48%  Similarity=0.879  Sum_probs=144.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhccCCcEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIII   86 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   86 (203)
                      .+||+++|++|+|||||+++++...++..+.++.+.++....+.+++..+.+.+||++|++++. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999988877777888877888888888888999999999998876 567888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC---CCCHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD---STNVEQAF  162 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  162 (203)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+....++..++++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999886654 35799999999999987777778888888888889999999999   89999999


Q ss_pred             HHHHHHH
Q 028813          163 MAMAASI  169 (203)
Q Consensus       163 ~~l~~~~  169 (203)
                      ..|.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3e-32  Score=194.91  Aligned_cols=167  Identities=23%  Similarity=0.342  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhccC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYRG   80 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   80 (203)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.+.+...+.+++..+.+.+|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999888778888776666667778888899999999996543211        2234789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCCC
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDST  156 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  156 (203)
                      +|++|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+...+....+....++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998886654   4579999999999997666566666666654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcc
Q 028813          157 NVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~  175 (203)
                      |++++|+.+.+.+..+.+.
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999988865443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=5e-32  Score=188.62  Aligned_cols=162  Identities=50%  Similarity=0.822  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++++|||||+++|.+..+.....++.+..+....+.+++....+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999988776777777777778888888889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++++++.+..|+..+........|+++++||+|+........+....+...++++++++|+++|.|+.++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776667999999999998766666777788888888899999999999999999999988


Q ss_pred             HH
Q 028813          168 SI  169 (203)
Q Consensus       168 ~~  169 (203)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.9e-32  Score=190.91  Aligned_cols=158  Identities=32%  Similarity=0.602  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+.++..+.+...+.++.. ......+..++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999888877777765 444556677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      |+++++++..+. .|+..+.... .+.|+++|+||.|+.+.            ..+..++..+++.+++ +++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999995 5888876654 46999999999998542            2467788888998888 4999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAAS  168 (203)
Q Consensus       155 ~~~i~~~~~~l~~~  168 (203)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=7e-32  Score=187.51  Aligned_cols=159  Identities=38%  Similarity=0.683  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..++..+|++++|+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            799999999999999999999988777776666533 3556677777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..........++...+++++++||++|.|++++|++|.+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999988886654 34789999999999865 345566777788888999999999999999999999986


Q ss_pred             HH
Q 028813          168 SI  169 (203)
Q Consensus       168 ~~  169 (203)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-32  Score=176.17  Aligned_cols=174  Identities=47%  Similarity=0.868  Sum_probs=164.2

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +..+.+|.+++|.-|+|||.|+..|....+...-+.+.+.++....+.+.++.+++.+||++|+++|+...+.+++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            45789999999999999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      .+.|+|++.+.++..+..|+...+.+..++.-+++++||.|+...+.+..++.++|+.+++..++++|+++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 028813          164 AMAASIKDRMASQP  177 (203)
Q Consensus       164 ~l~~~~~~~~~~~~  177 (203)
                      .-.++++++.+.-+
T Consensus       167 e~akkiyqniqdgs  180 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGS  180 (215)
T ss_pred             HHHHHHHHhhhcCc
Confidence            99999998877533

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=9.6e-32  Score=187.34  Aligned_cols=161  Identities=39%  Similarity=0.633  Sum_probs=138.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||+.++...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc-eEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            479999999999999999999988776666666553 3345566788788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      +|++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..+...+++..++++++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998886543 34789999999999977666666777888888889999999999999999999998


Q ss_pred             HHH
Q 028813          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.2e-31  Score=186.42  Aligned_cols=161  Identities=42%  Similarity=0.767  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+.....++.+.......+...+..+.+.+||++|+..+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998877666666666666677777777789999999999988888998999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++++++.+..|+..+......+.|+++++||+|+.....+..+...+++...+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999877766679999999999998666667777888888889999999999999999999999876


Q ss_pred             H
Q 028813          169 I  169 (203)
Q Consensus       169 ~  169 (203)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2e-31  Score=186.65  Aligned_cols=168  Identities=52%  Similarity=0.905  Sum_probs=146.2

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |. +..+.++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..
T Consensus         1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   79 (169)
T cd04114           1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRS   79 (169)
T ss_pred             CC-CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC
Confidence            55 23567999999999999999999999887776677777777777788888888899999999999888888889999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.+......+++++|+++|.|+++
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  159 (169)
T cd04114          80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEK  159 (169)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence            99999999999999999999999988777666799999999999976666666666777777778999999999999999


Q ss_pred             HHHHHHHHH
Q 028813          161 AFMAMAASI  169 (203)
Q Consensus       161 ~~~~l~~~~  169 (203)
                      +|++|.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.8e-31  Score=190.69  Aligned_cols=156  Identities=29%  Similarity=0.592  Sum_probs=138.3

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh
Q 028813           14 IGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ   93 (203)
Q Consensus        14 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (203)
                      +|.++||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888777888888888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813           94 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus        94 ~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      .++..+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.||.++|.+|.+.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999997765 4699999999999854 3344443 367777889999999999999999999999988765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=2e-31  Score=185.80  Aligned_cols=160  Identities=33%  Similarity=0.612  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +||+++|.+|||||||+++|...  .++..+.++.+.++....+... +..+.+.+||++|...+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999854  5677778888777766666664 56789999999999988888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||.|+.+...+.....+.+...++++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887654 458999999999997766666666667777788999999999999999999999


Q ss_pred             HHHH
Q 028813          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3e-31  Score=186.20  Aligned_cols=165  Identities=42%  Similarity=0.743  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998887777777777777777888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |++++.+++.+..|...+.....    .+.|+++|+||+|+..+.....+..+.++...+ ++++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888877644332    368999999999997655566777778887777 7999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028813          164 AMAASIKDRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      ++.+.+.++.
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887663

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd00154 Rab Rab family

Probab=100.00  E-value=4.8e-31  Score=182.42  Aligned_cols=158  Identities=62%  Similarity=1.019  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|+++||||||++++.+......+.++.+.+.....+..++....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888888888888888899999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |++++++++.+..|+..+......+.|+++++||+|+........++.+.++..++++++++|++++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999998777656799999999999975566677888888888899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=8.3e-31  Score=182.13  Aligned_cols=159  Identities=55%  Similarity=0.932  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||...+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998877667777777777777777877889999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++.+++.+..|++.+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999887664 45789999999999863 345567778888888999999999999999999999887


Q ss_pred             H
Q 028813          168 S  168 (203)
Q Consensus       168 ~  168 (203)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.1e-31  Score=194.55  Aligned_cols=161  Identities=25%  Similarity=0.436  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.|||++|.+.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999888777777765 566677788888899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCH
Q 028813           89 DVTDQESFNNVKQWLNEIDRY---------ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNV  158 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  158 (203)
                      |++++++++.+..|+..+...         ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888543         224689999999999976566777777777654 3688999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIK  170 (203)
Q Consensus       159 ~~~~~~l~~~~~  170 (203)
                      +++|++|...+.
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.7e-31  Score=185.64  Aligned_cols=158  Identities=35%  Similarity=0.644  Sum_probs=135.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV   90 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      |+|+|.+|+|||||+++|.++.+...+.++... .....+..++..+.+.+||++|++.+...+..++..+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            589999999999999999999887777666553 3445667788888999999999999988899999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           91 TDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        91 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..++...++..+++ +++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 5888886654 369999999999986532            2566777888888886 99999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASIK  170 (203)
Q Consensus       157 ~i~~~~~~l~~~~~  170 (203)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=8.3e-31  Score=190.60  Aligned_cols=165  Identities=30%  Similarity=0.436  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc-CCcEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIII   86 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   86 (203)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|.+.+  ....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999877765 455555544667777888888899999999998722  2344556 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |||++++.+++.+.+|+..+.... ..+.|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999886654 2478999999999997777777777788888889999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028813          166 AASIKDRMAS  175 (203)
Q Consensus       166 ~~~~~~~~~~  175 (203)
                      .+.+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9998755444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=9.9e-31  Score=183.03  Aligned_cols=161  Identities=39%  Similarity=0.659  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+++|.++.+...+.++.+. .....+..++..+.+.+||+||+.++..++..+++.++++++|+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            78999999999999999999988876666666653 34566777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |++++.+++.+..|...+.... ..+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|.++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999998886543 3579999999999997766667777777888887 8999999999999999999998


Q ss_pred             HHHH
Q 028813          167 ASIK  170 (203)
Q Consensus       167 ~~~~  170 (203)
                      ..+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=4e-31  Score=184.49  Aligned_cols=160  Identities=34%  Similarity=0.552  Sum_probs=134.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCCcEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~   88 (203)
                      ||+++|++|+|||||+++++...+...+.++... .....+.+++..+.+.+||+||... .......+++.+|++|+|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            5899999999999999999987776666665542 3355667788888999999999885 3445677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC-CCHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAM  165 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l  165 (203)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+.+.+..++...++..++++++++|++++ .|++++|.+|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887654  347999999999998766667777888888888999999999999 5999999999


Q ss_pred             HHHHH
Q 028813          166 AASIK  170 (203)
Q Consensus       166 ~~~~~  170 (203)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            88664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.8e-31  Score=183.87  Aligned_cols=163  Identities=23%  Similarity=0.336  Sum_probs=138.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+.+||+++|.+|+|||||+++|++..+. ..+.++.+..+....+.+++..+.+.+||++|.+.+...+..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999887 77888887777777788888888999999999999988888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|+|++++.+++.+..|+..+..  ..+.|+++|+||.|+.+..........+++..+++ .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            999999999999988888876632  23689999999999865443333445667777777 479999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      .|.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=8.2e-31  Score=186.84  Aligned_cols=158  Identities=28%  Similarity=0.480  Sum_probs=127.6

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCcccccee-eeEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 028813            8 LFKLLLIGDSGVGKSCLLL-RFADDS-----YIESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      .+||+++|.+++|||||+. ++.+..     +...+.||.+. +.+...        ..+++..+.+.+|||+|+++.  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 555433     34455666542 222222        256788899999999998752  


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------CccCC
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVS  132 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~  132 (203)
                      ....+++++|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            3556789999999999999999999997 59998876553 689999999999864                   35678


Q ss_pred             HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          133 YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      .++.++++++++++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            889999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=1.2e-30  Score=180.54  Aligned_cols=153  Identities=24%  Similarity=0.410  Sum_probs=127.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||++++..+.+...+.++ .. .+...+.+++..+.+.+||++|.+.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~-~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GG-RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-cc-ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988776655443 22 3346778888888999999999864     24568899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |++++.+++.+..|+..+..... .+.|+++|+||.|+.  ..+.+..++.+++++.. ++.+++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999876643 568999999999985  34567777788888776 489999999999999999999


Q ss_pred             HHHH
Q 028813          165 MAAS  168 (203)
Q Consensus       165 l~~~  168 (203)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=3.1e-30  Score=181.47  Aligned_cols=159  Identities=35%  Similarity=0.614  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888766666554 344456777888888999999999999888999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |+.++.+++.+. .|+..+... ..+.|+++|+||+|+.+.            ..+..++...++..+++ ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 588877655 457999999999998543            24556777888888886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~  169 (203)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=3.9e-30  Score=180.81  Aligned_cols=157  Identities=32%  Similarity=0.579  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +|++++|++|+|||||++++.++.+...+.++. .+.....+..++..+.+.+||++|+.++...+..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877776665 3455567778888899999999999999998999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++.+++.+. .|+..+.... .+.|+++++||.|+..            .+.+..++...++..+++ .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 6888776543 3689999999999853            235667778888888887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAA  167 (203)
Q Consensus       155 ~~~i~~~~~~l~~  167 (203)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=4e-30  Score=184.40  Aligned_cols=167  Identities=29%  Similarity=0.456  Sum_probs=136.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999887766666553 4555677788878899999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CccCCHHHHHHHHH-HhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA-NKVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..+...+... ..+++++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888766544 4799999999999865 34444444444433 4467899999999999999999999


Q ss_pred             HHHHHHhccCC
Q 028813          167 ASIKDRMASQP  177 (203)
Q Consensus       167 ~~~~~~~~~~~  177 (203)
                      +.+.......+
T Consensus       160 ~~~~~~~~~~~  170 (198)
T cd04147         160 RQANLPYNLSP  170 (198)
T ss_pred             HHhhcccccch
Confidence            98764444343

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=7.5e-30  Score=177.70  Aligned_cols=161  Identities=42%  Similarity=0.708  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+++++...+...+.++.. +........++..+.+.+||+||+.++...+..+++.+|++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999998887766666554 344556667878889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |+.++.++..+..|+..+.... ..+.|+++|+||+|+.............+...++++++++|++++.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988886653 347999999999999764555667777788888899999999999999999999998


Q ss_pred             HHH
Q 028813          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=8.3e-30  Score=181.23  Aligned_cols=167  Identities=35%  Similarity=0.584  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+|+|++|+|||||+++|..+.+...+.++.... ....+..++..+.+.+||++|+..+......++..+|++++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            589999999999999999999777766666555433 3445667777788999999999888776767789999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------CccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------NKVVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      |+++++++..+. .|+..+..... ..|+++|+||+|+.+          .+.+..+....++...++ ++++|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 58988876554 599999999999854          233455677788888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCC
Q 028813          157 NVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      |++++|+++.+.+...++..|
T Consensus       160 ~v~~~f~~l~~~~~~~~~~~~  180 (187)
T cd04129         160 GVDDVFEAATRAALLVRKSEP  180 (187)
T ss_pred             CHHHHHHHHHHHHhcccCccc
Confidence            999999999988876655443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=7e-32  Score=172.73  Aligned_cols=189  Identities=42%  Similarity=0.845  Sum_probs=161.5

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813           12 LLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV   90 (203)
Q Consensus        12 ~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      +++|.+++|||.|+-++..+.+. .....+.++++..+.++.++..+++++|||+|+++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999888766553 45578889999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813           91 TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      .+..+|+..+.|+.++..+....+.+.+++||+|+..++.+..++.+.++..+++|++++|+++|-+++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888899999999999888888889999999999999999999999999999999998887


Q ss_pred             HHhccCCCCCCCCCCcccccCCCCCCCCCCC
Q 028813          171 DRMASQPSMNNARPPTVQIKGQPVAQKSGCC  201 (203)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  201 (203)
                      ...-..+. ......++.+....+..-..||
T Consensus       161 k~~~~~~~-~~~~~~~~~v~~~~k~eia~cc  190 (192)
T KOG0083|consen  161 KLKMGAPP-EGEFADHDSVADEGKGEIARCC  190 (192)
T ss_pred             HhccCCCC-CCccccchhHHhcCCCcccccc
Confidence            65433322 1223444445544444456666

>cd00876 Ras Ras family

Probab=99.97  E-value=8.9e-30  Score=176.58  Aligned_cols=158  Identities=42%  Similarity=0.719  Sum_probs=138.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++|||||||++++++..+.....++.. +.....+..++..+.+.+||+||...+...+..+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877666666655 5556667777777899999999999888888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +++++++..+..|...+..... .+.|+++++||+|+........+....++..++++++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888866655 579999999999998766677788888888888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=3.4e-29  Score=177.11  Aligned_cols=165  Identities=36%  Similarity=0.598  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|.+|+|||||+++|.+..+...+.++..... ...+..++..+.+.+||+||..++...+..++..+|++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998887666666654333 455667777788999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |+++..+++.+..|+..+... ...+.|+++++||+|+...+....+....++..++++++++|++++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999888777543 3356899999999999766666666677778888899999999999999999999999


Q ss_pred             HHHHHhc
Q 028813          168 SIKDRMA  174 (203)
Q Consensus       168 ~~~~~~~  174 (203)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.9e-29  Score=178.21  Aligned_cols=160  Identities=21%  Similarity=0.361  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+||+++|.++||||||++++....+. .+.++.+.+.  ..+..++  +.+.+||+||++++..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999876664 3556666443  3344444  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-----CcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-----IPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  159 (203)
                      +|+|+++++++..+..++..+.. ....+.|++|++||.|+.+..  ..+++........     +.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999999888776665522 222468999999999986542  3344333322111     246689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|+||.+.+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=3.2e-29  Score=177.60  Aligned_cols=166  Identities=23%  Similarity=0.392  Sum_probs=129.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|.+++...+..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998776543 455555555544443 3356899999999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------hCCcEEEeecCCCCCHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~  159 (203)
                      |+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.  ...+....+...      .+++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999999998888888776543 2346899999999998542  333444443321      12468999999999999


Q ss_pred             HHHHHHHHHHHHHhccC
Q 028813          160 QAFMAMAASIKDRMASQ  176 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~~  176 (203)
                      +++++|.+.+.+.++..
T Consensus       160 ~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         160 EGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999997666543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.8e-29  Score=176.53  Aligned_cols=154  Identities=21%  Similarity=0.395  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.++||||||+++|....+. .+.++.+.+..  .+...  .+.+.+||++|++++...+..++..+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999876654 34556655443  33333  4889999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  160 (203)
                      |+|++++.++..+..|+..+.. ....+.|++||+||+|+.+.  ...+++..+...     ..+.++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999888877765532 22346899999999998643  344555554321     234789999999999999


Q ss_pred             HHHHHHH
Q 028813          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.2e-29  Score=174.88  Aligned_cols=156  Identities=20%  Similarity=0.387  Sum_probs=124.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.++||||||+++|.+..+. .+.+|.+....  .+...  .+.+.+||+||+.++...+..++..+|+++||+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999987654 35556554443  34444  4889999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC------CcEEEeecCCCCCHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG------IPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++++.++..+..|+..+... ...+.|+++|+||+|+.+.  ...+++++++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999998888877433 2245899999999998542  45565666553222      368899999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          163 MAMAASIKDR  172 (203)
Q Consensus       163 ~~l~~~~~~~  172 (203)
                      +||.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=2.9e-30  Score=179.87  Aligned_cols=153  Identities=22%  Similarity=0.355  Sum_probs=123.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      .|+++|.+|||||||+++|.+..+...+.++.+...  ..+  +...+.+.+||++|+.++...+..+++++|++|+|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEE--eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            479999999999999999998877777777766442  233  3345899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH----HHHHHHHHHhCCcEEEeecCC------CCCHH
Q 028813           90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ETAKAFADEIGIPFMETSAKD------STNVE  159 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  159 (203)
                      ++++.++..+..|+..+.... .+.|+++|+||.|+........    .....++.+.++.++++||++      ++||+
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999998888888775433 5799999999999866543221    123445556678899999888      99999


Q ss_pred             HHHHHHHH
Q 028813          160 QAFMAMAA  167 (203)
Q Consensus       160 ~~~~~l~~  167 (203)
                      ++|+.+++
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.6e-28  Score=172.88  Aligned_cols=159  Identities=33%  Similarity=0.661  Sum_probs=131.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.++|++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999888777777665443 346677888889999999999998888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      |++++++++.+. .|+..+.... .+.|+++|+||.|+.+..            .+.....++++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 4887776543 368999999999985432            2345566777777764 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~  169 (203)
                      |.|++++|.+|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.9e-29  Score=175.62  Aligned_cols=161  Identities=24%  Similarity=0.396  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|+++||||||++++..+.+.. ..++.+.++.  .+...+  +.+.+||++|++++...+..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998766643 4556654443  344443  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEID-RYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..++..+. .....+.|++||+||.|+.+..  ..+++.....     ...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            9999999999988877666552 2222468999999999985432  2232222211     112356799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 028813          160 QAFMAMAASIKDRM  173 (203)
Q Consensus       160 ~~~~~l~~~~~~~~  173 (203)
                      ++|+||.+.+.+.+
T Consensus       168 e~~~~l~~~i~~~~  181 (182)
T PTZ00133        168 EGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887765

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.8e-29  Score=177.68  Aligned_cols=157  Identities=20%  Similarity=0.369  Sum_probs=120.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+||+++|.++||||||+++|..+.+. .+.++.+.++.  .+...  .+.+.+||++|+.++...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            35699999999999999999999866653 35566665443  33344  388999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.+++...+|+..+.. ....+.|++||+||.|+.+..  ..+++......     ..+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            99999999999988887776632 222468999999999986432  22333322211     12357789999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.4e-29  Score=175.51  Aligned_cols=152  Identities=22%  Similarity=0.401  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.++||||||++++..+.+. .+.++.+....  .+...  .+.+.+||++|++++...+..+++++|++|||+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877665 45666665443  34443  488999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHH----HhCCcEEEeecCCCCCHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEID-RYASDNVNKLLVGNKCDLTANKVVSYETA-KAFAD----EIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      |++++.++..+..|+..+. .....+.|+++++||.|+.+..  ..+++ ..+..    ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999998888776653 2222458999999999985432  22222 22211    123467899999999999999


Q ss_pred             HHHHH
Q 028813          163 MAMAA  167 (203)
Q Consensus       163 ~~l~~  167 (203)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.4e-28  Score=171.28  Aligned_cols=157  Identities=36%  Similarity=0.652  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||+..+.......++.+|++++|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999887666665554 444556677788889999999999988877888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------CCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV-----------VSYETAKAFADEIGI-PFMETSAKDS  155 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (203)
                      |++++.++.... .|+..+..... +.|+++|+||+|+.+...           +..+....+...+++ +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999998887765 47777765443 799999999999865542           345667777778887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~~i~~~~~~l~~  167 (203)
                      .|+.++|++|.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.2e-28  Score=173.21  Aligned_cols=156  Identities=24%  Similarity=0.400  Sum_probs=122.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..++|+++|++|||||||+++|.+... ....++.+  +....+.+++  +.+.+||+||+..+...+..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            35678999999999999999999998754 33445544  3334455554  7899999999998888889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  158 (203)
                      ++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.+..  ..+++..+..     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            999999999999888888776633 223578999999999986533  3444544442     23578999999999999


Q ss_pred             HHHHHHHHH
Q 028813          159 EQAFMAMAA  167 (203)
Q Consensus       159 ~~~~~~l~~  167 (203)
                      +++|++|.+
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=2.8e-28  Score=172.96  Aligned_cols=167  Identities=39%  Similarity=0.619  Sum_probs=153.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.+|+|||+|..+|....+...+.|+.+ +.+.+.+.+++..+.+.|+||+|...+..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            458999999999999999999999999999999887 7788888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      ||+++++.||+.+..+++.|... .....|+++|+||+|+...+.+..++.+.++..++++++++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999999988443 33567999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028813          166 AASIKDRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+...+.
T Consensus       161 ~r~~~~~~~  169 (196)
T KOG0395|consen  161 VREIRLPRE  169 (196)
T ss_pred             HHHHHhhhc
Confidence            999887444

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=3.1e-28  Score=170.09  Aligned_cols=159  Identities=26%  Similarity=0.386  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|||||||+++|.++.++..+..+.  ........+.+..+++.+||++|...+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988765533322  122344455667789999999999887777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHH
Q 028813           89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        89 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+....  ..+....+...+.  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 58888866544 7999999999999664432  1233333444333  3899999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.7e-27  Score=172.93  Aligned_cols=166  Identities=32%  Similarity=0.576  Sum_probs=142.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999888888877888888888888888788888999999999999998888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +++|+|+++..++..+..|+..+.... .+.|+++++||.|+.+. ....+ ...++...++.++++|+++|.|++++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999887654 46899999999998543 23333 3456677789999999999999999999


Q ss_pred             HHHHHHHHH
Q 028813          164 AMAASIKDR  172 (203)
Q Consensus       164 ~l~~~~~~~  172 (203)
                      +|.+.+...
T Consensus       162 ~ia~~l~~~  170 (215)
T PTZ00132        162 WLARRLTND  170 (215)
T ss_pred             HHHHHHhhc
Confidence            999888753

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.5e-27  Score=170.43  Aligned_cols=148  Identities=24%  Similarity=0.431  Sum_probs=124.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-----CeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +||+++|.+++|||||+++|.+..+...+.++.+.++....+.++     +..+.+.+||++|++++..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877776666663     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhh-------------------cCCCCcEEEEEeCCCCCCCccCCHH----HHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRY-------------------ASDNVNKLLVGNKCDLTANKVVSYE----TAKAFA  140 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~p~ilv~nK~D~~~~~~~~~~----~~~~~~  140 (203)
                      +|+|||++++.+++.+..|+.++...                   ...+.|++||+||.|+.+.+.....    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999998553                   1246899999999999765444333    245677


Q ss_pred             HHhCCcEEEeecCCCC
Q 028813          141 DEIGIPFMETSAKDST  156 (203)
Q Consensus       141 ~~~~~~~~~~Sa~~~~  156 (203)
                      ...+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8889999998888654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.9e-27  Score=167.10  Aligned_cols=157  Identities=32%  Similarity=0.501  Sum_probs=125.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|+.+|||||+++++...... ...||.+  +....+.+.+  +.+.+||.+|+..++..|+.++..+|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            67899999999999999999999976543 3555655  4455666666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------hCCcEEEeecCCCCCH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------IGIPFMETSAKDSTNV  158 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i  158 (203)
                      ||+|.++.+.+.+..+.+..+-. ....+.|+++++||.|+.+.  ...+++......      ..+.++.||+.+|+|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999999888888776666532 23347999999999998653  344555544322      2356999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      .+.++||.+++
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3e-28  Score=169.38  Aligned_cols=152  Identities=20%  Similarity=0.349  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +|+++|.++||||||+++|.+... ...+.++.+...  ..+...  .+.+.+||+||+.++...+..++..+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 445556665433  233333  478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |++++.++..+..|+..+...   ...+.|+++|+||+|+.+..  ...++.....     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            999999988888887766432   23479999999999986532  2222222211     1134689999999999999


Q ss_pred             HHHHHHH
Q 028813          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|+||.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.9e-28  Score=170.27  Aligned_cols=153  Identities=23%  Similarity=0.326  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|.++||||||+++|.+. +...+.++.+..  ...+..++  +.+.+||+||+..+...+..+++++|++|+|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555566666643  34455544  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCC-HH---HHHHHHHHh--CCcEEEeecCCC------C
Q 028813           90 VTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVS-YE---TAKAFADEI--GIPFMETSAKDS------T  156 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~-~~---~~~~~~~~~--~~~~~~~Sa~~~------~  156 (203)
                      ++++.+++.+..|+..+.... ..+.|+++|+||.|+.+..... ..   ....++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999998888775432 2478999999999986543211 01   112222222  357888999998      8


Q ss_pred             CHHHHHHHHHH
Q 028813          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 ~i~~~~~~l~~  167 (203)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=5.7e-27  Score=164.51  Aligned_cols=144  Identities=40%  Similarity=0.639  Sum_probs=127.5

Q ss_pred             CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q 028813           32 SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS  111 (203)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  111 (203)
                      .+...+.+|.+.++....+.+++..+.+.||||+|++++...+..+++.+|++|+|||++++.+++.+..|+..+.....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45667788888888888888999999999999999999999999999999999999999999999999999998866555


Q ss_pred             CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          112 DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       112 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      ...|++||+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|.+.+.+....
T Consensus        84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            5789999999999976666777788888888899999999999999999999999998765443

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=3.7e-27  Score=156.09  Aligned_cols=163  Identities=23%  Similarity=0.394  Sum_probs=130.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+++++|+++|..||||||++++|.+... ....|+.+  +..++..+++  +++.+||.+|+..+++.|++|+...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            46799999999999999999999998773 34445555  5566666666  8999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCc---cCC-HHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANK---VVS-YETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      |||+|.+|+..+++....+..+ ....--+.|+++++||.|+...-   .+. .-.+++++....++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            9999999998887776655544 22233468999999999986321   111 122345556678999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      +.++||.+.++++
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=3.6e-27  Score=165.85  Aligned_cols=154  Identities=21%  Similarity=0.351  Sum_probs=118.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|++++|||||++++..+.+.. ..++.+.+.  ..+..++  ..+.+||+||..++...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999877654 345554333  3444444  789999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHH-HH----HHhCCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA-FA----DEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |+|+++++++.....++..+... ...+.|+++++||+|+.+.  ...+++.+ +.    ...+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999998888777766655322 2246899999999998542  23333322 21    12346799999999999999


Q ss_pred             HHHHHHH
Q 028813          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      +|+||.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3.2e-27  Score=168.46  Aligned_cols=156  Identities=26%  Similarity=0.349  Sum_probs=122.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+..+|+++|++|||||||++++.+..+. .+.++.+.  ....+.+++  ..+.+||+||+.++...+..++..+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999987653 34444443  334555555  78899999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH----------------hCCcEE
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE----------------IGIPFM  148 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  148 (203)
                      +|+|+++..++.....|+..+.... ..+.|+++++||+|+.+  .+..++++.....                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999988888777777664332 34689999999999854  3445566555532                124689


Q ss_pred             EeecCCCCCHHHHHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +|||++|.|++++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=166.33  Aligned_cols=166  Identities=33%  Similarity=0.603  Sum_probs=147.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ...+|+.|||..++|||+|+-.+..+.++..+.|+.. +.+...+.++ ++.+.+.+|||+|+++|..++..-+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999987 6777778885 9999999999999999999888889999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEe
Q 028813           85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  150 (203)
                      +++|++.++.+++++ .+|+.++..+.+ +.|++||++|.|+.++            ..+..++...++.+.| ..|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 559999988885 6999999999999743            2467788899999999 589999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      ||+++.|++++|+..+.......
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999988877543

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=4e-29  Score=167.82  Aligned_cols=170  Identities=30%  Similarity=0.582  Sum_probs=158.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..+|++|+|..++||||+|++++.+-+...+..+.+.++....+.+.+.++++.+||++|+++|..+.+.+++++.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            36889999999999999999999999988888888999888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++||+-+|+.+|+...+|++.+..... .+|.++|-||+|+.++..+...+.+.+++...+.++.+|++...|+..+|.+
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            999999999999999999999966555 5999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+++.+++.+
T Consensus       176 LaeK~~q~~kq  186 (246)
T KOG4252|consen  176 LAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99999888776

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2.4e-27  Score=164.53  Aligned_cols=152  Identities=26%  Similarity=0.439  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|++|||||||+++|.+..+.. ..++.+.+.  ..+... ..+.+.+||++|...+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887653 345554333  333333 34789999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHH------HHHhCCcEEEeecCCCCCHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF------ADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++++.++..+..|+..+... ...+.|+++|+||+|+....  ..+++...      ....+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99998888888877766332 22478999999999985421  22222221      11234579999999999999999


Q ss_pred             HHHHH
Q 028813          163 MAMAA  167 (203)
Q Consensus       163 ~~l~~  167 (203)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=5.3e-27  Score=163.93  Aligned_cols=152  Identities=29%  Similarity=0.441  Sum_probs=115.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +|+++|++|+|||||+++|.+...      ...+.++.+...  ..+.+++  ..+.+||+||+..+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      122334443333  3455554  789999999999998889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-------hCCcEEEeecCCC
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGIPFMETSAKDS  155 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  155 (203)
                      +++|+|+++++++.....|+..+... ...+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            99999999988888887777766432 2347899999999998553  333444444322       2468999999999


Q ss_pred             CCHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~~i~~~~~~l~~  167 (203)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=4.2e-27  Score=163.03  Aligned_cols=151  Identities=25%  Similarity=0.414  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+|||||||++++.+... ....++.+..  ...+.+.+  ..+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 3444454433  34444544  789999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +++++++.....|+..+... ...+.|+++++||+|+....  ..++..+...     ...++++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            99999998888877766442 33578999999999986543  2233333322     2346899999999999999999


Q ss_pred             HHHH
Q 028813          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.8e-26  Score=159.88  Aligned_cols=151  Identities=25%  Similarity=0.394  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|.+++|||||+++|....... ..++.+.+.  ..+...  ...+.+||+||..++...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998766543 344444333  234443  3789999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHHH
Q 028813           90 VTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++++.++.....++..+ ......+.|+++|+||+|+.+..  ...++.....     ..+++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99988877666655433 33333468999999999986432  2222222111     1124699999999999999999


Q ss_pred             HHHH
Q 028813          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=3.4e-26  Score=174.58  Aligned_cols=164  Identities=18%  Similarity=0.184  Sum_probs=123.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG   80 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (203)
                      ...|+|+|.||||||||+++|++........+.++.......+.+.+ ..++.+||+||...       ....+...++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            34699999999999999999998654434444555556666665532 25789999999632       11122334567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      ++++++|+|+++.++++.+..|..++..+..  .++|+++|+||+|+.+......+..+.+....+++++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988788888899998876643  36899999999998765444334445555566789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKDR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      ++++++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=2.6e-26  Score=160.58  Aligned_cols=155  Identities=15%  Similarity=0.157  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------chhhhccC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSSYYRG   80 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~   80 (203)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+..+  .+.+.+|||||......         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999877643333333333444344343  37899999999742110         01111233


Q ss_pred             CcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           81 AHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      .|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+.+......  ..++....+++++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCH
Confidence            689999999998654  355566777775543 3689999999999965443322  44555555689999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      +++|++|.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2.8e-26  Score=162.65  Aligned_cols=156  Identities=21%  Similarity=0.266  Sum_probs=119.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|||||||+++|.+..+. .+.++.+.  ....+..++  +++.+||+||...+...+..++..+|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999987653 23344332  233444444  78999999999988888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------------hCCcEEEeec
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA  152 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  152 (203)
                      +|+|+++++++.....++..+.. ....+.|+++|+||.|+..  .+..+++.+....            ....+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            99999999988888777766532 2224689999999999853  2344545443311            1245999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAAS  168 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~  168 (203)
                      +++.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.9e-25  Score=167.01  Aligned_cols=140  Identities=25%  Similarity=0.516  Sum_probs=120.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-------------eEEEEEEEeCCCcccccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-------------KTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~~   72 (203)
                      ...+||+++|..+||||||+++|.+..+...+.++.+.++....+.+++             ..+.+.|||++|++++..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            4679999999999999999999999888778888888877777666542             468899999999999999


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCc---c---CCHH
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------DNVNKLLVGNKCDLTANK---V---VSYE  134 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ilv~nK~D~~~~~---~---~~~~  134 (203)
                      ++..+++++|++|+|||++++.+++.+..|+..+.....            ..+|++||+||+|+...+   .   ...+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            999999999999999999999999999999999976531            248999999999996542   1   3578


Q ss_pred             HHHHHHHHhCC
Q 028813          135 TAKAFADEIGI  145 (203)
Q Consensus       135 ~~~~~~~~~~~  145 (203)
                      +.++++.++++
T Consensus       179 ~a~~~A~~~g~  189 (334)
T PLN00023        179 AARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHcCC
Confidence            89999998874

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=2.9e-26  Score=160.60  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhh---ccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d   82 (203)
                      +|+++|.+|||||||+++|.+........+..+.+.....+..++. ..+.+|||||...    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999976542222222233333333444442 3789999999632    12223333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCH
Q 028813           83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNV  158 (203)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  158 (203)
                      ++++|+|++++ ++++.+..|.+.+.....  .+.|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888889888866542  36899999999998654433 3334445555 3688999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      +++|++|.++
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.3e-25  Score=158.63  Aligned_cols=154  Identities=24%  Similarity=0.331  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------cceeeeEEEEE--Ee---CCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIRTV--EQ---DGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+++|||||+++|++..       ....+.+      ..+.+......  .+   ++..+.+.+|||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998632       1111111      11223332222  22   5567889999999999998


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---cEE
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---PFM  148 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  148 (203)
                      ..+..++..+|++|+|+|++++.+......|....    ..++|+++|+||+|+.+..  ......+++..+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88999999999999999999876655555554322    2368999999999985432  12233455566665   489


Q ss_pred             EeecCCCCCHHHHHHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.6e-25  Score=154.82  Aligned_cols=151  Identities=25%  Similarity=0.451  Sum_probs=118.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV   90 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      |+++|++|||||||+++|.+..+...+.++.+....  .+..++  +.+.+||+||...+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            799999999999999999999887777777765544  344444  7899999999999988899999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHHHHHHH
Q 028813           91 TDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +++.++.....|+..+.. ....+.|+++|+||+|+.+...  ........     ....++++++|+++|.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            999888887777666532 2224689999999999865432  12221111     112367899999999999999999


Q ss_pred             HHH
Q 028813          165 MAA  167 (203)
Q Consensus       165 l~~  167 (203)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.94  E-value=2.4e-26  Score=156.08  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--cC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RG   80 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   80 (203)
                      |+|+++|.||+|||||+|+|++........|+.+.+.....+...+  ..+.++|+||..+...      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999987777778888888888888887  6888999999543322      223333  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      .|++|+|+|++..+.-..+   ..++.   ..++|+++++||+|......+.. ....+.+..++|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~---e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLL---ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHH---HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHH---HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999875432222   22332   23799999999999865444332 25667778899999999999999999


Q ss_pred             HHHHH
Q 028813          161 AFMAM  165 (203)
Q Consensus       161 ~~~~l  165 (203)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=9.7e-26  Score=162.53  Aligned_cols=157  Identities=17%  Similarity=0.158  Sum_probs=114.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   76 (203)
                      +..++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+||+||....         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            45689999999999999999999987643333333333444444555442 37899999997321         1111 1


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+.....     ......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998887777777777766555578999999999986543221     3344556789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASI  169 (203)
Q Consensus       157 ~i~~~~~~l~~~~  169 (203)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999997653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=7.4e-25  Score=151.18  Aligned_cols=157  Identities=34%  Similarity=0.533  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||++++.+...+..+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.+++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999998877777777777777766777776688999999999888888888888999999999


Q ss_pred             ECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           89 DVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        89 d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|.
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            98766 5555554 66666655554478999999999996544 233333334444457899999999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=9.2e-25  Score=153.46  Aligned_cols=153  Identities=25%  Similarity=0.392  Sum_probs=115.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+++|++|||||||++++.+.... ...++.+.  ....+...+  ..+.+||++|...+...+..+++.+|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            356799999999999999999999987653 23444443  334445555  6889999999988888888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--------CcEEEeecCCC
Q 028813           85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKDS  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~  155 (203)
                      ++|+|+.+..++.....++..+ ......++|+++++||+|+.+...  .+.+   ....+        .+++++||++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence            9999999988887776666554 333334689999999999855321  2222   22223        24789999999


Q ss_pred             CCHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~~i~~~~~~l~~  167 (203)
                      .|++++|+||.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999965

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=4.7e-25  Score=153.48  Aligned_cols=155  Identities=16%  Similarity=0.180  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.|+++|.+|+|||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++++......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   2222333444444444455542 368999999999888766667788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHH---hCCcEEEeecCCCCCHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADE---IGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|+|+++... ......+..+...  ...|+++++||+|+.+...  ...+...+....   .+.+++++|++++.|+++
T Consensus        80 ~V~d~~~~~~-~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (164)
T cd04171          80 LVVAADEGIM-PQTREHLEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE  156 (164)
T ss_pred             EEEECCCCcc-HhHHHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence            9999987321 1111222222221  1248999999999865421  112233333333   357999999999999999


Q ss_pred             HHHHHHH
Q 028813          161 AFMAMAA  167 (203)
Q Consensus       161 ~~~~l~~  167 (203)
                      ++++|.+
T Consensus       157 l~~~l~~  163 (164)
T cd04171         157 LKEYLDE  163 (164)
T ss_pred             HHHHHhh
Confidence            9998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.93  E-value=1.3e-24  Score=150.43  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=111.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--cCCcEE
Q 028813           13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGI   84 (203)
Q Consensus        13 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~   84 (203)
                      |+|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||...+..      .+..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765555556666666666677766  5789999999876653      244455  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|+|+.++....   .+...+..   .++|+++|+||+|+.+...... ....+...++++++++|++++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998865432   33333332   3689999999999976544333 345667777899999999999999999999


Q ss_pred             HHHHH
Q 028813          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.2e-25  Score=149.96  Aligned_cols=160  Identities=24%  Similarity=0.426  Sum_probs=129.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ....+|+++|..+|||||++.+|..++.... .||.+  +....+.+.+  +++++||.+|+.+++..|+.++++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4679999999999999999999988776544 66666  5556666665  89999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  159 (203)
                      ||+|.+|++.+.++++.+..+-.+.. .+.|+++++||.|++..  ++..++.+....     ..+.+-.|+|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999998887776644433 57999999999998654  333334333322     23578899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      +.++||.+.+...
T Consensus       168 egl~wl~~~~~~~  180 (181)
T KOG0070|consen  168 EGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988653

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=2.8e-24  Score=164.03  Aligned_cols=160  Identities=18%  Similarity=0.207  Sum_probs=117.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc----ccch---hhhccC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTIT---SSYYRG   80 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~---~~~~~~   80 (203)
                      ...|+|+|.||||||||+++|..........+.++.......+.+++ ..++.+||+||....    ..+.   ...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            45699999999999999999998654333333444455555555543 367899999996421    1222   223457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813           81 AHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS  155 (203)
Q Consensus        81 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      ++++++|+|+++.   ++++.+..|.+++..+..  ..+|+++|+||+|+.+... ..+..+.+...++.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677788888887765532  3689999999999865432 233445566666789999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASI  169 (203)
Q Consensus       156 ~~i~~~~~~l~~~~  169 (203)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=7.7e-24  Score=144.94  Aligned_cols=153  Identities=55%  Similarity=0.903  Sum_probs=121.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC
Q 028813           13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        13 v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      ++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998776 44444444 6667777777667789999999998888777788889999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH-HHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           92 DQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKVVSYET-AKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        92 ~~~s~~~~~~~~-~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ++.+...+..|. .........+.|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888888772 23334455679999999999986654333222 3344455678999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=9e-25  Score=148.72  Aligned_cols=134  Identities=25%  Similarity=0.297  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-----ccccchhhhccCCcEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI   84 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~   84 (203)
                      ||+++|.+|+|||||+++|.+...  .+.++.+       +.+..     .+||+||..     .+.... ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--cccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            799999999999999999998764  2222222       11221     689999972     233332 347899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|+|++++.++.. ..|...+      ..|+++|+||+|+.+. ....+..++++...+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887644 2343322      2499999999998643 3345666777777775 899999999999999999


Q ss_pred             HHH
Q 028813          164 AMA  166 (203)
Q Consensus       164 ~l~  166 (203)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=3.6e-25  Score=159.17  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC-----------ccccccchh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITS   75 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~   75 (203)
                      ..++|+++|.+|+|||||+++|.+..+.....++.+  .....+...    .+.+|||||           .+.+...+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            678999999999999999999998776555555443  333333332    588999999           344555444


Q ss_pred             hhcc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH
Q 028813           76 SYYR----GAHGIIIVYDVTDQESF-N---------NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD  141 (203)
Q Consensus        76 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~  141 (203)
                      .++.    .++++++|+|..+.... +         .-......+.   ..+.|+++|+||+|+.+..   .+...++..
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~  155 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE  155 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence            4543    45788889987653211 0         0011122222   2368999999999986543   234455555


Q ss_pred             HhCC---------cEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          142 EIGI---------PFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       142 ~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      .+++         +++++||++| |+++++++|.+.+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            5554         5899999999 99999999998875443

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=3.4e-24  Score=149.77  Aligned_cols=157  Identities=17%  Similarity=0.136  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      .|+++|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999877655544444434433344433 13478899999999888888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHHHH------HhCCcEEEeecCCCCCHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFAD------EIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      |+++....+.. ..+..+..   .+.|+++|+||+|+....... ......+..      ...++++++|++++.|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99875322211 11222222   368999999999986432111 111111111      11368999999999999999


Q ss_pred             HHHHHHHHH
Q 028813          162 FMAMAASIK  170 (203)
Q Consensus       162 ~~~l~~~~~  170 (203)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=6e-24  Score=163.52  Aligned_cols=155  Identities=20%  Similarity=0.195  Sum_probs=114.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc---------ccccchhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~   76 (203)
                      +..++|+++|.+|+|||||+|+|++........++.+.+.....+.+++. ..+.+|||+|..         .+... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            35589999999999999999999997754444444555666667777432 588999999972         22221 22


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      .+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+...     ..... ....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCC
Confidence            477899999999999988877777777666665555789999999999864321     11111 123568999999999


Q ss_pred             CHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 ~i~~~~~~l~~~  168 (203)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=3.5e-23  Score=150.73  Aligned_cols=168  Identities=40%  Similarity=0.620  Sum_probs=137.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|++|||||||+++|.+..+...+.++.+..+........+..+++.+||++|+.+++..+..++..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999988888887777777777666557899999999999999999999999999999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHh---CCcEEEe
Q 028813           87 VYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEI---GIPFMET  150 (203)
Q Consensus        87 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  150 (203)
                      ++|..+ ..+.+....|...+......+.|+++++||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999998 5556666789999888776679999999999997653            22222222222222   3348999


Q ss_pred             ecC--CCCCHHHHHHHHHHHHHHHhc
Q 028813          151 SAK--DSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       151 Sa~--~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      |++  .+.++.++|..+...+.+...
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            999  999999999999999875544

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=3.4e-24  Score=150.86  Aligned_cols=154  Identities=23%  Similarity=0.258  Sum_probs=108.2

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCcccc----ccc---hhhhccCCcEE
Q 028813           13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF----RTI---TSSYYRGAHGI   84 (203)
Q Consensus        13 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~   84 (203)
                      ++|++|||||||+++|.+........+.++.+.....+.++ +  ..+.+||+||....    ...   ....+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999876422222333334444445455 4  67899999996321    122   23346789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813           85 IIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        85 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      ++|+|+.++      .++..+..|...+.....       .+.|+++|+||+|+..................+.+++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      467777777777754432       3689999999999965543322222233344567899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~  168 (203)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=7.4e-24  Score=169.72  Aligned_cols=180  Identities=21%  Similarity=0.241  Sum_probs=125.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (203)
                      ...+|+|+|.+|||||||+++|++.... ....++.+.+.....+.+.+  ..+.+|||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4578999999999999999999987642 23445555555556666666  5688999999652        33335556


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +..+|++|+|+|++++.+... ..+...+..   .++|+++|+||+|+....   .+..+.+  ..++ .++++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence            889999999999998755332 233333432   368999999999985432   1111222  2343 45799999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      |++++|++|.+.+.+....  ........++.+.+.++.+||+
T Consensus       186 gi~eL~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~~nvGKSS  226 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRV--GSASGGPRRVALVGKPNVGKSS  226 (472)
T ss_pred             CcHHHHHHHHhhccccccc--ccccccceEEEEECCCCCCHHH
Confidence            9999999999988652221  1112356788888999998874

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=2.8e-23  Score=164.34  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=118.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc----c---cchhhhcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----R---TITSSYYR   79 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~   79 (203)
                      ....|+|+|.||||||||+++|++........+.++.......+...+  ..+.+||+||....    .   ......+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            446799999999999999999998765444445555566666676666  68999999995321    1   11222457


Q ss_pred             CCcEEEEEEECCC----hhhHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC
Q 028813           80 GAHGIIIVYDVTD----QESFNNVKQWLNEIDRYA-----------SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG  144 (203)
Q Consensus        80 ~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~  144 (203)
                      .+|++|+|+|+++    ++.++.+..+..++..+.           ..++|+++|+||+|+.+.... .+.........+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence            7999999999975    234555555555554332           136899999999998654332 222333334557


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813          145 IPFMETSAKDSTNVEQAFMAMAASIKDRMASQ  176 (203)
Q Consensus       145 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  176 (203)
                      ++++++||+++.|+++++.+|.+.+...+...
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~  346 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARAAE  346 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccc
Confidence            89999999999999999999999998776543

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=1.4e-23  Score=157.14  Aligned_cols=157  Identities=16%  Similarity=0.080  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--------cchhhhccC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYRG   80 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   80 (203)
                      +|+++|.+|||||||+|+|++..... +..+.++..........++  .++.+|||||.....        ......+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987542 2222222222222222233  578999999964321        113345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  159 (203)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876543  333333432   3689999999999864322 22333444444444 79999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028813          160 QAFMAMAASIKDRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      +++++|.+.+.+.-.
T Consensus       154 ~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       154 FLAAFIEVHLPEGPF  168 (270)
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999888755433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=4.1e-23  Score=142.55  Aligned_cols=146  Identities=22%  Similarity=0.257  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhcc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYR   79 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   79 (203)
                      ++|+++|++|+|||||++++.+.... ....++.+.+.....+...+  ..+.+||+||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 22334444455555555554  67899999997654321        224567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .......+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998776554433322      336899999999998764432       233446789999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=6.6e-24  Score=151.78  Aligned_cols=160  Identities=16%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT   74 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (203)
                      -+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+......+.+||+||+.++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999986  3332221            1223333444444444455889999999999998889


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-CCHHHHHHHHH-------HhCCc
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKAFAD-------EIGIP  146 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  146 (203)
                      ..+++.+|++++|+|+++.. ......++..+.   ..+.|+++|+||+|+.+... ...+++.++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 122233333332   23689999999999864332 11233344432       23678


Q ss_pred             EEEeecCCCCCHHHH------HHHHHHHHHHH
Q 028813          147 FMETSAKDSTNVEQA------FMAMAASIKDR  172 (203)
Q Consensus       147 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~  172 (203)
                      ++++||++|.|+.++      +++|.+++.++
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            999999999887555      44555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=8e-24  Score=139.12  Aligned_cols=173  Identities=26%  Similarity=0.496  Sum_probs=149.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -.+||.++|.+..|||||+-++.+.....++..+.+..+..+++.+.+.+..+.+||.+|++++..+......++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            46899999999999999999999999888889999999999999999999999999999999999888888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc---CCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KV---VSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      +||++.+.++..+.+|+.+.+......+| ++|++|.|+.-.  .+   ....+.+.+++-++++++.||+-++.|+..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            99999999999999999999887777677 567999997321  11   1123456677888999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCC
Q 028813          162 FMAMAASIKDRMASQPSMN  180 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~~~~~  180 (203)
                      |..+..++.+.....+...
T Consensus       178 FK~vlAklFnL~~ti~~~~  196 (205)
T KOG1673|consen  178 FKIVLAKLFNLPWTIPEIL  196 (205)
T ss_pred             HHHHHHHHhCCceeccccc
Confidence            9999999987766665443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=7.2e-23  Score=160.11  Aligned_cols=161  Identities=19%  Similarity=0.232  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhh---ccCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGA   81 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~   81 (203)
                      ..|+|+|.||||||||+++|++........+.++.......+.+.+ ...+.+||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3799999999999999999998764333344445555555555541 25799999999632    11222333   4568


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           82 HGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        82 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      +++++|+|+++.   +.++.+..|.+++..+..  .++|+++|+||+|+...    .+..+.+...++.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   567777778877766543  36899999999998432    244555666667889999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 028813          157 NVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~  174 (203)
                      |+++++++|.+.+.+...
T Consensus       314 GI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        314 GLDELLYAVAELLEETPE  331 (424)
T ss_pred             CHHHHHHHHHHHHHhCcc
Confidence            999999999988876543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=6.1e-24  Score=170.19  Aligned_cols=166  Identities=22%  Similarity=0.239  Sum_probs=117.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccc-
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI-   73 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-   73 (203)
                      +..++|+++|.+|+|||||+++|++... ..+..++++.+.....+..++  ..+.+|||||..+          +... 
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence            3568999999999999999999998764 234556666666666777776  4568999999532          2211 


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHH-HHHHhCCcEEEe
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKA-FADEIGIPFMET  150 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~  150 (203)
                      ...+++.+|++++|+|++++.+...+. ++..+.   ..+.|+++|+||+|+.+....  ...++.. +.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence            123568999999999999887766553 333332   347899999999999653211  0111111 222234789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      ||++|.|++++|..+.+.+..+....+
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~~~i~  389 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWDTRIP  389 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999998876666544

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=9.3e-23  Score=161.16  Aligned_cols=154  Identities=24%  Similarity=0.273  Sum_probs=117.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      ..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998653 234445666677777788877  66789999997654332        2346


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      ++.+|++++|+|++++.+.+..  |+..+.   ..+.|+++|+||+|+.+.      ....+...++.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988776554  555443   236899999999998543      12344556678899999997 69


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 028813          158 VEQAFMAMAASIKDRMA  174 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~  174 (203)
                      ++++|+.|.+.+.+...
T Consensus       348 I~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       348 IKALVDLLTQKINAFYS  364 (442)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=6.6e-23  Score=157.56  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=111.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccch-------hh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTIT-------SS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~   76 (203)
                      .+.++|+++|.+|||||||+++|++..+... ..+.++.......+..++  .++.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            4567999999999999999999998776421 222223334444555555  5789999999743 22211       12


Q ss_pred             hccCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAK  153 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  153 (203)
                      .+..+|++++|+|..+.  +.... .|+..+...   +.|.++|+||+|+.+.   ....+.++.....  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            36789999999997653  33332 344444332   4677889999998543   2344555554443  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCC
Q 028813          154 DSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      +|.|+++++++|.+.+.+.-.-.+
T Consensus       200 tg~gv~eL~~~L~~~l~~~~~~~~  223 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKISPWLYA  223 (339)
T ss_pred             CccCHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999998876655444

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=1.6e-23  Score=136.50  Aligned_cols=157  Identities=27%  Similarity=0.505  Sum_probs=126.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+.+.++|..+||||||.+....+.+.....|+.+  +....+.-.+  +.+.+||.+|+.+++++|..|++.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            457899999999999999999998888888888877  4444554444  899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--------CcEEEeecCCCCC
Q 028813           87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--------IPFMETSAKDSTN  157 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~  157 (203)
                      |+|+.+++.++..+..+..+ ..-.-.++|+++++||.|+++.  +....+   ..++|        +-.|.+|+++..+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~l---i~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIAL---IERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHH---HHHhCccccccceEEEEEEEEcCCcc
Confidence            99999999888777766655 3323358999999999998653  232322   33333        3588999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKDR  172 (203)
Q Consensus       158 i~~~~~~l~~~~~~~  172 (203)
                      ++.+.+||++.....
T Consensus       170 id~~~~Wli~hsk~~  184 (186)
T KOG0075|consen  170 IDITLDWLIEHSKSL  184 (186)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999876544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=4.8e-23  Score=163.98  Aligned_cols=164  Identities=23%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch----------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----------   74 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   74 (203)
                      ...++|+++|.+++|||||+++|++.... ....++++.+.....+..++  ..+.+|||||..+.....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            35689999999999999999999986532 33444555555555666665  478999999975543221          


Q ss_pred             -hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHH----hCCcEE
Q 028813           75 -SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADE----IGIPFM  148 (203)
Q Consensus        75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~  148 (203)
                       ...++.+|++++|+|+.++.+..... ++..+   ...+.|+++|+||+|+.+... ..+.. ..+...    ..++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence             23578899999999999876654432 22222   223689999999999972211 11222 222222    247999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMASQ  176 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  176 (203)
                      ++||++|.|++++|+++.+.+..+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i  350 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANRRI  350 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence            9999999999999999998877665443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=4.8e-23  Score=147.06  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CC---CCCccccceeeeEEEEEEeC------------CeEEEEEEEeCCCccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD----SY---IESYISTIGVDFKIRTVEQD------------GKTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~   69 (203)
                      ++|+++|++++|||||+++|+..    .+   ..+..++.+.+.....+.+.            +....+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    11   11222233333333333332            2357899999999876


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHH------
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFAD------  141 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~------  141 (203)
                      +..........+|++++|+|+.+.........+.  +...  .+.|+++++||+|+.....  ...+...+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5433334456789999999998754333322222  1111  2579999999999864322  11222222111      


Q ss_pred             -HhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          142 -EIGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       142 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                       ..+++++++||++|.|+++++++|.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988774

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=7.4e-23  Score=162.53  Aligned_cols=149  Identities=23%  Similarity=0.269  Sum_probs=113.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      ..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            348999999999999999999998764 234455556666677777776  67899999997654322        2235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      +..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+.....        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            788999999999998877665433332      3368999999999996543221        33457899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKD  171 (203)
Q Consensus       158 i~~~~~~l~~~~~~  171 (203)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=1.4e-22  Score=159.30  Aligned_cols=159  Identities=20%  Similarity=0.225  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc--ccchh------hhcc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTITS------SYYR   79 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~   79 (203)
                      .++|+++|.+|+|||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|..+.  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987655444455555666666666542 26789999997332  11222      2368


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCH
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNV  158 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  158 (203)
                      .+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            899999999999988777776555555555445789999999999864321   1111  1123455 588999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKDR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      ++++++|.+.+...
T Consensus       351 deL~e~I~~~l~~~  364 (426)
T PRK11058        351 PLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999988643

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.9e-22  Score=155.85  Aligned_cols=167  Identities=18%  Similarity=0.198  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhccCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA   81 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~   81 (203)
                      ..|+|+|.||||||||+|+|++........+.++.......+...+ ...+.++|+||...-.       ......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3699999999999999999998765444445555555555565543 2368999999964311       1122347889


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCC
Q 028813           82 HGIIIVYDVT---DQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKD  154 (203)
Q Consensus        82 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  154 (203)
                      |++++|+|++   +.+.++....|++++..+..  .++|+++|+||+|+.....+ .+.++++....+  .+++.+||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999988   45566777777777765432  35899999999998654322 234444544444  4799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCC
Q 028813          155 STNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      +.|+++++++|.+.+.+.....+
T Consensus       318 g~GIdeLl~~I~~~L~~~~~~~~  340 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPREEA  340 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcccCC
Confidence            99999999999999876544333

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=1e-22  Score=140.66  Aligned_cols=146  Identities=19%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhccCCc
Q 028813           12 LLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGAH   82 (203)
Q Consensus        12 ~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   82 (203)
                      +++|.+|+|||||+++|.+.... ....+..+.+........++  ..+.+|||||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999986521 22233333444445555555  6889999999876543        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  161 (203)
                      ++++|+|+.++.+.... .....+..   .+.|+++|+||+|+.+....     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443322 12222322   25899999999998654322     222334565 7899999999999999


Q ss_pred             HHHHHHH
Q 028813          162 FMAMAAS  168 (203)
Q Consensus       162 ~~~l~~~  168 (203)
                      +++|.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=9.1e-23  Score=156.68  Aligned_cols=177  Identities=21%  Similarity=0.193  Sum_probs=129.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY   78 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   78 (203)
                      ..|+++|.||+|||||+|+|++.... .+..|+.+.+.......+.+  ..|.++||+|.+..         ..+....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999987754 45567777788888888877  56899999996532         22344457


Q ss_pred             cCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813           79 RGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDS  155 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (203)
                      ..+|+++||+|....-+  -+.+.+++.      ..++|+++|+||+|-...+    +...+ +..+|+ .++.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~~e----~~~~e-fyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLKAE----ELAYE-FYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCchhh----hhHHH-HHhcCCCCceEeehhhc
Confidence            88999999999877433  223333332      3368999999999975221    22233 334564 7999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          156 TNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      .|+.++.+.++..+. ...+........+.++.+.+.|+.+||+
T Consensus       151 ~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs  193 (444)
T COG1160         151 RGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS  193 (444)
T ss_pred             cCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence            999999999999985 2222222222578999999999999985

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.6e-22  Score=143.80  Aligned_cols=154  Identities=18%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------cceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYIS----------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      +|+|+|.+|+|||||+++|++.........                +.+.......+...  ...+.+||+||..++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            489999999999999999997765443211                12222223333333  368999999999888888


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH---------
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE---------  142 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~---------  142 (203)
                      +..++..+|++++|+|+.++..... ..++..+..   .+.|+++++||+|+......  ....+.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888999999999999987654322 233333332   46899999999998753221  12223333322         


Q ss_pred             -----hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          143 -----IGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       143 -----~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                           ...+++++|+++|.|+++++.+|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 346899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.1e-22  Score=130.24  Aligned_cols=158  Identities=22%  Similarity=0.421  Sum_probs=126.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .++++|+.+|..++||||++.+|..... ....+|.+  +...++.+.+  +.+.+||.+|++..+..|++++....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            4679999999999999999999987663 34455555  5566666655  89999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  159 (203)
                      ||+|..+.+.+++++..+..+ ........|+++.+||-|+++..  ..+++..+...     ..+.+.++++.+|+|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999999998888887766555 33333578999999999997654  44555554432     23678999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      |-|.||++.+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999998764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=1.4e-22  Score=161.39  Aligned_cols=177  Identities=21%  Similarity=0.244  Sum_probs=123.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc--------cccccchhhhccC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITSSYYRG   80 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   80 (203)
                      +|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+.+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23344555555666666666  57999999995        3344445667889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  159 (203)
                      +|++++|+|+.++.+... ..+...+..   .++|+++|+||+|+......    ..+ +..+++ +++++||.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987543222 112222322   26899999999998654321    122 335566 79999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          160 QAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      ++++++.+.+......  ........++.+.+.++.+||.
T Consensus       150 ~ll~~i~~~l~~~~~~--~~~~~~~~~v~ivG~~~~GKSs  187 (429)
T TIGR03594       150 DLLDAILELLPEEEEE--EEEEDGPIKIAIIGRPNVGKST  187 (429)
T ss_pred             HHHHHHHHhcCccccc--ccccCCceEEEEECCCCCCHHH
Confidence            9999999887543221  1223345678888888888864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.7e-22  Score=159.86  Aligned_cols=175  Identities=22%  Similarity=0.240  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhhcc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR   79 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   79 (203)
                      ++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23344455556666677776  7899999999876        2333445678


Q ss_pred             CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           80 GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      .+|++++|+|+.++.+.  ..+..|+...      +.|+++|+||+|+.+..    ....++ ...++ .++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence            99999999999875432  2333343322      68999999999974421    222222 34566 48999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      |++++++++.......   ........+.++.+.+.++.+||.
T Consensus       149 gv~~l~~~I~~~~~~~---~~~~~~~~~~~v~ivG~~n~GKSt  188 (435)
T PRK00093        149 GIGDLLDAILEELPEE---EEEDEEDEPIKIAIIGRPNVGKSS  188 (435)
T ss_pred             CHHHHHHHHHhhCCcc---ccccccccceEEEEECCCCCCHHH
Confidence            9999999998743221   111113456788888999888874

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.1e-22  Score=134.25  Aligned_cols=114  Identities=34%  Similarity=0.610  Sum_probs=87.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ||+|+|.+|||||||+++|.+....  .......+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999987765  22233344455555666777767799999999998888777789999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028813           88 YDVTDQESFNNVKQW---LNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      ||++++.+++.+.++   +..+..... ..|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            999999999887554   555544333 599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=2.2e-22  Score=139.07  Aligned_cols=142  Identities=22%  Similarity=0.272  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhhccCCcEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYYRGAHGII   85 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i   85 (203)
                      +|+++|.+|+|||||+++|.+....  ...+       ..+.+...    .+||+||...    +.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865421  1111       11222221    2699999632    2111223468999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--cEEEeecCCCCCHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--PFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+++..+.  +..|+..+    ..+.|+++++||+|+.+.   ..+...++....++  +++++||++|.|++++|+
T Consensus        70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99999987654  22333332    125789999999998542   34556677777774  899999999999999999


Q ss_pred             HHHHHHHHHh
Q 028813          164 AMAASIKDRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|.+.+.+..
T Consensus       141 ~l~~~~~~~~  150 (158)
T PRK15467        141 YLASLTKQEE  150 (158)
T ss_pred             HHHHhchhhh
Confidence            9988876543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=4.1e-22  Score=161.96  Aligned_cols=154  Identities=18%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||+..|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            46689999999999999999999987776555555555555555555432 27899999999999888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST  156 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  156 (203)
                      +|+|+++....+....    +......+.|+++++||+|+.+.   ..+.+......++         .+++++||++|.
T Consensus       164 LVVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            9999987432222221    22222336899999999998543   2233333332222         479999999999


Q ss_pred             CHHHHHHHHHH
Q 028813          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 ~i~~~~~~l~~  167 (203)
                      |+++++++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.1e-21  Score=137.45  Aligned_cols=155  Identities=24%  Similarity=0.255  Sum_probs=104.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-----------chh
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS   75 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   75 (203)
                      .++|+++|.+|+|||||+++|++.... ....++.+.......+..++  ..+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            479999999999999999999986532 22333333344444555555  4678999999653311           012


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHHh----CCcEEEe
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADEI----GIPFMET  150 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~----~~~~~~~  150 (203)
                      ..+..+|++++|+|++++.+.... .++..+   ...+.|+++++||+|+.+......+.. ..+....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~---~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLI---LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHH---HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            345789999999999987664432 222222   223689999999999876532222222 2222332    3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028813          151 SAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=5.5e-22  Score=161.90  Aligned_cols=157  Identities=21%  Similarity=0.310  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------cceeeeEEEE--EEe---CCeEEEEEEEeCCCccc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIRT--VEQ---DGKTIKLQIWDTAGQER   69 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~   69 (203)
                      .-+|+++|+.++|||||+++|+...       +...+..      ..+.++....  +.+   ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4579999999999999999998642       1111111      1233343332  333   45668999999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---c
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---P  146 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  146 (203)
                      |...+..++..+|++|+|+|++++.+.+....|...+.    .+.|+++|+||+|+.+..  ......++...+++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            98889999999999999999998766666666654442    368999999999985432  12233455555665   4


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Q 028813          147 FMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       147 ~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ++++||++|.|++++|++|.+.+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCC
Confidence            899999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=3.8e-22  Score=143.46  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEEEeC---------------------------C----
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTVEQD---------------------------G----   54 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   54 (203)
                      ++|+++|+.++|||||++++.+...   +.+.....+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999976522   11111221211111111110                           0    


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--C
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--S  132 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~  132 (203)
                      ....+.|||+||+..+...+...+..+|++++|+|+.++.........+..+...  ...|+++|+||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1167899999999988777777788899999999998742111112222223222  12478999999998653221  1


Q ss_pred             HHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          133 YETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       133 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      .+.++++...+   +++++++||++|.|+++++++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            13333433332   57899999999999999999998655

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.89  E-value=1.6e-22  Score=143.86  Aligned_cols=158  Identities=21%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ..++|+++|+.++|||||+++|+......                  +.....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            46899999999999999999998543211                  111223334444444412334789999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH----HHHHHh-
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADEI-  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~~~-  143 (203)
                      .|.......+..+|++|+|+|+.++.... ..+.+..+..   .+.|+++++||+|+...+  ..+..+    .+.+.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~--~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKE--LEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHH--HHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhh--HHHHHHHHHHHhccccc
Confidence            88877888899999999999998764422 2333333332   368899999999987221  111222    232333 


Q ss_pred             -----CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          144 -----GIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       144 -----~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                           .++++++||++|.|++++++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                 257999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=1.2e-21  Score=148.45  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--------cchhhhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYY   78 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~   78 (203)
                      +.-.|+|+|.+|||||||+|+|++...........+.......+... ...++.+|||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            45679999999999999999999877643222222212222222222 22689999999964322        2233356


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCC
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTN  157 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  157 (203)
                      ..+|++++|+|+++...- .....+..+.   ..+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            889999999999873221 1122222232   2368999999999997433333344455555444 6899999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 028813          158 VEQAFMAMAASIKDRMA  174 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~  174 (203)
                      +++++++|.+.+.+...
T Consensus       159 v~~L~~~L~~~l~~~~~  175 (292)
T PRK00089        159 VDELLDVIAKYLPEGPP  175 (292)
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999988765433

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.89  E-value=1.2e-21  Score=159.73  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.|+++|.+++|||||+++|++..   ++.+..++.+.+.....+..++  ..+.+||+||+++|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999743   3344455666666666676666  78999999999999888888889999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC--CHHHHHHHHHHh----CCcEEEeecCCC
Q 028813           86 IVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKAFADEI----GIPFMETSAKDS  155 (203)
Q Consensus        86 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  155 (203)
                      +|+|++++   .+.+.+    ..+..   .+.| +++++||+|+.+....  ..+++.++....    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999873   333332    22322   2567 9999999999754322  123444554443    478999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIKDR  172 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~  172 (203)
                      .|+++++.+|.+.+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=8.2e-22  Score=143.95  Aligned_cols=167  Identities=18%  Similarity=0.147  Sum_probs=115.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY   77 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (203)
                      .+.--|+++|.||+|||||+|++++....-.+...+++......+...+ +.++.|+||||...        +.......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            3566799999999999999999999887654444444333444443332 47999999999432        23334455


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDST  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  156 (203)
                      +..+|+++||+|++++... .-+..++.+..   .+.|+++++||+|..............+..... ..++++||++|.
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            7899999999999874331 11222333333   357999999999987765422333333333333 479999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCC
Q 028813          157 NVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      |++.+.+.+...+.+.-.-.|
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp  179 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYP  179 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCC
Confidence            999999999988876655444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=1.7e-21  Score=162.85  Aligned_cols=182  Identities=19%  Similarity=0.164  Sum_probs=121.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   77 (203)
                      ...+|+++|.+|+|||||+|+|++.... ....++.+.+.......+++  ..+.+|||||...        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4578999999999999999999986542 23344444444444455555  6789999999653        23334456


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDST  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (203)
                      +..+|++++|+|+.+...... ..|...+.   ..++|+++|+||+|+....    .....+. ..+. ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr---~~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLR---RAGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHH---hcCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence            789999999999976422111 23444443   2478999999999985432    1122221 2332 46799999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          157 NVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      |+.+++++|.+.+................++.+.+.++.+||+
T Consensus       423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSS  465 (712)
T PRK09518        423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS  465 (712)
T ss_pred             CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHH
Confidence            9999999999988652221110112345788888999988874

>cd04163 Era Era subfamily

Probab=99.88  E-value=3e-21  Score=134.36  Aligned_cols=156  Identities=17%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhcc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR   79 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   79 (203)
                      ..+|+++|++|+|||||+++|.+.................. .........+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998764322211111111111 11222336889999999654322        2334578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCH
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNV  158 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  158 (203)
                      .+|++++|+|++++... ....+...+...   +.|+++|+||+|+........+....+....+ .+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999986221 112222333222   57999999999987433333333444444443 68999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.1e-21  Score=139.05  Aligned_cols=160  Identities=18%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   74 (203)
                      .+..++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.+||+||..          .+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            457789999999999999999999987533333333333332222222   2578999999942          233333


Q ss_pred             hhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHHHhCCcEEE
Q 028813           75 SSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFME  149 (203)
Q Consensus        75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~  149 (203)
                      ..++..   ++++++++|++++...... .....+.   ..+.|+++++||+|+.......  .+.+.........++++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            344443   4678888998775433221 1111222   2368899999999986543211  12233444444678999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHH
Q 028813          150 TSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      +|++++.|+++++++|.+.+.+
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999877653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=1.3e-21  Score=161.34  Aligned_cols=157  Identities=20%  Similarity=0.216  Sum_probs=112.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceee--eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVD--FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .+...|+|+|.+++|||||+++|...........+.+.+  .+...+...+....+.||||||+..|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            466899999999999999999999876654443333322  233333333445889999999999999989889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH-------HHHhC--CcEEEeecCC
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF-------ADEIG--IPFMETSAKD  154 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~  154 (203)
                      +|+|+|+++....+..+.+ ..+   ...+.|+++++||+|+....   .+.+...       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999875332222221 222   23468999999999986532   2222221       12233  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~  169 (203)
                      |.|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=2.6e-21  Score=160.86  Aligned_cols=154  Identities=19%  Similarity=0.239  Sum_probs=112.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+...|+|+|..++|||||+++|....+......+.+.+.....+.+++  ..+.||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            5778999999999999999999988766554444444444444555555  67999999999999988888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-------HHHHhC--CcEEEeecCCCC
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-------FADEIG--IPFMETSAKDST  156 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~  156 (203)
                      ||+|+++...-+....    +......+.|+++++||+|+.+..   .+.+..       +...++  ++++++||++|.
T Consensus       366 LVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            9999987432222222    222223468999999999986432   121111       122233  689999999999


Q ss_pred             CHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 ~i~~~~~~l~~~  168 (203)
                      |+++++++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999998764

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-22  Score=133.96  Aligned_cols=161  Identities=26%  Similarity=0.402  Sum_probs=124.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC------C-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS------Y-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY   78 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (203)
                      ...+.++|+|..++|||||+.++....      . +....++.+  ....++.+.+  ..+.+||.+|+...+++|..+|
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence            355789999999999999999875321      1 122334444  4455555554  6889999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH------HhCCcEEEee
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD------EIGIPFMETS  151 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~S  151 (203)
                      ..++++|+++|+++++.++.....+..+ ......+.|+++.+||.|+.+..  ..+++...+.      +..+++.++|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence            9999999999999999888776655544 44455689999999999986543  3344444333      2247899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~~  172 (203)
                      |++|+||++.+.|+...+..+
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999999877

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.5e-21  Score=155.57  Aligned_cols=162  Identities=24%  Similarity=0.231  Sum_probs=111.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------h
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T   74 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   74 (203)
                      ..++|+++|.+|+|||||+++|++... .....++++.+.....+..++  ..+.+|||||..+....           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            569999999999999999999997653 334445555555555555555  56789999996432211           1


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH----hCCcEEEe
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE----IGIPFMET  150 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~  150 (203)
                      ...+..+|++|+|+|+.++.+..... +...+.   ..+.|+++++||+|+.+... ..+....+...    ..++++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~---~~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~  324 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLAL---EAGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEE
Confidence            23567899999999999876654432 222232   23689999999999864321 11111222222    24799999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      ||++|.|+.++++.+.+....+...
T Consensus       325 SA~~~~gv~~l~~~i~~~~~~~~~~  349 (435)
T PRK00093        325 SALTGQGVDKLLEAIDEAYENANRR  349 (435)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHcCc
Confidence            9999999999999998877766544

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.88  E-value=5.7e-21  Score=159.47  Aligned_cols=154  Identities=16%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc----------hhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------TSS   76 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   76 (203)
                      +.++|+++|.||+|||||+|+|++........+..+.+.....+..++  .++.+||+||..++...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHH
Confidence            357899999999999999999998766555556555555555554444  78899999998765431          112


Q ss_pred             h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813           77 Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        77 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      +  ...+|++++|+|+++.+...   .+..++.+   .+.|+++++||+|+.+.+... ...+++.+.++++++++|+++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence            2  24789999999998865422   23333433   368999999999986544443 456778888999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASI  169 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~  169 (203)
                      ++|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999988765

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=1e-20  Score=124.21  Aligned_cols=164  Identities=26%  Similarity=0.419  Sum_probs=135.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCccccceeeeEEEEEEeC-CeEEEEEEEeCCCcccc-ccchhhhccCCc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF-RTITSSYYRGAH   82 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d   82 (203)
                      +..|++++|..++|||++++.|+..+..  ....+|.. +++...++.+ +..-.+.++||.|.... ..+-+++++-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            5679999999999999999999865442  34455555 5555555544 33457899999997665 667788899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++++||+..+++||+.+...-..|..+.. +.+|+++++||.|+.++..+..+....|+.+..+.++++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999888776666755543 46899999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          162 FMAMAASIKD  171 (203)
Q Consensus       162 ~~~l~~~~~~  171 (203)
                      |.+|...+..
T Consensus       167 f~~l~~rl~~  176 (198)
T KOG3883|consen  167 FTYLASRLHQ  176 (198)
T ss_pred             HHHHHHhccC
Confidence            9999887763

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.88  E-value=2.3e-21  Score=158.25  Aligned_cols=146  Identities=20%  Similarity=0.250  Sum_probs=110.9

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhc--cCCcEEEE
Q 028813           15 GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGIII   86 (203)
Q Consensus        15 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~   86 (203)
                      |.+|+|||||+|+|.+........++.+.+.....+.+++  ..+.+||+||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876556667777777767777766  56899999998776543      23333  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |+|+++.+..   ..+..++.   ..+.|+++++||+|+.+..... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875432   22222232   2368999999999986544443 346777888899999999999999999999998


Q ss_pred             HHH
Q 028813          167 ASI  169 (203)
Q Consensus       167 ~~~  169 (203)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=2.4e-21  Score=136.83  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=96.1

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   73 (203)
                      +....++|+++|.+|+|||||+++|.+........++.+.+.....+..++   .+.+||+||..          .+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346788999999999999999999998753333223333333333333333   68999999943          22222


Q ss_pred             hhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhC--Cc
Q 028813           74 TSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIG--IP  146 (203)
Q Consensus        74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  146 (203)
                      ...++.   .+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.....  ...+.++......+  ++
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            333443   45799999999875443333 22333322   3689999999999864322  12334444555443  58


Q ss_pred             EEEeecCCCCCHH
Q 028813          147 FMETSAKDSTNVE  159 (203)
Q Consensus       147 ~~~~Sa~~~~~i~  159 (203)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=7.4e-21  Score=159.04  Aligned_cols=164  Identities=22%  Similarity=0.224  Sum_probs=114.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccc-h
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI-T   74 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   74 (203)
                      ..++|+++|.+|||||||+++|++.... ....++++.+.....+.+++  ..+.+|||||..+          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 23445555566666666776  4567999999532          1111 1


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-HHHHh----CCcEEE
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-FADEI----GIPFME  149 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~  149 (203)
                      ...++.+|++++|+|++++.+..... ++..+.   ..++|+++|+||+|+.+...  .+..+. +....    .++++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~---~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAV---DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            23468899999999999887766553 233332   23689999999999965321  122222 11111    357899


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHhccCCC
Q 028813          150 TSAKDSTNVEQAFMAMAASIKDRMASQPS  178 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~  178 (203)
                      +||++|.|++++++.+.+.+.++....+.
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T  629 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPT  629 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence            99999999999999999988876554443

>cd00880 Era_like Era (E

Probab=99.86  E-value=1e-20  Score=130.61  Aligned_cols=151  Identities=21%  Similarity=0.161  Sum_probs=103.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-------chhhhccCCcEE
Q 028813           13 LIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------ITSSYYRGAHGI   84 (203)
Q Consensus        13 v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~   84 (203)
                      ++|++|||||||++++.+.... .....+.+............ ...+.+||+||......       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986544 33333333333434443331 36889999999765533       334477899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH---HHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET---AKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++++|+.+........ +....   ...+.|+++|+||+|+..........   ........+++++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877654443 22222   23468999999999987644322211   12222334579999999999999999


Q ss_pred             HHHHHHH
Q 028813          162 FMAMAAS  168 (203)
Q Consensus       162 ~~~l~~~  168 (203)
                      +++|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=1.8e-20  Score=134.64  Aligned_cols=118  Identities=23%  Similarity=0.395  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC-cEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIIVY   88 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~   88 (203)
                      +|+++|+++||||||+++|....+.....++ ............+....+.+||+||+.++...+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765544332 2122221221123446899999999999988888889998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHh---hcCCCCcEEEEEeCCCCCCC
Q 028813           89 DVTDQ-ESFNNVKQWLNEIDR---YASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        89 d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~ilv~nK~D~~~~  128 (203)
                      |+.+. .++..+..|+..+..   ....+.|+++++||+|+...
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            99987 566666665544421   22357999999999998643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=142.54  Aligned_cols=165  Identities=25%  Similarity=0.221  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-----------h
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T   74 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   74 (203)
                      ..++|+|+|.||+|||||+|+|++... -.+..++++.+.-...+.+++  ..+.++||+|..+-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            469999999999999999999998764 345667777777778888877  67788899995433222           1


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-Hh----CCcEEE
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EI----GIPFME  149 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~  149 (203)
                      ...+..+|++++|+|+..+.+-+.    ...+......+.++++++||+|+.+.+....+..+.... ..    .++++.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQD----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHH----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            223578999999999998876332    222333334478999999999997764333343333222 22    368999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813          150 TSAKDSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      +||+++.|+..+|+.+......+....+
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~  358 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRIS  358 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccccC
Confidence            9999999999999999888877766544

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=1.8e-20  Score=153.20  Aligned_cols=159  Identities=23%  Similarity=0.283  Sum_probs=113.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Cc------cccceeeeEE--EEEEe---CCeEEEEEEEeCCCcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIE-----SY------ISTIGVDFKI--RTVEQ---DGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~   68 (203)
                      +.-+++++|+.++|||||+.+|+...  ...     ..      +...+.++..  ..+.+   ++..+.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            45689999999999999999998532  110     00      1112222322  22222   4556899999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc--
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP--  146 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  146 (203)
                      +|...+...+..+|++|+|+|++++...+....|....    ..+.|+++|+||+|+.+...  .....++....++.  
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence            99888889999999999999999876555555554332    23689999999999854321  22234444445654  


Q ss_pred             -EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          147 -FMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       147 -~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                       ++++||++|.|+++++++|.+.+..
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence             8999999999999999999987753

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=4.7e-23  Score=139.48  Aligned_cols=196  Identities=33%  Similarity=0.561  Sum_probs=161.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCccccccchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ++..++++|+|.-++|||+++.+++...+...+..+.+.++..+...++.+ .+++.+||..|++++..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            467899999999999999999999999888888889998888888877765 4678899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCC-HHHHHHHHHHhCC-cEEEeecCCCCC
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVS-YETAKAFADEIGI-PFMETSAKDSTN  157 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~  157 (203)
                      .++|||++...+++....|.+.+.....    ...|+++..||+|........ ...+.++..++|+ .-+++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            9999999999999999999998844322    346789999999986543322 4667888888886 789999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCCC
Q 028813          158 VEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGC  200 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  200 (203)
                      +.|+-..|++.+..+-.+.+.....+-.++..+..+..+..||
T Consensus       182 i~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s~~~g~  224 (229)
T KOG4423|consen  182 IPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPSEAAGR  224 (229)
T ss_pred             hhHHHHHHHHHHHhhccCCcccccccccccCccccCcchhhhh
Confidence            9999999999999887776666666666666665555544444

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=1.3e-20  Score=122.25  Aligned_cols=154  Identities=28%  Similarity=0.420  Sum_probs=120.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+++||+++|..++|||||++.|.+.. ++...++.+  +..+.+...+ .+++.+||.+|+...+..|..||.++|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence            4789999999999999999999998765 345556666  5555665553 47899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------CCcEEEeecCCC
Q 028813           85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--------GIPFMETSAKDS  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~  155 (203)
                      |||+|.+|.-.++++.+.+-++ ...+....|+++..||.|+......     ++.+...        -+.+-+||+..+
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-----eeia~klnl~~lrdRswhIq~csals~  164 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-----EEIALKLNLAGLRDRSWHIQECSALSL  164 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-----HHHHHhcchhhhhhceEEeeeCccccc
Confidence            9999999988888886655554 4444457999999999998544322     1222222        246889999999


Q ss_pred             CCHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAA  167 (203)
Q Consensus       156 ~~i~~~~~~l~~  167 (203)
                      +|+..-.+|+..
T Consensus       165 eg~~dg~~wv~s  176 (185)
T KOG0074|consen  165 EGSTDGSDWVQS  176 (185)
T ss_pred             cCccCcchhhhc
Confidence            999999888754

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.3e-20  Score=128.13  Aligned_cols=163  Identities=30%  Similarity=0.572  Sum_probs=142.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++++++|..|.||||++++++.+.+...+.++.+.+.....+..+...+++..|||+|++.+......++-++.+.|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            47999999999999999999999999999999999988888877776667999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      +||+..+.++..+..|...+.+.... +|+++++||.|.....  .......+-...++.+++.|++.+.|...-|-|+.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            99999999999999999988776664 9999999999985443  12223445556789999999999999999999999


Q ss_pred             HHHHHH
Q 028813          167 ASIKDR  172 (203)
Q Consensus       167 ~~~~~~  172 (203)
                      +.+...
T Consensus       166 rKl~G~  171 (216)
T KOG0096|consen  166 RKLTGD  171 (216)
T ss_pred             hhhcCC
Confidence            988744

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=6.4e-20  Score=149.01  Aligned_cols=160  Identities=14%  Similarity=0.143  Sum_probs=104.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------------CeEEEEEEEeCCCcccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~   70 (203)
                      +..-|+++|++++|||||+++|.+..+......+.+.+.....+..+                .....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            34569999999999999999999876643322222211111111110                01123889999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC------------CHHH
Q 028813           71 RTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------------SYET  135 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~------------~~~~  135 (203)
                      ..++..++..+|++++|+|+++.   .+++.+.    .+.   ..+.|+++++||+|+......            ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            98888899999999999999873   3433322    222   236899999999998632100            0000


Q ss_pred             ------------HHHHHH------------Hh--CCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          136 ------------AKAFAD------------EI--GIPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       136 ------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                                  ..++..            .+  .++++++||++|+|+++++++|......+.
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence                        001110            11  268999999999999999999876655433

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=3.2e-19  Score=130.61  Aligned_cols=151  Identities=23%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   82 (203)
                      +++++|.+|+|||||+++|.+........+.++.+.....+.+++  ..+.+||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333334444455556666666  688999999964322       12345688999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 028813           83 GIIIVYDVTDQE-SFNNVKQWLNEI-----------------------------------------DRY-----------  109 (203)
Q Consensus        83 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~-----------  109 (203)
                      ++++|+|++++. ....+...+...                                         ..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333333322211                                         000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          110 -----------A--SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       110 -----------~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                                 .  ....|+++|+||+|+...     ++...++.  ..+++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  113689999999998532     33444443  34689999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1e-19  Score=140.39  Aligned_cols=154  Identities=20%  Similarity=0.214  Sum_probs=116.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      .-++++++|.||+|||||+|+|++.... ....++++.+.-...+.++|  +.+.+.||+|..+....        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4489999999999999999999987753 45678888899999999999  88899999996654333        2234


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      ++.+|.++||+|++.+.+-...    ..+. ....++|+++|.||.|+........     +....+.+++.+|++++.|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~----~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL----ALIE-LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH----HHHH-hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence            6889999999999986321111    1111 4455789999999999976543211     1112345799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKDR  172 (203)
Q Consensus       158 i~~~~~~l~~~~~~~  172 (203)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999888766

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=3.2e-20  Score=123.42  Aligned_cols=135  Identities=24%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhccCCcEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGII   85 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   85 (203)
                      ||+++|+.+||||||+++|.+...  .+..|+...+.       +     .++||||.-    .+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999999665  33344332222       1     246999832    33333444567899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++.|++++.+.-.     ..+....  ++|+|-|+||+|+... ....+..+++....|+ .+|.+|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998754110     0111111  5799999999999732 2355667778788887 5799999999999999999


Q ss_pred             HH
Q 028813          165 MA  166 (203)
Q Consensus       165 l~  166 (203)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            85

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=7.3e-20  Score=145.31  Aligned_cols=154  Identities=20%  Similarity=0.213  Sum_probs=101.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|++++|||||+++|++..-                               ..+..+..+.+.....+..+ 
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~-   82 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD-   82 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence            3679999999999999999999984221                               11123444444444444444 


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc---
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV---  130 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~---  130 (203)
                       .+.+.+|||||+..|.......+..+|++++|+|+++...+ .....++..+....  ..|+++++||+|+.+...   
T Consensus        83 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 -KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             -CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHH
Confidence             47899999999988765555557889999999999873111 11122222232221  246899999999865221   


Q ss_pred             -CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813          131 -VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       131 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  163 (203)
                       ...+++..+....+     ++++++||++|.|+.+..+
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence             11234444554444     5799999999999998653

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1e-19  Score=144.40  Aligned_cols=154  Identities=18%  Similarity=0.155  Sum_probs=103.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYI-----------------------------ESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+..  ...                             .+...+.+.+.....+..+ 
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-   83 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-   83 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence            56799999999999999999999852  111                             1122244444444444444 


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-  131 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-  131 (203)
                       .+.+.+||+||+++|.......+..+|++++|+|++++++..  ....++..... .. ..|+++++||+|+.+.... 
T Consensus        84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~-~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LG-INQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cC-CCeEEEEEEChhccCccHHH
Confidence             478999999999888666666678999999999999874321  11111222222 21 3578999999999642221 


Q ss_pred             ---CHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813          132 ---SYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  163 (203)
                         ..+++..++...+     ++++++||++|.|+.+++.
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence               1234455555554     5799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.83  E-value=1.3e-19  Score=142.65  Aligned_cols=167  Identities=20%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCccccceeeeEEEEEEe------------------C--C---
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRTVEQ------------------D--G---   54 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~---   54 (203)
                      |=+.....++|+++|+.++|||||+.+|.+....   .+.....+.........+                  +  +   
T Consensus         2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (411)
T PRK04000          2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET   81 (411)
T ss_pred             CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence            3445677899999999999999999999763221   111222222221111000                  0  0   


Q ss_pred             -eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813           55 -KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-  131 (203)
Q Consensus        55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-  131 (203)
                       ....+.+||+||+.+|..........+|++++|+|+.++. ..+. ...+..+....  ..|+++|+||+|+.+.... 
T Consensus        82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDIIG--IKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHcC--CCcEEEEEEeeccccchhHH
Confidence             1257899999999888665555566789999999999643 1111 12222232221  2468999999998654321 


Q ss_pred             -CHHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          132 -SYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       132 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                       ..+.+..+...+   +++++++||++|.|+++++++|.+.+.
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence             123344444332   478999999999999999999987663

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=1.1e-19  Score=143.08  Aligned_cols=163  Identities=18%  Similarity=0.206  Sum_probs=105.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEE--------------EEe----CC------eEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRT--------------VEQ----DG------KTIK   58 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~   58 (203)
                      ...++|+++|.+++|||||+++|.+.....   +.....+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            356899999999999999999997642211   11111111111000              000    11      1367


Q ss_pred             EEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHH
Q 028813           59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETA  136 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~  136 (203)
                      +.+||+||+++|...+...+..+|++++|+|++++.......+.+..+....  ..|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999998777777888999999999986431112222333332221  2468999999998654321  12334


Q ss_pred             HHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          137 KAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       137 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ..+....   +++++++||++|.|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444332   578999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=1.4e-19  Score=130.56  Aligned_cols=147  Identities=24%  Similarity=0.208  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------ccccceeeeEEEEEEeCCeEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIES-------------------------------YISTIGVDFKIRTVEQDGKTIK   58 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (203)
                      +|+++|.+++|||||+++|+...-...                               .....+.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            589999999999999999975321100                               112333333344444444  68


Q ss_pred             EEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC----CHH
Q 028813           59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SYE  134 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~----~~~  134 (203)
                      +.+|||||+.++.......+..+|++++|+|++++..-.. ......+....  ..++++|+||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8999999998876656667889999999999987532111 12222222221  2357888999998643221    112


Q ss_pred             HHHHHHHHhC---CcEEEeecCCCCCHHHH
Q 028813          135 TAKAFADEIG---IPFMETSAKDSTNVEQA  161 (203)
Q Consensus       135 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~~  161 (203)
                      ++.++...++   .+++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3444455555   35899999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.82  E-value=3.4e-19  Score=142.96  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=121.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--   78 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   78 (203)
                      +..+++++|+||+|||||+|+|++.+..-..+++.+.+.....+...+  .++++.|.||..+...      ..++++  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            346799999999999999999999988888889988888888888877  5688999999544322      233333  


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      ...|++|-|+|+++.+.-..+--.+.+      -+.|+++++|++|..+...+.. +.+++.+..|+|+++++|++|.|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence            457999999999987643332222222      2789999999999866554433 366778889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKDR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      ++++..+.+....+
T Consensus       153 ~~l~~~i~~~~~~~  166 (653)
T COG0370         153 EELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999988755443

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=4.3e-19  Score=123.72  Aligned_cols=150  Identities=19%  Similarity=0.283  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccchhhhcc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSSYYR   79 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   79 (203)
                      .|+++|.+|+|||||++.+.+........++.+.+.....+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996544444444444344444444443   889999999533          2222333333


Q ss_pred             ---CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHH--HhCCcEEEe
Q 028813           80 ---GAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFAD--EIGIPFMET  150 (203)
Q Consensus        80 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  150 (203)
                         ..+++++++|......  ...+..|+...      +.|+++++||+|+.......  .........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4578899999876532  22333343322      57999999999985433211  111222222  234689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028813          151 SAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.|+.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=117.86  Aligned_cols=158  Identities=20%  Similarity=0.299  Sum_probs=116.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----c--ccc---ceeeeEEEEEEeCCeEEEEEEEeCCCccccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-----Y--IST---IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-----~--~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   74 (203)
                      .....||+|.|+.++||||+++++........     .  ...   ++...........+ +..+++++|||+.+|.-+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence            35778999999999999999999987553111     1  111   12222222222222 2578999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeec
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSA  152 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa  152 (203)
                      ..+.+.++++|+++|.+.+..+ +.+..+..+.....  .|+++.+||.|+.+..  ..+.+++.....  ..+++..++
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeec
Confidence            9999999999999999988877 44444544433322  8999999999996543  455666655544  789999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAAS  168 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~  168 (203)
                      .++++..+.++.+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999998887765

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=9.4e-19  Score=142.70  Aligned_cols=160  Identities=14%  Similarity=0.189  Sum_probs=110.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYIES------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      ..-+|+++|+.++|||||+++|+.  +.+...            .....+.++......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            356899999999999999999996  222221            122334455555555555558999999999999998


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-CCHHHHHHHHHH-------hC
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKAFADE-------IG  144 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  144 (203)
                      .+..+++.+|++|+|+|+.+...... +.++..+.   ..+.|.++++||+|+...+. ...+++..+...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~---~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAF---AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHH---HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            89999999999999999987533222 22222222   23689999999999864332 112233333221       34


Q ss_pred             CcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 028813          145 IPFMETSAKDST----------NVEQAFMAMAASIK  170 (203)
Q Consensus       145 ~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  170 (203)
                      +|++.+||++|.          |+..+++.|++.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            789999999998          57788877776664

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=6.1e-19  Score=125.58  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=96.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      .++|+++|..++|||||+++|++...                +.+.....+  .......+.....++.++||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCcc--EEeeeeEecCCCeEEEEEECcCHHHHH
Confidence            48999999999999999999985310                111122333  333333344444788999999998887


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHh----
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEI----  143 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~----  143 (203)
                      ......+..+|++++|+|+...-.- .....+..+..   .+.| +++++||+|+......   ...++..+....    
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            7777778899999999999865322 12223333332   2566 7789999998643221   112344444443    


Q ss_pred             -CCcEEEeecCCCCCHH
Q 028813          144 -GIPFMETSAKDSTNVE  159 (203)
Q Consensus       144 -~~~~~~~Sa~~~~~i~  159 (203)
                       +++++++||++|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence             3689999999998864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.4e-20  Score=120.57  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=116.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++..+|+++|..|+||||+.-++.-++.... .|+.+  +....+.+  +++++.+||..|+.+.+..|+.++.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence            4789999999999999998887775554322 23333  34444444  4489999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH----HHHhCCcEEEeecCCCCCHHH
Q 028813           86 IVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      ||+|.+|.+.+..... ++..+....-.+..+++++||.|..... ...+....+    .+..-+.+++.||.+|.|+++
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999987766544 4444432222346788999999975432 111211111    111126899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          161 AFMAMAASIKDR  172 (203)
Q Consensus       161 ~~~~l~~~~~~~  172 (203)
                      +.+||.+.+.++
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988643

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.82  E-value=5.7e-19  Score=144.67  Aligned_cols=156  Identities=16%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -|+++|+.++|||||+++|.+..   ++.+...+.+++.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48899999999999999999743   3333334445444433443322 2458999999999987777777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC--CHHHHHHHHHHhC---CcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKAFADEIG---IPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  160 (203)
                      |+|++++..- ...+.+..+...   +.| +++|+||+|+.+....  ..+++.++....+   ++++++|+++|.|+++
T Consensus        81 VVda~eg~~~-qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMA-QTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            9999874221 112222223222   355 5799999998653221  1233444444443   6899999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          161 AFMAMAASIK  170 (203)
Q Consensus       161 ~~~~l~~~~~  170 (203)
                      ++++|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999986544

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=7e-19  Score=128.96  Aligned_cols=112  Identities=15%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC------------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|++|+|||||+++|+...-..                  +.....+.......+.+++  .++.+|||||+.++.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            58999999999999999998532100                  0111122223334444444  789999999999988


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ..+...++.+|++++|+|+.+.... ....++..+..   .+.|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            8888899999999999999876442 23344444433   3689999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=3.8e-19  Score=145.05  Aligned_cols=155  Identities=16%  Similarity=0.240  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCCC--------------CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD--SYIE--------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      +|+|+|+.++|||||+++|+..  .+..              +.....++......+.+.+  +.+.+|||||+.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            7999999999999999999852  2211              1112223333333444544  89999999999999888


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHH-------HhCC
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFAD-------EIGI  145 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~  145 (203)
                      +...+..+|++++|+|+.+.. ......|+..+..   .+.|+++++||+|+.+.+.. ..+++..++.       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            888999999999999998643 2333455554433   36899999999998653311 1223333332       2357


Q ss_pred             cEEEeecCCCC----------CHHHHHHHHHHHHH
Q 028813          146 PFMETSAKDST----------NVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~  170 (203)
                      +++.+||++|.          |+..+|+.|.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999995          79999988888765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=5.9e-19  Score=128.88  Aligned_cols=169  Identities=18%  Similarity=0.183  Sum_probs=111.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc------------cc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------RT   72 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~   72 (203)
                      .-+.++|+|+|.||+|||||.|.+.+...........+++....-+... ...++.|+||||.-..            ..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4588999999999999999999999998877666655544444444333 3479999999993211            11


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-------------C---HHHH
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-------------S---YETA  136 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-------------~---~~~~  136 (203)
                      .....+..+|++++|+|+++...... ...+..+..+.  ..|-++|+||.|......+             .   .+..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            12234678999999999996432111 12233333332  5788999999997544211             1   1111


Q ss_pred             HHHHHHh---------CC----cEEEeecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813          137 KAFADEI---------GI----PFMETSAKDSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       137 ~~~~~~~---------~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      ++|...-         ++    .+|.+||+.|.|++++.+||..++...-+..+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~  278 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP  278 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence            1111110         12    38999999999999999999988876655554

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=2.1e-18  Score=140.65  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=102.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeee--EEEEEEe----CCeE-----E-----EEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF--KIRTVEQ----DGKT-----I-----KLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-----~-----~~~i~D~~g~~~   69 (203)
                      .+...|+++|++++|||||+++|.+...........+.+.  +......    .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4567899999999999999999987654333222211111  1111110    0111     1     268999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC----C----------
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----S----------  132 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~----~----------  132 (203)
                      |..++...+..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+......    .          
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            98888888899999999999987   44443332    2222   36899999999998521100    0          


Q ss_pred             --HH-------HHHHHHHHh---------------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          133 --YE-------TAKAFADEI---------------GIPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       133 --~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                        .+       .+.......               .++++++||++|.|++++++.+...+.+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence              00       000111111               2579999999999999999998765543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.81  E-value=2.8e-19  Score=129.99  Aligned_cols=146  Identities=18%  Similarity=0.202  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCCeEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDGKTIK   58 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   58 (203)
                      +|+++|++++|||||+.+|+...-                               ..+.....+.+.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            589999999999999999963210                               011122333344444455544  78


Q ss_pred             EEEEeCCCccccccchhhhccCCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--cc
Q 028813           59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES------FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KV  130 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~  130 (203)
                      +.+||+||+..+...+...+..+|++|+|+|++++..      .......+......  ...|+++++||+|+...  ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence            9999999988776666667788999999999987421      11112222222222  13688999999998632  11


Q ss_pred             CCH----HHHHHHHHHhC-----CcEEEeecCCCCCHH
Q 028813          131 VSY----ETAKAFADEIG-----IPFMETSAKDSTNVE  159 (203)
Q Consensus       131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  159 (203)
                      ...    +.+..+....+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            111    12222333433     579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=127.58  Aligned_cols=157  Identities=19%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRG   80 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (203)
                      .-.+.+||.||+|||||++++..........+.++......++.+++- .++++-|+||.-+-       .-..-..++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            345889999999999999999987766566666666666666666553 24889999994321       1112334678


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCC
Q 028813           81 AHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKD  154 (203)
Q Consensus        81 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  154 (203)
                      ++.++||+|++.+   ..++.++.+..+++.+..  ...|.++|+||+|+.+.+   ...+.+++....-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence            8999999999988   778888777777755543  468999999999986332   22346677666644 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAAS  168 (203)
Q Consensus       155 ~~~i~~~~~~l~~~  168 (203)
                      ++|+.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999887653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=2.4e-18  Score=119.54  Aligned_cols=158  Identities=18%  Similarity=0.273  Sum_probs=107.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   73 (203)
                      |.+...-|+++|.+|+|||||||+|+++........+.|.+.....+.+++   .+.+.|.||-.          .+...
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence            345778899999999999999999999774333344455556666676766   47889999932          23333


Q ss_pred             hhhhcc---CCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC----
Q 028813           74 TSSYYR---GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG----  144 (203)
Q Consensus        74 ~~~~~~---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~----  144 (203)
                      ...|++   +..++++++|+..+...  .++.+|+...      +.|+++++||+|.....+.. ......+....    
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~  169 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence            444443   35688999998765432  2333344333      79999999999987654322 22233333332    


Q ss_pred             Cc--EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          145 IP--FMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       145 ~~--~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ..  ++..|+..+.|++++...|.+.+..
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22  8889999999999999999887754

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=6.2e-18  Score=128.48  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=122.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   76 (203)
                      .....|.++|-+|+|||||+|+|++........-+.+.+.....+.+.+ ...+.+-||.|.-+         |.+ .-.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLE  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLE  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHH
Confidence            4678899999999999999999998776655555666677777777764 35788899999432         222 112


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      -...+|++++|+|++++...+.+......+....-...|+++|+||+|+..+..    .......... ..+.+||++|.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~  342 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGE  342 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCc
Confidence            246899999999999998877777777777777666799999999999865443    1111111112 58999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 028813          157 NVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~  174 (203)
                      |++.+++.|.+.+.....
T Consensus       343 gl~~L~~~i~~~l~~~~~  360 (411)
T COG2262         343 GLDLLRERIIELLSGLRT  360 (411)
T ss_pred             CHHHHHHHHHHHhhhccc
Confidence            999999999998885543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=3.4e-18  Score=134.24  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=102.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|+.++|||||+++|++...                ..+.....+  .......+......+.++|+||+.
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGIT--INTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCcc--EEEEeeEecCCCcEEEEEECCCHH
Confidence            35679999999999999999999986311                111122333  333444444445688999999998


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCC---HHHHHHHHHHhC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~  144 (203)
                      +|.......+..+|++++|+|+.+...... .+.+..+...   ++| +++++||+|+.+.....   .+++..+....+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            886666666788999999999986432222 2223333322   577 67889999986433211   123444444444


Q ss_pred             -----CcEEEeecCCCC--------CHHHHHHHHHHHH
Q 028813          145 -----IPFMETSAKDST--------NVEQAFMAMAASI  169 (203)
Q Consensus       145 -----~~~~~~Sa~~~~--------~i~~~~~~l~~~~  169 (203)
                           ++++++||++|.        ++.++++.|.+.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence                 589999999983        4555555555443

>PRK12735 elongation factor Tu; Reviewed

Probab=99.78  E-value=7.4e-18  Score=132.44  Aligned_cols=158  Identities=15%  Similarity=0.141  Sum_probs=101.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|.+++|||||+++|++...                ..+.....+  .......+.....++.|+||||+.
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT--~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGIT--INTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCce--EEEeeeEEcCCCcEEEEEECCCHH
Confidence            45789999999999999999999986210                111122333  333333344444688999999998


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccC---CHHHHHHHHHHhC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~~  144 (203)
                      +|.......+..+|++++|+|+.+..... ..+.+..+.   ..++|.+ +++||+|+.+....   ...++..+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            88666667778899999999998743221 223333332   2257755 57999998643221   1123444554443


Q ss_pred             -----CcEEEeecCCCC----------CHHHHHHHHHHH
Q 028813          145 -----IPFMETSAKDST----------NVEQAFMAMAAS  168 (203)
Q Consensus       145 -----~~~~~~Sa~~~~----------~i~~~~~~l~~~  168 (203)
                           ++++++|++++.          ++.++++.|.+.
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence                 679999999985          455566555544

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=8.6e-18  Score=132.11  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS----------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      .+..++|+++|+.++|||||+++|++..                ...+.....+.+  ...+.++.....+.+||+||+.
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            4678999999999999999999997420                011122333333  3444444455788999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccCC---HHHHHHHHHHhC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~~---~~~~~~~~~~~~  144 (203)
                      +|..........+|++++|+|+.++...+. .+.+..+...   +.|.+ +++||+|+.+.....   .++++.+...++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            886666556678899999999987432221 2223333222   56755 689999986533211   224555555554


Q ss_pred             -----CcEEEeecCCCC-CHHHH
Q 028813          145 -----IPFMETSAKDST-NVEQA  161 (203)
Q Consensus       145 -----~~~~~~Sa~~~~-~i~~~  161 (203)
                           ++++++|++++. |..++
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~  185 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEW  185 (394)
T ss_pred             CCccCccEEECccccccccCCch
Confidence                 789999999874 44333

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.77  E-value=2.4e-17  Score=118.03  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccee---eeEEEEEEeCCeEEEEEEEeCCCccccccchhh-----hccC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV---DFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS-----YYRG   80 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~   80 (203)
                      ++|+++|.+|+|||||+|+|++...+.......+.   +.....+... ....+.+||+||..........     .+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            78999999999999999999986543322221110   1111111111 1236899999996533222222     2567


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----------CCHHHHHHH----HHHhC
Q 028813           81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKV-----------VSYETAKAF----ADEIG  144 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----------~~~~~~~~~----~~~~~  144 (203)
                      +|+++++.+..    +... ..++..+...   +.|+++|+||+|+.....           ...+.+++.    ....+
T Consensus        81 ~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            89888885422    2222 2344555443   579999999999843211           011111111    11222


Q ss_pred             ---CcEEEeecC--CCCCHHHHHHHHHHHHHHHhc
Q 028813          145 ---IPFMETSAK--DSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       145 ---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~  174 (203)
                         -++|.+|+.  .+.|+.++.+.|+..+.+.+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence               368999998  579999999999999987644

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2.3e-17  Score=122.00  Aligned_cols=159  Identities=19%  Similarity=0.191  Sum_probs=116.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-----ccccch----hh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTIT----SS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~----~~   76 (203)
                      .....|+|.|.||+|||||++++++......+.|.++-.++..++..++  .+++++||||.-     +.+.+.    ..
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            4677899999999999999999999888777778888888888888877  788899999932     122211    11


Q ss_pred             hccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecC
Q 028813           77 YYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAK  153 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (203)
                      .-+-.++++|++|.+...  +.+.-..++.++.....  .|+++|+||+|..+...+  +++.......+ .....+++.
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            224467899999998643  55665667777877664  799999999998755433  33333333334 346778899


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~  170 (203)
                      .+.+++.+...+.....
T Consensus       320 ~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         320 KGCGLDKLREEVRKTAL  336 (346)
T ss_pred             ehhhHHHHHHHHHHHhh
Confidence            99999988888777644

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.77  E-value=1.8e-17  Score=120.52  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccc--------------c---------ceeeeE---------------EEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYIS--------------T---------IGVDFK---------------IRTVE   51 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--------------~---------~~~~~~---------------~~~~~   51 (203)
                      ||+++|+.++|||||+++|....+......              .         .+.+..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999986544221100              0         000000               01111


Q ss_pred             eCCeEEEEEEEeCCCccccccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           52 QDGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      .  ....+.++|+||+.++.......+.  .+|++++|+|+..+..-. ...++..+..   .++|+++|+||+|+.+..
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence            1  2357899999999888655444443  689999999987654311 1223333322   368999999999985432


Q ss_pred             cCC--HHHHHHHHH--------------------------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          130 VVS--YETAKAFAD--------------------------EIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       130 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ...  .+.+.++..                          ...+|+|.+|+.+|.|+++++..|..
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            211  111222211                          01248999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=7.5e-18  Score=122.14  Aligned_cols=113  Identities=22%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------cccceeeeE--EEEEEe---CCeEEEEEEEeCCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESY-----------------ISTIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      +|+++|+.++|||||+++|+........                 ....+.+..  ...+.+   ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999864322110                 011112222  222222   345688999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      ..+.......+..+|++++|+|+.+..+... ..++..+.   ..+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence            9888778888999999999999987655432 33333332   2358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.8e-17  Score=123.07  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   82 (203)
                      -|.+||.||+|||||++++...+......+.++.......+... ....|.+-|+||.-+-       ....-..++...
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            47899999999999999999877665556666666666666653 2346889999993211       111233456788


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEE-eecCCCC
Q 028813           83 GIIIVYDVTDQE---SFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TSAKDST  156 (203)
Q Consensus        83 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~  156 (203)
                      ++++|+|++..+   ..+.......++..+..  ..+|.++|+||+|+....+......+.+....++..+. +|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999998543   34555555555544422  36899999999997665544444445555555543222 9999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 028813          157 NVEQAFMAMAASIKDRM  173 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~  173 (203)
                      |++++...+.+.+.+..
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998775

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.76  E-value=1.6e-17  Score=123.93  Aligned_cols=112  Identities=20%  Similarity=0.171  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|++++|||||+++|+...-                  +.+.....+.+.....+.+.+  .++.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999973110                  112233344444455566655  789999999998888


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ..+...++.+|++|+|+|+.+...-.. ...+..+.   ..++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~---~~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD---RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCC
Confidence            888889999999999999987543222 22222232   33689999999999853

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=1.5e-17  Score=131.22  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=96.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|+++|++++|||||+++|++...                ..+...+.+  .......+.....++.++|+||+..
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T--~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGIT--INTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEe--EEccEEEEccCCeEEEEEECCChHH
Confidence            5679999999999999999999986311                111123333  3333333433446888999999988


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC-
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG-  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~-  144 (203)
                      |.......+..+|++++|+|+.....- ...+.+..+..   .++| +++++||+|+.+....   ...++..+....+ 
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            866667778899999999999865321 22222333322   2577 7788999999653321   1123444444433 


Q ss_pred             ----CcEEEeecCCCCCH
Q 028813          145 ----IPFMETSAKDSTNV  158 (203)
Q Consensus       145 ----~~~~~~Sa~~~~~i  158 (203)
                          ++++++|+++|.++
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence                68999999999754

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6.6e-18  Score=112.60  Aligned_cols=155  Identities=21%  Similarity=0.291  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.=|++++|..|+|||||++.|...... .+.||..  .++..+.+.+  .+++.+|.+|+..-+..|+.++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            4568999999999999999999876653 3333333  3344555666  788999999999989999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------------C---CcEE
Q 028813           87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--------------G---IPFM  148 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------------~---~~~~  148 (203)
                      .+|+.|.+.+.+.+..+..+ ....-...|+++.+||+|.....  +.++.+......              +   +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            99999999988887766654 33333479999999999986543  444443322111              1   2478


Q ss_pred             EeecCCCCCHHHHHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      .||...+.|..+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            99999999999999888654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.75  E-value=1.6e-17  Score=120.27  Aligned_cols=113  Identities=18%  Similarity=0.219  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CC--------------CccccceeeeEEEEEEeC--------CeEEEEEEEeCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY--IE--------------SYISTIGVDFKIRTVEQD--------GKTIKLQIWDTA   65 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   65 (203)
                      +|+++|+.++|||||+.+|+....  ..              +.....++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999985321  00              111112222222223333        336889999999


Q ss_pred             CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      |+..|.......+..+|++++|+|+.++...+....    +......+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~----l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV----LRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH----HHHHHHcCCCEEEEEECCCcc
Confidence            999998888899999999999999998755433222    222223368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.75  E-value=8e-18  Score=132.24  Aligned_cols=165  Identities=24%  Similarity=0.346  Sum_probs=123.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .....+||+++|..|+||||||-.|+...++...++-...  .....++....+..++.|++....-+.....-++.+|+
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            3467899999999999999999999998887665543321  11113333333668899998766555555677899999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHH-HHHHHHHhC-C-cEEEeecCCCCC
Q 028813           84 IIIVYDVTDQESFNNVK-QWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYET-AKAFADEIG-I-PFMETSAKDSTN  157 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~  157 (203)
                      +.++++++++.+++.+. .|+..++....  ...|+|+|+||.|.......+.+. ...++..+. + ..++|||++..+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            99999999999999985 59999977653  479999999999997665553333 444444444 3 589999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      +.++|..-.+.+.
T Consensus       163 ~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  163 VSELFYYAQKAVI  175 (625)
T ss_pred             hHhhhhhhhheee
Confidence            9999988665543

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.1e-16  Score=123.77  Aligned_cols=159  Identities=18%  Similarity=0.161  Sum_probs=118.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +.+=|.++|+...|||||+.++-.........-..+..+....+..+. ....++|+|||||+.|..+...-..-+|++|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            456789999999999999999998887666665555555555555541 2357899999999999998888888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST  156 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  156 (203)
                      ||+++++.---+    ..+.+......+.|+++.+||+|..+.+   .+....-..+++         ..++++||++|.
T Consensus        84 LVVa~dDGv~pQ----TiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQ----TIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchh----HHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            999999864322    2233433444489999999999987433   233333333344         469999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASIKDR  172 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~  172 (203)
                      |+++++..+.-....+
T Consensus       157 Gi~eLL~~ill~aev~  172 (509)
T COG0532         157 GIDELLELILLLAEVL  172 (509)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999987655444

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=1.4e-16  Score=118.79  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC--CCC---------------cc---ccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY--IES---------------YI---STIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~--~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      -+|+++|++|+|||||+++|+...-  ...               +.   ...+.++......+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            3699999999999999999984211  000               00   001222333333333344899999999998


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      +|.......++.+|++|+|+|+++.... ....++....   ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence            8877677778999999999999875332 2223333332   236899999999998554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.74  E-value=1.4e-16  Score=125.23  Aligned_cols=146  Identities=16%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ....++|+++|+.++|||||+++|++...                +.+.....+  .......+.....++.++||||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGIT--INTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeE--EeeeEEEEcCCCeEEEEEECCCHH
Confidence            35789999999999999999999986311                111123333  333344444444688999999998


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccC---CHHHHHHHHHHh-
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETAKAFADEI-  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~-  143 (203)
                      +|.......+..+|++++|+|+..+..- .....+..+..   .+.|.+ +++||+|+.+....   ...++..+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            8866666778899999999999875322 22233333332   257865 58999998643221   112333444333 


Q ss_pred             ----CCcEEEeecCCCC
Q 028813          144 ----GIPFMETSAKDST  156 (203)
Q Consensus       144 ----~~~~~~~Sa~~~~  156 (203)
                          +++++++|++++.
T Consensus       163 ~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        163 FPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCccCCcEEEeeccccc
Confidence                3689999999975

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=5.2e-17  Score=127.98  Aligned_cols=148  Identities=23%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------------CccccceeeeEEEEEEeCCe
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ++|+++|+.++|||||+.+|+...-  ..                               +.....+.+.....+..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence            5899999999999999999974221  00                               111122333333444444  


Q ss_pred             EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--  133 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~--  133 (203)
                      ..++.++||||+..|.......+..+|++++|+|+..+..-+.. +.+..+....  ..++++++||+|+.+......  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence            36889999999998866666678899999999999865332221 2122222222  246888999999864322111  


Q ss_pred             --HHHHHHHHHhC---CcEEEeecCCCCCHHHH
Q 028813          134 --ETAKAFADEIG---IPFMETSAKDSTNVEQA  161 (203)
Q Consensus       134 --~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~  161 (203)
                        +.+..+....+   ++++++||++|.|+.+.
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence              22223333333   57999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.73  E-value=1.3e-16  Score=126.56  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=98.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC------C----------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD------S----------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|+++|+.++|||||+++|.+.      .          .+.+..+..+.+  .....+.....++.++||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence            56799999999999999999999732      1          011222333434  33444444457889999999988


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCCH---HHHHHHHHHh--
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY---ETAKAFADEI--  143 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~~---~~~~~~~~~~--  143 (203)
                      |.......+..+|++++|+|+.+...-+ ..+.+..+..   .++| +++++||+|+.+......   .++.++....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7665656667899999999998653211 1222333322   2578 578899999865332111   1222333322  


Q ss_pred             ---CCcEEEeecC---CCCC-------HHHHHHHHHHHH
Q 028813          144 ---GIPFMETSAK---DSTN-------VEQAFMAMAASI  169 (203)
Q Consensus       144 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~  169 (203)
                         .++++++|+.   ++.|       +.++++.|.+.+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               3678888876   4544       556666655544

>PLN03126 Elongation factor Tu; Provisional

Probab=99.73  E-value=1.9e-16  Score=126.33  Aligned_cols=147  Identities=16%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS----------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      .+..++|+++|++++|||||+++|++..                ...+.....+.+.....+..+  ...+.++|+||+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHH
Confidence            4568999999999999999999998521                011222333333333334333  4688999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHh-
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEI-  143 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~-  143 (203)
                      .|.......+..+|++++|+|+.+....+. ++++..+...   ++| +++++||+|+.+....   ..+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            987777777889999999999987543222 3333333332   577 7788999998653221   112344444443 


Q ss_pred             ----CCcEEEeecCCCCC
Q 028813          144 ----GIPFMETSAKDSTN  157 (203)
Q Consensus       144 ----~~~~~~~Sa~~~~~  157 (203)
                          .++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999998854

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=1.9e-16  Score=118.59  Aligned_cols=144  Identities=19%  Similarity=0.277  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---   73 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---   73 (203)
                      ..++|+++|.+|+|||||+|+|++..+...          ..++.+.......+..++..+++.+|||||.......   
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998776433          2334444555556666777789999999994332110   


Q ss_pred             -----------------------hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           74 -----------------------TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        74 -----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                                             ....+.  .+|+++|+++.+... +....  ++.++.... ++|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence                                   001222  477888888876421 11110  222333332 5899999999998653


Q ss_pred             cc--CCHHHHHHHHHHhCCcEEEeecCC
Q 028813          129 KV--VSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus       129 ~~--~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      .+  .....+.+.+..+++++|......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            22  234456677778899999876543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.73  E-value=7.3e-17  Score=116.83  Aligned_cols=165  Identities=18%  Similarity=0.313  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-----cchhhhccCCcE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-----TITSSYYRGAHG   83 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~d~   83 (203)
                      ||+++|+.+|||||+.+.+..+..+.+.. -..+.+.....+... ..+.+.+||+||+..+.     ......++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999988766543322 112233344444322 23689999999987543     345667899999


Q ss_pred             EEEEEECCChhhHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--C----CHHHHHHHHHHhC---CcEEEee
Q 028813           84 IIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLLVGNKCDLTANKV--V----SYETAKAFADEIG---IPFMETS  151 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~S  151 (203)
                      +|||+|+.+.+..+.+   ...+..+.... ++..+.++++|+|+..+..  .    ..+.+.+.....+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999999854433333   33444444444 4688999999999865321  1    1122333333445   7799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813          152 AKDSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      ..+ ..+-++|..+++.+..+.+.-.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le  183 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLE  183 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence            998 5999999999999887666544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.73  E-value=1.4e-16  Score=126.47  Aligned_cols=149  Identities=18%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+...-                               +.+.....+++  .....+..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKFET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEecC
Confidence            4568999999999999999999874110                               11112222333  33333444


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF-------NNVKQWLNEIDRYASDNVN-KLLVGNKCDLT  126 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~  126 (203)
                      ....+.++|+||+.+|.......+..+|++|+|+|+.+. .+       ....+.+..+..   .++| +++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence            457899999999999988888889999999999999873 12       122333322222   2564 68889999975


Q ss_pred             CCc--c----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHH
Q 028813          127 ANK--V----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQ  160 (203)
Q Consensus       127 ~~~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  160 (203)
                      +..  .    ...+++..++...+     ++++++|+++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211  1    11344556666555     6799999999999864

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.72  E-value=1.7e-16  Score=126.15  Aligned_cols=150  Identities=17%  Similarity=0.162  Sum_probs=97.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SY-----------------------------IESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+..  ..                             ..+.....+.+.....  +..
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~   82 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--Ecc
Confidence            56789999999999999999998751  10                             1111222333333333  344


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~  127 (203)
                      ....+.|+|+||+.+|.......+..+|++++|+|+..+.-   +   ....+.+..+...   ++| +++++||+|...
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence            44789999999999998778778899999999999986520   0   1222222233222   555 678999999532


Q ss_pred             --CccCC----HHHHHHHHHHh-----CCcEEEeecCCCCCHHH
Q 028813          128 --NKVVS----YETAKAFADEI-----GIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       128 --~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  160 (203)
                        ..+..    .+++..+....     +++++++|+++|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11111    22333333333     36799999999999864

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=4.3e-16  Score=115.02  Aligned_cols=155  Identities=23%  Similarity=0.189  Sum_probs=112.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-------ccccchhhhcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-------RFRTITSSYYR   79 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~   79 (203)
                      ---+++++|+|++|||||+++|++........+.++.+.....+.+++  .++++.|+||.-       ..........+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            346899999999999999999999887666667777788888888888  889999999832       11234556789


Q ss_pred             CCcEEEEEEECCChhh-HHHHHHHHHHHHh-----------------------------------------hc-------
Q 028813           80 GAHGIIIVYDVTDQES-FNNVKQWLNEIDR-----------------------------------------YA-------  110 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~-----------------------------------------~~-------  110 (203)
                      .||++++|+|+..... .+.+...+....-                                         +.       
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986544 4444333222100                                         00       


Q ss_pred             -----------------CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          111 -----------------SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       111 -----------------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                                       ..-+|.+.|.||.|+...     +....+.+..  ..+.+||..+.|++++.+.|.+.+.
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             002677999999998652     3333333333  7899999999999999999998875

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.72  E-value=3.6e-16  Score=102.61  Aligned_cols=106  Identities=25%  Similarity=0.228  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhcc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYYR   79 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   79 (203)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+..++  ..+.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998543 223333444444455666666  55679999995321         111223348


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK  122 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK  122 (203)
                      .+|++++|+|+.++.. +.....+..++    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877422 22233334442    47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.72  E-value=1.7e-16  Score=127.05  Aligned_cols=152  Identities=22%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------------CccccceeeeEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVEQ   52 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~   52 (203)
                      +..++|+++|++++|||||+.+|+...-  ..                               +.....+++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            5679999999999999999999985321  10                               00111223333333333


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813           53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~  132 (203)
                        ...++.|+||||+..|.......+..+|++++|+|+..+..-.. .+.+..+....  ..|+++++||+|+.+.....
T Consensus       105 --~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        105 --EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             --CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHH
Confidence              34688999999998886555556789999999999986532111 11112222222  24788999999986432211


Q ss_pred             HHH----HHHHHHHh----CCcEEEeecCCCCCHHHHH
Q 028813          133 YET----AKAFADEI----GIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus       133 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~~  162 (203)
                      .+.    +..+....    .++++++||++|.|+.++-
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            222    22222232    3689999999999998754

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.71  E-value=7.6e-16  Score=124.37  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------CccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE--------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+.-+|+|+|++++|||||.++|+.  +....                    +.....++......+.+++  +.+.+||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD   85 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD   85 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence            4566999999999999999999973  11100                    0001112222233444444  8899999


Q ss_pred             CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |||+..|.......+..+|++|+|+|+.+.... ....++....   ..+.|+++++||+|+..
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence            999998887777788999999999999875322 2233333332   24789999999999753

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.70  E-value=2.6e-16  Score=124.75  Aligned_cols=163  Identities=13%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEE---------------EeCC-------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTV---------------EQDG-------------   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-------------   54 (203)
                      -..++|+++|+...|||||+.+|++...   +.+.....+.+......               ..+.             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999997433   22222221111111000               0000             


Q ss_pred             ---eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           55 ---KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        55 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                         -...+.|+|+||+..|.......+..+|++++|+|+.++.......+.+..+....  -.++++++||+|+.+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence               02468999999999887777777889999999999987421112223333332222  2468899999998653221


Q ss_pred             --CHHHHHHHHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          132 --SYETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       132 --~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                        ..+++.++...   .+.+++++||++|.|++.+++.|.+.+.
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence              12233333322   2578999999999999999999886553

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=9.5e-16  Score=114.88  Aligned_cols=148  Identities=19%  Similarity=0.280  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC----c--------------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIES----Y--------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+++|.+|+|||||+++|+.......    .              ....+.......+.+++  .++.+|||||+.++.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            589999999999999999975321100    0              01122223334455554  788999999998887


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEE--
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME--  149 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (203)
                      ..+...+..+|++++|+|+++.........| ..+.   ..+.|.++++||+|.....  ..+....+....+.+++.  
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            7788889999999999999886554332222 2232   2368999999999986542  123344444455554433  


Q ss_pred             eecCCCCCHHHHHHHH
Q 028813          150 TSAKDSTNVEQAFMAM  165 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l  165 (203)
                      +...++.++..+.+.+
T Consensus       153 ip~~~~~~~~~~vd~~  168 (268)
T cd04170         153 LPIGEGDDFKGVVDLL  168 (268)
T ss_pred             ecccCCCceeEEEEcc
Confidence            3445555554444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.1e-16  Score=119.28  Aligned_cols=179  Identities=19%  Similarity=0.246  Sum_probs=113.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      +..++++++|+..+|||||+-+|+...                               ...+...+.+++.....+  ..
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f--et   82 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF--ET   82 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe--ec
Confidence            567999999999999999999987421                               122233333444444444  44


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      ..+.++|+|+||+..|......-..++|+.|||+|+.+.+   .+   .+.++.+-..+...  -..+++++||+|..+-
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~w  160 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSW  160 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccccc
Confidence            4478999999999999888888889999999999998763   11   11122222222222  2457888999999875


Q ss_pred             ccCCHHHHHH----HHHHhC-----CcEEEeecCCCCCHHHHH---HH-----HHHHHHHHhccCCCCCCCCCCccccc
Q 028813          129 KVVSYETAKA----FADEIG-----IPFMETSAKDSTNVEQAF---MA-----MAASIKDRMASQPSMNNARPPTVQIK  190 (203)
Q Consensus       129 ~~~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~~i~~~~---~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (203)
                      ++..++++..    +.+..|     ++++++|+..|+|+.+.-   .|     |.+++.  .-+.|......|..+++.
T Consensus       161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd--~~~~p~~~~d~Plr~pI~  237 (428)
T COG5256         161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD--QLEPPERPLDKPLRLPIQ  237 (428)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh--ccCCCCCCCCCCeEeEee
Confidence            4444443322    333333     579999999999986643   22     334443  123333345555555554

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=7.2e-16  Score=117.11  Aligned_cols=158  Identities=15%  Similarity=0.184  Sum_probs=97.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEE---------------------eCC-eEEEEEEEeCCCc-
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE---------------------QDG-KTIKLQIWDTAGQ-   67 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~-   67 (203)
                      |+++|.||+|||||+++|++........+..+.+.......                     .++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998775433333333333322221                     122 3367999999996 


Q ss_pred             ---cccccchhh---hccCCcEEEEEEECCC---------------hh-hHH----HHHHH-HHH---------------
Q 028813           68 ---ERFRTITSS---YYRGAHGIIIVYDVTD---------------QE-SFN----NVKQW-LNE---------------  105 (203)
Q Consensus        68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~~-s~~----~~~~~-~~~---------------  105 (203)
                         ++...+...   .++.+|++++|+|+..               |. .++    ++..| +..               
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333333   4899999999999963               11 111    11111 000               


Q ss_pred             -----------HH--------------h---------------------hcCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q 028813          106 -----------ID--------------R---------------------YASDNVNKLLVGNKCDLTANKVVSYETAKAF  139 (203)
Q Consensus       106 -----------i~--------------~---------------------~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~  139 (203)
                                 +.              .                     .....+|+++++||.|+......    ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                       00              0                     00124799999999997533221    1122


Q ss_pred             HHHh-CCcEEEeecCCCCCHHHHHH-HHHHHHHHH
Q 028813          140 ADEI-GIPFMETSAKDSTNVEQAFM-AMAASIKDR  172 (203)
Q Consensus       140 ~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~  172 (203)
                      .... ...++.+||+.+.++.++.+ .+.+.+.+.
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            2233 45799999999999999997 688877543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.69  E-value=2.1e-15  Score=107.99  Aligned_cols=161  Identities=17%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--cccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----c-------hh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----I-------TS   75 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~-------~~   75 (203)
                      ++|+++|.+|+|||||+|++++.......  .+..+.........+.+  ..+.++||||......    .       ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654333  22333344444445555  6889999999553321    0       11


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCccC------CHHHHHHHHHHhCCcE
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVV------SYETAKAFADEIGIPF  147 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  147 (203)
                      ......|+++||+++.. .+-.. ...+..+......  -.++++++|+.|......+      ....++.+....+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            12467899999999886 22111 2223333322211  2478899999997654321      1133455555555556


Q ss_pred             EEeec-----CCCCCHHHHHHHHHHHHHHHh
Q 028813          148 METSA-----KDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       148 ~~~Sa-----~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      +..+.     ..+.++.++++.|.+.+.++.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            55554     457889999999888887643

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=4.5e-16  Score=129.12  Aligned_cols=151  Identities=23%  Similarity=0.239  Sum_probs=95.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------ccccceeeeEEEEEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------------------------------YISTIGVDFKIRTVE   51 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   51 (203)
                      ....++|+++|++++|||||+++|+...-.-.                                 ...+.+.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            45678999999999999999999985321100                                 001122222223333


Q ss_pred             eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      .+  ..++.|+||||+..+.......+..+|++++|+|+..+..-+. .+.+..+....  ..++++++||+|+.+....
T Consensus       101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhH
Confidence            33  3678899999998876555566789999999999976532111 12222222221  2578889999998642221


Q ss_pred             CHH----HHHHHHHHhC---CcEEEeecCCCCCHHH
Q 028813          132 SYE----TAKAFADEIG---IPFMETSAKDSTNVEQ  160 (203)
Q Consensus       132 ~~~----~~~~~~~~~~---~~~~~~Sa~~~~~i~~  160 (203)
                      ..+    ++.++....+   ++++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    2223334444   4699999999999985

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.5e-15  Score=118.98  Aligned_cols=156  Identities=20%  Similarity=0.140  Sum_probs=117.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++..-|.|+|+...|||||+.+|-+.........+.+..+....+..+ ..-+++|.||||+..|..+...-....|++|
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            567789999999999999999999888766555555544444444444 2268999999999999999988888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---------CcEEEeecCCCC
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---------IPFMETSAKDST  156 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  156 (203)
                      +|+.+.|.--    .+..+.|......+.|+++.+||+|.++.+   .+....-...+|         .+++++||++|.
T Consensus       230 LVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            9999988643    233344544455589999999999976433   333333333333         479999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASI  169 (203)
Q Consensus       157 ~i~~~~~~l~~~~  169 (203)
                      |++.+-+.+.-+.
T Consensus       303 nl~~L~eaill~A  315 (683)
T KOG1145|consen  303 NLDLLEEAILLLA  315 (683)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999999877544

>PRK13351 elongation factor G; Reviewed

Probab=99.69  E-value=9.7e-16  Score=128.36  Aligned_cols=116  Identities=17%  Similarity=0.233  Sum_probs=82.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--------C-----C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--------E-----S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +...+|+|+|..++|||||+++|+...-.        .     .     .....+.......+.+.+  ..+.+|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence            45679999999999999999999853210        0     0     011122223333444544  78999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      .++...+..+++.+|++++|+|+++.........| ..+.   ..++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD---RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---hcCCCEEEEEECCCCCC
Confidence            98888888899999999999999987665544333 2232   23689999999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.9e-16  Score=113.64  Aligned_cols=165  Identities=19%  Similarity=0.251  Sum_probs=109.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEE-EeCCeEEEEEEEeCCCccc-------cccchhhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQER-------FRTITSSY   77 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~-------~~~~~~~~   77 (203)
                      ...++|+++|.+|+|||||||+|+.+...+...-..+.+...... .+++  -.+.+||+||.++       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            467999999999999999999999765543332222222222222 2233  4789999999543       66677888


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------cCCHHHHHHHHHH--------
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-------VVSYETAKAFADE--------  142 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~--------  142 (203)
                      +...|.+++++++.|++--.....|...+ ...- +.++++++|.+|...+-       ......++++..+        
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHH-Hhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999886433323333333 2222 37899999999975431       1111222222211        


Q ss_pred             h--CCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          143 I--GIPFMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       143 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      .  --|++.++.+.+.|++++...+++.+.....
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            1  1488999999999999999999998874433

>PRK12739 elongation factor G; Reviewed

Probab=99.67  E-value=2.4e-15  Score=125.78  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ++..+|+|+|++++|||||+++|+...-                  +.+.....+.+.....+.+++  .++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            4678999999999999999999974211                  011233445555556666665  78999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ..+...+...+..+|++|+|+|+.++...... ..+..+   ...++|.++++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~---~~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA---DKYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECCCCCC
Confidence            88777788889999999999999876432222 222222   233689999999999864

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.3e-15  Score=119.22  Aligned_cols=163  Identities=20%  Similarity=0.200  Sum_probs=119.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccccceeeeEEEEEE-eCCeEEEEEEEeCCCcc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY---------------IESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~   68 (203)
                      .++.=++.|+.+...|||||..+|+...-               .-+.+.+.++......+. .+++.+.+.++||||+.
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            35667899999999999999999974221               112233333333322222 23566899999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcE
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPF  147 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~  147 (203)
                      +|......-+..+|++++|+|+++.-..+.+..++..++.    +..+|.|+||+|++..+.. -..++.+++.....+.
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence            9998888889999999999999988776666666655533    6788999999999765432 1223344444444689


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      +.+||++|.|+.++++.|++.+..
T Consensus       213 i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhCCC
Confidence            999999999999999999988753

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.6e-15  Score=117.49  Aligned_cols=166  Identities=20%  Similarity=0.196  Sum_probs=112.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccc--------hhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTI--------TSS   76 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--------~~~   76 (203)
                      ..++|+|+|+||+|||||+|+|...... .++.++++.+.-...++++|  +.+.+.||+|..+ -...        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4589999999999999999999987654 45667777777788888888  8899999999654 1111        222


Q ss_pred             hccCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCC-ccCCHHHHHHHHH-Hh-CC
Q 028813           77 YYRGAHGIIIVYDVTD--QESFNNVKQWLNEIDRYAS------DNVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EI-GI  145 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~------~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~-~~-~~  145 (203)
                      -+..+|++++|+|+..  -.+...+...++.......      ...|++++.||.|+... ..+...-...... .. ..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            4678999999999943  3333333333333321111      24789999999998654 2222211111111 11 23


Q ss_pred             c-EEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          146 P-FMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       146 ~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      + +.++|+++++|++++...|.+.+.....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            3 4569999999999999999988876654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=7.6e-15  Score=122.87  Aligned_cols=142  Identities=17%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +..-+|+|+|++++|||||+++|+...-.                  .+.....+.+.....+.+++  .++.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence            45679999999999999999999742110                  01122334444555666655  78999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--  145 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--  145 (203)
                      ..+...+...+..+|++++|+|+.+....... .++..+.   ..+.|+++++||+|+....  ......++...++.  
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~  159 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN---RYEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANA  159 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCc
Confidence            88877788889999999999999876543332 2222232   2368999999999987543  12233444444442  


Q ss_pred             --cEEEeecCCC
Q 028813          146 --PFMETSAKDS  155 (203)
Q Consensus       146 --~~~~~Sa~~~  155 (203)
                        ..+++|+..+
T Consensus       160 ~~~~ipis~~~~  171 (689)
T TIGR00484       160 VPIQLPIGAEDN  171 (689)
T ss_pred             eeEEeccccCCC
Confidence              2345555444

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.63  E-value=1.6e-15  Score=96.64  Aligned_cols=137  Identities=26%  Similarity=0.291  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhccCCcEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGI   84 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~   84 (203)
                      -||+++|..|+|||||.+.|.+....  +..|+..+       ++.    =..+||||.-    ++..........+|++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FND----KGDIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh--hcccceee-------ccC----ccccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            37999999999999999999986642  22333322       211    1245999843    2222233346889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|-+++++.+.-.     ..+...  ..+|+|-|++|.|+.++.  ..+..+.|..+-|. ++|++|+.++.|++++++
T Consensus        69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            99999999865210     111111  245799999999997643  44667778888886 799999999999999999


Q ss_pred             HHHH
Q 028813          164 AMAA  167 (203)
Q Consensus       164 ~l~~  167 (203)
                      +|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8864

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.63  E-value=2.3e-14  Score=112.02  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ---------------------D-GKTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g   66 (203)
                      ++|+++|.||+|||||+++|++........+..+.+.......+                     + .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987765433344443333322221                     1 1236789999999


Q ss_pred             cc----ccccchhhh---ccCCcEEEEEEECC
Q 028813           67 QE----RFRTITSSY---YRGAHGIIIVYDVT   91 (203)
Q Consensus        67 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   91 (203)
                      ..    ....+-..+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    222222233   78999999999996

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.63  E-value=1.1e-15  Score=106.32  Aligned_cols=117  Identities=26%  Similarity=0.376  Sum_probs=71.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhh---ccCCcE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSY---YRGAHG   83 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~   83 (203)
                      .-.|+++|+.|||||+|+..|..+.........   +... .+.. ......+.++|+||+.+.+......   ...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            356999999999999999999987543332222   1111 1222 2223468899999999887655544   778999


Q ss_pred             EEEEEECCC-hhhHHHHHH-HHHHHH--hhcCCCCcEEEEEeCCCCCCC
Q 028813           84 IIIVYDVTD-QESFNNVKQ-WLNEID--RYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        84 ~i~v~d~~~-~~s~~~~~~-~~~~i~--~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      +|||+|.+. ...+..+.+ ++..+.  .......|++|+.||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999874 334444444 344332  223467999999999998654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.61  E-value=6e-15  Score=114.52  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=122.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---------hh
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---------TS   75 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~   75 (203)
                      .+..-.++++|-|++|||||++.+........+.++++......++++.-  .+++++||||.-+....         +.
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence            45667899999999999999999998888777777777777778877755  78889999995432111         11


Q ss_pred             hhccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHH---HHHHHHHhCCcEEEe
Q 028813           76 SYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET---AKAFADEIGIPFMET  150 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  150 (203)
                      ...+--.+|+|+.|++...  +...-.++++.|+.+.. +.|.|+|+||+|+.....+..+.   +..+...-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            1223345799999998754  45555567777766655 58999999999998777665543   233334445899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      |..+.+|+-++....++.+..++
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHH
Confidence            99999999998888777665443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.60  E-value=3.3e-14  Score=109.91  Aligned_cols=161  Identities=22%  Similarity=0.248  Sum_probs=120.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCCCccccceeeeEEEEEEe---CCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      ++.-+..++.+-..|||||..+|+...               ..-+.+.+.++......+.+   ++..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            455568889999999999999987422               11233344444444444433   447799999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--  145 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--  145 (203)
                      -.|.-....-+..+.+.++|+|+++.-..+.+...+..+..    +.-++-|+||+|++..+.  ....+++..-.|+  
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence            98877777778888999999999998887888887777754    567899999999976542  2333445555665  


Q ss_pred             -cEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          146 -PFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       146 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                       ..+.+||++|.|++++++.|++.+..-
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCCCC
Confidence             478999999999999999999988644

>PRK09866 hypothetical protein; Provisional

Probab=99.60  E-value=1e-13  Score=111.76  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=71.9

Q ss_pred             EEEEEEeCCCccc-----cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           57 IKLQIWDTAGQER-----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        57 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      .++.|+||||...     ........+..+|+++||+|+....+... ....+.+.... ...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            3578999999643     22234446899999999999987433222 12233333321 12599999999998643333


Q ss_pred             CHHHHHHHHH----HhC---CcEEEeecCCCCCHHHHHHHHHH
Q 028813          132 SYETAKAFAD----EIG---IPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       132 ~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ..+.+..+..    ..+   ..+|++||+.|.|++++++.|..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            3444544432    112   36999999999999999999876

>PRK00007 elongation factor G; Reviewed

Probab=99.59  E-value=4.8e-14  Score=118.02  Aligned_cols=143  Identities=18%  Similarity=0.215  Sum_probs=93.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--YI----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      .++..+|+|+|.+++|||||+++|+...  ..                .+.....+.+.....+.+.+  ..+.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            4567899999999999999999997311  10                01233344455555666665  7899999999


Q ss_pred             ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-
Q 028813           67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-  145 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-  145 (203)
                      +..+.......+..+|++++|+|+...-..+....| ..+.   ..+.|.++++||+|+.+..  ......++...++. 
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~  158 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN  158 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            887766667778899999999998866433332222 2222   2368899999999987543  22333444444442 


Q ss_pred             ---cEEEeecCCC
Q 028813          146 ---PFMETSAKDS  155 (203)
Q Consensus       146 ---~~~~~Sa~~~  155 (203)
                         ..+++|+..+
T Consensus       159 ~~~~~ipisa~~~  171 (693)
T PRK00007        159 PVPIQLPIGAEDD  171 (693)
T ss_pred             eeeEEecCccCCc
Confidence               3455555554

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=2.4e-14  Score=115.77  Aligned_cols=118  Identities=14%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--C----------------ccccceeeeEEEEEEeCCeEEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE--S----------------YISTIGVDFKIRTVEQDGKTIKLQIWDTA   65 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~--~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (203)
                      .+..+|+|+|++++|||||+++|+.  +....  .                .....+.++......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4667999999999999999999863  11100  0                00111233333333334344899999999


Q ss_pred             CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |+..|.......+..+|++|+|+|+.+... .....++....   ..+.|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR---LRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH---hcCCCEEEEEECccccC
Confidence            998887767777899999999999987422 12233333332   23689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=3.6e-14  Score=118.82  Aligned_cols=108  Identities=22%  Similarity=0.267  Sum_probs=75.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchh
Q 028813           14 IGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS   75 (203)
Q Consensus        14 ~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   75 (203)
                      +|++++|||||+++|+...-.                  .+...+.+.......+.+.+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999642210                  01112333444445555655  7899999999988777778


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ..+..+|++++|+|+++.........| ..+.   ..+.|+++|+||+|...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence            888999999999999886554433222 2232   23689999999999853

>PTZ00258 GTP-binding protein; Provisional

Probab=99.56  E-value=1.1e-13  Score=107.31  Aligned_cols=86  Identities=21%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc-
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER-   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~-   69 (203)
                      ...++|+++|.||+|||||+|+|.+........|.++.+.....+.+.+..               .++.++|+||... 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            567899999999999999999999877665555666666666666554322               3589999999432 


Q ss_pred             ------cccchhhhccCCcEEEEEEECC
Q 028813           70 ------FRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        70 ------~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                            ........++.+|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112333467899999999973

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1e-13  Score=96.67  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc---CCcEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAHGII   85 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i   85 (203)
                      -.|+++|+.+||||+|+-.|..+.....   -+.++.....+..+.  -..+++|.||+.+.+.....++.   .+-++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            4699999999999999998887743222   123344455555555  34789999999988777767766   788999


Q ss_pred             EEEECCC--hhhHHHHHHHHHHHHhh--cCCCCcEEEEEeCCCCCCCcc------CCHHHHHHHHHH-------------
Q 028813           86 IVYDVTD--QESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLTANKV------VSYETAKAFADE-------------  142 (203)
Q Consensus        86 ~v~d~~~--~~s~~~~~~~~~~i~~~--~~~~~p~ilv~nK~D~~~~~~------~~~~~~~~~~~~-------------  142 (203)
                      ||+|...  ++--+..+-++..+...  .....|++++.||.|+.-...      ..+.++..+...             
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999652  22222233344444333  456789999999999853321      001111111000             


Q ss_pred             -------------------hCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          143 -------------------IGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       143 -------------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                                         ..+.+.++|++.+ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                               1235778899988 899999998764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.54  E-value=2.8e-13  Score=115.95  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE----------------EEEEEEeCCCccccccchhhhccCCc
Q 028813           19 VGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT----------------IKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus        19 sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++||||+.++.+.........+.+..+....+..+...                -.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            34999999999988766555555544444444333110                13799999999999887777788899


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-------------HHHHHHH-------
Q 028813           83 GIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-------------YETAKAF-------  139 (203)
Q Consensus        83 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~~~~~~~-------  139 (203)
                      ++++|+|+++   +.+.+.+    ..+..   .+.|+++++||+|+.......             .....++       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999987   3333332    22322   268999999999985321100             0001111       


Q ss_pred             ---HHHh---------------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          140 ---ADEI---------------GIPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       140 ---~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                         ..++               .++++++||++|+|+++++.+|......
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence               0111               3589999999999999999988765544

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.54  E-value=3.1e-13  Score=99.59  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=73.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc--c-c-------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--T-I-------   73 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------   73 (203)
                      ....++|+|+|.+|+|||||+|+|++...... .....+..........++  ..+.+|||||.....  . .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45779999999999999999999998765322 222223333333334444  678999999965431  0 0       


Q ss_pred             hhhhc--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028813           74 TSSYY--RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANK  129 (203)
Q Consensus        74 ~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~  129 (203)
                      ...++  ...|+++||..++... .... ...+..+......  -.++++|+||+|...+.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            11223  2578888887665432 1111 2233333332221  14689999999986543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=6.1e-13  Score=99.65  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS   75 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   75 (203)
                      +....++|+++|.+|+||||++|++++..... +...+.+..........++  .++.++||||..+....       .+
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence            34578999999999999999999999876432 1222222222222333444  78999999996543211       11


Q ss_pred             hhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCC
Q 028813           76 SYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        76 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~  132 (203)
                      .++  ...|+++||..++.......-...+..+.....  --.+.++++|+.|...++...
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            111  258999999665422111010122222322211  124689999999976544333

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.52  E-value=7.7e-13  Score=95.73  Aligned_cols=162  Identities=18%  Similarity=0.220  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--ccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh----
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS----   75 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~----   75 (203)
                      ++|+++|.+||||||++|.+++........  ...+..........++  ..+.++||||.......       ..    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987654432  2233344455556777  78899999994322111       11    


Q ss_pred             hhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-------HHHHHHHHHHhCCc
Q 028813           76 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIP  146 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  146 (203)
                      ......++++||+.+. +.+..  .+.+++..+.... --..++||+|..|......+.       ...++++....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            1235689999999988 32222  2222333221110 013588889999876554311       12244555566667


Q ss_pred             EEEeecC------CCCCHHHHHHHHHHHHHHHhc
Q 028813          147 FMETSAK------DSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       147 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      |..++..      ....+.+++..+-+.+.++..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            8877766      335688888888777776654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.5e-13  Score=100.79  Aligned_cols=150  Identities=23%  Similarity=0.261  Sum_probs=101.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCccccceeeeEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY---------------------------------IESYISTIGVDFKIRTVEQ   52 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   52 (203)
                      ...++.+-+|+..-||||||-+|+....                                 ..+.+.+.+++....-+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            4679999999999999999999975321                                 1112223344444444433


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813           53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~  132 (203)
                        .+.+|.+-||||+++|-..+..-..-+|+.|+++|+...- +++.+. ...|..+.. -..+++.+||+|+.+..+..
T Consensus        84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence              3478999999999999777766677889999999996432 222222 112222222 25688899999998876544


Q ss_pred             HHH----HHHHHHHhCC---cEEEeecCCCCCHHH
Q 028813          133 YET----AKAFADEIGI---PFMETSAKDSTNVEQ  160 (203)
Q Consensus       133 ~~~----~~~~~~~~~~---~~~~~Sa~~~~~i~~  160 (203)
                      ++.    ...|+..+++   .++++||+.|+|+-.
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            443    3456666664   699999999999754

>TIGR00101 ureG urease accessory protein UreG

Probab=99.51  E-value=3.7e-13  Score=96.20  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      .+..++++.|..-......   .-+|.+|.|+|+.+.+....  .+..++      ...-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            4667788888422222121   12578999999987665321  111222      122388999999975323334444


Q ss_pred             HHHHHH--hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          137 KAFADE--IGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       137 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      .+..+.  .+.+++++|+++|.|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444444  347999999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.50  E-value=3.8e-13  Score=103.91  Aligned_cols=160  Identities=15%  Similarity=0.225  Sum_probs=108.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--CC------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS--YI------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      .-+|+|+.+...|||||+..|+...  +.            ...+.--++++-.+...+..+.+++.|.||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            4579999999999999999998532  11            011122344455554444444589999999999999999


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHH-------hCC
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADE-------IGI  145 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~  145 (203)
                      ....+.-+|++++++|+.+..-    .+..-.++.....+.+.|+|+||+|.+..+.. -.++...++..       +++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM----PQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM----PQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC----CchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999987532    11122233333346677889999998765421 11223333333       357


Q ss_pred             cEEEeecCCCC----------CHHHHHHHHHHHHHH
Q 028813          146 PFMETSAKDST----------NVEQAFMAMAASIKD  171 (203)
Q Consensus       146 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~  171 (203)
                      |+++.|++.|.          ++.-+|+.|++.+..
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            89999988774          577777777776653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.50  E-value=1e-13  Score=102.21  Aligned_cols=96  Identities=24%  Similarity=0.350  Sum_probs=77.1

Q ss_pred             cccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP  146 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  146 (203)
                      +++..+.+.++.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+......+..+.+ ..++++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            566777778999999999999999887 89999999976643   4689999999999965444333334444 357889


Q ss_pred             EEEeecCCCCCHHHHHHHHHH
Q 028813          147 FMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       147 ~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ++++||++|.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd00066 G-alpha G protein alpha subunit

Probab=99.50  E-value=1.2e-12  Score=100.19  Aligned_cols=123  Identities=23%  Similarity=0.256  Sum_probs=83.7

Q ss_pred             EEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCcEE
Q 028813           49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVNKL  117 (203)
Q Consensus        49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p~i  117 (203)
                      .+.+++  +.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+ ....-.+.|++
T Consensus       155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil  232 (317)
T cd00066         155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII  232 (317)
T ss_pred             EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence            344443  7889999999999999999999999999999999874          2333333333333 22222578999


Q ss_pred             EEEeCCCCCCCc----------------cCCHHHHHHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          118 LVGNKCDLTANK----------------VVSYETAKAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       118 lv~nK~D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      |++||.|+....                ....+....+...          ..+....++|.+..++..+|+.+.+.+..
T Consensus       233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            999999963211                1122333222211          12456778899999999999998888875


Q ss_pred             Hh
Q 028813          172 RM  173 (203)
Q Consensus       172 ~~  173 (203)
                      ..
T Consensus       313 ~~  314 (317)
T cd00066         313 NN  314 (317)
T ss_pred             HH
Confidence            43

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.50  E-value=1.1e-13  Score=116.19  Aligned_cols=118  Identities=18%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC---------------CCC-Cccccceee--eEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS---------------YIE-SYISTIGVD--FKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ++..+|+++|+.++|||||+++|+...               +.. +.....++.  .....+..++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            466799999999999999999997421               100 001111211  11222334556689999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ..|.......+..+|++++|+|+.+....+....|.. +   ...+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~---~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-A---LKENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-H---HHcCCCEEEEEEChhccc
Confidence            9887778888999999999999987533222222221 2   223578889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.50  E-value=8.8e-13  Score=97.73  Aligned_cols=163  Identities=15%  Similarity=0.293  Sum_probs=116.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC--eEEEEEEEeCCCccccccchhhhccCC---
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRGA---   81 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~---   81 (203)
                      .--+|+|+|..++||||||.+|.+..   ..-+..+.++....+.-+.  .-.++.+|-..|+-.+..+.+..+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34579999999999999999999866   3344455555554443322  235678899988877766666655433   


Q ss_pred             -cEEEEEEECCChhh-HHHHHHHHHHHHhhcC------------------------------------------------
Q 028813           82 -HGIIIVYDVTDQES-FNNVKQWLNEIDRYAS------------------------------------------------  111 (203)
Q Consensus        82 -d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------  111 (203)
                       ..+|++.|+++|.. ++.+..|.+.+..+..                                                
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             37889999999954 4566667665432110                                                


Q ss_pred             -------------CCCcEEEEEeCCCCCC----Ccc-------CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          112 -------------DNVNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       112 -------------~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                                   -++|+++|++|+|...    .-+       .....++.|+.++|..+|.+|+++..|++-+..+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         0589999999999731    111       1223457788899999999999999999999999999


Q ss_pred             HHHHH
Q 028813          168 SIKDR  172 (203)
Q Consensus       168 ~~~~~  172 (203)
                      .++..
T Consensus       288 r~yG~  292 (473)
T KOG3905|consen  288 RSYGF  292 (473)
T ss_pred             HhcCc
Confidence            88644

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.49  E-value=1.2e-12  Score=104.03  Aligned_cols=164  Identities=16%  Similarity=0.296  Sum_probs=114.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC--eEEEEEEEeCCCccccccchhhhccCC---
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRGA---   81 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~---   81 (203)
                      ..-.|+|+|..++|||||+.+|.+..   .+.++.+.++....+.-++  ...++.+|...|...+..+.+..+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            44689999999999999999997654   3345556666655544322  235789999998777777666655432   


Q ss_pred             -cEEEEEEECCChhhH-HHHHHHHHHHHhhcC------------------------------------------------
Q 028813           82 -HGIIIVYDVTDQESF-NNVKQWLNEIDRYAS------------------------------------------------  111 (203)
Q Consensus        82 -d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------------------------  111 (203)
                       -++|+|+|.+.|..+ +.+..|+..+..+..                                                
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             268889999998764 344545444321000                                                


Q ss_pred             --------------CCCcEEEEEeCCCCCC----Ccc-------CCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813          112 --------------DNVNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus       112 --------------~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                                    -++|++||++|+|...    ...       ....-++.++-.||+.+|++|++...+++-++.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                          0489999999999632    111       122335677888999999999999999999999999


Q ss_pred             HHHHHHh
Q 028813          167 ASIKDRM  173 (203)
Q Consensus       167 ~~~~~~~  173 (203)
                      +.++..-
T Consensus       261 h~l~~~~  267 (472)
T PF05783_consen  261 HRLYGFP  267 (472)
T ss_pred             HHhccCC
Confidence            9887553

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.6e-12  Score=97.13  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=99.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC-------CCCCCccccceeeeEEEEEEe-------CCeEEEEEEEeCCCccccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD-------SYIESYISTIGVDFKIRTVEQ-------DGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~   71 (203)
                      +..+++.++|...||||||.++|..-       ..+++.....+.+..-..+.+       .+..+++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            34599999999999999999999731       223343443333333333332       4455789999999997764


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--------
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--------  143 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------  143 (203)
                      .....-.+-.|..++|+|+...-.-+..+-++  +....  -...++|+||.|...+.+ ....+.+.+.+.        
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~q-r~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQ-RASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchh-hhhHHHHHHHHHHHHHHhcC
Confidence            44444456678999999987543222222211  22222  234688889999755432 112222222211        


Q ss_pred             ---CCcEEEeecCCC----CCHHHHHHHHHHHHHH
Q 028813          144 ---GIPFMETSAKDS----TNVEQAFMAMAASIKD  171 (203)
Q Consensus       144 ---~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~  171 (203)
                         +.|++++|+..|    +++.++.+.|...+.+
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence               269999999999    6666666666665553

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.47  E-value=4.5e-13  Score=92.74  Aligned_cols=150  Identities=22%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEE---------------EEEE--------------------e
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI---------------RTVE--------------------Q   52 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~--------------------~   52 (203)
                      .++|.|.|++|||||+|+.+++..-.......-.+.+++.               ..+.                    .
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999999976422111100000001110               0000                    0


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhccCCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           53 DGKTIKLQIWDTAGQERFRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      ......+.|++..|.  .-  ...-+.-.| .-|+|+|++..+...  ++-...+      -..-++|+||.|+......
T Consensus        93 ~~~~~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~  160 (202)
T COG0378          93 DFPDLDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGA  160 (202)
T ss_pred             cCCcCCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCc
Confidence            001145667777771  10  111122234 789999988765310  0000001      1234889999999887777


Q ss_pred             CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          132 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       132 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      +.+...+-+++.+  ++++++|.++|+|++++++|+....
T Consensus       161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            7777777776665  8999999999999999999987653

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.46  E-value=3.7e-13  Score=114.77  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccccceeeeEEEEEEeC--------------
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQD--------------   53 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------   53 (203)
                      +.+..-+|+|+|+.++|||||+++|+...-                +.+.....++......+.+.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            345678999999999999999999985331                01111122222222223331              


Q ss_pred             CeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      +..+.+.++||||+.+|.......+..+|++|+|+|+.++-.......|...    ...++|.++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~----~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH----HHCCCCEEEEEECCccc
Confidence            2357889999999999988888888999999999999876543333333322    23368999999999986

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.46  E-value=4.3e-12  Score=97.49  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCcccc---
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERF---   70 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~---   70 (203)
                      ++|+++|.||+|||||+|+|++........+.++.+.....+.+.+..               ..+.+.|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877554555666656665555554422               25899999994321   


Q ss_pred             ----ccchhhhccCCcEEEEEEECC
Q 028813           71 ----RTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        71 ----~~~~~~~~~~~d~~i~v~d~~   91 (203)
                          .......++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                112223467899999999974

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.46  E-value=1.4e-12  Score=99.36  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=67.7

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~  134 (203)
                      +++.|+||+|...-..   .....+|.++++.+...++.+..+....  +      ...-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~gi--~------E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKGI--M------ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhhh--h------hhhheEEeehhcccchhHHHHHHH
Confidence            6789999999763322   2466799999998765565554433211  1      1223889999998653321  112


Q ss_pred             HHHHHHHH-------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          135 TAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       135 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ++......       +..+++.+|++++.|++++++.|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222221       2258999999999999999999998766

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.46  E-value=8.1e-13  Score=101.50  Aligned_cols=162  Identities=16%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccc--eeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhh-----
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTI--GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY-----   77 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----   77 (203)
                      ...++|+|+|.+|+|||||||+|.+-.... ...++.  .++.....+.... .-.+.+||.||.....-....|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            356899999999999999999997632211 111111  1111122222221 1258999999965433223333     


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-------CCCccCCHH----HHHHHHHH----
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-------TANKVVSYE----TAKAFADE----  142 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~-------~~~~~~~~~----~~~~~~~~----  142 (203)
                      +..-|.+|++.+-.-...--   .....+..   .++|+++|-+|+|.       ..++....+    .+++.+..    
T Consensus       112 ~~~yD~fiii~s~rf~~ndv---~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTENDV---QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GGG-SEEEEEESSS--HHHH---HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             ccccCEEEEEeCCCCchhhH---HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            45668888877643322211   12222322   37899999999996       112222222    22222221    


Q ss_pred             hCC---cEEEeecCCC--CCHHHHHHHHHHHHHHHhc
Q 028813          143 IGI---PFMETSAKDS--TNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       143 ~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~~  174 (203)
                      .++   ++|-+|+++-  .++..+.+.|.+.+...+.
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            233   6899998885  5688899999888876655

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>smart00275 G_alpha G protein alpha subunit

Probab=99.46  E-value=3.3e-12  Score=98.48  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=84.5

Q ss_pred             EEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCc
Q 028813           47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVN  115 (203)
Q Consensus        47 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p  115 (203)
                      ...+.+++  ..+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....+..+ ....-.+.|
T Consensus       176 ~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p  253 (342)
T smart00275      176 ETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS  253 (342)
T ss_pred             EEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc
Confidence            33444544  6789999999999999999999999999999999863          2344443333333 222235789


Q ss_pred             EEEEEeCCCCCCCc---------------cCCHHHHHHHHH-----H------hCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          116 KLLVGNKCDLTANK---------------VVSYETAKAFAD-----E------IGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       116 ~ilv~nK~D~~~~~---------------~~~~~~~~~~~~-----~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++|++||.|+....               ....+....+..     .      ..+..+.++|.+..++..+|+.+.+.+
T Consensus       254 iil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I  333 (342)
T smart00275      254 IILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII  333 (342)
T ss_pred             EEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHH
Confidence            99999999974211               012222222221     1      124567788999999999999988887


Q ss_pred             HHHh
Q 028813          170 KDRM  173 (203)
Q Consensus       170 ~~~~  173 (203)
                      .+..
T Consensus       334 ~~~~  337 (342)
T smart00275      334 LQRN  337 (342)
T ss_pred             HHHH
Confidence            7543

Subunit of G proteins that contains the guanine nucleotide binding site

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.3e-13  Score=99.80  Aligned_cols=164  Identities=18%  Similarity=0.207  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeee------------------EEEEEEeC------CeEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDF------------------KIRTVEQD------GKTIKL   59 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~~------~~~~~~   59 (203)
                      ..++|..+|....|||||.++|.+--.   ..+.....++..                  +...-.+.      .-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            469999999999999999999986321   111111111100                  00000011      112578


Q ss_pred             EEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHH
Q 028813           60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAK  137 (203)
Q Consensus        60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~  137 (203)
                      .|.|.||++-.-....+-..-.|++++|++++.+..-.+..+.+-.+.-..  -+.++++=||+|+...+.  ..+++++
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk  166 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIK  166 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHH
Confidence            999999998654444444555799999999997655444455554454433  245788899999976443  3456666


Q ss_pred             HHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          138 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       138 ~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      +|.+.-   +.|++++||.++.|++.+++.|.+.+..-
T Consensus       167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            665432   57999999999999999999998887643

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.44  E-value=1.5e-12  Score=109.80  Aligned_cols=117  Identities=21%  Similarity=0.241  Sum_probs=78.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccccceeeeEEEEE--EeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--E--------------SYISTIGVDFKIRTV--EQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~   67 (203)
                      ++.-+|+++|+.++|||||+.+|+...-.  .              +.....++......+  .+++....+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            45668999999999999999999853211  0              001111222222222  23445688999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      ..|.......+..+|++|+|+|+...-.......|.... .   .+.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-R---ERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-H---cCCCeEEEEECchhh
Confidence            988777888889999999999988754332222233222 1   246789999999975

>PTZ00416 elongation factor 2; Provisional

Probab=99.44  E-value=6.6e-13  Score=113.07  Aligned_cols=117  Identities=16%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccccceeeeEEEEEEeC--------CeEEEEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI----------------ESYISTIGVDFKIRTVEQD--------GKTIKLQI   61 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i   61 (203)
                      +..-+|+|+|+.++|||||+++|+...-.                .+.....++......+.+.        +....+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            55669999999999999999999853210                0111112222222233332        22577999


Q ss_pred             EeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      +||||+..|.......+..+|++|+|+|+.++-......-| ..+   ...+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~---~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQA---LQERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHH---HHcCCCEEEEEEChhhh
Confidence            99999998877788888999999999999876443322222 222   23368999999999985

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.44  E-value=2.4e-12  Score=92.87  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------Cccc----cceeeeEEEEEE------------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--E----------SYIS----TIGVDFKIRTVE------------------   51 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~--~----------~~~~----~~~~~~~~~~~~------------------   51 (203)
                      .....|+|+|+.|+|||||+++++.....  .          ....    ..+..  ...+.                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence            35678999999999999999998753110  0          0000    00000  00000                  


Q ss_pred             eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      .......+.++|+.|.-...   ..+....+..+.++|+.+.+...  ......+      +.|.++++||+|+.+....
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~------~~a~iiv~NK~Dl~~~~~~  166 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYPGMF------KEADLIVINKADLAEAVGF  166 (207)
T ss_pred             hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhHhHH------hhCCEEEEEHHHccccchh
Confidence            00012467788888721111   11112345566788877654311  1111111      4678999999999653322


Q ss_pred             CHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHHHH
Q 028813          132 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       132 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      ......+...+.+  ++++++|++++.|++++++++.+.
T Consensus       167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            2333444444433  899999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.4e-12  Score=101.87  Aligned_cols=152  Identities=21%  Similarity=0.259  Sum_probs=102.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC-------------------------------CCCCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD-------------------------------SYIESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...+.++++|...+|||||+.+|+..                               ....+...+.+++.....+.  -
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe--s  252 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE--S  252 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--c
Confidence            36789999999999999999998642                               01223334444444444444  4


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      ....+++.|+||+..|-.....-...+|+.|+|+|++...   .|   .+.++....++.+.  -..+++++||+|+.+=
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW  330 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence            4578999999999999888888888999999999987431   11   22233333344433  2457889999999765


Q ss_pred             ccCCHHHHHH----HH-HHhC-----CcEEEeecCCCCCHHHH
Q 028813          129 KVVSYETAKA----FA-DEIG-----IPFMETSAKDSTNVEQA  161 (203)
Q Consensus       129 ~~~~~~~~~~----~~-~~~~-----~~~~~~Sa~~~~~i~~~  161 (203)
                      .+..++++..    |. ...|     +.+++||++.|+|+-..
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            4444444432    22 2233     47999999999986543

>cd01882 BMS1 Bms1

Probab=99.43  E-value=3.4e-12  Score=93.15  Aligned_cols=138  Identities=17%  Similarity=0.183  Sum_probs=80.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ....|+++|.+|+|||||++.+.+...........+. +   .+ ......++.++|+||.-  . ......+.+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEEEE
Confidence            4467999999999999999999864321111111110 1   11 11234678899999853  2 23334688999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCccCCH---HHHHH-HHHH--hCCcEEEeecCCCC
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY---ETAKA-FADE--IGIPFMETSAKDST  156 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~  156 (203)
                      ++|+........ ...+..+..   .+.|. ++|+||+|+.+......   ..++. +..+  .+.+++.+||+++-
T Consensus       110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            999976443222 222222322   25674 55999999864322111   12222 2211  23689999999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK13768 GTPase; Provisional

Probab=99.43  E-value=2e-12  Score=95.91  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             EEEEEeCCCcccc---ccchhhhcc---C--CcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           58 KLQIWDTAGQERF---RTITSSYYR---G--AHGIIIVYDVTDQESFNNV--KQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        58 ~~~i~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ++.+||+||..+.   ...+..+++   .  .+++++++|+.........  ..|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6899999997653   333333322   2  7899999999654332222  2222222222 23689999999999865


Q ss_pred             CccCC--HHHHH------------------------HHHHHhC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          128 NKVVS--YETAK------------------------AFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       128 ~~~~~--~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ..+..  ...+.                        +.....+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            43210  00000                        1112233  57899999999999999999988763

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.39  E-value=9e-13  Score=95.56  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCccccc------cchhhhcc--CCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           57 IKLQIWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      +++.++||||+-+..      .++...+.  .--++++++|...   +.+|  +..++=.-..+.....|.++++||.|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecccc
Confidence            467899999965321      11111111  2346788888543   3332  112111112233447999999999999


Q ss_pred             CCCccC-----CHHHHHHHHH---------------------HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          126 TANKVV-----SYETAKAFAD---------------------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       126 ~~~~~~-----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      .+..-.     .++..++-..                     -.++..+.||+.+|.|++++|..+-..+.++..
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            764210     0111111000                     014678999999999999999999888776654

>cd01900 YchF YchF subfamily

Probab=99.38  E-value=6.6e-12  Score=93.47  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=58.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCcccc-----
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERF-----   70 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~-----   70 (203)
                      |+++|.||||||||+|+|++........+.++.+.....+.+.+..               ..+.++|+||...-     
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999987765555666666666666665432               25899999994321     


Q ss_pred             --ccchhhhccCCcEEEEEEECC
Q 028813           71 --RTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        71 --~~~~~~~~~~~d~~i~v~d~~   91 (203)
                        .......++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence              111223457899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.38  E-value=2.8e-11  Score=95.92  Aligned_cols=160  Identities=21%  Similarity=0.314  Sum_probs=115.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+++.++|+.++|||.|++.|+++.+..+...+....+....+...+....+.+.|.+-. ...-....- ..+|++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            367899999999999999999999998887766666665666666666677677778787754 111111111 668999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc-EEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~  163 (203)
                      +++||.+++.+++.....++.-...  ...|+++|++|+|+.+..+...-.-.+++..++++ .+..|.+.... .++|.
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            9999999999998887766655433  47899999999999765432222227788889973 56667665333 88888


Q ss_pred             HHHHHH
Q 028813          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      .|..+.
T Consensus       577 kL~~~A  582 (625)
T KOG1707|consen  577 KLATMA  582 (625)
T ss_pred             HHHHhh
Confidence            877654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.38  E-value=5.6e-13  Score=97.68  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             EEEEEeCCCccccccchhhhc--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      .+.++||||+-++...+....        ...-++++++|+..... ...+..++..+......+.|.+.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            588999999887654443332        33457888999764322 122233333333222236899999999999762


Q ss_pred             cc-------CC------------HHHHHHHHHH---hC-C-cEEEeecCCCCCHHHHHHHHHHHH
Q 028813          129 KV-------VS------------YETAKAFADE---IG-I-PFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       129 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ..       ..            .....+++.-   ++ . .++.+|+.+++|+.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            20       00            0001111111   12 3 799999999999999999876543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.37  E-value=6.3e-11  Score=91.44  Aligned_cols=153  Identities=12%  Similarity=0.175  Sum_probs=90.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCcccc---ceeeeEE-----EEEEe-CCeEEEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD----SYI------------ESYIST---IGVDFKI-----RTVEQ-DGKTIKLQI   61 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~~-~~~~~~~~i   61 (203)
                      -.+-|+|+|+.++||||||++|.+.    ...            .+..++   ++++...     ..+.. ++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4578999999999999999999876    221            111222   1111111     12222 344578899


Q ss_pred             EeCCCccc--------ccc------c---------------hhhhcc-CCcEEEEEE-ECC----ChhhHHHH-HHHHHH
Q 028813           62 WDTAGQER--------FRT------I---------------TSSYYR-GAHGIIIVY-DVT----DQESFNNV-KQWLNE  105 (203)
Q Consensus        62 ~D~~g~~~--------~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~  105 (203)
                      +||+|...        -..      -               ....+. .+|..|+|. |.+    .++.+... ..++.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999321        111      0               222234 789888888 764    11223222 345555


Q ss_pred             HHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC--CCHHHHHHH
Q 028813          106 IDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS--TNVEQAFMA  164 (203)
Q Consensus       106 i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~  164 (203)
                      ++   ..++|+++++||.|-....  ..+...++..+++++++.+|+.+-  ..+..+++.
T Consensus       176 Lk---~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~  231 (492)
T TIGR02836       176 LK---ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE  231 (492)
T ss_pred             HH---hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence            54   3479999999999943222  234445667778999888887653  445555444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.37  E-value=1.5e-11  Score=85.80  Aligned_cols=63  Identities=24%  Similarity=0.302  Sum_probs=43.8

Q ss_pred             EEEEEeCCCccc----cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813           58 KLQIWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC  123 (203)
Q Consensus        58 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  123 (203)
                      .+.|+|+||...    ....+..++..+|++|+|.+++....-.....+.+.....   ....++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            378999999643    3355777889999999999999866544445555444332   34488899984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.36  E-value=1.7e-11  Score=81.07  Aligned_cols=114  Identities=30%  Similarity=0.353  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +........+.++.++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997666543332 2222                           111223356778999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      ++..+..+++.+  |...+........|.++++||.|+.+......+..        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999888665  77766555555688999999999844333332222        235567889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=6.6e-12  Score=101.85  Aligned_cols=165  Identities=17%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC------------Ce----EEEEEEEeCCCcccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD------------GK----TIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~~~   70 (203)
                      +..=++|+|+..+|||-|+..+.+.+.......+.+..+....+...            ++    --.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            45568999999999999999998866544433333322222222111            10    013688999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-------------CCHHHHH
Q 028813           71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-------------VSYETAK  137 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-------------~~~~~~~  137 (203)
                      ..+.......+|.+|+|+|+..+-..+.    +..+..+...+.|+|+.+||+|..-...             ...+...
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            9999889999999999999976533222    2233334445789999999999742110             0011111


Q ss_pred             HHHHHh----------C---------------CcEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          138 AFADEI----------G---------------IPFMETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       138 ~~~~~~----------~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      +|..++          |               +.++++||..|+||.+++.+|+++....+.+
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            111111          1               3578999999999999999999887666654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.32  E-value=3.9e-11  Score=89.99  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=76.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---   73 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---   73 (203)
                      ..++|+|+|.+|+|||||||.|++.......          ..+.........+.-++..+.+.++||||.......   
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999976543221          123334444455556777889999999993211000   


Q ss_pred             hh-----------h-------------hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           74 TS-----------S-------------YYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        74 ~~-----------~-------------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      |.           .             .=..+|+++|+++.+... .-..+ +.+..+   .. ..++|-|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~-~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL---SK-RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH---TT-TSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh---cc-cccEEeEEecccccCH
Confidence            00           0             013578999999986532 11111 223333   22 4789999999998654


Q ss_pred             ccC--CHHHHHHHHHHhCCcEEEeec
Q 028813          129 KVV--SYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      .++  ....+..-...+++.+|....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            332  122334444567777776443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.31  E-value=4.8e-11  Score=90.77  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH-
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE-  134 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~-  134 (203)
                      .+++.|+||+|....   .......+|.++++.+....+.   +......+     ..+|.++++||+|+......... 
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            367899999985422   2235667888888865443333   22222222     14678999999998654321100 


Q ss_pred             -----HHHHHHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          135 -----TAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       135 -----~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                           ....+...   +..+++.+|++++.|+++++++|.+.+.
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 00111111   2246999999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.30  E-value=4.2e-11  Score=88.23  Aligned_cols=157  Identities=22%  Similarity=0.196  Sum_probs=95.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC-----------CCCCccccce---------------eeeEEEEEE-------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-----------YIESYISTIG---------------VDFKIRTVE-------   51 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~-------   51 (203)
                      ..+...|.|.|.||+|||||+..|...-           .+++...+-+               ...+...+.       
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG  127 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG  127 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence            3456789999999999999999985311           0111111100               011111110       


Q ss_pred             -----------eCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028813           52 -----------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG  120 (203)
Q Consensus        52 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~  120 (203)
                                 ++...+++.|++|.|..+...   ....-+|.++++.-..-.+.++.++.-+-++.        -++|+
T Consensus       128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vI  196 (323)
T COG1703         128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVI  196 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeE
Confidence                       111225788999988654322   24556899999988777777777766554443        37899


Q ss_pred             eCCCCCCCccCCHHHHHHH------HHHhC--CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          121 NKCDLTANKVVSYETAKAF------ADEIG--IPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       121 nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      ||.|....+....+....+      ....+  .+++.+||.+|+|++++++.+.+...-.
T Consensus       197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            9999644321111111111      11122  4899999999999999999988766433

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=4.7e-11  Score=92.06  Aligned_cols=155  Identities=16%  Similarity=0.128  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC---CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      -|+..|.-..|||||++++.+...   +.......+.+........++  ..+.|+|.||+.++-.....-+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            477889999999999999997654   333344455555544444444  588999999999887767777788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH---HhCCcEEEeecCCCCCHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD---EIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |+++++.-..+. .+.+..+..+..  ...++|+||+|..++..+ .+.++++..   ..++++|.+|+.+|+|++++.+
T Consensus        80 vV~~deGl~~qt-gEhL~iLdllgi--~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQT-GEHLLILDLLGI--KNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhh-HHHHHHHHhcCC--CceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999975433222 222333433321  345899999998765321 122222222   2246889999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      .|.+...
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999885

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.29  E-value=1.4e-10  Score=88.25  Aligned_cols=130  Identities=22%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             eeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh-------HHHHHHHHHHHHhh----c
Q 028813           42 GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRY----A  110 (203)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~i~~~----~  110 (203)
                      +..+....+.+.+  ..+.++|.+|+..-+.-|.+.+.+++++|||+++++-+.       ...+.+-+..+...    +
T Consensus       182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            3345556666666  788899999999888889999999999999999885432       23333333333322    3


Q ss_pred             CCCCcEEEEEeCCCCCCCc--------------c-CCHHHHHHHH-----HHh-----CCcEEEeecCCCCCHHHHHHHH
Q 028813          111 SDNVNKLLVGNKCDLTANK--------------V-VSYETAKAFA-----DEI-----GIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus       111 ~~~~p~ilv~nK~D~~~~~--------------~-~~~~~~~~~~-----~~~-----~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      -...+++|++||.|+....              . ...+....+.     ..+     .+.+..+.|.+..+|+.+|..+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            3478999999999984321              0 1222222221     111     2456677899999999999999


Q ss_pred             HHHHHHHh
Q 028813          166 AASIKDRM  173 (203)
Q Consensus       166 ~~~~~~~~  173 (203)
                      .+.+....
T Consensus       340 ~d~Ii~~n  347 (354)
T KOG0082|consen  340 TDTIIQNN  347 (354)
T ss_pred             HHHHHHHH
Confidence            99887654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=5.7e-11  Score=98.42  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=86.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ++.-+|.|+|+..+|||||..+++...-.                  .+.....++.....++.+.+ ++.+.++|||||
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            46778999999999999999999742210                  11112233333334444443 589999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      -+|.......++-.|++|+|+|+...-..+.-..|.+..    ..+.|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccccc
Confidence            999888888899999999999998865544444455444    337899999999998654

>smart00053 DYNc Dynamin, GTPase

Probab=99.27  E-value=1e-10  Score=85.55  Aligned_cols=69  Identities=13%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             EEEEEEeCCCcccc-------------ccchhhhcc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813           57 IKLQIWDTAGQERF-------------RTITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK  122 (203)
Q Consensus        57 ~~~~i~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK  122 (203)
                      ..++++|+||....             ..+...+++ ..+++++|+|+...-.-.......   +.+.+.+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia---~~ld~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA---KEVDPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH---HHHHHcCCcEEEEEEC
Confidence            46889999996421             223444566 446888999886532222222222   2333447899999999


Q ss_pred             CCCCCC
Q 028813          123 CDLTAN  128 (203)
Q Consensus       123 ~D~~~~  128 (203)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.26  E-value=4.8e-12  Score=91.82  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC------CC-----CCCcccc---------------ceeeeEEEEEEeCC-----
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD------SY-----IESYIST---------------IGVDFKIRTVEQDG-----   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~------~~-----~~~~~~~---------------~~~~~~~~~~~~~~-----   54 (203)
                      .+.+.|.|.|+||+|||||++.|...      ..     +++...+               .....+...+-..+     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            35689999999999999999998531      10     1111110               01112222221111     


Q ss_pred             -------------eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 028813           55 -------------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN  121 (203)
Q Consensus        55 -------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n  121 (203)
                                   ..+++.|++|.|..+-.   .....-+|.+++|....-.+.++.++.-+-++        .-++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence                         11568888998754332   22456699999999988777766665544444        2388999


Q ss_pred             CCCCCCCccCCHHHHHHHHHH-------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          122 KCDLTANKVVSYETAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       122 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      |.|....+.. ..+++.....       +..|++.+||.++.|++++++.|.+...
T Consensus       176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            9995433221 1222222221       1248999999999999999999876443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.26  E-value=3.1e-11  Score=89.93  Aligned_cols=55  Identities=24%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             CcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          114 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       114 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      .+-++|+||+|+........+...+..+..  .++++.+|+++|+|++++.+||...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            566999999999653222233333333333  4789999999999999999999764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.26  E-value=2.5e-10  Score=92.84  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=72.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cc---h
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TI---T   74 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~   74 (203)
                      +..++|+++|.+|+||||++|.+++....... ....+..........++  ..+.++||||.....       .+   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            56789999999999999999999987643322 11222222222233444  678999999965421       11   1


Q ss_pred             hhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCC
Q 028813           75 SSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTAN  128 (203)
Q Consensus        75 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~  128 (203)
                      ..++.  ..|+++||..++.......-..++..+......  -...|||+|+.|...+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            11223  479999998876332211112334444333221  1347999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.25  E-value=5.7e-10  Score=80.29  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRG   80 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   80 (203)
                      --+++++|.|++|||||+..+............++.+.....+.+++  ..+++.|.||.-.-       ..+.....+-
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            36899999999999999999987655444444556677778888888  67888899994321       2334455678


Q ss_pred             CcEEEEEEECCChhhH-HHHHHHHHHH
Q 028813           81 AHGIIIVYDVTDQESF-NNVKQWLNEI  106 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~-~~~~~~~~~i  106 (203)
                      +|.++.|.|++..+.- +.++..++.+
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            9999999999865432 2334444444

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.25  E-value=1.3e-11  Score=87.38  Aligned_cols=147  Identities=22%  Similarity=0.338  Sum_probs=91.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhccCC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYRGA   81 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   81 (203)
                      .-||+++|.+||||||+-..+...... ....++.++++.-.+..+-| ...+.+||++|++.+     .......+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999987766643321 22233444455544444432 257889999998843     33455678999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCcc--CCHH----HHHHHHHHhCCcEEEeecC
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKV--VSYE----TAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~--~~~~----~~~~~~~~~~~~~~~~Sa~  153 (203)
                      +++++|||+...+--..+..+...++...  .+...+.+.++|+|+.....  ....    .+..+....++.++++|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999987765445544444443332  23466888899999965432  1112    2222233334567777665


Q ss_pred             CC
Q 028813          154 DS  155 (203)
Q Consensus       154 ~~  155 (203)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            43

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.7e-10  Score=85.91  Aligned_cols=84  Identities=19%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC----------------eEEEEEEEeCCCc----
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG----------------KTIKLQIWDTAGQ----   67 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~----   67 (203)
                      .+++.|||.||+|||||+|+++.........|..+++.......+..                ....+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998776545556666665555443321                1246889999982    


Q ss_pred             ---cccccchhhhccCCcEEEEEEECC
Q 028813           68 ---ERFRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        68 ---~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                         +......-.-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               233444555678999999999965

>cd01855 YqeH YqeH

Probab=99.25  E-value=5.9e-11  Score=84.58  Aligned_cols=110  Identities=24%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~  144 (203)
                      +...+..+++.+|++++|+|+.++..     .|...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            46667788999999999999987642     122222222 23589999999999865332 233333333     2233


Q ss_pred             C---cEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCC
Q 028813          145 I---PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS  198 (203)
Q Consensus       145 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      .   .++.+||+++.|+++++++|.+.+..            +..+.+.+.++.+||
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~------------~~~~~~~G~~nvGKS  141 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAKK------------GGDVYVVGATNVGKS  141 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhhc------------CCcEEEEcCCCCCHH
Confidence            3   68999999999999999999887741            223555566665554

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2e-10  Score=88.55  Aligned_cols=134  Identities=18%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCC--------------CCC----ccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD--DSY--------------IES----YISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~--~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      +.-..+|+-+|.+|||||-.+|+.  +..              ..+    .+.--++.+.+..+.++.....+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            334578999999999999999862  110              000    011123344444444444448899999999


Q ss_pred             ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCc
Q 028813           67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP  146 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  146 (203)
                      ++.|..-....+..+|..+.|+|+...-.-    +.+..+.-....++|++=++||+|....+  ..+.+.++...+++.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~----qT~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i~  164 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEP----QTLKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGIQ  164 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccH----HHHHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCcc
Confidence            999988788888899999999999865332    22233333344589999999999974433  345566666666543

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.22  E-value=2e-11  Score=90.64  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   76 (203)
                      ....-|.+||-.|+||||||++|+.........-..+.+.+.+....+.. ..+.+.||.|.-+         |.. .-.
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence            34457999999999999999999976554444434444444444443322 3677889999432         222 222


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN----KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ....+|.++.|.|++.|+.-++....+..++...-...|    .+=|-||.|.......        ...++  -+.+|+
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isa  323 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISA  323 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--cccccc
Confidence            346789999999999987544444444444444322223    3445678876443211        11233  567899


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhc
Q 028813          153 KDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ++|+|++++...+-..+..-..
T Consensus       324 ltgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  324 LTGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             ccCccHHHHHHHHHHHhhhhhe
Confidence            9999999999999888765544

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.1e-10  Score=83.38  Aligned_cols=143  Identities=17%  Similarity=0.177  Sum_probs=96.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD----------------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|..+|..+.|||||..++..-                ..+.+.  ..++++...++.++-.+..+...|+||+..
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk--~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEK--ARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHh--hcCceeccceeEEecCCceEEeccCCChHH
Confidence            56799999999999999999887531                112222  235556666666655557888899999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhCC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIGI  145 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~~  145 (203)
                      |-.....-..++|+.|+|+++.+..-.+. ++.+...+.   -+.| +++++||+|+.++.++   -..+.+++...+++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            87666666778899999999998543222 222222222   2566 6667799999875542   22345666777764


Q ss_pred             -----cEEEeecCC
Q 028813          146 -----PFMETSAKD  154 (203)
Q Consensus       146 -----~~~~~Sa~~  154 (203)
                           |++.-|++.
T Consensus       164 ~gd~~Pii~gSal~  177 (394)
T COG0050         164 PGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCcceeechhhh
Confidence                 677777765

>cd01859 MJ1464 MJ1464

Probab=99.18  E-value=7e-11  Score=81.50  Aligned_cols=94  Identities=21%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEe
Q 028813           71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                      +.++++...++|++++|+|+.++..... ..+...+   ...++|+++|+||+|+.+....  .....+....+.+++.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV---LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH---HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence            3456777888999999999987643221 1111112   2236899999999998543211  11222333456789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028813          151 SAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      |++++.|++++++.|.+.+.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          77 SAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EccccccHHHHHHHHHHHHh
Confidence            99999999999999988775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=5e-10  Score=90.28  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=84.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------cceeeeEEEEEE---eCCeEEEEEEEeC
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-----------------TIGVDFKIRTVE---QDGKTIKLQIWDT   64 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~   64 (203)
                      .+...+++++|+-++|||+|+..|.....+.-...                 ..++.....++.   ..++.+-+.++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            46788999999999999999999986554332111                 112222222222   3556778999999


Q ss_pred             CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      ||+-.|.......+..+|++++|+|+.+.-.+..-+    .++.......|+++|+||+|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHH
Confidence            999999888888899999999999998876543322    233334457899999999996

>PRK12289 GTPase RsgA; Reviewed

Probab=99.11  E-value=3e-10  Score=87.67  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             chhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      +.+..+.++|.+++|+|+.++. ....+..|+..+.   ..++|+++|+||+|+......  ..........+++++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3444578999999999998775 4445566765552   236899999999999643221  222333346688999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~  168 (203)
                      |+++.|+++++++|...
T Consensus       157 A~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        157 VETGIGLEALLEQLRNK  173 (352)
T ss_pred             cCCCCCHHHHhhhhccc
Confidence            99999999999998653

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.7e-10  Score=84.83  Aligned_cols=124  Identities=19%  Similarity=0.276  Sum_probs=80.1

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ccceeeeEEEEEEe------CCeE--------------------
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQ------DGKT--------------------   56 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~--------------------   56 (203)
                      ..+...-|+++|.-+.||||||+.|+...++.... +-.+.+.....+.-      ++..                    
T Consensus        54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl  133 (532)
T KOG1954|consen   54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL  133 (532)
T ss_pred             ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence            34567789999999999999999999988764432 11122222222221      1110                    


Q ss_pred             -------------EEEEEEeCCCccc-----------cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC
Q 028813           57 -------------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD  112 (203)
Q Consensus        57 -------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  112 (203)
                                   -.++++||||.-+           |.....-|...+|.++++||+...+--.+....+..++.+   
T Consensus       134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---  210 (532)
T KOG1954|consen  134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---  210 (532)
T ss_pred             HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---
Confidence                         0478999999432           2333344678999999999987665545555555555433   


Q ss_pred             CCcEEEEEeCCCCCCCcc
Q 028813          113 NVNKLLVGNKCDLTANKV  130 (203)
Q Consensus       113 ~~p~ilv~nK~D~~~~~~  130 (203)
                      .-.+-+|+||+|..+..+
T Consensus       211 EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             cceeEEEeccccccCHHH
Confidence            345778899999876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.08  E-value=6e-10  Score=87.99  Aligned_cols=161  Identities=25%  Similarity=0.377  Sum_probs=119.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .++|+.|||..++|||.|+.+++.+.+.+...+..  ..+.+++..+++..-+.+.|.+|..     ...|...+|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            46899999999999999999999888765544433  3566777778888888889998832     3346677999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCC--CccCCHHHHHH-HHHHhCCcEEEeecCCCCCHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA--NKVVSYETAKA-FADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ||.+.+..+++.+..+...+.... ....|.++++++.-...  .+.+..+...+ .++...+.+|+.++.+|.++...|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            999999999998887776664332 34677888887654322  23333344444 344556899999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028813          163 MAMAASIKDRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      ..+..++...++
T Consensus       182 ~~~~~k~i~~~~  193 (749)
T KOG0705|consen  182 QEVAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHHHh
Confidence            999988765543

>PRK12288 GTPase RsgA; Reviewed

Probab=99.06  E-value=1e-09  Score=84.74  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      ..++|.+++|+++....++..+..|+..+..   .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4568999999999888888888888875542   36899999999999654321 1122223334567899999999999


Q ss_pred             CHHHHHHHHHH
Q 028813          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 ~i~~~~~~l~~  167 (203)
                      |+++++++|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999999865

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=4.3e-09  Score=75.32  Aligned_cols=146  Identities=19%  Similarity=0.281  Sum_probs=88.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---ccch
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE---------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---RTIT   74 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~~   74 (203)
                      ..++|+|||.+|.|||||+|+|.......         ....|+.+......+.-++...+++++||||...+   ...|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            56899999999999999999998644322         12234444455566667777889999999994332   1111


Q ss_pred             hh-----------hc--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 028813           75 SS-----------YY--------------RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA-  127 (203)
Q Consensus        75 ~~-----------~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~-  127 (203)
                      .-           |+              ..+++++|.+..+.-. +..+ .+++..+...    .-++-|+-|+|... 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~v----vNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTEV----VNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence            11           11              2467888888876422 1111 1222333222    34677788999643 


Q ss_pred             -CccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813          128 -NKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus       128 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                       ++....+.+++-...+++.+++--+.+-+.
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~  230 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDL  230 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccch
Confidence             233333445556667888888776665433

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.04  E-value=7.3e-09  Score=78.57  Aligned_cols=139  Identities=19%  Similarity=0.345  Sum_probs=85.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--   73 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--   73 (203)
                      ...+.|+++|+.|+|||||+|.|++......          ..++..+..+...+.-++-.+.+.++||||...+-..  
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4568999999999999999999997643222          2244445556666666777889999999994322111  


Q ss_pred             -h-----------hhhc--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           74 -T-----------SSYY--------------RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        74 -~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                       |           ..++              ..+++++|++..+.- .+..+ ...+..+..    .+-+|-|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence             1           1111              347889999886532 22222 112222322    35577888999986


Q ss_pred             CCccC--CHHHHHHHHHHhCCcEEE
Q 028813          127 ANKVV--SYETAKAFADEIGIPFME  149 (203)
Q Consensus       127 ~~~~~--~~~~~~~~~~~~~~~~~~  149 (203)
                      ..++.  -.+.+.+....+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            54332  223345555666777774

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.8e-09  Score=84.90  Aligned_cols=138  Identities=16%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+=++|+|+||+||||||+.|..+-......     ++......+.++..+++++++|.+  ... .....+-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~-----~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTID-----EIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhh-----ccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence            456788899999999999999988643221111     111112234567789999999943  222 344567799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCCHHHHH-----HHHHHh-CCcEEEeecCCC
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSYETAK-----AFADEI-GIPFMETSAKDS  155 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~-----~~~~~~-~~~~~~~Sa~~~  155 (203)
                      +++|.+-...++.+ ++++.+..+   +.| ++-|+|+.|+..........-+     .|..-+ |+.+|.+|...+
T Consensus       139 LlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         139 LLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             EEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            99999987766665 345555444   444 7888999999654432222222     222222 578888887664

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.02  E-value=1.2e-08  Score=80.60  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             eeeEEEEEEe-CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh----------hHHHHHHHHHHH-Hhhc
Q 028813           43 VDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE----------SFNNVKQWLNEI-DRYA  110 (203)
Q Consensus        43 ~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i-~~~~  110 (203)
                      ..+....+.+ .+  ..+.++|++|+...+..|..++.+++++|||+++++-+          .+.+.......+ ....
T Consensus       223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~  300 (389)
T PF00503_consen  223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW  300 (389)
T ss_dssp             SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence            3344555666 55  78899999999988899999999999999999976422          122223333333 2223


Q ss_pred             CCCCcEEEEEeCCCCCCC-----c-----------c--CCHHHHHHHHHHh------------CCcEEEeecCCCCCHHH
Q 028813          111 SDNVNKLLVGNKCDLTAN-----K-----------V--VSYETAKAFADEI------------GIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       111 ~~~~p~ilv~nK~D~~~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~  160 (203)
                      -.+.|++|++||.|+...     .           .  -..+....+....            .+.+..++|.+...+..
T Consensus       301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~  380 (389)
T PF00503_consen  301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK  380 (389)
T ss_dssp             GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred             cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence            347899999999996211     0           0  2233333333211            12456788888888888


Q ss_pred             HHHHHHHHH
Q 028813          161 AFMAMAASI  169 (203)
Q Consensus       161 ~~~~l~~~~  169 (203)
                      +|+.+.+.+
T Consensus       381 v~~~v~~~i  389 (389)
T PF00503_consen  381 VFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhcCcC
Confidence            888877643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.00  E-value=2.4e-09  Score=80.95  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=67.3

Q ss_pred             hhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           75 SSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+...  ......+....+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999887 77788888876643   3689999999999965421  112233334567899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMAA  167 (203)
Q Consensus       154 ~~~~i~~~~~~l~~  167 (203)
                      ++.|+++++.+|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.7e-08  Score=77.02  Aligned_cols=145  Identities=18%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-----   71 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----   71 (203)
                      -..+.++++|..|.|||||||.|+...+...         ...+.....+...+..++-.++++++||||....-     
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3458999999999999999999987643221         22244445555556667778899999999933210     


Q ss_pred             --c-------chhhh-----------c--cCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           72 --T-------ITSSY-----------Y--RGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        72 --~-------~~~~~-----------~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                        .       ....+           +  ..+++++|.+..+.- .+..+. ..+..+.    ..+.+|-|+.|+|....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTK  173 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCH
Confidence              0       01111           1  267899999986542 111111 1222222    24667888899998654


Q ss_pred             ccC--CHHHHHHHHHHhCCcEEEeecCCC
Q 028813          129 KVV--SYETAKAFADEIGIPFMETSAKDS  155 (203)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .++  ....+.+....+++++|.......
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            432  223345555667788776655544

>cd01858 NGP_1 NGP-1

Probab=98.99  E-value=1.7e-09  Score=74.61  Aligned_cols=111  Identities=20%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             hccCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813           77 YYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      .+..+|++++|+|+.++..  ...+..++   ... ..++|+++|+||+|+.+.... ......+...+....+.+|++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999988632  22333333   222 335899999999999643221 1122222222223357899999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          155 STNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      +.|+++++++|.+.+....       ......+.+.+.++.+||+
T Consensus        80 ~~~~~~L~~~l~~~~~~~~-------~~~~~~v~~~G~~nvGKSt  117 (157)
T cd01858          80 PFGKGSLIQLLRQFSKLHS-------DKKQISVGFIGYPNVGKSS  117 (157)
T ss_pred             cccHHHHHHHHHHHHhhhc-------cccceEEEEEeCCCCChHH
Confidence            9999999999977654211       1123456677888877764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.99  E-value=1.9e-09  Score=74.28  Aligned_cols=114  Identities=19%  Similarity=0.155  Sum_probs=69.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+...... .+....+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988754321  12221 1223346899999999998543211 11112232233456899999999999999


Q ss_pred             HHHHHHHHHHHhccCC-CCCCCCCCcccccCCCCCCCCC
Q 028813          162 FMAMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      ++.+.+...+...... .........+.+.+.++.+||.
T Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst  115 (155)
T cd01849          77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS  115 (155)
T ss_pred             HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence            9999876543221111 1113345667777888887763

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.98  E-value=2.6e-09  Score=83.28  Aligned_cols=95  Identities=26%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             ccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH----HHHHH
Q 028813           67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADE  142 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~----~~~~~  142 (203)
                      .+.|..+...+...++++++|+|+.+...     .|...+..... +.|+++|+||+|+.... ...+.+.    +++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            45677777888889999999999976542     34444444332 57999999999986532 2233333    33556


Q ss_pred             hCC---cEEEeecCCCCCHHHHHHHHHHH
Q 028813          143 IGI---PFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       143 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01856 YlqF YlqF

Probab=98.95  E-value=3.7e-09  Score=74.02  Aligned_cols=119  Identities=20%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      .....+.++|++++|+|+.++..... ......+     .++|+++|+||+|+.+....  ....++....+..++.+|+
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa   83 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNA   83 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEEC
Confidence            34556789999999999987643211 1111111     24789999999998543211  1121222333456899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          153 KDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      +++.|++++.+.|...+............+....+-..+.++.+||.
T Consensus        84 ~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst  130 (171)
T cd01856          84 KSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST  130 (171)
T ss_pred             CCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence            99999999999999887532222222233344566777777777653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.95  E-value=1.8e-09  Score=78.73  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=91.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-cceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI   73 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   73 (203)
                      .+..++++++|.+|+|||||++-++.......... ..+.+.....+.+..   .+.+.|.||-.          .+...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            45678999999999999999999987654332222 334344445555554   77888999911          22333


Q ss_pred             hhhhccCC---cEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----CC------HHHHH
Q 028813           74 TSSYYRGA---HGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-----VS------YETAK  137 (203)
Q Consensus        74 ~~~~~~~~---d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~-----~~------~~~~~  137 (203)
                      ...++.+-   -.+.+++|++-+-  .-....+|+      ...++|..+|+||+|......     ..      +..+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~------ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL------GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH------hhcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            33343222   2456667765432  111222333      444899999999999742211     11      11111


Q ss_pred             HHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          138 AFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       138 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ........|.+.+|+.++.|++++.-.+.+
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhh
Confidence            111222356778999999999988766544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.94  E-value=4.5e-09  Score=79.90  Aligned_cols=86  Identities=17%  Similarity=0.263  Sum_probs=63.4

Q ss_pred             hccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .+.++|.+++|+|+.++..... +..|+..+..   .++|+++|+||+|+.+... ............+++++.+||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765443 4667665543   3689999999999963321 122234444566889999999999


Q ss_pred             CCHHHHHHHHH
Q 028813          156 TNVEQAFMAMA  166 (203)
Q Consensus       156 ~~i~~~~~~l~  166 (203)
                      .|++++++.|.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998864

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.92  E-value=2.7e-08  Score=75.90  Aligned_cols=161  Identities=16%  Similarity=0.104  Sum_probs=97.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------cccceeeeEEEEEEeCC----------------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------------ISTIGVDFKIRTVEQDG----------------   54 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----------------   54 (203)
                      .+..+.+.+.|..++|||||.-.|..+..+...              ....+-+.+...+-+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            457789999999999999999888754432211              11112222222222221                


Q ss_pred             -----eEEEEEEEeCCCccccccc--hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           55 -----KTIKLQIWDTAGQERFRTI--TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        55 -----~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                           .+.-+.|.|+.|++.|...  ...+-+..|..++++.+++.-+... ++.+-   -......|+++++||+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLg---i~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLG---IALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhh---hhhhhcCCEEEEEEecccCc
Confidence                 1124789999999987443  3334578899999999998755222 11111   11122689999999999865


Q ss_pred             CccCC--HHHHH----------------------HHHHHhC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          128 NKVVS--YETAK----------------------AFADEIG---IPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       128 ~~~~~--~~~~~----------------------~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++...  .+++.                      ..+.+.+   .|+|.+|+.+|.|++-+.+.+..+-
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp  338 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP  338 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence            42110  01111                      1111112   5899999999999987766655443

>TIGR00092 GTP-binding protein YchF

Probab=98.86  E-value=1.2e-08  Score=78.81  Aligned_cols=83  Identities=16%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc---
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER---   69 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~---   69 (203)
                      ++++|+|.|++|||||+++|++... .....+..+.+.....+.+.+..               ..+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 55544555555666666555422               3678999999432   


Q ss_pred             ----cccchhhhccCCcEEEEEEECC
Q 028813           70 ----FRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        70 ----~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445678999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=7.8e-09  Score=70.06  Aligned_cols=54  Identities=22%  Similarity=0.289  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +++++|.+|+|||||+|+|.+........ ..+.+.....+..++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999876542211 122233344455544   5789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.85  E-value=5.5e-09  Score=78.27  Aligned_cols=86  Identities=20%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe---------------EEEEEEEeCCCcc--
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQE--   68 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~--   68 (203)
                      ...+++.|||.|++|||||+|+|+.........|..+++.....+.+...               ...++++|++|.-  
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36789999999999999999999998887777777777777666655332               2468899999832  


Q ss_pred             -----ccccchhhhccCCcEEEEEEECC
Q 028813           69 -----RFRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        69 -----~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                           ......-+.++.+|+++.|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                 22233444578899999998864

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.83  E-value=1.2e-08  Score=71.37  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=39.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..++++++|.||+|||||+|+|.+... .....++.+  .....+..+.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcC
Confidence            458999999999999999999998654 333334433  3333444433   578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1e-07  Score=77.53  Aligned_cols=120  Identities=18%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cccee-----------------------------------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGV-----------------------------------------   43 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~-----------------------------------------   43 (203)
                      +...||+|.|..++||||++|+++.....++.. +++..                                         
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            567899999999999999999998654322211 11100                                         


Q ss_pred             -eeEEEEEEeCCe-----EEEEEEEeCCCcc---ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028813           44 -DFKIRTVEQDGK-----TIKLQIWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV  114 (203)
Q Consensus        44 -~~~~~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  114 (203)
                       ......+-++..     .-++.++|.||.+   ...+-...+...+|++|||.++.+..+..+ .+++....   ....
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs---~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS---EEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh---ccCC
Confidence             000001111111     1256788999944   444446667889999999999877654332 23333332   2223


Q ss_pred             cEEEEEeCCCCCCCc
Q 028813          115 NKLLVGNKCDLTANK  129 (203)
Q Consensus       115 p~ilv~nK~D~~~~~  129 (203)
                      -++|+.||+|....+
T Consensus       263 niFIlnnkwDasase  277 (749)
T KOG0448|consen  263 NIFILNNKWDASASE  277 (749)
T ss_pred             cEEEEechhhhhccc
Confidence            367777899986553

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.7e-08  Score=78.43  Aligned_cols=117  Identities=18%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-----CCCc-----------cccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-----IESY-----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .+.-+|.+...-.+||||+-++.+...-     ....           ....++++...-..+...++++.++||||+-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            3455788889999999999999774221     0000           01113333333333333458999999999998


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      |--.....++..|+.|+++++..+-.-+....|.+.-+    .++|.+.++||+|..
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRM  169 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence            87777778899999999999877655455555554332    278999999999974

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.81  E-value=3.2e-08  Score=74.56  Aligned_cols=118  Identities=24%  Similarity=0.192  Sum_probs=76.0

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ....+..+|++++|+|+.++.+... ......+     .++|+++|+||+|+.+...  .....+.....+.+++.+|++
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~   86 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINAK   86 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence            4556789999999999987644211 1111111     2579999999999854321  111122223345678999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccC-CCCCCCCCCcccccCCCCCCCCC
Q 028813          154 DSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      ++.|++++.+.|.+.+.+..... ..........+.+.+.|+.+||+
T Consensus        87 ~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs  133 (276)
T TIGR03596        87 KGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST  133 (276)
T ss_pred             CcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence            99999999999988876543221 11123345667777888888764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01858 NGP_1 NGP-1

Probab=98.80  E-value=2.2e-08  Score=69.10  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=37.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..++|+++|.||+|||||+|+|.+.... ....+..+  .....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999986542 23333332  2233333332   467899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4.2e-08  Score=73.71  Aligned_cols=165  Identities=17%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc-------C---CC---C-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD-------D---SY---I-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~-------~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      ...++|.-+|....|||||--++..       .   .+   + .-.+..-++++...++.+.-....+.=.|+||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            4568999999999999999988752       1   11   1 1112234666777777776666677778999999987


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC---CHHHHHHHHHHhC----
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAKAFADEIG----  144 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~----  144 (203)
                      .....-..+.|+.|+|+.++|..- .+.++.+...+...-  ..+++++||.|+.++.+.   -+-+++++..+++    
T Consensus       132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            666666678899999999998643 222333333333321  247788899999855432   2234566666665    


Q ss_pred             -CcEEEeecC---CCCCHH---HHHHHHHHHHHHHh
Q 028813          145 -IPFMETSAK---DSTNVE---QAFMAMAASIKDRM  173 (203)
Q Consensus       145 -~~~~~~Sa~---~~~~i~---~~~~~l~~~~~~~~  173 (203)
                       +|++.-||+   .+.+-+   +.+..|++.+-.+.
T Consensus       209 ~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi  244 (449)
T KOG0460|consen  209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI  244 (449)
T ss_pred             CCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence             578876654   453322   23344445544443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.78  E-value=2.8e-08  Score=75.29  Aligned_cols=118  Identities=24%  Similarity=0.251  Sum_probs=77.2

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ....+..+|++++|+|+.++.+...  .++...   .. ++|+++|+||+|+.+...  ......+....+.+++.+|++
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~   89 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK   89 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence            4455788999999999987644211  111111   11 579999999999854311  112222233446788999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccC-CCCCCCCCCcccccCCCCCCCCC
Q 028813          154 DSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      ++.|++++.+.+.+.+.+..... ..........+.+.+.|+.+||+
T Consensus        90 ~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs  136 (287)
T PRK09563         90 KGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST  136 (287)
T ss_pred             CcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence            99999999999988876543221 11223445678888888888764

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=2.4e-08  Score=81.80  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=83.2

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY--------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      +....-+++++.+...|||||+..|+..+-              ..+.+.+.+++-....+..-.+++.+.++|+||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            345667899999999999999999975321              112223334444444444444568999999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      |.+.......-+|++++++|+..+-..+....    ++..+..+...++|+||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhhh
Confidence            99999998999999999999987654333322    33333335667889999993

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.76  E-value=1e-07  Score=72.70  Aligned_cols=160  Identities=18%  Similarity=0.168  Sum_probs=91.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------C--ccccceeeeEEEEEE-----------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------S--YISTIGVDFKIRTVE-----------------   51 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~--~~~~~~~~~~~~~~~-----------------   51 (203)
                      .+++++++|...+|||||+-.|.++.+..                +  .....+.++  .-++                 
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDI--LGFD~~GNvVNKPD~Hg~~Ld  209 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDI--LGFDVHGNVVNKPDPHGHNLD  209 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccc--eeeccccccccCCCCCCCccc
Confidence            56899999999999999997766443211                1  111111111  1111                 


Q ss_pred             ----eCCeEEEEEEEeCCCccccccchh--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           52 ----QDGKTIKLQIWDTAGQERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        52 ----~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                          +.+...-++|+|.+|++.|.....  ..-+-.|..++++-++-.-- .-..+.+...   ..-..|+++|++|+|.
T Consensus       210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLA---LaL~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLA---LALHVPVFVVVTKIDM  285 (641)
T ss_pred             ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhh---hhhcCcEEEEEEeecc
Confidence                112223578999999998855432  22345677888887664311 1111111111   1126899999999998


Q ss_pred             CCCccCCHHHHHHHHHH-----------------------------hCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          126 TANKVVSYETAKAFADE-----------------------------IGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       126 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ...+.+ .+..+.+.+.                             .-||+|.+|..+|.++.-+... .+.+.-+++
T Consensus       286 CPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls~R~~  361 (641)
T KOG0463|consen  286 CPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLSLRRQ  361 (641)
T ss_pred             CcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcCcccc
Confidence            655422 2222222211                             1368999999999998766554 444444433

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=6.3e-08  Score=73.75  Aligned_cols=155  Identities=18%  Similarity=0.214  Sum_probs=92.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----------------cc-------ceeeeEEEEEEeCC---------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYI----------------ST-------IGVDFKIRTVEQDG---------   54 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~---------   54 (203)
                      -.++++++|...+|||||+-.|....++....                .+       .+.+.....+.+..         
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            57899999999999999998776543321110                01       11111111111111         


Q ss_pred             -eEEEEEEEeCCCccccccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           55 -KTIKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        55 -~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                       ...-++++|.+|+.+|......-+.  -.|..+++++++..-.+.. ++.+-.+..+   +.|++++++|+|+.....+
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence             1124789999999988666544443  3578899999887654433 2222222222   6899999999999654211


Q ss_pred             ------------------------CHHHHHHHHHH----hCCcEEEeecCCCCCHHHHHHHH
Q 028813          132 ------------------------SYETAKAFADE----IGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus       132 ------------------------~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                                              ..++...-+++    +-.|+|.+|+..|+|++-+...|
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence                                    11111111111    12489999999999987665554

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.73  E-value=3.7e-08  Score=66.75  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=52.0

Q ss_pred             hhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ...+..+|++++|+|+.++.+..  .+..++...   . .++|+++|+||+|+.+...  .....++....+..++.+|+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34578899999999998876432  334444322   1 3689999999999854332  22334445556678999999


Q ss_pred             CCCCC
Q 028813          153 KDSTN  157 (203)
Q Consensus       153 ~~~~~  157 (203)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.70  E-value=2.4e-07  Score=82.30  Aligned_cols=114  Identities=21%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc------cccceeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhh
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESY------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSS   76 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   76 (203)
                      .+|+|++|+||||+++.- +-.++-..      ..+.+.+.. -.+.+.+   +-.++|++|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            689999999999999876 33332211      111111111 1222333   44688999932        11233555


Q ss_pred             hc---------cCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           77 YY---------RGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        77 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      ++         +..|++|+++|+.+.     ..    ...++..++++........|+++++||+|+....
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF  259 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF  259 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence            44         358999999997642     11    2345556667777777789999999999987553

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.7e-07  Score=66.42  Aligned_cols=161  Identities=20%  Similarity=0.270  Sum_probs=92.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE--EEeCCeEEEEEEEeCCCccccccc---hhhhccCCc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT--VEQDGKTIKLQIWDTAGQERFRTI---TSSYYRGAH   82 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d   82 (203)
                      ..+|+++|...+||||+.+.......|.+   |.-.+.+.+.  -.+.+.-+.+.+||.||+-.+..-   ....++.+.
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            36699999999999998876655432222   1111111110  011223367899999997544221   334578899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-------Hh-----CCcEE
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-------EI-----GIPFM  148 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-------~~-----~~~~~  148 (203)
                      ++|||+|+.+. ..+.+..+...+.+..  ..++.+=+++.|.|...++- ..+..+.+.+       ..     .+.++
T Consensus       104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~-kietqrdI~qr~~d~l~d~gle~v~vsf~  181 (347)
T KOG3887|consen  104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF-KIETQRDIHQRTNDELADAGLEKVQVSFY  181 (347)
T ss_pred             eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh-hhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence            99999998653 3344444333333322  24566788899999754321 1111111111       11     23466


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      -+|-. .-.+-|+|..+.+++..+.+
T Consensus       182 LTSIy-DHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  182 LTSIY-DHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             Eeeec-chHHHHHHHHHHHHHhhhch
Confidence            66655 45899999999888776544

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.70  E-value=1.9e-06  Score=67.05  Aligned_cols=152  Identities=15%  Similarity=0.229  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC-----------------CCCCCccccceeeeE-------EEEEEe-CCeEEEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD-----------------SYIESYISTIGVDFK-------IRTVEQ-DGKTIKLQIW   62 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~-----------------~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~   62 (203)
                      .+=|.||||..+||||||++|...                 .+|++....+-++..       ...+.. ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            466899999999999999998531                 122222211111111       112333 4567889999


Q ss_pred             eCCCc-------------ccc-ccchhhh---------------c--cCCcEEEEEEECCC----hhhHHHHHH-HHHHH
Q 028813           63 DTAGQ-------------ERF-RTITSSY---------------Y--RGAHGIIIVYDVTD----QESFNNVKQ-WLNEI  106 (203)
Q Consensus        63 D~~g~-------------~~~-~~~~~~~---------------~--~~~d~~i~v~d~~~----~~s~~~~~~-~~~~i  106 (203)
                      |+.|.             .++ .+-|-..               +  +.-=++++.-|.+-    ++.+..+++ .++++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99871             011 1111110               0  11225666666442    344444433 44444


Q ss_pred             HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC--CCHHHHHHH
Q 028813          107 DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS--TNVEQAFMA  164 (203)
Q Consensus       107 ~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~~~~~  164 (203)
                      +   .-++|+++++|-.+-...  ...+...++..+|+++++.+++.+-  ..+..+++.
T Consensus       177 k---~igKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~  231 (492)
T PF09547_consen  177 K---EIGKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE  231 (492)
T ss_pred             H---HhCCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence            4   348999999998874322  2345567788899999999887653  344444433

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.69  E-value=6.4e-08  Score=72.92  Aligned_cols=57  Identities=21%  Similarity=0.291  Sum_probs=40.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ...++++++|.||+|||||+|+|.+.... ....++.+  .....+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence            35689999999999999999999976532 23333333  3334444443   5789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.69  E-value=8.7e-08  Score=72.59  Aligned_cols=58  Identities=22%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ...++++++|.||+|||||+|+|.+... .....++.+  .....+..+.   .+.++||||.-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT--KAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE--EEEEEEEeCC---cEEEEECCCcC
Confidence            3568999999999999999999998664 333344433  3334444443   57899999963

>cd01856 YlqF YlqF

Probab=98.68  E-value=6.9e-08  Score=67.61  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +..++++++|.+|+|||||+++|.+..... ...+.+  +.....+..+   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGV--TKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCE--EeeeEEEEec---CCEEEEECCCC
Confidence            345799999999999999999999876532 222332  3333434443   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK13796 GTPase YqeH; Provisional

Probab=98.68  E-value=1e-07  Score=74.56  Aligned_cols=93  Identities=25%  Similarity=0.379  Sum_probs=60.7

Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH----HHHHhC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~~~~  144 (203)
                      .+...........+.+++|+|+.+..     ..|...+..... +.|+++|+||+|+... ....+.+..    ++..++
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence            44443333333334899999998743     234444544333 5789999999999643 222333333    344556


Q ss_pred             C---cEEEeecCCCCCHHHHHHHHHHH
Q 028813          145 I---PFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       145 ~---~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +   .++.+||+++.|++++++.|.+.
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5   58999999999999999998764

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.66  E-value=5.7e-08  Score=74.56  Aligned_cols=57  Identities=25%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ..++++|+|-||+|||||||+|.+.... ....|  +.+.....+..+.   .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCcC
Confidence            4588999999999999999999987762 22333  5555666666665   48899999954

>cd01855 YqeH YqeH

Probab=98.66  E-value=5.5e-08  Score=69.27  Aligned_cols=54  Identities=20%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY---------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..+++++|.+|+|||||+|+|.+...         ..+..++  ++.....+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence            36899999999999999999997542         2223333  334444444443   568999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.9e-08  Score=74.51  Aligned_cols=164  Identities=13%  Similarity=0.167  Sum_probs=99.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccceeeeEE---EEEEe----------------------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKI---RTVEQ----------------------------   52 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~---~~~~~----------------------------   52 (203)
                      -.++|.-+|....||||+.+++.+-.   +..+.+...++....   +.+.+                            
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g  116 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG  116 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence            46899999999999999999986532   111111111110000   00000                            


Q ss_pred             -CC---eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           53 -DG---KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        53 -~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                       .+   --..+.|.|+||++-.-.....-..-.|++++++..+....-.+..+.+..++...  -+.++++-||+|+..+
T Consensus       117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e  194 (466)
T KOG0466|consen  117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKE  194 (466)
T ss_pred             CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhH
Confidence             10   01357899999988554433333344688888888775332222222233332222  2467888999999765


Q ss_pred             ccC--CHHHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          129 KVV--SYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       129 ~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      .+.  ..+++..|...-   ++|++++||.-+.|++-+.++|.+++..-
T Consensus       195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            432  334455554432   57999999999999999999999887643

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.64  E-value=7.8e-07  Score=64.70  Aligned_cols=89  Identities=21%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRGA   81 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   81 (203)
                      -++.++|.|++||||++..|.+...+......++.........+.+  -++.+.|.||.-+       ...+.....+-+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3799999999999999999998664433333333333344444555  5788899998321       223344456778


Q ss_pred             cEEEEEEECCChhhHHHH
Q 028813           82 HGIIIVYDVTDQESFNNV   99 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~   99 (203)
                      +.+++|.|+..|-+-..+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999998877654444

>cd01859 MJ1464 MJ1464

Probab=98.63  E-value=1.4e-07  Score=65.02  Aligned_cols=56  Identities=23%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ...+++++|.+++|||||+++|.+.... ...++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4678999999999999999999975532 2223333333333333333   688999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.3e-08  Score=76.21  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=92.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--------CCC----------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYI----------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .+.-+|.++....+||||.-.+++..        ...          .+...  ++++.+.-+.++.+..++.++||||+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erer--gitiqsaav~fdwkg~rinlidtpgh  112 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERER--GITIQSAAVNFDWKGHRINLIDTPGH  112 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhc--CceeeeeeeecccccceEeeecCCCc
Confidence            34567999999999999999998641        111          11222  34445544444445589999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI  145 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      -.|.-.....++-.|+++.|||++-.-..+.+..|.+.-    ..++|.+.++||+|......  .........+.++
T Consensus       113 vdf~leverclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk~~anf--e~avdsi~ekl~a  184 (753)
T KOG0464|consen  113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGA  184 (753)
T ss_pred             ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCC
Confidence            999888888999999999999998776666666676543    23688899999999754321  1223444556665

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.61  E-value=3.4e-06  Score=57.13  Aligned_cols=148  Identities=19%  Similarity=0.300  Sum_probs=83.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCC-Ccc--------------cc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-GQE--------------RF   70 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~--------------~~   70 (203)
                      ...+||++.|+||+||||++.++...-....+ .-  ..+....+.-++...-|.+.|+. |..              .|
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            35689999999999999999988743221111 11  23556666677777778888876 311              11


Q ss_pred             -------c----cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q 028813           71 -------R----TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF  139 (203)
Q Consensus        71 -------~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~  139 (203)
                             .    ......++.+|++|  +|--.+-.+ ....+...+......++|++.++.+.+. +      ..++++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr-~------P~v~~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR-H------PLVQRI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC-C------hHHHHh
Confidence                   0    00122234456554  442222111 1134555566666668898888877653 1      112233


Q ss_pred             HHHhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          140 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       140 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      - +.+..++.   .+..|-+++++.+...+.
T Consensus       150 k-~~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         150 K-KLGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             h-hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence            2 23333332   555666688888777664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.60  E-value=6.1e-07  Score=68.71  Aligned_cols=95  Identities=24%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             EEEEEEEeCCCccccccc----hhhh--------ccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813           56 TIKLQIWDTAGQERFRTI----TSSY--------YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK  122 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK  122 (203)
                      .+++.++||||.......    ...+        -...+..++|+|++... .+..+..+.    ..   -.+.-+|+||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~---~~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EA---VGLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hh---CCCCEEEEEC
Confidence            367899999996543221    1111        12356789999998543 222222211    11   1244678999


Q ss_pred             CCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813          123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      .|....    .-.+.......++|+..++  +|++++++..
T Consensus       269 lD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        269 LDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            995432    2334555667799999887  7888876643

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.59  E-value=4.3e-08  Score=67.12  Aligned_cols=59  Identities=25%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      -.++++|++|||||||+|.|.+....      .....+..++....-+..++   ...++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence            35899999999999999999986321      11112222222333444433   3467899996654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.59  E-value=3.8e-07  Score=66.35  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhh----cCCC
Q 028813           45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEIDRY----ASDN  113 (203)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~----~~~~  113 (203)
                      +....+.++.  +.|+.+|.+|+..-+..|...+..+.++|||+..+.-+       +-..+++-+..++..    +-..
T Consensus       192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t  269 (379)
T KOG0099|consen  192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT  269 (379)
T ss_pred             eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence            4444455554  77999999999988888999999999999999876421       223333333333332    2235


Q ss_pred             CcEEEEEeCCCCC
Q 028813          114 VNKLLVGNKCDLT  126 (203)
Q Consensus       114 ~p~ilv~nK~D~~  126 (203)
                      +.+|+++||.|+.
T Consensus       270 isvIlFLNKqDll  282 (379)
T KOG0099|consen  270 ISVILFLNKQDLL  282 (379)
T ss_pred             hheeEEecHHHHH
Confidence            7799999999974

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.58  E-value=1.9e-07  Score=64.25  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=38.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ....+++++|.+|+|||||+|+|.+... .....+.++....  .+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence            3567899999999999999999998653 2233333333322  23333   3578999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.57  E-value=2.2e-06  Score=62.63  Aligned_cols=88  Identities=17%  Similarity=0.032  Sum_probs=52.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccc-cceeeeEEEEEEeC-CeEEEEEEEeCCCcccccc------chh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYIS-TIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRT------ITS   75 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~   75 (203)
                      ....-|.|+|++++|||+|+|.|++.  .+...... ..+..+........ +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            35567999999999999999999987  54322221 11111111111111 1346899999999654322      112


Q ss_pred             hhcc--CCcEEEEEEECCCh
Q 028813           76 SYYR--GAHGIIIVYDVTDQ   93 (203)
Q Consensus        76 ~~~~--~~d~~i~v~d~~~~   93 (203)
                      ..+.  -++++||..+....
T Consensus        85 ~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          85 FALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHhCEEEEeccCccc
Confidence            2222  37888888776643

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.55  E-value=1.8e-07  Score=66.91  Aligned_cols=116  Identities=22%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCC
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~  125 (203)
                      .-+.+.|.+|+..-+..|.+.+.++-.++|++.++.-          ..+++...+...+ ..-+..+.++|+++||.|+
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl  278 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  278 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence            5567889999888888899999998888887776532          2223322222222 2223357899999999998


Q ss_pred             CCCc----------------cCCHHHHHHHHHHh----C------CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          126 TANK----------------VVSYETAKAFADEI----G------IPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       126 ~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      .++.                ....+..++|...+    +      +.-..+.|.+.+|+.-+|..+.+.+.+.
T Consensus       279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            6442                12233334443222    1      2234566788899999999999887654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.54  E-value=5e-07  Score=70.42  Aligned_cols=84  Identities=15%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDS  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  155 (203)
                      +..++|.+++|+++..+.....+..++..+...   +.+.++|+||+|+.+...   +....+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence            357899999999997544555566666555433   567789999999965421   12222222 34678999999999


Q ss_pred             CCHHHHHHHHH
Q 028813          156 TNVEQAFMAMA  166 (203)
Q Consensus       156 ~~i~~~~~~l~  166 (203)
                      .|++++..+|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999998874

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=1.8e-06  Score=62.54  Aligned_cols=164  Identities=21%  Similarity=0.294  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            9 FKLLLIGDSGV--GKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         9 ~~i~v~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .-++|+|.+|+  ||-+++.+|....+..+......++++..++........+.+.-.+--+.+.-......+...+++.
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            46789999998  9999999999888766655554444444444322212222222222211111112223345678999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--------------------------------------
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--------------------------------------  128 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--------------------------------------  128 (203)
                      +||.+....+..+..|+........  -..+.++||.|....                                      
T Consensus        85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            9999999999999999874421111  124566799986421                                      


Q ss_pred             ---c---cCCHHHHHHHHHHhCCcEEEeecCC------------CCCHHHHHHHHHHHHHHHhc
Q 028813          129 ---K---VVSYETAKAFADEIGIPFMETSAKD------------STNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       129 ---~---~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~l~~~~~~~~~  174 (203)
                         .   ........+|+.++++.+++.++-+            ..|+.++|..|...+...+-
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi  226 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI  226 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence               0   0111234678888999999888732            24788888888776655544

>PRK12288 GTPase RsgA; Reviewed

Probab=98.50  E-value=3.3e-07  Score=70.98  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC-Ccc-----ccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIE-SYI-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      ++|+|.+|+|||||||+|++..... ...     .+..++....-+..++.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            6899999999999999999754321 111     11122233333444321   2488999976543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.48  E-value=1.1e-06  Score=67.73  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      +++.++||+|.......    ...+.  -..|.+++|+|+..... ...+..+...+       ..--+++||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCCc
Confidence            56899999996543221    11121  24688899999876432 22222222111       2346778999974322


Q ss_pred             cCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813          130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                          -.+...+...+.|+..++  +|++++++..+
T Consensus       296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence                223445556789988887  78888776543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.46  E-value=1.2e-06  Score=65.78  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             EEEEEEEeCCCccccccchh----h---h-----ccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813           56 TIKLQIWDTAGQERFRTITS----S---Y-----YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK  122 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~----~---~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK  122 (203)
                      .+++.++||+|.........    .   .     -...|.+++|+|++... .+..+..+...+       .+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence            36889999999764332211    1   1     12378899999997542 222222222111       245778899


Q ss_pred             CCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813          123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      .|....-    -.+..+....++|+..++  +|++++++..
T Consensus       227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            9974332    234455556789988887  7777766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.46  E-value=1.2e-06  Score=60.40  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             EEEEEEEeCCCccccccchhh--------hccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           56 TIKLQIWDTAGQERFRTITSS--------YYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      ..+..++|++|...-......        .....|.+++++|+..... +.....+..++..      .-++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence            356789999996533322222        2345788999999765332 1222333444432      22778999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.44  E-value=4.1e-06  Score=66.30  Aligned_cols=85  Identities=15%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             EEEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           56 TIKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      .+++.|+||+|.......    ...+  ....+-++||+|+.........   ...+...   -.+--+|+||.|....-
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~arg  255 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHAKG  255 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCCCc
Confidence            368899999996543221    1111  2245789999998755332111   1222111   13457789999974321


Q ss_pred             cCCHHHHHHHHHHhCCcEEEe
Q 028813          130 VVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~  150 (203)
                          -.+.......++|+.++
T Consensus       256 ----G~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       256 ----GGALSAVAATKSPIIFI  272 (429)
T ss_pred             ----cHHhhhHHHHCCCeEEE
Confidence                11233444556665544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.40  E-value=9.9e-06  Score=64.98  Aligned_cols=90  Identities=14%  Similarity=0.235  Sum_probs=58.6

Q ss_pred             EEEEEeCCCcc-------------ccccchhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813           58 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKC  123 (203)
Q Consensus        58 ~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~  123 (203)
                      +..+.|.||.-             ....+.+.+..+.+++|+|+--..-+. -..+..   .+...-+.+...|+|++|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEeec
Confidence            57789999932             223446678899999999975322111 111222   2344456678899999999


Q ss_pred             CCCCCccCCHHHHHHHHHHhC-----CcEEEe
Q 028813          124 DLTANKVVSYETAKAFADEIG-----IPFMET  150 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~  150 (203)
                      |+.+.+..+.+.++++....-     ..||.+
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV  521 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV  521 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence            998877777888877765332     356665

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=1.4e-06  Score=67.09  Aligned_cols=154  Identities=18%  Similarity=0.141  Sum_probs=93.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...+++.|+|...+||||+-..++...                               ...+....-+.+.....+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            577999999999999999887654311                               0111111122223333333333


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hHHHH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNV---KQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~---~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                        .++++.|+||+..|-.....-..++|..++|+++...+   .|+.-   ++.....+...  -...++++||+|-+..
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g--v~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG--VKHLIVLINKMDDPTV  232 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc--cceEEEEEEeccCCcc
Confidence              67899999999998777777778899999999985321   12211   11111122221  2467889999997543


Q ss_pred             c--cCCHHH----HHHHHHHhC------CcEEEeecCCCCCHHHHHH
Q 028813          129 K--VVSYET----AKAFADEIG------IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       129 ~--~~~~~~----~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +  ...+++    +..|....+      ..++++|..+|.++.+...
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            2  112222    222333222      4689999999999988765

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.34  E-value=1.2e-06  Score=64.86  Aligned_cols=57  Identities=25%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIE-S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      .++++|.+|+|||||+|+|.+..... .     ...+..++.....+...+    ..++||||...+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence            57899999999999999999754221 1     111111222333333332    268899997543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.34  E-value=1.2e-06  Score=68.42  Aligned_cols=56  Identities=20%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .+++++|.+|+|||||+|+|++...      ..+..+.++  .....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCC
Confidence            4799999999999999999997432      223333333  3333444433   357999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.33  E-value=1e-06  Score=69.00  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      .++.++|.+|||||||||+|+....      ..+..|.++  .....+..++   ...++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~---~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDD---GSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCC---CcEEEECCCcc
Confidence            4789999999999999999985431      123333333  3334444443   24789999964

>PRK12289 GTPase RsgA; Reviewed

Probab=98.32  E-value=1.5e-06  Score=67.44  Aligned_cols=56  Identities=27%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC-Ccccc-----ceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIE-SYIST-----IGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ++|+|++|+|||||||+|++..... ...+.     ..++....-+...+.   ..++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence            7999999999999999999654321 11111     112233344444321   26889999643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.29  E-value=3.5e-06  Score=58.67  Aligned_cols=135  Identities=19%  Similarity=0.339  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeC-CCcc---------------c----
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT-AGQE---------------R----   69 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~---------------~----   69 (203)
                      +|++.|++|+|||||+++++..-... ..+..+  +.......++...-+.+.|. .|..               .    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987533111 112222  44444445555666666666 3311               0    


Q ss_pred             ---cccc----hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCccCCHHHHHHHHH
Q 028813           70 ---FRTI----TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC-DLTANKVVSYETAKAFAD  141 (203)
Q Consensus        70 ---~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~  141 (203)
                         +...    ....+..+|  ++++|=-.+-.+ ....|.+.+......++|++.++.+. +.        ..++++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence               1110    111112344  666772211100 11335555555555678988888666 32        12455666


Q ss_pred             HhCCcEEEeecCCCCCH
Q 028813          142 EIGIPFMETSAKDSTNV  158 (203)
Q Consensus       142 ~~~~~~~~~Sa~~~~~i  158 (203)
                      ..++.++.++..+.+-+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            66788898877766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=64.63  Aligned_cols=59  Identities=25%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      -.+++|.+|+|||||+|+|....      .......+..++....-+..++.   -.++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            46899999999999999998632      22222233334445555555431   2577999976543

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=6.8e-06  Score=72.01  Aligned_cols=115  Identities=23%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc---cccc-eeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhhh-
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESY---ISTI-GVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSY-   77 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~-   77 (203)
                      -+|+|++|+||||++..- +..++-..   .... +.....-...+.+   .-.++||.|..        .-...|..+ 
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            579999999999998642 22221110   0000 0000111122333   44678998832        112334433 


Q ss_pred             --------ccCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           78 --------YRGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        78 --------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                              .+..|++|+.+|+.+.     ..    ...++.-++++.....-..|+++++||.|+....
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF  272 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF  272 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence                    2567999999997642     11    2234445666766677789999999999997643

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.22  E-value=1.7e-05  Score=59.57  Aligned_cols=93  Identities=22%  Similarity=0.263  Sum_probs=65.3

Q ss_pred             hhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           74 TSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      .+.-+.+.|-+++|+.+.+|+ +...+..++-.....   ++..++++||+|+.++.....++........+.+++.+|+
T Consensus        73 ~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~  149 (301)
T COG1162          73 IRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA  149 (301)
T ss_pred             eCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence            333445577777888877765 455555555444332   5666778999999876544334556666778899999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAASI  169 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~  169 (203)
                      +++.|++++.++|...+
T Consensus       150 ~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         150 KNGDGLEELAELLAGKI  166 (301)
T ss_pred             cCcccHHHHHHHhcCCe
Confidence            99999999998876543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.21  E-value=4.7e-05  Score=58.41  Aligned_cols=144  Identities=17%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-----------CCccc------cce---eeeEEEEEEeC---------------Ce
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYI-----------ESYIS------TIG---VDFKIRTVEQD---------------GK   55 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~-----------~~~~~------~~~---~~~~~~~~~~~---------------~~   55 (203)
                      .+|.|.=|||||||+++++.....           .....      ..+   .+.....+.+.               ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            578899999999999999864320           00000      000   01111111111               12


Q ss_pred             EEEEEEEeCCCccccccchhhhcc--------CCcEEEEEEECCChhhHHH-H-HHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNN-V-KQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      ..+..++++.|...-......+..        ..|++|-|+|+..-..... + .....++.      ..=+|++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence            245678899886654333333332        3578999999876433221 1 22333342      223889999999


Q ss_pred             CCCccCCHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHH
Q 028813          126 TANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  163 (203)
                      .++..  .+..+...+..+  ++++.++. .+.+..+++.
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            87663  455555555554  67888776 3444444433

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=1.3e-05  Score=62.49  Aligned_cols=139  Identities=17%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeE------------------EEEEEe---------CCeEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFK------------------IRTVEQ---------DGKTIK   58 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~~   58 (203)
                      -.++++|++|+||||++.+|.......   ......+.+.+                  ......         .-...+
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            468899999999999999987532100   00000001110                  000100         002357


Q ss_pred             EEEEeCCCccccccchhh---hc---cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCc
Q 028813           59 LQIWDTAGQERFRTITSS---YY---RGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANK  129 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~  129 (203)
                      +.++||+|..........   .+   ....-.++|++++.. +.+..+...+......-..  ...--+|+||.|.... 
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~-  296 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN-  296 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence            889999996643322211   12   223456889998764 3333332222222110000  0123567899996432 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEee
Q 028813          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                         .-.+..+....+.|+..++
T Consensus       297 ---~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        297 ---LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---ccHHHHHHHHHCcCeEEEe
Confidence               2345566667787776664

>PRK00098 GTPase RsgA; Reviewed

Probab=98.18  E-value=4.1e-06  Score=63.83  Aligned_cols=57  Identities=32%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc-cc-----cceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESY-IS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .++++|++|+|||||+|+|++....... .+     +..++.....+..++   ...++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence            5889999999999999999975432211 11     111122233333333   236889999654

>PRK13695 putative NTPase; Provisional

Probab=98.18  E-value=8e-05  Score=52.25  Aligned_cols=58  Identities=5%  Similarity=0.078  Sum_probs=34.8

Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          102 WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       102 ~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      +.+.+......+.|++++.+|...       ......+....+..++.+   +.+|-+++.+.+.+.+
T Consensus       115 ~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        115 FVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             HHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            444444444457899999887532       122344555556667766   4556667777777654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.15  E-value=5e-06  Score=63.05  Aligned_cols=59  Identities=27%  Similarity=0.280  Sum_probs=36.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc-c-----ccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESY-I-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      -.++++|++|+|||||+|.|++....... .     .+..++.....+...+   ...++|+||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence            46899999999999999999975432211 1     1111223333344432   2258999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.13  E-value=4e-06  Score=66.46  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .+.|++||-||+||||+||+|.+.+.- .+..|+.  +-.-.++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGk--TKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGK--TKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCC--cceeEEEEcCC---CceecCCCCc
Confidence            689999999999999999999987642 3333433  34445555554   6778899994

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.09  E-value=3.7e-05  Score=53.84  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCcccccc----chhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      ..+.++|++|......    ....+.  ...+.+++|+|+......   .++...+....  + ..-+|+||.|..... 
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~~-  155 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDARG-  155 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence            5678899999743211    111111  247899999998654321   22333332222  2 356777999975432 


Q ss_pred             CCHHHHHHHHHHhCCcEEE
Q 028813          131 VSYETAKAFADEIGIPFME  149 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (203)
                         ..+.+.+...++|+..
T Consensus       156 ---g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ---GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ---chhhhhHHHHCcCeEe
Confidence               2223356667777654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.04  E-value=1.2e-05  Score=56.98  Aligned_cols=71  Identities=20%  Similarity=0.182  Sum_probs=39.2

Q ss_pred             EEEEEeCCCccccccc---hhhh---ccCC---cEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           58 KLQIWDTAGQERFRTI---TSSY---YRGA---HGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~---~~~~---~~~~---d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      .+.++|+||+-+....   .+.+   +++-   -+++|++|..-- ++...+..-+..+.....-..|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            5789999997643221   1111   2221   257777775421 2222333333334333333688899999999864


Q ss_pred             C
Q 028813          128 N  128 (203)
Q Consensus       128 ~  128 (203)
                      .
T Consensus       179 ~  179 (273)
T KOG1534|consen  179 D  179 (273)
T ss_pred             h
Confidence            4

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.04  E-value=9.6e-05  Score=56.82  Aligned_cols=85  Identities=13%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccccccchhhhcc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           57 IKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      .+..++++.|......+...++.        ..+.+|.|+|+...... ........++..      .=+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            45678899997655444433321        24789999998653221 111112223321      2378899999875


Q ss_pred             CccCCHHHHHHHHHHhC--CcEEEee
Q 028813          128 NKVVSYETAKAFADEIG--IPFMETS  151 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~--~~~~~~S  151 (203)
                      ..    +.++...+..+  ++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    34444444443  5666543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.03  E-value=2.2e-05  Score=53.55  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=36.8

Q ss_pred             EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      .+++.++|++|....   ...++..+|-++++....-.+.+.-+.-  ..+      ...-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIM------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHh------hhcCEEEEeCCC
Confidence            367899999886432   2347888999999988764443322221  112      123478899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.03  E-value=0.00064  Score=46.88  Aligned_cols=145  Identities=10%  Similarity=0.084  Sum_probs=102.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...-.|+++|..+.++..|.+++......      .  ..   .+.... .+.     .|.  .    ....-..+|.++
T Consensus        13 ln~atiLLVg~e~~~~~~LA~a~l~~~~~------~--~l---~Vh~a~-sLP-----Lp~--e----~~~lRprIDlIV   69 (176)
T PF11111_consen   13 LNTATILLVGTEEALLQQLAEAMLEEDKE------F--KL---KVHLAK-SLP-----LPS--E----NNNLRPRIDLIV   69 (176)
T ss_pred             cceeEEEEecccHHHHHHHHHHHHhhccc------e--eE---EEEEec-cCC-----Ccc--c----ccCCCceeEEEE
Confidence            45678999999999999999999863210      1  11   111100 000     011  1    111234579999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |++|.....++..++.-+..+......| .+.++.+-....+...+....+.+++..|++|++.+.-...++...+-+.|
T Consensus        70 Fvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRL  148 (176)
T PF11111_consen   70 FVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRL  148 (176)
T ss_pred             EEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHH
Confidence            9999999999999988887774433333 466677777766666788899999999999999999999888888888888


Q ss_pred             HHHHHHHhc
Q 028813          166 AASIKDRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+..--.
T Consensus       149 L~~lqi~aG  157 (176)
T PF11111_consen  149 LRMLQICAG  157 (176)
T ss_pred             HHHHHHHcC
Confidence            887765433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=3e-05  Score=61.47  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC---Cccc-----c---------------ceeeeEEE--EEE-----eCCeEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIE---SYIS-----T---------------IGVDFKIR--TVE-----QDGKTIK   58 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~-----~---------------~~~~~~~~--~~~-----~~~~~~~   58 (203)
                      -.++++|+.|+||||++..|.+.....   ....     +               .+......  ..+     ..-....
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            479999999999999999886531100   0000     0               00000000  000     0001246


Q ss_pred             EEEEeCCCcccccc----chhhhc--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           59 LQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        59 ~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      +.++||+|......    ....+.  ....-.++|+|++. ...+.   +.+.....   - ..--+|+||.|....   
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~---~-~~~~~I~TKlDEt~~---  341 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG---H-GIHGCIITKVDEAAS---  341 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC---C-CCCEEEEEeeeCCCC---
Confidence            78999999654322    122221  12345778899874 33333   32222221   1 223567899997442   


Q ss_pred             CHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          132 SYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                       .-.+..+....++|+..++  +|.+|
T Consensus       342 -~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        342 -LGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             -ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence             2345566677788877664  45555

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.99  E-value=1.9e-05  Score=56.41  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      +++.++||+|.......    ...++  ...+-+++|++++.... ...+...+    ...  + +--+++||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~--~-~~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF--G-IDGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS--S-TCEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc--c-CceEEEEeecCCCC-
Confidence            56899999996543221    11221  24678899999876543 22222222    211  1 22556899997433 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEee
Q 028813          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                         .-.+..+....+.|+-.++
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEE
T ss_pred             ---cccceeHHHHhCCCeEEEE
Confidence               2345666677788776664

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=0.00017  Score=56.51  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.|+||+|.......    ...++  ...+.++||+|++-..  ..+...+..+...    ..--+|+||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence            57899999996543221    22222  2346788889876432  1222333333221    223567899997542  


Q ss_pred             CCHHHHHHHHHHhCCcEEEee
Q 028813          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        .-.+..++...++|+..++
T Consensus       393 --~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2335566667787776653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=0.00019  Score=58.29  Aligned_cols=91  Identities=19%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCccccccchhh---hcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           56 TIKLQIWDTAGQERFRTITSS---YYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      .+++.|+||+|..........   .+.  .....++|++.+..  ...+...+..+..    ..+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            367899999996533221110   010  12245677776642  2233333333322    135678999999733   


Q ss_pred             CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          131 VSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                       ..-.+.......+.++.+++  +|..|
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence             23455666667788776664  35554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.92  E-value=2.8e-05  Score=62.05  Aligned_cols=86  Identities=20%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccccccch----hhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTIT----SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      ..+.++||+|........    ..+  +...|.+++|+|++...   ........+....   ...-+|+||.|....- 
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~-  248 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG-  248 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence            378999999965532221    111  33578899999987642   1112222221111   1235678999964321 


Q ss_pred             CCHHHHHHHHHHhCCcEEEeec
Q 028813          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                         -.+.......+.|+.+++.
T Consensus       249 ---G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 ---GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cHHHHHHHHHCcCEEEEec
Confidence               2344555666777666543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=8.3e-05  Score=59.96  Aligned_cols=90  Identities=14%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCccccccc---hhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI---TSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      ..+.++|++|.......   ....+..   ..-.++|+|++...  ..+.+.....   ... ..--+|+||.|...   
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f---~~~-~~~g~IlTKlDet~---  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAY---RGP-GLAGCILTKLDEAA---  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHh---ccC-CCCEEEEeCCCCcc---
Confidence            35789999995433211   1111211   12267888887432  2222222222   221 23456789999643   


Q ss_pred             CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          131 VSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                       ..-.+..+....++|+.+++  +|++|
T Consensus       406 -~~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        406 -SLGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             -cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence             22445666777788877663  46666

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.90  E-value=0.00015  Score=52.35  Aligned_cols=62  Identities=26%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             EEEEeC-CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           59 LQIWDT-AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        59 ~~i~D~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      +.+.|| +|.++|..   ...+.+|.+|.|+|.+.. ++...+..........  -.++.+|+||.|-.
T Consensus       136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             EEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence            455665 34444432   235789999999998754 3433333222222222  27899999999953

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.89  E-value=1.1e-05  Score=62.13  Aligned_cols=57  Identities=23%  Similarity=0.357  Sum_probs=42.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .+.++++|+|-||+||||+||.|..+.. +....+  |.+.....+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p--GvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP--GVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc--cchhhhhheeccC---CceeccCCce
Confidence            6789999999999999999999997664 233333  4445555665554   7788999994

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.88  E-value=2.6e-05  Score=54.52  Aligned_cols=45  Identities=29%  Similarity=0.211  Sum_probs=28.2

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      |++++|+|+.++.+... ..+...+. ....++|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence            78999999987633110 12222211 22335899999999999643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.86  E-value=0.00025  Score=55.42  Aligned_cols=154  Identities=18%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC--C-CCccccceeeeEEEE---------------EE--e----------CCeEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY--I-ESYISTIGVDFKIRT---------------VE--Q----------DGKTIK   58 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~---------------~~--~----------~~~~~~   58 (203)
                      =.|++|||+|+||||-+-+|.....  . .....-.+++.+..-               +.  .          .-.+++
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            3589999999999999988764332  0 111111111111110               00  0          112257


Q ss_pred             EEEEeCCCccccccc----hhhhccCC--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813           59 LQIWDTAGQERFRTI----TSSYYRGA--HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        59 ~~i~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~  132 (203)
                      +.++||.|...+...    ...++..+  .-+.||++++...  ..+.+.+..+....   . --+++||.|...    .
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~---i-~~~I~TKlDET~----s  353 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP---I-DGLIFTKLDETT----S  353 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC---c-ceeEEEcccccC----c
Confidence            899999997655433    23333322  3456677776543  33444444333221   1 245689999643    2


Q ss_pred             HHHHHHHHHHhCCcEEEee--cCCCCCHHHH-HHHHHHHHHHH
Q 028813          133 YETAKAFADEIGIPFMETS--AKDSTNVEQA-FMAMAASIKDR  172 (203)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~-~~~l~~~~~~~  172 (203)
                      .-.+.....+.+.|+-.++  ..-.+++..+ -.||++.+...
T Consensus       354 ~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         354 LGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             hhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence            3345555666676655553  2223333322 23455555433

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00034  Score=55.13  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             EEEEEEEeCCCcccccc----chhhhccCC--c-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           56 TIKLQIWDTAGQERFRT----ITSSYYRGA--H-GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      .+.+.++||+|......    ....++...  + -.++|+|++...  ..+.+.+......    .+--+++||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence            36789999999654321    122223322  3 578999988653  2233333322211    133567899996432


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          129 KVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                          .-.+..+....++|+..++  +|+++
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence                2345556667788776653  46666

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00026  Score=60.01  Aligned_cols=139  Identities=17%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceeeeEE---------------EEE-Ee-----------CCeEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKI---------------RTV-EQ-----------DGKTIKL   59 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~---------------~~~-~~-----------~~~~~~~   59 (203)
                      -|+|+|+.|+||||.+.+|.+......   ...-.+.+.+.               ..+ ..           .-...++
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            589999999999999999875321100   00000000000               000 00           0122478


Q ss_pred             EEEeCCCccccccc----hhhhc--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813           60 QIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        60 ~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~  132 (203)
                      .|+||+|.......    ...+.  ...+-.++|+|++.. +.+.++..   .+...... .+-=+|+||.|....    
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~-~i~glIlTKLDEt~~----  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGE-DVDGCIITKLDEATH----  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccC-CCCEEEEeccCCCCC----
Confidence            99999995432221    11111  234567889998753 33333322   22211111 123567899997432    


Q ss_pred             HHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          133 YETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      .-.+..+....++|+.+++  +|++|
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            2345566667788877663  46666

>TIGR00959 ffh signal recognition particle protein

Probab=97.85  E-value=0.00018  Score=57.40  Aligned_cols=86  Identities=17%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.++||+|.......    ...+  .-..|.+++|+|+....   ....+...+....  + ..-+|+||.|..... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            57899999995433221    1111  22467889999987543   2233333332211  1 235668999953221 


Q ss_pred             CCHHHHHHHHHHhCCcEEEeec
Q 028813          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                         -.+.......++|+.++..
T Consensus       256 ---G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ---GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               2256666677888766644

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.84  E-value=3.7e-05  Score=57.61  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      .+..++++|+|-||+|||||||++.....      .....++.+...... +.+.+. -.+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence            35678999999999999999999864322      223334443333322 333322 24788899994

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.84  E-value=0.00013  Score=49.20  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC
Q 028813           12 LLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        12 ~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      +.-|..|+|||++.-.+...-.... ....-.+..   .......+++.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3456789999998776643211000 000000000   0001112688999999753  333456788999999999876


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           92 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        92 ~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                       ..++..+...++.+.... ...++.+|+|+.+.
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             344444444455554333 24567899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.82  E-value=0.00014  Score=58.09  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCccccc----cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFR----TITSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      +++.++|++|.....    .....++.   .-.-+.+|++++...  ..+.+.+..+.   .-+ +--+++||.|.... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~---~~~-~~~vI~TKlDet~~-  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS---RLP-LDGLIFTKLDETSS-  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC---CCC-CCEEEEeccccccc-
Confidence            578999999965432    12223333   223567788876432  22222222222   112 23577899997432 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          130 VVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                         .-.+..+....++|+..++  +|.+|
T Consensus       373 ---~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        373 ---LGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ---ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence               2346667777888877664  35554

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00014  Score=56.74  Aligned_cols=91  Identities=15%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCccccccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.++||+|.......    ...+..  ..+.+++|.++...  ...+...+..   +..- .+--+|+||.|....  
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~---f~~l-~i~glI~TKLDET~~--  357 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPK---LAEI-PIDGFIITKMDETTR--  357 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHh---cCcC-CCCEEEEEcccCCCC--
Confidence            68899999997543222    122222  33566777776432  2222222222   2211 233667899997432  


Q ss_pred             CCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813          131 VSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                        .-.+..+....++|+..++.  |.+|.
T Consensus       358 --~G~~Lsv~~~tglPIsylt~--GQ~Vp  382 (407)
T PRK12726        358 --IGDLYTVMQETNLPVLYMTD--GQNIT  382 (407)
T ss_pred             --ccHHHHHHHHHCCCEEEEec--CCCCC
Confidence              23456666778888766643  44444

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00011  Score=58.01  Aligned_cols=133  Identities=19%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC-CCC---------Cc--c----------ccceeeeEEEE-E-----EeCCeEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS-YIE---------SY--I----------STIGVDFKIRT-V-----EQDGKTIKLQ   60 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~-~~~---------~~--~----------~~~~~~~~~~~-~-----~~~~~~~~~~   60 (203)
                      .-++++|++||||||++..|.... ...         +.  .          ...+....... .     ......+++.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 000         00  0          00011111000 0     0011235789


Q ss_pred             EEeCCCcccccc----chhhhcc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           61 IWDTAGQERFRT----ITSSYYR-----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        61 i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      ++||+|......    .+..++.     ...-.+||+|++....  .+...+......    .+--+|+||.|....   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~~----~~~glIlTKLDEt~~---  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYESL----NYRRILLTKLDEADF---  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcCC----CCCEEEEEcccCCCC---
Confidence            999999643211    1222222     1235788999876541  222222222111    223567899996432   


Q ss_pred             CHHHHHHHHHHhCCcEEEee
Q 028813          132 SYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~S  151 (203)
                       .-.+..+....+.|+..++
T Consensus       375 -~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 -LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             -ccHHHHHHHHHCCCEEEEe
Confidence             2335556667788776654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.78  E-value=0.00018  Score=54.25  Aligned_cols=107  Identities=18%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc---------------
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---------------   67 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------   67 (203)
                      |+..+..+++++|++|-|||+++++|.....+... ...             ..+.+...++|..               
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg  121 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDA-------------ERIPVVYVQMPPEPDERRFYSAILEALG  121 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCC-------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence            35567889999999999999999999975533221 110             1123344444431               


Q ss_pred             ---------cccccchhhhccCCcEEEEEEECC-C--hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 028813           68 ---------ERFRTITSSYYRGAHGIIIVYDVT-D--QESFNNVKQWLNEIDRYAS-DNVNKLLVGNKC  123 (203)
Q Consensus        68 ---------~~~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~  123 (203)
                               ..........++...+=++++|=- +  ..+...-+..++.++.... -++|++.++++-
T Consensus       122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                     111222334556677788888821 1  1122333445555555443 378999988653

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK10867 signal recognition particle protein; Provisional

Probab=97.78  E-value=0.00022  Score=56.96  Aligned_cols=86  Identities=16%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCccccccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.|+||+|.......    ...+  .-..+.+++|+|+....   .+......+....  + ..-+|+||.|..... 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg-  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG-  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            57899999995433211    1111  12456789999986542   2222222232211  1 235677999963221 


Q ss_pred             CCHHHHHHHHHHhCCcEEEeec
Q 028813          131 VSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                         -.+.......++|+..+..
T Consensus       257 ---G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ---GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               2255566677888766643

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.76  E-value=0.00016  Score=40.23  Aligned_cols=46  Identities=26%  Similarity=0.270  Sum_probs=28.8

Q ss_pred             ccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           78 YRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      -+-.++++|++|++...  +++.-...+..++.... ++|+++|+||+|
T Consensus        11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            34568999999998754  45555556777766654 589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.74  E-value=0.00022  Score=45.71  Aligned_cols=102  Identities=18%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             EEEc-CCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEEC
Q 028813           12 LLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV   90 (203)
Q Consensus        12 ~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                      +++| ..|+||||+...|...-.......     .-....+.... .++.++|+|+....  .....+..+|.++++.+.
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~-----~~l~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~   74 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRR-----VLLVDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ   74 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCc-----EEEEECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC
Confidence            4444 478999998877653211110001     11111111111 17899999986533  234467889999999986


Q ss_pred             CChhhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028813           91 TDQESFNNVKQWLNEIDRYASD-NVNKLLVGNK  122 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~i~~~~~~-~~p~ilv~nK  122 (203)
                      + ..++..+..+++.+...... ...+.+|+|+
T Consensus        75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            5 45566677777766655433 3466777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.73  E-value=0.00031  Score=43.74  Aligned_cols=70  Identities=20%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-hhhhccCCcEEEEEEE
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYD   89 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   89 (203)
                      +++.|..|+||||+...+...-....        .....  .+    ++.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG--------KRVLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC--------CeEEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999988765321101        01111  11    7788999986543321 1445677899999998


Q ss_pred             CCChh
Q 028813           90 VTDQE   94 (203)
Q Consensus        90 ~~~~~   94 (203)
                      .....
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            76543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.67  E-value=0.00027  Score=45.00  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           11 LLLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        11 i~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      |.|.| ..|+||||+...+...-.. .     +  ....-++.+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~--~~vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-R-----G--KRVLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-C-----C--CcEEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56677 4689999998876542211 0     1  01111112211 678999999865332  3356778999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 028813           90 VTDQESFNNVKQWLN  104 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~  104 (203)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            65 455556655554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.66  E-value=0.00062  Score=51.06  Aligned_cols=132  Identities=19%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-----------CC----------ccccceeeeEEEEEE----------e-CCeE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-----------ES----------YISTIGVDFKIRTVE----------Q-DGKT   56 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-----------~~----------~~~~~~~~~~~~~~~----------~-~~~~   56 (203)
                      -+++++|++|+||||++..+...-..           ..          +....+...... ..          . ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999999887532100           00          000011111110 00          0 1123


Q ss_pred             EEEEEEeCCCccccccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.++|++|.......    +..++  ...+-+++|+|++...  +.+..++..+.   .- .+--+++||.|....  
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~---~~-~~~~~I~TKlDet~~--  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK---DI-HIDGIVFTKFDETAS--  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhC---CC-CCCEEEEEeecCCCC--
Confidence            68899999996643211    22222  2345688999986432  12223333332   21 234667899997542  


Q ss_pred             CCHHHHHHHHHHhCCcEEEee
Q 028813          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        .-.+..+....+.|+..++
T Consensus       227 --~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 --SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2335556667788776664

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00019  Score=57.38  Aligned_cols=115  Identities=19%  Similarity=0.296  Sum_probs=73.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC------------CCC--CccccceeeeEEEEEE----------------eCCeE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS------------YIE--SYISTIGVDFKIRTVE----------------QDGKT   56 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~------------~~~--~~~~~~~~~~~~~~~~----------------~~~~~   56 (203)
                      ..-++-++.....|||||-..|....            +..  ..+...++++.+.-+.                -++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            34467888999999999999986321            100  1111112222222211                12334


Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      +-+.++|.||+-.|.+.....++-.|+.++|+|.-+.-..+.-..+.+.+..    .+.-++++||+|.
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR  162 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR  162 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence            6788999999999999999999999999999998775443332233333422    2334667899995

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=8e-05  Score=55.05  Aligned_cols=61  Identities=23%  Similarity=0.461  Sum_probs=44.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI----STIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      -..++|+.+|..|-|||||+..|.+..+...+.    +............-.+..+++++.||.|
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            467999999999999999999999877643322    2333233333334456678899999998

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.62  E-value=5.3e-05  Score=49.67  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

...

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.57  E-value=0.00015  Score=55.91  Aligned_cols=129  Identities=24%  Similarity=0.232  Sum_probs=74.2

Q ss_pred             eCCCcc-ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH
Q 028813           63 DTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD  141 (203)
Q Consensus        63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~  141 (203)
                      +.+|+. .+.......+..+|+++.|+|+.++.+...     ..+..... +.|.++|+||.|+.+... ...-.+.+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence            345643 445556667889999999999998865211     11222222 355699999999976443 2222233333


Q ss_pred             HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccCCCCCCCC
Q 028813          142 EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS-QPSMNNARPPTVQIKGQPVAQKS  198 (203)
Q Consensus       142 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      +.+...+.+++..+.+...+...+.....+.... .+.....+....-+.+-|+.+||
T Consensus        89 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKS  146 (322)
T COG1161          89 EEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKS  146 (322)
T ss_pred             cCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHH
Confidence            3367778888888887777765444332222111 11112233344666677777766

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.57  E-value=6.1e-05  Score=52.95  Aligned_cols=23  Identities=35%  Similarity=0.725  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+|+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>PRK08118 topology modulation protein; Reviewed

Probab=97.55  E-value=7.1e-05  Score=52.13  Aligned_cols=23  Identities=39%  Similarity=0.666  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998753

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.54  E-value=0.0017  Score=50.57  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4788999999999999999853

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.53  E-value=0.00077  Score=55.18  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3677999999999999988753

>PRK07261 topology modulation protein; Provisional

Probab=97.52  E-value=7.9e-05  Score=52.12  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+|+|+|++|||||||.+.|..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.52  E-value=0.0001  Score=42.02  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+|.|+.|||||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998763

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.48  E-value=9.7e-05  Score=49.88  Aligned_cols=20  Identities=45%  Similarity=0.704  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.47  E-value=0.00089  Score=44.85  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -.+++.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.47  E-value=0.0023  Score=45.03  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58899999999999999998854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.43  E-value=8.9e-05  Score=51.41  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.43  E-value=0.0019  Score=45.44  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~  134 (203)
                      ..+++.++|+|+....  .....+..+|.+++++..+. .+...+..++..+...   +.|+.+|+||.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            3478999999976432  34456788999999998774 3555566666555443   4678899999996432   235


Q ss_pred             HHHHHHHHhCCcEEE
Q 028813          135 TAKAFADEIGIPFME  149 (203)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (203)
                      +.+++..+++++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            567777778887663

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.37  E-value=0.00018  Score=42.22  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998864

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00235 udk uridine kinase

Probab=97.37  E-value=0.00021  Score=51.62  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=23.5

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |.++  .-.-|+|+|++|||||||++.|.+.
T Consensus         1 ~~~~--~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKP--KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCC--CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4444  4467999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00024  Score=50.78  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ++||++.+-+.|+++.+.+...+.+.
T Consensus       163 PTSALDPElv~EVL~vm~~LA~eGmT  188 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEEGMT  188 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCe
Confidence            68999999999999998888776654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.34  E-value=0.00021  Score=47.86  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999998854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.33  E-value=0.00024  Score=51.56  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      ++|+|++|||||||++.+-+-..
T Consensus        34 vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcccC
Confidence            78999999999999998877543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.31  E-value=0.0018  Score=51.70  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=36.2

Q ss_pred             cccchhhhccCCcEEEEEEE-CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028813           70 FRTITSSYYRGAHGIIIVYD-VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL  125 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~  125 (203)
                      .-.+.+..|++++.+||  | .+.--+..++++++..++.+...++.++++-.|.+.
T Consensus       148 RVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E  202 (501)
T COG3845         148 RVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE  202 (501)
T ss_pred             HHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence            34446667778876663  3 122234567777777787777788999998888763

>PRK06217 hypothetical protein; Validated

Probab=97.30  E-value=0.00022  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0001  Score=53.85  Aligned_cols=147  Identities=18%  Similarity=0.259  Sum_probs=82.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCccccccchhhhcc----C
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRTITSSYYR----G   80 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~----~   80 (203)
                      +.+.-|++.|..+  +||+|++...+.-.. ..++...+++...-.-.++ .--..+|+.+|......+..--+.    .
T Consensus        43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~  119 (363)
T KOG3929|consen   43 KFEFFIGSKGNGG--KTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR  119 (363)
T ss_pred             cceeEEEEecCCc--eeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence            4567788888654  599999888765432 2334444444333322221 122468999987654333222211    1


Q ss_pred             CcEEEEEEECCChhh-HHHHHHHHHHHH---------------------------h----------hcCCCCcEEEEEeC
Q 028813           81 AHGIIIVYDVTDQES-FNNVKQWLNEID---------------------------R----------YASDNVNKLLVGNK  122 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~---------------------------~----------~~~~~~p~ilv~nK  122 (203)
                      .-.+|++.|+++++. |..++..+..++                           +          ..+-.+|++||+.|
T Consensus       120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence            225899999998764 223322222211                           0          01114899999999


Q ss_pred             CCCCCCcc-----CCHHHHHHHHHHhCCcEEEeecCCC
Q 028813          123 CDLTANKV-----VSYETAKAFADEIGIPFMETSAKDS  155 (203)
Q Consensus       123 ~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .|.....+     .....++.++..+|..++..|++..
T Consensus       200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe  237 (363)
T KOG3929|consen  200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKME  237 (363)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Confidence            99854422     2223345566677777777777644

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.00031  Score=51.31  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      ++++|++|+|||||++.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999887443

>smart00072 GuKc Guanylate kinase homologues

Probab=97.27  E-value=0.0027  Score=44.91  Aligned_cols=22  Identities=41%  Similarity=0.679  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      |+++|++||||+|+++.|....
T Consensus         5 ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        5 IVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            8899999999999999998763

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.25  E-value=0.0003  Score=55.05  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -+++++|.+|+|||||++.|.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            368999999999999999998754

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.25  E-value=0.00026  Score=46.69  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

...

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.22  E-value=0.00029  Score=47.54  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .|+|+|+.|||||||++.|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.22  E-value=0.0013  Score=43.83  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.22  E-value=0.011  Score=41.30  Aligned_cols=84  Identities=8%  Similarity=0.059  Sum_probs=51.2

Q ss_pred             EEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH
Q 028813           58 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK  137 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~  137 (203)
                      ++.++|+|+....  .....+..+|.+|++++.+. .++..+..+++.+....  .....+|+|+.|.....  ..+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            7899999986433  23445678999999998764 34455555555554421  23467889999864321  222234


Q ss_pred             HHHHHhCCcEE
Q 028813          138 AFADEIGIPFM  148 (203)
Q Consensus       138 ~~~~~~~~~~~  148 (203)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555676655

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.00023  Score=47.76  Aligned_cols=25  Identities=36%  Similarity=0.490  Sum_probs=22.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +...+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            6778999999999999999999874

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.21  E-value=0.0026  Score=51.57  Aligned_cols=88  Identities=11%  Similarity=0.087  Sum_probs=44.4

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      .+|||=|+-+.......+.+.+.+..+ .....|+|++++-+-............+.+....++..+..+.....=+...
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~  275 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF  275 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence            467888876544333333333333222 2346889999877655322211111122233455666666666655555555


Q ss_pred             HHHHHHHHH
Q 028813          162 FMAMAASIK  170 (203)
Q Consensus       162 ~~~l~~~~~  170 (203)
                      +..|.....
T Consensus       276 L~ric~~e~  284 (634)
T KOG1970|consen  276 LKRICRIEA  284 (634)
T ss_pred             HHHHHHHhc
Confidence            555554433

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.19  E-value=0.00015  Score=60.80  Aligned_cols=103  Identities=11%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             EEEEEeCCCcc-------------ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           58 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        58 ~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      .+++.|.||..             ....+...++..-+.+|+.+...+-+  -....++......-+.+...+.|++|.|
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~D  210 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKFD  210 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence            46788999832             23445667788888888888765522  1123456666666777788899999999


Q ss_pred             CCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813          125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      +.+........+.........+++.+..+.+..++.-.
T Consensus       211 lmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~di~~~k  248 (657)
T KOG0446|consen  211 FMDKGTNAVTRLVGRPITLKVGYVGVVNRSQSIIDFKK  248 (657)
T ss_pred             hhhcCCcceeeecCCccccccceeeeeccchhhhhhhh
Confidence            86432211111111111223456666666555554444

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.18  E-value=0.00094  Score=46.58  Aligned_cols=27  Identities=22%  Similarity=0.161  Sum_probs=23.2

Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      ++||++.+=+.|++..+.++..+.+..
T Consensus       179 PTSALDPElVgEVLkv~~~LAeEgrTM  205 (256)
T COG4598         179 PTSALDPELVGEVLKVMQDLAEEGRTM  205 (256)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence            689999999999999988888877653

>PRK03839 putative kinase; Provisional

Probab=97.18  E-value=0.00033  Score=49.39  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+|+|.|||||||+.+.|..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.18  E-value=0.00063  Score=49.09  Aligned_cols=26  Identities=31%  Similarity=0.532  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ....-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35566889999999999999999753

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0021  Score=49.97  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------cccceeeeEEE--EEE-----------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY---------------------ISTIGVDFKIR--TVE-----------   51 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~--~~~-----------   51 (203)
                      .+.--|+++|..|+||||.+-.|....-...+                     ....++.++..  ..+           
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            34556899999999999998877532100000                     00011222221  110           


Q ss_pred             eCCeEEEEEEEeCCCcccccc-chhhh-----ccCCcEEEEEEECCChhhHHH
Q 028813           52 QDGKTIKLQIWDTAGQERFRT-ITSSY-----YRGAHGIIIVYDVTDQESFNN   98 (203)
Q Consensus        52 ~~~~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~s~~~   98 (203)
                      +....+++.|.||+|...... +....     .-..|-+|||.|++-....+.
T Consensus       179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            122347899999999543211 11111     234688999999987665443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.16  E-value=0.0018  Score=46.41  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      |+|+|++||||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.00025  Score=49.48  Aligned_cols=24  Identities=42%  Similarity=0.668  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .-+++.||+|+||||++++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999765

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.15  E-value=0.0004  Score=45.99  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.15  E-value=0.00043  Score=46.00  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      -.++++|++|+||||+++.+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3689999999999999999987554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.14  E-value=0.00041  Score=44.32  Aligned_cols=20  Identities=45%  Similarity=0.780  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14530 adenylate kinase; Provisional

Probab=97.14  E-value=0.00039  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998863

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.14  E-value=0.0004  Score=46.72  Aligned_cols=21  Identities=52%  Similarity=0.844  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.13  E-value=0.00044  Score=49.08  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999664

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.13  E-value=0.00049  Score=48.02  Aligned_cols=26  Identities=35%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+++    ..|+++|++||||||+...|..
T Consensus         1 ~~~~----~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          1 MLKG----PNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCCC----CeEEEEcCCCCCHHHHHHHHHH
Confidence            5555    6899999999999999998864

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.13  E-value=0.00055  Score=47.77  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..-+.|+|.+|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999864

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.12  E-value=0.00041  Score=50.90  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=22.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +..++++|+|.+|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999998854

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.10  E-value=0.0004  Score=48.89  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.09  E-value=0.00048  Score=48.88  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -.++|+|++|||||||++.+++.-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999998743

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK08233 hypothetical protein; Provisional

Probab=97.07  E-value=0.00057  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367899999999999999999753

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.07  E-value=0.0036  Score=47.01  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -|+|.|++||||||++++++..-
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            38999999999999999987654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.06  E-value=0.00072  Score=48.88  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..+.|+|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4588999999999999999998763

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.06  E-value=0.00052  Score=48.69  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.05  E-value=0.00045  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.05  E-value=0.00053  Score=48.25  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.05  E-value=0.00066  Score=47.54  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+|+++|++|+||||+.+.|...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999998753

>PRK13949 shikimate kinase; Provisional

Probab=97.05  E-value=0.00057  Score=47.72  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+|+|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.05  E-value=0.00051  Score=48.62  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      .-|+++|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.04  E-value=0.00028  Score=54.74  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=0.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG   66 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   66 (203)
                      ..-|.|.++|-||+||||+||+|-....-...+-.-.    .+.+.+-.--.+|.++|+||
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE----TKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE----TKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc----chHHHHHHHHhceeEecCCC

>PRK02496 adk adenylate kinase; Provisional

Probab=97.04  E-value=0.00059  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>PRK14532 adenylate kinase; Provisional

Probab=97.04  E-value=0.00054  Score=48.63  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+++|+|||||||+.+.|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00055  Score=47.19  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ++|+|.|.||+||||+.+.|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999987

>PRK00625 shikimate kinase; Provisional

Probab=97.02  E-value=0.0006  Score=47.77  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.00  E-value=0.00069  Score=47.59  Aligned_cols=22  Identities=32%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++|+|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            3689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.00  E-value=0.00062  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..++|+|+|+|||||||+.+.|..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998854

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.99  E-value=0.0011  Score=44.53  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY   37 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~   37 (203)
                      ..+.++.-..++.|-||+|||||+++|-..-+....
T Consensus         3 ~~~~nR~~~fIltGgpGaGKTtLL~aLa~~Gfatve   38 (183)
T COG3911           3 VRPFNRHKRFILTGGPGAGKTTLLAALARAGFATVE   38 (183)
T ss_pred             ccccccceEEEEeCCCCCcHHHHHHHHHHcCceeec
Confidence            345566677899999999999999999876654333

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.00064  Score=49.32  Aligned_cols=20  Identities=45%  Similarity=0.685  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+++|++|||||||++.+.+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            89999999999999999987

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.99  E-value=0.00087  Score=46.84  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|+|||||+|-+.+=.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhcc
Confidence            58999999999999999877643

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.99  E-value=0.009  Score=45.71  Aligned_cols=144  Identities=21%  Similarity=0.258  Sum_probs=77.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------cccceeeeEEEE-------EEe-----
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY---------------------ISTIGVDFKIRT-------VEQ-----   52 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~-------~~~-----   52 (203)
                      .++.-|+++|-.|+||||-|-+|...-.....                     ....+.......       +.+     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            45788999999999999999877531100000                     000111111111       000     


Q ss_pred             -CCeEEEEEEEeCCCccccccchhh-------hccCCcE-----EEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEE
Q 028813           53 -DGKTIKLQIWDTAGQERFRTITSS-------YYRGAHG-----IIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLL  118 (203)
Q Consensus        53 -~~~~~~~~i~D~~g~~~~~~~~~~-------~~~~~d~-----~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~il  118 (203)
                       ....+++.++||+|.-+.......       .....+.     +++++|+.-. +.+.+++.+-+.+      +. --+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l-~Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GL-DGI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CC-ceE
Confidence             112367899999996543322211       2223333     7778898765 4455555444333      12 245


Q ss_pred             EEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813          119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus       119 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++||.|-...--.    +..++...++|+..+-  -|++++++.
T Consensus       290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~~DL~  327 (340)
T COG0552         290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGYDDLR  327 (340)
T ss_pred             EEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCChhhcc
Confidence            7899995332222    3345667788877663  266666654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.97  E-value=0.00099  Score=47.99  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-90
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-89
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-88
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-88
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-88
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-87
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-86
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-85
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-85
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-83
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-80
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-79
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-77
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-74
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-61
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-60
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-59
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-57
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-56
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-55
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-54
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-54
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-54
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		6e-52
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-51
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-51
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-51
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-50
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-48
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-48
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-47
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-47
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-47
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-47
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-47
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-47
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		6e-47
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		7e-47
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		9e-47
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-46
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-44
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-44
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-43
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-43
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		8e-43
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-43
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-41
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-40
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-40
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-40
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-40
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-40
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-40
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-40
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-40
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-40
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-40
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-40
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-40
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-39
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-39
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-39
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-39
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-38
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-38
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-37
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-37
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-37
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		9e-37
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-36
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-35
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-35
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-35
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-35
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-35
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-34
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-34
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-34
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		7e-34
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-33
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-33
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-33
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-33
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-32
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-31
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-31
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-31
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-30
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-30
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-30
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-30
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-29
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-29
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-29
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-26
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-26
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-26
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		6e-26
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		6e-26
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		8e-26
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		8e-26
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-25
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-25
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-25
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-25
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		7e-25
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-24
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-22
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-22
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-22
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-22
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-22
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-22
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-22
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-22
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-22
1byu_A	216	Canine Gdp-Ran Length = 216		5e-22
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-22
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		8e-22
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-22
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-21
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-21
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-21
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-21
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-21
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-21
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-21
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-21
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-21
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-21
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-21
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-21
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-21
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		3e-21
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-21
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-21
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-21
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-21
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-21
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		6e-21
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-21
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-21
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-21
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-21
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-21
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-21
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-21
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-21
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-21
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		9e-21
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-20
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-20
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-20
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-20
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-20
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-20
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-20
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-20
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-20
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-20
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-20
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-20
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-20
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-20
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-20
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-20
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		9e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-20
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-19
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-19
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-19
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-19
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-19
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-19
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-19
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-19
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-19
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-19
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-19
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		7e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		7e-19
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		9e-19
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-18
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-18
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-18
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-18
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-18
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		5e-18
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		7e-18
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-18
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		8e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-18
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		9e-18
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-17
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-17
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-17
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-17
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-17
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		9e-17
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-16
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-16
1mh1_A	186	Small G-Protein Length = 186		2e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-16
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-16
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-16
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-16
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-16
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-16
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-16
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-16
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		5e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-16
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		7e-16
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		9e-16
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-15
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-15
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-15
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-15
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		5e-15
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		6e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		9e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-14
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-13
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-13
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-13
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-13
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-13
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-13
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-13
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-13
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-13
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-13
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-13
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-13
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-13
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		7e-13
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-13
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		8e-13
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		8e-13
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		9e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		9e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-12
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-12
2kb0_A	178	Cdc42(T35a) Length = 178		3e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-12
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		4e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-11
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-11
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-10
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-10
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-10
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-09
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-09
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-09
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-09
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-09
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		4e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-09
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		7e-09
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		8e-09
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		9e-09
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-08
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-08
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-08
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-08
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		5e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		6e-08
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-07
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-07
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-07
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-06
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		1e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-06
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		3e-06
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		3e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-06
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		6e-06
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		6e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		7e-06
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		3e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-05
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-05
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		2e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		2e-04
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		7e-04
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		7e-04

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  327 bits (837), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 154/188 (81%), Positives = 165/188 (87%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
Query: 181 NARPPTVQ 188
            A    V+
Sbjct: 189 GAEKSNVK 196

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  322 bits (826), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 151/173 (87%), Positives = 161/173 (93%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGK+CLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  320 bits (820), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/174 (86%), Positives = 160/174 (91%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
            KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  320 bits (819), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 150/171 (87%), Positives = 159/171 (92%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 1   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           CDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  319 bits (818), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 160/173 (92%)
Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 19  SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 78
Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 79  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  316 bits (810), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 158/171 (92%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           PEYD LFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 1   PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           CDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  313 bits (803), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 157/173 (90%)
Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           NPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+F   AA IK R  
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 156/172 (90%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 4   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
            DLT  KVV   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM 
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 156/172 (90%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 4   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGNK
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
            DLT  KVV   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM 
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  303 bits (776), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 152/164 (92%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           FRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           VV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M SQ ++N
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLN 179
Query: 181 NARPP-----TVQIKGQPVAQKSGCC 201
                      V +KGQ +    GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 161/207 (77%), Gaps = 7/207 (3%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M SQ ++N
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLN 179
Query: 181 NARPP-----TVQIKGQPVAQK-SGCC 201
                      V +KGQ +     GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  283 bits (724), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 151/173 (87%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+  + KT+KLQ
Sbjct: 2   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQ 61
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGIIIVYDVTD++SF+NVKQW+ EIDRYA +NVNKLLVG
Sbjct: 62  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           NKCDL + +VV+ +  +  AD  GI F+ETSAK++ NVEQAF  MA  IK R+
Sbjct: 122 NKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 144/168 (85%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKC
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 171
           DL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/117 (93%), Positives = 113/117 (96%)
Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           LLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           RTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT 
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 117

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 138/173 (79%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           NKCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 136/168 (80%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
              + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 138/180 (76%), Gaps = 5/180 (2%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVG 120
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI----KDRMASQ 176
           NK D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +    KD +A Q
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 134/171 (78%), Gaps = 1/171 (0%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           +   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 137 MET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           P    + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+W
Sbjct: 2   PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 61
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK
Sbjct: 62  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 121
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
            D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 122 SDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGNK D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 124/165 (75%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           +   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 128/170 (75%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGNKCD
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           +   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 130/189 (68%), Gaps = 2/189 (1%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AG ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARP 184
               +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++ +   S++ A P
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE--SLDTADP 182
Query: 185 PTVQIKGQP 193
                K  P
Sbjct: 183 AVTGAKQGP 191

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + ++ DG  +KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
           D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K R    P
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 123/168 (73%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVGNKCDL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
              +VV  E  +  AD++G  F E SAK++ NV+Q F  +   I ++M
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 120/166 (72%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK 
Sbjct: 85  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 119/167 (71%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           P   YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIW
Sbjct: 16  PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 135
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
            DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I
Sbjct: 136 SDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 119/165 (72%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +   Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQ
Sbjct: 3   LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+G
Sbjct: 63  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           NK DL + + V  E  +AFA E G+ FMETSAK ++NVE+AF+  A  I ++
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 128/196 (65%), Gaps = 14/196 (7%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF---------MAMAASIKDRMAS 175
           L   + V  + A+AFA++  + F+ETSA DSTNVE+AF         +     I DR A 
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181
Query: 176 QPSMNN-----ARPPT 186
             S  N     + PPT
Sbjct: 182 DESPGNNVVDISVPPT 197

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 119/166 (71%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK 
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 119/166 (71%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK 
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 123
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 124 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 127/179 (70%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNA 182
           DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +         +NN 
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 119/168 (70%)
Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  183 bits (464), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 118/166 (71%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVGNK 
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +YD+LFKL+L+GD+ VGK+C++ RF   ++ E   STIGVDF ++T+E  GK +KLQI
Sbjct: 23  DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 122 KCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI 169
           K DL+  + VS   A++ A+   I   +ETSAKDS+NVE+AF+ +A  +
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  179 bits (455), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+  ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 126 TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
             ++ ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 112/165 (67%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 111/165 (67%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 27  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQ RFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 87  AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 116/173 (67%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT+E +GK IK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G +IVYD++   S+ N   WL+E+   A DNV   L+GNK 
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           DL   + V  E +K FA E  + F ETSA +S NV++AF  +  +I  +++  
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKL 59
           M  +YDYLFK++LIGDSGVGKS LL RF  D + IES  STIGV+F  RT+E + K IK 
Sbjct: 3   MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESK-STIGVEFATRTIEVENKKIKA 61
Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 119
           QIWDTAG ER+R ITS+YYRGA G +IVYD++   S+ N   WL E+   A DNV   L+
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI 121
Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           GNK DL   + V  + AK FA E  + F ETSA +S NV++AF  +  +I
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 121/178 (67%), Gaps = 2/178 (1%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE-QDGKTIKLQIWD 63
           YDYLFK++LIGDSGVGKS LL RF  D +     STIGV+F  ++++ ++ K IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+   A  N+  LLVGNK 
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD-RMASQPSMN 180
           DL   +V++   A  +A +  + F+ETSA ++TNVE AF  +   I + R   Q + N
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 116/170 (68%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D+LFK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GKT+KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
              + V++  A  FA E  + F+ETSA    NVE+AF+  A +I +++ S
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 118/175 (67%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+  YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           NK DL A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 114/168 (67%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 8   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GNK D
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L A++ V++  A  FA E  + F+ETSA    +VE+AF+  A  I ++
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  ++V  D  T+K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL   
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           ++V YE A+A+AD+  + FMETSAK + NV   F+A+A  +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 118/175 (67%)
Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           K DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 117/174 (67%)
Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
            +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QIW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGNK
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
            DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 113/168 (67%)
Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 5   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AG ERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GNK D
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L A++ V++  A  FA E  + F+ETSA    +VE+AF+  A  I ++
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 107/161 (66%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STI   F  +TV  D  T+K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVGNKCDLTA 127
           RFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +   LVGNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPT 186
           N+ V       FA +    F+E SAK    V+ AF  +   I        S N    P+
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V ++ A+++AD+  + F ETSAK S NV + F A+A  +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 113/168 (67%), Gaps = 5/168 (2%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 68  ERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDL 125
           ERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++  ++++ ++LVGNKCDL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 170
            +   V  + A+ FAD   +P  ETSAK   D+ +VE  FM +A  +K
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 11/181 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTV--------EQDGK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V           GK
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
             K  LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I  R
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 173 M 173
           M
Sbjct: 201 M 201

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           + P    +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61  IWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLL 118
           +WDTAGQERFR ++   YYR  H ++ VYD T+  SF+++  W+ E  ++  ++++ ++L
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL 141
Query: 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 170
           VGNKCDL +   V  + A+ FAD    P  ETSAK   D+ +VE  F  +A  +K
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 103/157 (65%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD G GKS L+LRF  D ++E   STIG  F  +T+  +  T+K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           + ++   YYRGA   IIV+DVT+Q SF   K+W+ E+    + N+   L GNK DL   +
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
            V+ E A+ +A E G+ FMETSAK +TNV++ F  +A
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 128/215 (59%), Gaps = 18/215 (8%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
             K  LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
Query: 173 MASQPSMNNARPPTV------QIKGQPVAQKSGCC 201
           M          P TV      ++ G+  A+K   C
Sbjct: 187 MEKCVEKTQV-PDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 117/181 (64%), Gaps = 11/181 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------- 53
           +YDYL K L +GDSGVGK+ +L ++ D  +   +I+T+G+DF+ + V             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 54  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
           G+ I LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A S+
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L GNK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I  R
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
Query: 173 M 173
           M
Sbjct: 187 M 187

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 117/181 (64%), Gaps = 11/181 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
             K  LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
Query: 173 M 173
           M
Sbjct: 187 M 187

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
             K  LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++L GD+ VGKS  L+R   + + E+  +T+GVDF+++T+  DG+   LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL--- 125
           RFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A + V  +LVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 ---TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
                 K V     +  A   G  F ETSAKD +N+ +A + +A  +K R
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56  TIK--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SD 112
             K  LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 127 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 188
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + +R   + 
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 190
Query: 189 IK-----GQPVAQKSGCCS 202
           IK      QPV++  G CS
Sbjct: 191 IKLEKPQEQPVSE--GGCS 207

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 101/161 (62%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF  D +  +   TIG  F  +TV    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RF ++   YYRG+   +IVYD+T Q+SF  +K+W+ E+  +  +N+   + GNKCDL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V  + AK +A+ IG   +ETSAK++ N+E+ F  ++  I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 108/161 (67%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF+   +W++++      +V  +LVGNK DL+  
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 188
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + +R   + 
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 193
Query: 189 IK-----GQPVAQKSGCC 201
           IK      QPV++  GC 
Sbjct: 194 IKLEKPQEQPVSE-GGCL 210

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  139 bits (351), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 103/160 (64%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
             + VS + A+++A+ +G     TSAK +  +E+ F+ + 
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 188
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + +R   + 
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 183
Query: 189 IK 190
           IK
Sbjct: 184 IK 185

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 106/161 (65%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + ++ E  +  A E+ + F+ETSAK   NV+Q F  +A+++
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 11/177 (6%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKL 59
           M+     + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG K   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--- 116
           Q+WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A  NVN    
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPET 118
Query: 117 ---LLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 168
              +++GNK D   + K+VS ++A+  A  +G IP   TSAK++ NV+ AF  +A S
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 103/163 (63%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+   F  + +   GK + L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
             + VS + A+++A+ +G     TSAK +  +E+ F+ +   +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 102/160 (63%)
Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+   F  + +   GK + L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
             + VS + A+++A+ +G     TSAK +  +E+ F+ + 
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+ +G+  VGK+ ++ RF  D++  +Y STIG+DF  +T+  D   ++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   I+VYD+T+++SF N  +W+ +I      +V   LVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + V+YE     A E    F ETSAK   N++  F   A+ +
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           D+   + VS E A+A+  + G  P+ ETSAKDSTNV  AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT--- 126
           F ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
             + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKC 123
           ERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++L+GD GVGKS L+ R+  + +      TIGV+F  R +E DG+ + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKC 123
           ERF+++ + +YRGA   ++ + V D++SF N+  W  E   YA     ++   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 124 DLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           D   ++ V+ E A+ +  E G  P++ETSAKD TNV  AF
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 166
           +++GNK D   N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 121 VVLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 106/171 (61%), Gaps = 6/171 (3%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNK 116
           IWDTAG ERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 117 LLVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 166
           +++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 121 VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           F  IT +YYRGA   ++V+  TD+ESF  +  W  ++     D +   LV NK DL  + 
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDS 125
Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
            +  E A+  A  + + F  TS K+  NV + F  +A
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDL 125
           E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +  D +  L+VGNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
              + V  E A++ A+E G+ ++ETSAK   NV++ F  +   I+ +  S+
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDL 125
           E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +  D +  L+VGNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
              + V  E A++ A+E G+ ++ETSAK   NV++ F  +   I+ +  S+
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 180
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 181 VMDPALAAQ 189

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPP 185
             V S + A+  A   GIP++ETSAK    VE AF  +   I+     Q  +    PP
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN-----NAR 183
           KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +         
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEFVASPALA 185
Query: 184 PPTVQIKGQ 192
           PP VQ+  Q
Sbjct: 186 PPEVQVDEQ 194

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 192
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 193 VMDPALAAQ 201

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y+ T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + ++E Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           ++  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y+ T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II +DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R       + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 192
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 193 VMDPALAAQ 201

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 169
            +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMNNARPPTV 187
           KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M    PP V
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 188 QIKGQPVAQ 196
            +     AQ
Sbjct: 188 VMDPALAAQ 196

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 130 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
           KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
           KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 168

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGN+CDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  +I   ++ + V  DG+T  L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 129 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGK+ L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  +I   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ +  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +    +
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 21  KSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L ++F   ++IE Y  TI  DF  + +E D     L+I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAF 139
             G I+VY + +Q+SF ++K   ++I R    + V  +LVGNK DL + + VS    +A 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 140 ADEIGIPFMETSAKDSTNVEQAF 162
           A+E G PFMETSAK  T V++ F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
               +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQPS 178
            + S
Sbjct: 187 KKKS 190

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQPS 178
            + S
Sbjct: 185 KKKS 188

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 187
Query: 175 SQPS 178
            + S
Sbjct: 188 KKKS 191

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 175 SQPS 178
            + S
Sbjct: 187 KKKS 190

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNKCDL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
            K++++GD   GK+ L   FA +++ + Y  TIG+DF +R +   G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCD 124
                +   Y  GA G+++VYD+T+ +SF N++ W   + + + ++  +    LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L   + +  E    F  E G      SAK   +V   F  +AA I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SD+V  +LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V  + A   A   GIPF+ETSAK    VE AF  +   I+
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 16/171 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++L+GD G GK+ LL+ FAD ++ ESY  T+   + +  ++  GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +    V  ++VG K DL  +
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKD 153
Query: 129 K------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 166
           K             V+Y   +  A  +G + ++E SA+   NV   F   A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 128
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 40/198 (20%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE----------------- 51
           +K +L+G+S VGKS ++LR   D++ E+  +TIG  F    V                  
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 52  --------------------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91
                               ++   IK  IWDTAGQER+ +I   YYRGA   I+V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 92  DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS 151
           +  + +  K W+N++    S N   +LV NK D    +V   E  K +A +  + F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQVDILEVQK-YAQDNNLLFIQTS 184
Query: 152 AKDSTNVEQAFMAMAASI 169
           AK  TN++  F  +A  I
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 4/172 (2%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKL 59
           M+P      KL+++G  GVGKS L ++F    ++  Y  TI   + KI +V  DG   +L
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSV--DGIPARL 59
Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 118
            I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +L
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119
Query: 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           VGNK DL + + V    A AF     + + E SAK   NV++AF  +  +++
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++ + +  D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I     D  ++  +LVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
            ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + V   +S  N+ ++W+ E+  +   NV  +LV NK DL ++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           + V  E A+   + +                ++E SAK    V + F  A  A+++ R  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204
Query: 175 SQ 176
           SQ
Sbjct: 205 SQ 206

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQPS 178
            + S
Sbjct: 185 KKKS 188

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++ R  
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 175 SQPS 178
            + S
Sbjct: 185 KKKS 188

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++    TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNK DL A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +K+ LIGD GVGK+  + R  D  + ++Y +T+G V+  +  ++  G  IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           E+   +   YY GA G I+ +DVT + +  N+ +W+ E      +    ++  NK D+  
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            + +S +            + E SAK + N    F+ +A     R
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK   + +                ++E SAK    V + F MA  A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    V  DG+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 127 ANK--------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
            +K        V++    +    +IG   ++E S+K   NV+  F
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLRQD 144
Query: 129 KVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK   + +                ++E SAK    V + F MA  A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D +   Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +       Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +  + E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMA 164
            +K           ++    +     IG P ++E S+K   NV+  F A
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 17/175 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASI 169
           +    E AK              A+ IG   +ME SAK    V + F MA  A++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+CLL+ +  +++   Y+ T+  +F    V  +G T+ L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLR 125
Query: 127 ANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMAS 175
            +K           ++    +     IG P ++E S+K   NV+  F A       R+  
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI-----RVVL 180
Query: 176 QP 177
           QP
Sbjct: 181 QP 182

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 9/192 (4%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ I  +E DGK ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 124
Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 188
           +    E AK   +    P      +D  N   AF  +  S K +   +     A    +Q
Sbjct: 125 EHTRRELAKMKQE----PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
Query: 189 IKGQPVAQKSGC 200
           ++     ++ GC
Sbjct: 181 VRKN--KRRRGC 190

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
            +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
            +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 10/172 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL + G +GVGKS L++RF    +I  Y  T+   ++ +    D + + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDTAGQED 88
Query: 70  FRTIT-SSYYRGAHGIIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLLVGNKCDL 125
             TI    + R   G ++VYD+TD+ SF  V   K  L+EI +    NV  +LVGNK DL
Sbjct: 89  --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 126 TANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAFMAMAASIKDRMASQ 176
             ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R   Q
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             K + +GD  VGK+C+L+ +  +++   Y+ T+  +F    V  DG T+ L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    YRGA   ++ + +  + S+ N+ K+WL E+  YA   +  +LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP-GIPIVLVGTKLDLR 123
Query: 127 ANK--------VVSYETAKA--FADEIG-IPFMETSAKDSTNVEQAF 162
            +K          S  TA+       IG + ++E S+K   NV+  F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++SY  TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 60
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 61  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
            +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Query: 21  KSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  AHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAF 139
             G ++V+ VTD+ SF  + ++  +I R    D    +L+GNK DL   + V+ E  +  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 140 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           A ++ + +ME SAK   NV+QAF  +   I+
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  + D + E Y+ T+  ++ +  +E DGK ++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL  +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 129 KVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           +    E AK              A+ IG   +ME SAK    V + F MA  A+++
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL- 125
           E +  +    Y      +I + V +  SF NVK +W+ E+  YA  NV  LL+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 126 -----------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                         K +  E  +  A EIG   ++E SA     ++  F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    +++ Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK 170
            + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    +++ Y  TI   ++  T E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK 170
            + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV NK DL  
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK 170
            + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV NK DL  
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK 170
            + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 176

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 4/155 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K+ ++G   VGKS L ++F +  +++S   TI   F K+ TV  +G+   LQ+ DTAGQ+
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV--NGQEYHLQLVDTAGQD 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
            +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+P  +   K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L 
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 74
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLV 119
           +WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLV
Sbjct: 75  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLV 133
Query: 120 GNKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 157
           G K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 134 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+P  +   K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELS 79
Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLV 119
           +WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLV
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLV 138
Query: 120 GNKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 157
           G K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG K DL  +
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRDD 122
Query: 129 K------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  +
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDD 132
Query: 129 K------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+  +   + E Y+ T+  ++ +  VE DG+ ++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y  ++ ++I + +   +S  NV++ W+ E+  +    V  +LVG K DL   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVGCKVDLRND 129
Query: 126 ---------TANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMA 164
                       + V+ +  ++ AD+IG   + E SAK    V + F A
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  ++    YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 128 NK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
            +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
           K++++G   VGK+ L  +F +  + E Y  T+   + KI T+ +D     L + DTAGQ+
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD--EFHLHLVDTAGQD 83
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
            +  +  S+  G HG ++VY VT   SF  ++    ++   +    V  +LVGNK DL+ 
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
            + V     K  A+  G  FME+SA+++   +  F  +   I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
            +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLT 126
           E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 127 ANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
            +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           +K             ++Y    A A EI  + ++E SA     ++  F     +I+  + 
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 175 SQPSMNNAR 183
            QP+    R
Sbjct: 179 PQPTRQQKR 187

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG K DL  +
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 157
                         VSY+     A +IG   ++E SA  S N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   YI T   +F    V  DG+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           F  +    Y      ++ + V    SF NV ++W+ EI R        +LVG + DL  +
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLRED 139
Query: 129 ------------KVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF-MAMAASIK 170
                       K V  E AK  A+EI    ++E SA    N+++ F  A+ A I+
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 35/187 (18%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  ---RFR------TITSSY-----YRG-----AHGIIIVYDVTDQESFNNVK-QWLNEIDR 108
              R R      T+  +Y      RG     A   +I + +    SF NV+ +W  E+ R
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 109 YASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDS 155
           +   N   +LVG K DL  +K             ++Y    A A EIG + ++E SA   
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 156 TNVEQAF 162
             ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 21  KSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
           KS L+LRF   ++ ++YI TI   ++ + +  D     LQI DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  AHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLTANKVVSYETAKA 138
            H  I+V+ VT ++S   +      I +   + +++  +LVGNKCD T  +V + E A+A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQA 138
Query: 139 FADEIGIPFMETSAKDSTNVEQAFMAM 165
            A E    FMETSAK + NV++ F  +
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L++++L+GD GVGK+ L   FA     + +   +G D   RT+  DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68  ERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCD 124
           E+     S  S  +G    +IVY + D+ SF +  +   ++ R + +D+V  +LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
           L   + VS E  +A A      F+ETSA    NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EI  + ++E SA     ++  F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  ++    V  D K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 128 NK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
           +K             ++Y    A A EI  + ++E SA     ++  F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 124
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL 125
            +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG K DL
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDL 139

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 71
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA 152
                         +SYE   A A ++G   ++E SA
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 123
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 125
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 132
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 70
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA 152
                         +SYE   A A ++G   ++E SA
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 125
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 87
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G K DL  +
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 129 ------------KVVSYETAKAFADEIGIP-FMETSA 152
                         +SYE   A A ++G   ++E SA
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 126
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL 125
            +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG K DL
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDL 138

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 124
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNK 122
             G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVGNK
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNK 122
             G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKC 123
             Q+  R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK 
Sbjct: 62  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 178
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+ +
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 61
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKC 123
             Q+  R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK 
Sbjct: 62  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNK 122
             G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVGNK
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +     Y+ T+  ++ + TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+  +  ++ + TV   G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           ++K+LL+G  GVGKS L   F    D    E+   T       R++  DG+   L ++D 
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 56
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKC 123
             Q+  R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK 
Sbjct: 57  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
           ++++LIG+ GVGKS L   FA   DS ++S    +G D   RT+  DG++   I L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNK 122
             G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 126 ----------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                        K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  + +   Y+ T+  ++ + TV   G+   L ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDD 122
Query: 126 ---------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 162
                       K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 9/169 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIKLQIW--DTA 65
           K+ ++G++ VGKS L+  F      +++ Y  T GV+  +  V     T+ ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN---VNKLLVGNK 122
           G + ++   S Y+ G +  I+V+DV+  ESF + K W   +     D    +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 123 CDLTANK-VVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAMAASI 169
            DL   +  V  + A+ +A    + F + SA     + +  F+++A + 
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +   TIKL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDL 125
           RFR++   Y RG   I+ + D  DQE     K  L N +D+     +  L++GNK DL
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +   TIKL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDL 125
           RFR++   Y RG   I+ + D  DQE     K  L N +D+     +  L++GNK DL
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R V +   TIK  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDL 125
           RFR++   Y RG + I+ + D  D+E     +  L N +D+     +  L++GNK DL
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 377
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFAD---DSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           D +FK++L+G+SGVGKS L   F     DS  E        + +I   +++   +   IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 63  ---DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLL 118
              D  G  R   + +         +IV+ VTD+ SF+ V + L  +       ++  +L
Sbjct: 81  EQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           VGNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 68
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 67
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 125

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFAD---DSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           D +FK++L+G+SGVGKS L   F     D+  E   S    + +I   +++   I   IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGN 121
           +      +  +     +     +IV+ VTD+ SF+ V + L  +       ++  +LVGN
Sbjct: 70  EQGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 127
Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           K DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      I + I TIG  F + TV+   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDL 125
           R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 113

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK++L+G+SGVGKS L   F       ++      D   R +  D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68  -ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDL 125
            +    +     +     +IV+ VTD+ SF+ V + L  +       ++  +LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L +      I + I TIG  F + TV+   K I   +WD  GQ+R
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDL 125
            R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L +G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
            R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIFANKQDL 113

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L +      I + I TIG  F + TV+   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDL 125
           R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 58
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 116

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 57
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I T+G  F + TV    K +K  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 68
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVGNKCDL 125
           + R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 220
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           + R +   Y++   G+I V D  D+E  N  ++ L  +   A D +     L+  NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQDL 278

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           + R +   Y++   G+I V D  D+E  N  ++ L  +   A D +     L+  NK DL
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQDL 113

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           + R +   Y++   G+I V D  D+E  N  ++ L  +   A D +     L+  NK DL
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQDL 130

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 71
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           + R +   Y++   G+I V D  D+E  N  ++ L  +   A D +     L+  NK DL
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQDL 129

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  I++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 129

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
             R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           R R +   Y++   G+I V D  D+E    V   L ++     D +     LL  NK DL
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKM--LLVDELRDAVLLLFANKQDL 130
Query: 126 TANKVVSYETAK 137
                +S  T K
Sbjct: 131 PNAMAISEMTDK 142

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           L ++G  G GKS L ++F    +I  Y   +   +       D + + L++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 71  RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD---NVNKLLVGNKCDLTA 127
           R     Y   AH  ++VY V  ++SF++   +L  +  +A +   ++  LL+GNK D+  
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 128 NKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAF 162
            + V+     A A   G  F E SA  D  +V+  F
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDLTA 127
           + R +   YY+    II V D  D++     ++ L + ++     N   L+  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 128 NKVVSYETAK 137
              +S  T K
Sbjct: 133 AMSISEVTEK 142

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVE--FRNISFTVWDVGGQDK 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDL 125
            R +   YY    G+I V D  D+E  ++ ++ L+  I+     +   L+  NK DL
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGLD 57
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
           + R +   Y++   G+I V D  D+E  N  ++ L  +   A D +     L+  NK DL
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM--LAEDELRDAVLLVFANKQDL 115

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 23/175 (13%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV---GNKCDL 125
             R     YY     +I V D  D++     K  L  +     + + K ++    NK D+
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 115
Query: 126 TANKVVSYETAKAFADEIGIP--------FMETSAKDSTNVEQAFMAMAASIKDR 172
                    T    A+ +G+P          +TSA   T +++A   +  ++K R
Sbjct: 116 EQAM-----TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + +LL++G    GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCD 124
           +  R+   +Y+    G+I V D  D++   + ++ L  +   +R A   +  L+  NK D
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQD 113
Query: 125 L 125
           L
Sbjct: 114 L 114

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 69  RFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNE 105
           + R +   Y++   G+I V D  D    QES + +++ L E
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNE 105
           + R +   Y++   G+I V D  D+    E+ + + + LNE
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L +      I + I TIG  F +  V+     I   +WD  GQ+R
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQY--CNISFTVWDVGGQDR 73
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
            R++   YY    G+I V D  D+    E+   +++ LNE D     N   L+  NK DL
Sbjct: 74  IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE-DELC--NAAWLVFANKQDL 130

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++LL+G    GK+ LL + A +  I     T G  F I++V+  G   KL +WD  
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIG 69
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 101
           GQ + R    SY+     +I V D  D++ F    Q
Sbjct: 70  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++LL+G    GK+ LL + A +  I     T G  F I++V+  G   KL +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIG 68
Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 101
           GQ + R    SY+     +I V D  D++ F    Q
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 10  KLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
           KL ++G++G GK+ LL  L     S +    +T+G+D K   I+  ++  + + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           AG+E F +    +       + VYD++  Q   +  K WL  I   AS +   +LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 124 DLT---ANKVVSYETAKAFADEIGIP 146
           D++     K    +  K   ++ G P
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGFP 146

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 10  KLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
           KL ++G++G GK+ LL  L     S +    +T+G+D K   I+  ++  + + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           AG+E F +    +       + VYD++  Q   +  K WL  I   AS +   +LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 124 DLT---ANKVVSYETAKAFADEIGIP 146
           D++     K    +  K   ++ G P
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGFP 148

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV---GNKCDL 125
             R     YY     +I V D  D++     K  L  +     + + K ++    NK D+
Sbjct: 60  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 117
Query: 126 TANKVVSYETAKAFADEIGIPFM--------ETSAKDSTNVEQAFMAMAASIK 170
                    T+   A+ +G+P +        +TSA   T +++A   +  ++K
Sbjct: 118 EQAM-----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GK+ LL + A +  I     T G  F I++V+  G   KL +WD  GQ +
Sbjct: 6   RILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 101
            R    SY+     +I V D  D++ F    Q
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 20  GKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
           GK+ +L +F  +  +++   T+G  F I+T+E  G   KL IWD  GQ+  R+   +Y+ 
Sbjct: 30  GKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 80  GAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
              G+I V D  D++   + ++ L  +   +R A   +  L+  NK DL
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL--LIFANKQDL 131

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G   
Sbjct: 9   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV-GNKCDLTAN 128
            R     YY     +I V D  D++     K  L             L+V  NK D    
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXE-- 121
Query: 129 KVVSYETAKAFADEIGIPFM--------ETSAKDSTNVEQAFMAMAASIKDR 172
                 T+   A+ +G+P +        +TSA   T +++A   +  ++K R
Sbjct: 122 ---QAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F  +  + +   TIG + +   V    K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCD-- 124
            R+  ++YY     II+V D  D+E     K+ L  +   A +++ K   L+  NK D  
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM--LAHEDLRKAAVLIFANKQDMK 130
Query: 125 --LTANKVVSYETAKAFADE 142
             +TA ++  Y T  +  D 
Sbjct: 131 GCMTAAEISKYLTLSSIKDH 150

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN 104
             R     YY     +I V D TD++  +   + L+
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++LL+G    GK+ LL + A +  I     T G  F I++V+  G   KL +WD  G  +
Sbjct: 6   RILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 101
            R    SY+     +I V D  D++ F    Q
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +   +       +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
            R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K   L+  NK D+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 134

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +   +       +  +WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
            R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K   L+  NK D+
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 135

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +    E      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
            R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K   L+  NK D+
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G    GK+ +L +F+ +  + +   TIG + +    E      +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLVGNKCDL 125
            R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K   L+  NK D+
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL---LVGNKCDL 125
                 + +   A  +I V+ + D+ SF  V +   ++     +    L   LVG +  +
Sbjct: 64  ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           +A+  +VV    A+A  AD     + ET A    NV++ F  +A  +
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL---LVGNKCDL 125
                 + +   A  +I V+ + D+ SF  V +   ++     +    L   LVG +  +
Sbjct: 64  ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 126 TAN--KVVSYETAKAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           +A+  +VV    A+A  AD     + ET A    NV++ F  +A  +
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-135
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-132
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-129
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-129
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-128
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-128
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-128
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-127
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-126
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-126
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-126
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-125
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-125
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-125
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-125
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-124
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-124
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-124
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-123
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-122
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-122
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-122
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-122
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-121
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-121
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-120
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-120
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-120
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-119
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-119
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-119
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-119
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-117
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-116
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-115
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-115
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-114
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-113
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-113
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-113
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-111
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-110
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-105
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-102
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-102
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-101
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-99
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	9e-93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-92
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-90
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	8e-90
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	6e-86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-82
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-81
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-75
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-71
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-60
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-56
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-56
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-55
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-54
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-53
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-52
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-50
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	8e-50
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-47
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-45
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-30
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-26
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-21
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-20
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-20
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-20
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	7e-20
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-18
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-17
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-17
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-15
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-15
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-15
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-15
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-14
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	4e-06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	6e-06
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	3e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	5e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  375 bits (964), Expect = e-135
 Identities = 142/205 (69%), Positives = 159/205 (77%), Gaps = 4/205 (1%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ---- 176
           NKCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M+ Q    
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180

Query: 177 PSMNNARPPTVQIKGQPVAQKSGCC 201
            +        V +KGQ +    GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  368 bits (947), Expect = e-132
 Identities = 154/188 (81%), Positives = 165/188 (87%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +  
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188

Query: 181 NARPPTVQ 188
            A    V+
Sbjct: 189 GAEKSNVK 196

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  361 bits (928), Expect = e-129
 Identities = 92/201 (45%), Positives = 134/201 (66%), Gaps = 6/201 (2%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +  +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAG ER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM------AS 175
           KCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M      A 
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 176 QPSMNNARPPTVQIKGQPVAQ 196
                  + P +  +  P  Q
Sbjct: 182 PAVTGAKQGPQLTDQQAPPHQ 202

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  359 bits (924), Expect = e-129
 Identities = 104/182 (57%), Positives = 139/182 (76%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M       
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

Query: 181 NA 182
            A
Sbjct: 181 AA 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  358 bits (921), Expect = e-128
 Identities = 152/174 (87%), Positives = 161/174 (92%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 26  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG
Sbjct: 86  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           NKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  358 bits (921), Expect = e-128
 Identities = 98/202 (48%), Positives = 139/202 (68%), Gaps = 1/202 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
               YD + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ
Sbjct: 13  NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQ 72

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           +WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVG
Sbjct: 73  LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S   + 
Sbjct: 133 NKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVG 191

Query: 181 NARPPTVQIKGQPVAQKSGCCS 202
                   I     +  S   +
Sbjct: 192 VGNGKEGNISINSGSGNSSKSN 213

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  357 bits (918), Expect = e-128
 Identities = 86/174 (49%), Positives = 128/174 (73%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
               +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQ
Sbjct: 16  FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVG
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 174
           NKCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  356 bits (915), Expect = e-127
 Identities = 106/180 (58%), Positives = 134/180 (74%), Gaps = 1/180 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 120

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +        +  
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  353 bits (908), Expect = e-126
 Identities = 87/179 (48%), Positives = 127/179 (70%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNA 182
           DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +         +NN 
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  352 bits (905), Expect = e-126
 Identities = 87/175 (49%), Positives = 126/175 (72%), Gaps = 1/175 (0%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIW 62
            YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + ++ DG  +KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
            D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K R    P
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  352 bits (905), Expect = e-126
 Identities = 88/173 (50%), Positives = 124/173 (71%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +    DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQ
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVG
Sbjct: 75  IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           NKCDL   +VV  E  +  AD++G  F E SAK++ NV+Q F  +   I ++M
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  351 bits (902), Expect = e-125
 Identities = 79/175 (45%), Positives = 118/175 (67%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + +Y+++FK++LIG+SGVGK+ LL RF  + +     +TIGV+F  RTV      +K QI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           K DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  351 bits (902), Expect = e-125
 Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
            + +YD+LFKL+L+GD+ VGK+C++ RF   ++ E   STIGVDF ++T+E  GK +KLQ
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+G
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141

Query: 121 NKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           NK DL+  + VS   A++ A+   I   +ETSAKDS+NVE+AF+ +A  +  R   
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  349 bits (899), Expect = e-125
 Identities = 83/174 (47%), Positives = 124/174 (71%), Gaps = 1/174 (0%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
                D+  ++++IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

Query: 121 NKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           NK D   ++ ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  349 bits (899), Expect = e-125
 Identities = 90/175 (51%), Positives = 122/175 (69%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           + P   YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQ
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+G
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           NK DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I  ++  
Sbjct: 134 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  348 bits (895), Expect = e-124
 Identities = 82/176 (46%), Positives = 118/176 (67%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+  YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           NK DL A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S 
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  348 bits (894), Expect = e-124
 Identities = 90/169 (53%), Positives = 120/169 (71%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
            + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK Q
Sbjct: 22  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG
Sbjct: 82  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  349 bits (897), Expect = e-124
 Identities = 94/217 (43%), Positives = 126/217 (58%), Gaps = 17/217 (7%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
             +YD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT+E +GK IK QI
Sbjct: 7   GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQER+R ITS+YYRGA G +IVYD++   S+ N   WL+E+   A DNV   L+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP---- 177
           K DL   + V  E +K FA E  + F ETSA +S NV++AF  +  +I  +++       
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

Query: 178 ---------SMNNARPPTVQIKGQPVAQK----SGCC 201
                      +    PT+ +   P   K    + CC
Sbjct: 187 DSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  345 bits (887), Expect = e-123
 Identities = 90/178 (50%), Positives = 124/178 (69%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNA 182
           L   + V  + A+AFA++  + F+ETSA DSTNVE+AF  +   I   ++ +   + A
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 179

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  343 bits (883), Expect = e-122
 Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 2/187 (1%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+ +     K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL 
Sbjct: 8   MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLV 119
           IWDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +  +LV
Sbjct: 68  IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 127

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
           GNK D   N+ V       FA +  + F+E SAK    V+ AF  +   I        S 
Sbjct: 128 GNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESE 186

Query: 180 NNARPPT 186
           N    P+
Sbjct: 187 NQNSGPS 193

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  343 bits (883), Expect = e-122
 Identities = 82/175 (46%), Positives = 116/175 (66%)

Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
              D+LFK L+IG +G GKSCLL +F ++ + +    TIGV+F  R V   GKT+KLQIW
Sbjct: 20  IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GNK
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
            DL   + V++  A  FA E  + F+ETSA    NVE+AF+  A +I +++ S  
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  343 bits (882), Expect = e-122
 Identities = 71/198 (35%), Positives = 112/198 (56%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
                FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAG ERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNAR 183
           DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q       
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191

Query: 184 PPTVQIKGQPVAQKSGCC 201
                 K Q      G C
Sbjct: 192 IDIKLEKPQEQPVSEGGC 209

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  343 bits (881), Expect = e-122
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 4/206 (1%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNK 116
           IWDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           +++GNK DL   +V +         +  IP+ ETSAK++ NVEQAF  +A +   +    
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 177 PSMNNARPPTVQIKGQPVAQKSGCCS 202
              N    P    K +     +  CS
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCS 206

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  339 bits (873), Expect = e-121
 Identities = 95/170 (55%), Positives = 133/170 (78%), Gaps = 1/170 (0%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
           GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGNK D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
              +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 121 E-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  339 bits (872), Expect = e-121
 Identities = 83/170 (48%), Positives = 112/170 (65%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
               Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           IWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           NK DL A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I 
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  338 bits (870), Expect = e-120
 Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 6/177 (3%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +      +K++L GD+ VGKS  L+R   + + E+  +T+GVDF+++T+  DG+   LQ+
Sbjct: 22  SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A + V  +LVGN
Sbjct: 82  WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141

Query: 122 KCDL------TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           K D+         K V     +  A   G  F ETSAKD +N+ +A + +A  +K R
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  336 bits (864), Expect = e-120
 Identities = 61/167 (36%), Positives = 105/167 (62%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
             Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGNK D
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 171
           L   + VS + A+++A+ +G     TSAK +  +E+ F+ +   + +
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  336 bits (863), Expect = e-120
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
            +   K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQE F  IT +YYRGA   ++V+  TD+ESF  +  W  ++      ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKID 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L  +  +  E A+  A  + + F  TS K+  NV + F  +A     +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  337 bits (866), Expect = e-119
 Identities = 77/198 (38%), Positives = 122/198 (61%), Gaps = 12/198 (6%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK------ 55
           + +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V  + +      
Sbjct: 19  SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78

Query: 56  ----TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA- 110
                + LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A 
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138

Query: 111 SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            +N + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I 
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 198

Query: 171 DRMASQPSMNNARPPTVQ 188
            RM  Q       P TV 
Sbjct: 199 KRM-EQCVEKTQIPDTVN 215

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  335 bits (862), Expect = e-119
 Identities = 71/188 (37%), Positives = 118/188 (62%), Gaps = 11/188 (5%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-------- 53
           + +YDYL K L +GDSGVGK+ +L ++ D  +   +I+T+G+DF+ + V           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64

Query: 54  --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA- 110
             G+ I LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124

Query: 111 SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           S+N + +L GNK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I 
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

Query: 171 DRMASQPS 178
            RM     
Sbjct: 185 KRMERSVD 192

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  335 bits (861), Expect = e-119
 Identities = 74/174 (42%), Positives = 106/174 (60%)

Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
                  KL+L+GD G GKS L+LRF  D ++E   STIG  F  +T+  +  T+K +IW
Sbjct: 7   GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQER+ ++   YYRGA   IIV+DVT+Q SF   K+W+ E+    + N+   L GNK
Sbjct: 67  DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
            DL   + V+ E A+ +A E G+ FMETSAK +TNV++ F  +A  +     ++
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  334 bits (859), Expect = e-119
 Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 5/174 (2%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
                 +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+
Sbjct: 14  RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73

Query: 62  WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLV 119
           WDTAGQERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++   N + ++LV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 170
           GNKCDL +   V  + A+ FAD   +P  ETSAK   D+ +VE  FM +A  +K
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  331 bits (851), Expect = e-117
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 2/196 (1%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV-DFKIRTVEQDGKTIKLQIW 62
             +  +K+ LIGD GVGK+  + R  D  + ++Y +T+G  +  +  ++  G  IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQE+   +   YY GA G I+ +DVT + +  N+ +W+ E      +    ++  NK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP-SMNN 181
            D+   + +S +            + E SAK + N    F+ +A     R      S  N
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

Query: 182 ARPPTVQIKGQPVAQK 197
             P  V        + 
Sbjct: 187 LEPTEVNYDYHSPEES 202

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  326 bits (839), Expect = e-116
 Identities = 66/175 (37%), Positives = 102/175 (58%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
                   K+ L+GD+GVGKS ++ RF  D +  +   TIG  F  +TV    +  K  I
Sbjct: 17  RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERF ++   YYRG+   +IVYD+T Q+SF  +K+W+ E+  +  +N+   + GN
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           KCDL+  + V  + AK +A+ IG   +ETSAK++ N+E+ F  ++  I      +
Sbjct: 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  323 bits (830), Expect = e-115
 Identities = 67/162 (41%), Positives = 102/162 (62%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  322 bits (829), Expect = e-115
 Identities = 78/164 (47%), Positives = 107/164 (65%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
             FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
             + V ++ A+++AD+  + FMETSAK S NV + FMA+A  + 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  322 bits (828), Expect = e-114
 Identities = 67/166 (40%), Positives = 108/166 (65%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
                FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +T++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR++  SY R +   ++VYD+T+  SF+   +W++++      +V  +LVGNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL+  + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  320 bits (823), Expect = e-113
 Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 6/175 (3%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
               LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLV 119
           TAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 120 GNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           GNK D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF      +    
Sbjct: 123 GNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  320 bits (822), Expect = e-113
 Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 7/182 (3%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKL 59
           M+     + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG K   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVN 115
           Q+WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+    +   
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 116 KLLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 173
            +++GNK D   + K+VS ++A+  A  +G IP   TSAK++ NV+ AF  +A S   + 
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 174 AS 175
            +
Sbjct: 181 QA 182

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  319 bits (819), Expect = e-113
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWD 63
           +    K++++GD   GK+ L   FA +++ + Y  TIG+DF +R +   G   + LQIWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVG 120
             GQ     +   Y  GA G+++VYD+T+ +SF N++ W   + +    +       LVG
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           NK DL   + +  E    F  E G      SAK   +V   F  +AA I
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  317 bits (814), Expect = e-111
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 4/198 (2%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
              E    FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  
Sbjct: 8   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 67

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
           +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L G
Sbjct: 68  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCG 126

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NK D+   KV     +  F  +  + + + SAK + N E+ F+ +A  +      +    
Sbjct: 127 NKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 184

Query: 181 NA-RPPTVQIKGQPVAQK 197
            A  PP V +     AQ 
Sbjct: 185 PALAPPEVVMDPALAAQY 202

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  312 bits (801), Expect = e-110
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 9/190 (4%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIK 58
           ++       K+ ++G++ VGKS L+  F      +++ Y  T GV+  +  V     T+ 
Sbjct: 13  IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72

Query: 59  LQIW--DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDN 113
           ++++  DTAG + ++   S Y+ G +  I+V+DV+  ESF + K W   +          
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132

Query: 114 VNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAK-DSTNVEQAFMAMAASIKD 171
           +  +LV NK DL   +  V  + A+ +A    + F + SA     + +  F+++A +   
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

Query: 172 RMASQPSMNN 181
               + +   
Sbjct: 193 NYEDKVAAFQ 202

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  300 bits (770), Expect = e-105
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 2/179 (1%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
             + D +FK++L+G+SGVGKS L   F       ++      D   R +  D + + L +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 62  WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLV 119
           +D   Q      +     +     +IV+ VTD+ SF+ V + L  +       ++  +LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 178
           GNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R     +
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  294 bits (754), Expect = e-102
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 5/199 (2%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
               L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILD 68

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNK 122
           TAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNA 182
            DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R        N 
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNG 188

Query: 183 RPPTVQIKGQPVAQKSGCC 201
           +      K      +  CC
Sbjct: 189 KKKR---KSLAKRIRERCC 204

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  292 bits (749), Expect = e-102
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+P      KL+++G  GVGKS L ++F    ++  Y  TI  D   +    DG   +L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLV 119
           I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +LV
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
           GNK DL + + V    A AF     + + E SAK   NV++AF  +  +++         
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY------Q 174

Query: 180 NNARPPT 186
               PP+
Sbjct: 175 EQELPPS 181

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  288 bits (739), Expect = e-101
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK++L+G+SGVGKS L   F       ++      D   R +  D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDL 125
                 +     +     +IV+ VTD+ SF+ V + L  +       ++  +LVGNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  285 bits (731), Expect = 2e-99
 Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 2/176 (1%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +     L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 70

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 120
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVG
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           NK DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R    
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  282 bits (725), Expect = 2e-98
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 9/202 (4%)

Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           PE    +++++ G  GVGKS L+LRF   ++ ++YI TI   ++ + +  D     LQI 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVG 120
           DT G  +F  +        H  I+V+ VT ++S   +      I +   + +++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 180
           NKCD T  + V    A+A A E    FMETSAK + NV++ F  +      R  S     
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG 180

Query: 181 NARPPTVQIKGQPVAQKSGCCS 202
                    K +   +  G C+
Sbjct: 181 KRSG-----KQKRTDRVKGKCT 197

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  281 bits (720), Expect = 1e-97
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 40/209 (19%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIK----- 58
           E    +K +L+G+S VGKS ++LR   D++ E+  +TIG  F    V  +   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 59  --------------------------------LQIWDTAGQERFRTITSSYYRGAHGIII 86
                                             IWDTAGQER+ +I   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 87  VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP 146
           V+D+++  + +  K W+N++    S N   +LV NK D      V     + +A +  + 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLL 179

Query: 147 FMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           F++TSAK  TN++  F  +A  I   + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  279 bits (715), Expect = 3e-97
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +  E    +KL+++GD GVGKS L ++F    +++ Y  TI  D  ++  E D +   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 119
           + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 172
            NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+ +
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  278 bits (713), Expect = 4e-97
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T    ++ + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  275 bits (705), Expect = 1e-95
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M        K+ ++G   VGKS L ++F +  +++SY  TI   F  + +  +G+   LQ
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQ 57

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLV 119
           + DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++        +  +LV
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLV 117

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 179
           GNK DL   +V+SYE  KA A+     F+E+SAK++      F  +    +    +    
Sbjct: 118 GNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177

Query: 180 NNA 182
            ++
Sbjct: 178 KSS 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  272 bits (697), Expect = 1e-94
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++ + +  D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I       +++  +LVGNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
            ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  272 bits (698), Expect = 3e-94
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
                K++++G   VGK+ L  +F +  + E Y  T+   +  + V        L + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDT 79

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKC 123
           AGQ+ +  +  S+  G HG ++VY VT   SF  ++    ++   +    V  +LVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
           DL+  + V     K  A+  G  FME+SA+++   +  F  +   I     S  
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  270 bits (693), Expect = 5e-94
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           ++K+LL+G  GVGKS L   F             G  +  R++  DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLT 126
           +  R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  269 bits (691), Expect = 9e-94
 Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   ++IE Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
           +F ++   Y +   G I+VY + +Q+SF ++K   ++I R    + V  +LVGNK DL +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS    +A A+E G PFMETSAK  T V++ F  +   + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  269 bits (690), Expect = 3e-93
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTV 187
           ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+            +    
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKK-- 180

Query: 188 QIKGQPVAQKSGCCS 202
                   +    C 
Sbjct: 181 --------KSKTKCV 187

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  267 bits (685), Expect = 9e-93
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 4/172 (2%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L++++L+GD GVGK+ L   FA     + +   +G D   RT+  DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 68  ERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCD 124
           E+     S  S  +G    +IVY + D+ SF +  +   ++ R + +D+V  +LVGNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           L   + VS E  +A A      F+ETSA    NV + F  +   ++ R    
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  267 bits (685), Expect = 2e-92
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++  +  +I R   SD+V  +LVGNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 178
            + V  + A   A   GIPF+ETSAK    VE AF  +   I+     + +
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  265 bits (679), Expect = 6e-92
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++    TI   ++ + V  DG+T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  264 bits (676), Expect = 6e-91
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKT---I 57
           +   +  ++++LIG+ GVGKS L   FA      +S    +G D   RT+  DG++   I
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNK 116
            L +W+  G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           +LVGNK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

Query: 177 P 177
            
Sbjct: 209 E 209

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  262 bits (671), Expect = 8e-91
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT-- 126
           RF ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 127 -ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
              + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  260 bits (667), Expect = 4e-90
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 128 NKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIK 170
            +VV  E  +  A +     F+E+SAK   NV + F  +   I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  261 bits (668), Expect = 8e-90
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M    +   KL + G +GVGKS L++RF    +I  Y  T+   ++      D + + ++
Sbjct: 23  MAKSAEV--KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSME 79

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLV 119
           I DTAGQE        + R   G ++VYD+TD+ SF  V    N +D      NV  +LV
Sbjct: 80  ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAMAASIKDRMASQ 176
           GNK DL  ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R   Q
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  251 bits (642), Expect = 6e-86
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKT---IKLQ 60
               ++++LIG+ GVGKS L   FA      +S    +G D   RT+  DG++   I L 
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLV 119
           +W+  G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LV
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 120 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 178
           GNK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+  
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  242 bits (619), Expect = 1e-82
 Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIE--SYISTIGVDFKIRTVEQDGK---TIKLQIWD 63
            KL+++G++G GK+ LL +       +     +T+G+D K   ++   K    + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNK 122
            AG+E F +    +       + VYD++  ++  + +K WL  I   AS +   +LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 123 CDLTANK---VVSYETAKAFADEIGIPF-METSAKDSTNVEQAFMAMAASIKDRMASQ 176
            D++  K       +  K   ++ G P   +    ++T    A   +  +I +   + 
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  239 bits (613), Expect = 1e-81
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
                L ++G  G GKS L ++F    +I  Y   +   +       D + + L++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTA 77

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD---NVNKLLVGNK 122
             +  R     Y   AH  ++VY V  ++SF++   +L  +  +A +   ++  LL+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAMAASIK 170
            D+   + V+     A A   G  F E SA     +V+  F       +
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  237 bits (607), Expect = 1e-80
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ ++G+   GKS L+ R+   +Y++   S  G  FK + +  DG++  L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
             +     +      ++ V+ + D+ SF  V  +   +  +  +  V  +LVG +  ++A
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 128 N--KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 173
              +V+    A+  + ++    + ET A    NVE+ F  +A  +    
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  224 bits (573), Expect = 1e-75
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             +L ++GD+  GKS L+ RF   SY +    T    +K + +  DG+T  + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLLVG--NK 122
              +     +   A  +I V+ + D+ SF  V +   ++          +   LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 123 CDLTANKVVSYETAKAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
              ++ +VV    A+A  AD     + ET A    NV++ F  +A  +      Q
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  225 bits (574), Expect = 2e-71
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 15/193 (7%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE--------QD 53
              +    K+ LIGD   GK+ LL +   +++      T G++   +            +
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 54  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN 113
            K      WD  GQE        +   +   +++ D     + +N   WL  I++Y   +
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKS 151

Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
              ++V NK D   +  +  +        I   F   S K+   VE    ++ +++   +
Sbjct: 152 P-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV---L 207

Query: 174 ASQPSMNNARPPT 186
                      P+
Sbjct: 208 HPDSIYGTPLAPS 220

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  186 bits (475), Expect = 1e-60
 Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
                   K++++GD  VGK+CLLL F+      +Y+ T+  +F    ++   +   L +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHL 75

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 120
           WDTAGQE +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVG 134

Query: 121 NKCDL--TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDR 172
            K DL    +  V+ +       ++G + ++E S+     + + F  ++     ++
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  174 bits (443), Expect = 6e-56
 Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 19/181 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K + +GD  VGK+CLL+ +  +++   Y+ T+  +F    V  +G T+ L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    YRGA   I+ + +  + S+ NV  +W+ E+  YA   V  +LVG K DL  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126

Query: 126 --------TANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
                        ++    +     IG P ++E S+K   NV+  F A       R+  Q
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI-----RVVLQ 181

Query: 177 P 177
           P
Sbjct: 182 P 182

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  175 bits (445), Expect = 8e-56
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++L+GD G GK+ LL+ FAD ++ ESY  T+   + +  ++  GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +    V  ++VG K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDR 172
                        + V+Y   +  A  +G + ++E SA+   NV   F  A   ++  R
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  173 bits (441), Expect = 2e-55
 Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 17/182 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  +E DGK ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y     I++ + V   +S  N+  +W+ E+  +   NV  +LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMA 174
                       + V  +  +A A  I    ++E SAK    V + F  A  A+++ R  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204

Query: 175 SQ 176
           SQ
Sbjct: 205 SQ 206

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  171 bits (436), Expect = 2e-54
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 18/186 (9%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           M+P  +   K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELS 79

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLV 119
           +WDT+G   +  +    Y  +  ++I +D++  E+ ++V  +W  EI  +   N   LLV
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLV 138

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MA 164
           G K DL                 VSY+     A +IG   ++E SA  S N V   F +A
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

Query: 165 MAASIK 170
             A + 
Sbjct: 199 TLACVN 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  169 bits (429), Expect = 2e-53
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 17/180 (9%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
               KL+++GD   GK+CLL+ F+ D + E Y+ T+  +  I  +E DGK ++L +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCD 124
           GQE +  +    Y     I++ + +   +S  N+  +W  E+  +   NV  +LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKD 140

Query: 125 L------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 170
           L               + V  E  +  A+ I    ++E SAK    V + F MA  A ++
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  165 bits (419), Expect = 6e-52
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 24/204 (11%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K + +GD  VGK+C+L+ +  + +   YI T+  +F    V  DG+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA 127
            +  +    YRGA   ++ + +  + S+ NV  +W+ E+ R+ + NV  +LVG K DL  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVGTKLDLRD 127

Query: 128 N--------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDRMASQP 177
           +         V++    +    +IG   ++E S+K   NV+  F  A+   ++     + 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187

Query: 178 SMNNARPPTVQIKGQPVAQKSGCC 201
                             ++SGC 
Sbjct: 188 PRRRKNH-----------RRSGCS 200

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  165 bits (419), Expect = 2e-51
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 66/221 (29%)

Query: 15  GDSGVGKSCLLLRF---ADDSYIESYISTIG-VDFKIRTVE--------------QDGKT 56
           G  G+GKSCL  RF   + D +   + S +   DF  R V               +D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  IKLQIW-------DTAGQERFRTITSSYYRGA---------------------------- 81
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------HGIIIVYDVT--DQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANK 129
                     G ++  DV+     +F++  ++++ +    +      ++V  KCD    +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            +      A + +  +  +ETSA+ + NV+ AF  +   I 
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLID 254

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  160 bits (406), Expect = 2e-50
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  ++   + E D + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y  +  ++I +D++  E+ ++V  +W  EI  +   N   LLVG K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MAMAASIK 170
                         VSY+     A +IG   ++E SA  S N V   F +A  A + 
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  159 bits (404), Expect = 8e-50
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRD 148

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                          ++Y    A A EIG + ++E SA     ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  152 bits (386), Expect = 2e-47
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL--- 125
           +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 124

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                         ++Y    A A EIG + ++E SA     ++  F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  152 bits (387), Expect = 3e-47
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K +L+GD  VGK+ L++ +  + Y   YI T   D     V  DG+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL--- 125
           F  +    Y      ++ + V    SF NV  +W+ EI  +       +LVG + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLRED 139

Query: 126 ---------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
                       K V  E AK  A+EI    ++E SA    N+++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  150 bits (381), Expect = 3e-46
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+L+GD   GK+ +L   A D Y E+Y+ T+  ++    +E + + ++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDL-- 125
            +  +    Y  +  +++ +D++  E+ ++  K+W  EI  Y   +   LL+G K DL  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145

Query: 126 ----------TANKVVSYETAKAFADEIG-IPFMETSAKDS-TNVEQAF 162
                          +SYE   A A ++G   ++E SA  S  ++   F
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  148 bits (375), Expect = 1e-45
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 16/176 (9%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
            +     + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L 
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 69

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLV 119
           ++DTAGQE +  +    Y      +I + V +  SF NVK +W+ E+  Y + NV  LL+
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLI 128

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 162
           G + DL               K +  E  +  A EIG   ++E SA     ++  F
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  111 bits (279), Expect = 7e-30
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 17/185 (9%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           ++     L K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLV 119
           +WDTAG E +  +    Y      +I + +    SF++V+  W  E+  +   N   +LV
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILV 265

Query: 120 GNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAM 165
           G K DL                 ++Y    A A EIG + ++E SA     ++  F  A+
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

Query: 166 AASIK 170
            A + 
Sbjct: 326 RAVLC 330

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 17/183 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFAD----------DSYIESYISTIGVDFKIRTVEQ-DGKTI 57
           FK++  G    GK+  L                S       T+  DF    + +  G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 58  KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK- 116
           +  ++   GQ  +        RG  GI+ V D        N +   N  +  A   +   
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 117 ---LLVG-NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
              +++  NK DL  + +           E   P +E  A +   V +    ++  +  R
Sbjct: 135 DVPIVIQVNKRDL-PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

Query: 173 MAS 175
           +A 
Sbjct: 194 VAG 196

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +   TIG    +  +       +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV-GNKCDL 125
             R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K  LL+  NK D+
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 129

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 177
               +   E ++      I           A     + Q    M + +K R+    
Sbjct: 130 -KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 85.3 bits (212), Expect = 4e-21
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G  F +R + +    + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L+ +        +  L++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL-P 137

Query: 128 NKVVSYETAKAFA-DEIG-----IPFMETSAKDSTNVEQAFMAMAASIKDR 172
             +   E  +      I            S K+  N++     +    K R
Sbjct: 138 GALDEKELIEKMNLSAIQDREICC--YSISCKEKDNIDITLQWLIQHSKSR 186

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 84.6 bits (210), Expect = 7e-21
 Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFA-DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
             +L +G    GK+ ++ +    ++  ++ + TIG  F I   +    ++   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLLVGNKCD 124
            R+R +   YY+    II V D +D+      K+ L+ +          +  L   NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L  + V S + ++    + I         + A     +++    +   I+  
Sbjct: 138 L-RDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 83.8 bits (208), Expect = 8e-21
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + + I TIG  F + TV    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV-GNKCD 124
             R     YY     +I V D  D++     K    E+     +   +   L+V  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFANKQD 119

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
           +    + S E A +     +        +TSA   T +++A   +  ++K R
Sbjct: 120 M-EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 20/184 (10%)

Query: 1   MNPEYDYLF-----KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK 55
               +  +F     ++L++G    GK+ +L +      I + I TIG  F + TVE   K
Sbjct: 17  RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG-EIVTTIPTIG--FNVETVEY--K 71

Query: 56  TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN 115
            I   +WD  GQ++ R +   Y++   G+I V D  D+E        L ++     D + 
Sbjct: 72  NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELR 129

Query: 116 K--LLV-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAAS 168
              LLV  NK D+  N +   E         +         T A   T +      ++  
Sbjct: 130 DAVLLVFANKQDM-PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHE 188

Query: 169 IKDR 172
           +  R
Sbjct: 189 LSKR 192

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 82.2 bits (204), Expect = 3e-20
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 56

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV-GNKCDL 125
            R +   Y++   G+I V D  D+E  N  ++   E+ R  +++  +   LLV  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQDL 113

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
             N + + E         +         T A     + +    ++  ++++
Sbjct: 114 -PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 82.3 bits (204), Expect = 4e-20
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 15/171 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV-GNKCDL 125
             R     YY     +I V D TD++  +   + L+ +     + +    LLV  NK D 
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM--LQEEELQDAALLVFANKQDQ 131

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
               + + E +K     E+       + +SA     + +    +   IK+ 
Sbjct: 132 -PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 81.9 bits (203), Expect = 7e-20
 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L R      + + + T+G    + T++   K I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV-GNKCD 124
             R     Y+     +I V D TD++     K    E+     ++  +   LL+  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLLIFANKQD 134

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
           L  +     E A+      I       +++S+K    + +    +   ++++
Sbjct: 135 L-PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 79.9 bits (198), Expect = 4e-19
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++LL+G    GK+ LL + A +        T G  F I++V+   +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV-GNKCDL 125
           + R    SY+     +I V D  D++ F    Q L E+     + ++   +L+  NK DL
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL--LEEEKLSCVPVLIFANKQDL 129

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
                 + E A+      I          SA     V+     +  ++  +
Sbjct: 130 -LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 79.2 bits (196), Expect = 6e-19
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +        T+G  F I+T+E   +  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV-GNKCD 124
             R+   +Y+    G+I V D  D++   + ++   E+     +       LL+  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAGATLLIFANKQD 130

Query: 125 LTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           L    +      +A   D I          SA    ++      +   I  R+
Sbjct: 131 L-PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 10  KLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           ++LL+G    GKS +          +      ST         +      +  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSSF-VNFQIWDFPG 78

Query: 67  QERFRTITS---SYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           Q  F   T      +RG   +I V D  D   E+   +   +++  +  + ++N  +  +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIH 137

Query: 122 KCDLTAN-----------KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 162
           K D  ++           +  + + A A  +++ + F  TS  D + + +AF
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAF 188

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +   TIG    +  +       +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV-GNKCDL 125
             R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K  LL+  NK D+
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDV 134

Query: 126 TANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASI 169
               +   E ++      I           A     + Q    M + +
Sbjct: 135 -KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 74.1 bits (183), Expect = 5e-17
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLL +G    GK+ LL    +D        T         +      IK   +D  G  +
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHIQ 79

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKLLVGNKCDL 125
            R +   Y+   +GI+ + D  D E F+  +    E+D   +     +V  +++GNK D 
Sbjct: 80  ARRLWKDYFPEVNGIVFLVDAADPERFDEARV---ELDALFNIAELKDVPFVILGNKIDA 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+ +G    GK+ LL    DD   +  + T+        +      +    +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHIQ 81

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKLLVGNKCDL 125
            R +  +Y    +GI+ + D  D E     K+   E+D   +D    NV  L++GNK D 
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKIDR 138

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.9 bits (181), Expect = 5e-16
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 24/190 (12%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAGQ 67
           KLLL+G SG GKS +       +Y       +G  +D +   +   G  + L +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGN-MTLNLWDCGGQ 62

Query: 68  ERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLVG 120
           + F            ++    +I V+DV   E   +++ +   +   R  S +    ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 121 NKCDLTANKVVS------YETAKAFADEIGIP---FMETSAKDSTNVEQAFMAMAASIKD 171
           +K DL              +     + E G P      TS  D +     + A +  +  
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESL----YKAWSQIVCS 178

Query: 172 RMASQPSMNN 181
            + +  +  +
Sbjct: 179 LIPNMSNHQS 188

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
            +++ G    GK+ LL     DS   + + +            D     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 70  FRTITSSYYR----GAHGIIIVYD-VTDQESFNNVKQWLNEI----DRYASDNVNKLLVG 120
            R   S Y +       G+I + D   D +      ++L +I    +    + ++ L+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 121 NKCDL 125
           NK +L
Sbjct: 164 NKSEL 168

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 71.1 bits (174), Expect = 5e-15
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 17/176 (9%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
                ++L++G    GK+ +L +      + + I TIG  F + TVE   K I   +WD 
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDV 216

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV-G 120
            GQ++ R +   Y++   G+I V D  D+E  N  ++   E+ R  +++  +   LLV  
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFA 273

Query: 121 NKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 172
           NK DL  N + + E         +         T A     + +    ++  ++++
Sbjct: 274 NKQDL-PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 69.4 bits (170), Expect = 6e-15
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQE 68
            +L +G    GK+ L +R     Y ++  ++I         +  + +   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 69  RFR-TITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEI--DRYASDNVNKLLV-GNKC 123
             R  +   +   A  ++ V D    Q    +V ++L ++  D  A  N   LL+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 124 DL 125
           D+
Sbjct: 126 DI 127

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +++ G    GK+ LL     DS   + + +            D     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 71  RTITSSYY----RGAHGIIIVYD-VTDQESFNNVKQWLNEI----DRYASDNVNKLLVGN 121
           R   S Y     +   G+I + D   D +      ++L +I    +    + ++ L+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 122 KCDL 125
           K +L
Sbjct: 129 KSEL 132

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 59.7 bits (144), Expect = 6e-11
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
           +LL+G    GKS  + +    +        +               I L + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59

Query: 71  R---TITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
                 +   ++    ++ V D  D+   +  N+   +    +  + ++N  ++ +K D 
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDG 118

Query: 126 TAN-----------KVVSYETAKAFADEIGIPFMETSAKDST 156
            +            +    E  +   D + + F  TS  D +
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 68/211 (32%)

Query: 11  LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI-----RTVEQDGKTIKLQIWDTA 65
           +L+ G  G GK+ + L       ++  +     DFKI     +        +++      
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNLKNCNSPETVLEML----- 202

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYAS-----DNVN-- 115
            Q+    I  ++   +      +    +   ++++  L  +     Y +      NV   
Sbjct: 203 -QKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 116 ----------KLLVGNKCDLTANK-----VVSYETAKAFADEIGIPFMETSAKD----ST 156
                     K+L+      T  K     + +  T     D   +       K       
Sbjct: 257 KAWNAFNLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 157 NV------EQA------FMAM-AASIKDRMA 174
           +        +        +++ A SI+D +A
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 34/146 (23%)

Query: 6   DYLFKLLLI-GDSGVGKSCLLLRFADDSYIESYISTIGVDF---KIRTVEQDGKTIKLQI 61
             LF  LL   +  V       +F ++    +Y       F    I+T ++         
Sbjct: 65  LRLFWTLLSKQEEMVQ------KFVEEVLRINY------KFLMSPIKTEQRQ-------- 104

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG- 120
             +     +       Y     +   Y+V+  + +  ++Q L E+    + NV  L+ G 
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRP--AKNV--LIDGV 158

Query: 121 ---NKCDLTANKVVSYETAKAFADEI 143
               K  +  +  +SY+       +I
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI 184

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 18/180 (10%)

Query: 11  LLLIGDSGVGKSCLLLRFAD-DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--- 66
           +++ G   VGKS LL         I SY  T      +   E        QI DT G   
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTT-RGINVGQFEDGYFRY--QIIDTPGLLD 226

Query: 67  ---QERFRTITSSYYRGAH---GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LL 118
               ER      +     +    II ++D ++   F  +++ ++  +    +  +   L+
Sbjct: 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLPFLV 285

Query: 119 VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 178
           V NK D+   + +  +  + F  E G+  ++ SA   T ++     +  +++        
Sbjct: 286 VINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAR 343

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 21/167 (12%)

Query: 11  LLLIGDSGVGKSCLLLRF-ADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--- 66
           ++L G   VGKS  +      +  ++SY  T   +  +   +      K QI DT G   
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT-KNLYVGHFDHKLN--KYQIIDTPGLLD 88

Query: 67  ---QERFRTITSSYYRGAH---GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LL 118
              + R     ++    AH    I+ + D+++Q      +Q +N      S   NK  ++
Sbjct: 89  RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQ-INLFYSIKSVFSNKSIVI 147

Query: 119 VGNKCDLTANKVVSYETA---KAFADEI--GIPFMETSAKDSTNVEQ 160
             NK D      +S +     K   D +   I F   S      VEQ
Sbjct: 148 GFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 22/141 (15%)

Query: 10  KLLLIGDSGVGKSCL---LLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
            +L++G  GVGKS     ++   +     S   + G    + +  + G T+   I DT G
Sbjct: 41  TILVMGKGGVGKSSTVNSIIG--ERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPG 96

Query: 67  -----------QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN 115
                          ++      +    ++ V  +      N  K     I       + 
Sbjct: 97  LIEGGYINDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154

Query: 116 K--LLVGNKCDLTANKVVSYE 134
              ++       +    + Y+
Sbjct: 155 NKAIVALTHAQFSPPDGLPYD 175

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 36/157 (22%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCL---LL---RFADDSYIESYISTIGVDFKIRTVEQDG 54
           +  +      +L++G  GVGKS     L+            S     G+   + +    G
Sbjct: 29  LKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVV-----RVSPFQAEGLRPVMVSRTMGG 83

Query: 55  KTIKLQIWDTAG-----------QERFRTITSSYYRGAHGIIIVYDVT-----DQESFNN 98
            TI   I DT G            E  +    +        +   DV      D++    
Sbjct: 84  FTIN--IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIA 141

Query: 99  VKQWL-NEIDRYASDNVNKLLVGNKCDLTANKVVSYE 134
           + Q    EI          LLV      +    +SYE
Sbjct: 142 ITQTFGKEIWCKT------LLVLTHAQFSPPDELSYE 172

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 24/142 (16%)

Query: 57  IKLQIWDTAGQ------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN 104
              ++ DTAG              R    +      A  I+ + D+  +   + + +   
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLGTERLDDELTEIRE 336

Query: 105 EIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV---EQA 161
               +       L V NK D  AN                   +  SA +   +   +Q 
Sbjct: 337 LKAAHP--AAKFLTVANKLDRAANADALIRAIADGTGT---EVIGISALNGDGIDTLKQH 391

Query: 162 FMAMAASIKDRMASQPSMNNAR 183
              +  ++     +   + + R
Sbjct: 392 MGDLVKNLDKLHEASVLVTSLR 413

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 9   FKLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFKIRTVE--QDGKTIKLQIWDT 64
           F +L +G++G+GKS L+  L         +  +  GV  +  T +  +    +KL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 65  AG 66
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.69
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.62
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.6
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.59
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.45
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.4
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.28
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.17
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.11
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.09
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.02
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.64
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.55
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.54
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.44
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.42
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.41
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.29
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.07
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.88
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.79
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.53
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.49
2xxa_A	433	Signal recognition particle protein; protein trans	97.47
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.35
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.31
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.25
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.23
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.23
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.23
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.21
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.19
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.19
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.17
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.17
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.17
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.14
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.14
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.13
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.13
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.12
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.11
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.1
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.1
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.08
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.08
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.07
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.06
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.06
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.05
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.05
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.03
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.03
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.02
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.01
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.0
1g6h_A	257	High-affinity branched-chain amino acid transport	96.99
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.99
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.99
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.99
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.99
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.98
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.98
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.97
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.96
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.96
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.95
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.95
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.94
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.94
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.94
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.94
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.93
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.92
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.92
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.91
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.9
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.9
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.9
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.9
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.89
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.89
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.87
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.87
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.85
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.84
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.84
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.83
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.81
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.81
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.77
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.77
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.76
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.76
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.76
1via_A	175	Shikimate kinase; structural genomics, transferase	96.76
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.75
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.72
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.71
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.7
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.7
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.7
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.69
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.68
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.68
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.67
3co5_A	143	Putative two-component system transcriptional RES	96.67
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.66
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.64
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.64
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.64
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.62
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.62
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.61
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.61
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.61
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.61
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.6
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.6
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.6
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.6
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.6
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.57
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.55
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.53
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.52
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.51
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.51
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.49
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.47
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.46
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.44
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.44
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.43
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.4
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.4
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.36
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.32
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.32
2og2_A	359	Putative signal recognition particle receptor; nuc	96.32
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.31
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.31
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.3
3uc9_A	233	Increased recombination centers protein 6; rossman	96.27
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.27
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.27
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.26
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.24
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.22
3bos_A	242	Putative DNA replication factor; P-loop containing	96.21
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.21
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.21
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.19
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.17
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.14
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.1
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.05
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.04
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.01
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.96
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.95
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.94
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.93
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.93
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.91
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.91
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.9
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.89
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.89
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.87
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.85
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.83
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.83
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.8
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.8
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.77
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.76
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.75
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.75
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.75
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.73
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.71
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.71
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.66
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.66
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.64
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.64
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.62
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.61
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.59
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.59
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.55
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.55
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.53
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.52
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.51
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.47
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.43
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.43
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.42
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.31
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.31
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.29
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.28
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.26
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.25
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.22
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.22
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.22
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.21
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.21
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.17
2qgz_A	308	Helicase loader, putative primosome component; str	95.17
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.17
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.16
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.15

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.4e-43  Score=255.66  Aligned_cols=169  Identities=40%  Similarity=0.681  Sum_probs=146.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.+|||||||+++|..+.+...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            36789999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++.++++.+++++|++|||++|.||+++|+.|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988777789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 028813          166 AASIKDRMA  174 (203)
Q Consensus       166 ~~~~~~~~~  174 (203)
                      .+.+.....
T Consensus       171 ~~~i~~~~~  179 (216)
T 4dkx_A          171 AAALPGMES  179 (216)
T ss_dssp             HHHC-----
T ss_pred             HHHHHhhhc
Confidence            998865433

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.5e-40  Score=237.74  Aligned_cols=202  Identities=70%  Similarity=1.130  Sum_probs=163.6

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |++..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            77777899999999999999999999999988888888888888888888899888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+++
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  160 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED  160 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999999877767899999999999987777888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCC---CC-CcccccCCCCCCCCCCCC
Q 028813          161 AFMAMAASIKDRMASQPSMNNA---RP-PTVQIKGQPVAQKSGCCS  202 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~c~~  202 (203)
                      +|++|.+.+.+...........   .+ ..+.....+...+++|||
T Consensus       161 l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  206 (206)
T 2bcg_Y          161 AFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC  206 (206)
T ss_dssp             HHHHHHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred             HHHHHHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence            9999999998765433211111   11 233333334467779998

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.6e-38  Score=228.31  Aligned_cols=201  Identities=35%  Similarity=0.622  Sum_probs=150.9

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            67777889999999999999999999999988877888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCC
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDS  155 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  155 (203)
                      +|++|+|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. ......+....++. ..+++++++||++|
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEA  159 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            9999999999999999999999988865543    468999999999997 44556677777777 66789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCCCC-CCCCCCcccccCCCCCCCCCCCC
Q 028813          156 TNVEQAFMAMAASIKDRMASQPSM-NNARPPTVQIKGQPVAQKSGCCS  202 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~  202 (203)
                      .|++++|++|.+.+.++....... ..+.+..+...+....++++|||
T Consensus       160 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          160 INVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             CCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            999999999999998765432211 11222333322333477888988

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.6e-36  Score=213.71  Aligned_cols=175  Identities=86%  Similarity=1.322  Sum_probs=159.8

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      .+..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++++...+..++..+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            44567889999999999999999999999988888888888888889999999889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      |++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998887778999999999999888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccC
Q 028813          162 FMAMAASIKDRMASQ  176 (203)
Q Consensus       162 ~~~l~~~~~~~~~~~  176 (203)
                      |++|.+.+.++....
T Consensus       170 ~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          170 FMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998876543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.4e-36  Score=214.29  Aligned_cols=175  Identities=59%  Similarity=1.041  Sum_probs=129.7

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            77777899999999999999999999999888777777888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|+++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999999877666799999999999987777788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028813          161 AFMAMAASIKDRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      +|++|.+.+.++..+
T Consensus       161 l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          161 AFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999876553

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=219.87  Aligned_cols=171  Identities=51%  Similarity=0.824  Sum_probs=146.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++..+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            36789999999999999999999999888777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998776667999999999999776677788888999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+.++...
T Consensus       170 l~~~i~~~~~~  180 (223)
T 3cpj_B          170 LINTIYQKVSK  180 (223)
T ss_dssp             HHHHHTTCC--
T ss_pred             HHHHHHHHhhh
Confidence            99998765443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=9.6e-36  Score=210.37  Aligned_cols=176  Identities=47%  Similarity=0.820  Sum_probs=159.7

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            67777899999999999999999999999988887888888888888888889888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+...+...++...+++++++||++|.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999988877767899999999999976667777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q 028813          161 AFMAMAASIKDRMASQ  176 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~  176 (203)
                      +|++|.+.+.++....
T Consensus       163 l~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          163 AFVQCARKILNKIESG  178 (186)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=208.17  Aligned_cols=175  Identities=60%  Similarity=0.958  Sum_probs=154.8

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            66778899999999999999999999999998888888888888888999999988999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +|++++|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999999999999876554 689999999999987777888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC
Q 028813          161 AFMAMAASIKDRMASQ  176 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~~  176 (203)
                      +|++|.+.+.+.+.+.
T Consensus       161 l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          161 MFNCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999998776644

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-35  Score=210.93  Aligned_cols=172  Identities=49%  Similarity=0.868  Sum_probs=156.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            34688999999999999999999999988887788888888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|+
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887777899999999999977667778888889988999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028813          164 AMAASIKDRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+.++..+
T Consensus       182 ~l~~~i~~~~~~  193 (201)
T 2ew1_A          182 DLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=212.43  Aligned_cols=171  Identities=36%  Similarity=0.605  Sum_probs=149.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            45679999999999999999999998887766666665443 46677888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998876543 4789999999999977667788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC
Q 028813          164 AMAASIKDRMASQ  176 (203)
Q Consensus       164 ~l~~~~~~~~~~~  176 (203)
                      +|.+.+.+++.+.
T Consensus       170 ~l~~~i~~~~~~~  182 (206)
T 2bov_A          170 DLMREIRARKMED  182 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccc
Confidence            9999998765443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=7.2e-35  Score=208.77  Aligned_cols=173  Identities=51%  Similarity=0.950  Sum_probs=157.0

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            45678999999999999999999999998877777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999877666799999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC
Q 028813          164 AMAASIKDRMASQ  176 (203)
Q Consensus       164 ~l~~~~~~~~~~~  176 (203)
                      +|.+.+.++..+.
T Consensus       164 ~l~~~i~~~~~~~  176 (203)
T 1zbd_A          164 RLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988775543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=8.8e-35  Score=206.15  Aligned_cols=169  Identities=52%  Similarity=0.955  Sum_probs=153.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            46789999999999999999999999888777777878788778888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..++++..++++++++||++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998776667999999999999776677788889999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028813          165 MAASIKDRM  173 (203)
Q Consensus       165 l~~~~~~~~  173 (203)
                      |.+.+.++.
T Consensus       179 l~~~i~~~~  187 (189)
T 2gf9_A          179 LVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3.9e-35  Score=205.83  Aligned_cols=168  Identities=49%  Similarity=0.897  Sum_probs=152.8

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+++...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            45688999999999999999999999988877777888878888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999977667778889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028813          164 AMAASIKD  171 (203)
Q Consensus       164 ~l~~~~~~  171 (203)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.9e-35  Score=207.39  Aligned_cols=170  Identities=52%  Similarity=0.863  Sum_probs=151.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            46889999999999999999999999888777777778788888888898889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++.|++++|++
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998776678999999999999776677788889999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028813          165 MAASIKDRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      |.+.+.++..
T Consensus       178 l~~~i~~~~~  187 (191)
T 2a5j_A          178 TAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=209.76  Aligned_cols=169  Identities=51%  Similarity=0.883  Sum_probs=146.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            46789999999999999999999999888777777877778888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  163 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..+++ +++++||++|.|++++|+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999877667799999999999977667788889999999999 999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028813          164 AMAASIKDRM  173 (203)
Q Consensus       164 ~l~~~~~~~~  173 (203)
                      +|.+.+.++.
T Consensus       186 ~l~~~i~~~~  195 (201)
T 2hup_A          186 RVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999997654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=9.1e-35  Score=204.44  Aligned_cols=168  Identities=44%  Similarity=0.711  Sum_probs=152.1

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..++|+++|.+|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||+.++...+..++..+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            46789999999999999999999999888877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998776668999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028813          165 MAASIKDR  172 (203)
Q Consensus       165 l~~~~~~~  172 (203)
                      |.+.+.+.
T Consensus       169 l~~~~~~~  176 (181)
T 2efe_B          169 IARRLPRV  176 (181)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhc
Confidence            99877544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-34  Score=203.21  Aligned_cols=171  Identities=50%  Similarity=0.940  Sum_probs=144.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ..+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++++...+..++..+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999988774 456677777777777788888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999987776789999999999998777778888889999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028813          163 MAMAASIKDRMA  174 (203)
Q Consensus       163 ~~l~~~~~~~~~  174 (203)
                      ++|.+.+.++..
T Consensus       166 ~~l~~~~~~~~~  177 (180)
T 2g6b_A          166 TAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHHHHhc
Confidence            999998875543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=8e-35  Score=204.56  Aligned_cols=173  Identities=33%  Similarity=0.583  Sum_probs=151.7

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |..+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            6667788999999999999999999999998877777777765554 667788888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|++++|+|++++.++..+..|+..+ ......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            99999999999999999999999887 44445678999999999997767777888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028813          160 QAFMAMAASIKDRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|++|.+.+.++..
T Consensus       161 ~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          161 EAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.1e-36  Score=212.88  Aligned_cols=171  Identities=50%  Similarity=0.960  Sum_probs=156.0

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..++..+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            45788999999999999999999999988877777777778888888888878999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+..+.++..++++++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.++..
T Consensus       179 ~l~~~i~~~~~  189 (191)
T 3dz8_A          179 RLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=9.7e-35  Score=202.18  Aligned_cols=167  Identities=56%  Similarity=1.028  Sum_probs=144.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999998887777788887888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999998877678999999999999 445567788888999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028813          166 AASIKDRM  173 (203)
Q Consensus       166 ~~~~~~~~  173 (203)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99987653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.8e-35  Score=203.82  Aligned_cols=167  Identities=37%  Similarity=0.748  Sum_probs=144.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35789999999999999999999999888777788888888888888888889999999999999999899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887766567899999999999776677888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028813          165 MAASIKD  171 (203)
Q Consensus       165 l~~~~~~  171 (203)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=205.57  Aligned_cols=171  Identities=46%  Similarity=0.779  Sum_probs=154.7

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34678999999999999999999999988877777887888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++.+.++...+++++++||++|.|++++|+
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998776666899999999999977666778888899989999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.++..
T Consensus       181 ~l~~~i~~~~~  191 (193)
T 2oil_A          181 TVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.7e-34  Score=202.51  Aligned_cols=169  Identities=35%  Similarity=0.584  Sum_probs=150.2

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      ++...+.+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34567889999999999999999999998888777777776555 67777888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC-CCCCHH
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK-DSTNVE  159 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~  159 (203)
                      |++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++.++++..++++++++||+ ++.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            9999999999999999999999888553 44678999999999998878888899999999999999999999 999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKD  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=207.94  Aligned_cols=170  Identities=48%  Similarity=0.886  Sum_probs=146.7

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      ++.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||.+++...+..++..+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            35678999999999999999999999998887777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++... +++++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999998877778999999999999776677778888888874 789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          162 FMAMAASIKDR  172 (203)
Q Consensus       162 ~~~l~~~~~~~  172 (203)
                      |++|.+.+.++
T Consensus       181 ~~~l~~~i~~~  191 (192)
T 2il1_A          181 FLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.5e-35  Score=207.73  Aligned_cols=169  Identities=39%  Similarity=0.688  Sum_probs=151.0

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +..++.+||+|+|.+|+|||||+++|++..+.....++.+.++....+..++..+.+.+||+||.+++...+..++..+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            44578899999999999999999999998877777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      ++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.++++..++++++++||+++.|++++|
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999999988776789999999999997666677888999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028813          163 MAMAASIKD  171 (203)
Q Consensus       163 ~~l~~~~~~  171 (203)
                      ++|.+.+.+
T Consensus       178 ~~l~~~i~~  186 (192)
T 2fg5_A          178 QGISRQIPP  186 (192)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHHh
Confidence            999887653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.3e-34  Score=202.50  Aligned_cols=170  Identities=30%  Similarity=0.488  Sum_probs=148.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4789999999999999999999998888777777777665 677778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998885543 347899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q 028813          165 MAASIKDRMASQ  176 (203)
Q Consensus       165 l~~~~~~~~~~~  176 (203)
                      |.+.+..+....
T Consensus       163 l~~~~~~~~~~~  174 (181)
T 3t5g_A          163 IILEAEKMDGAC  174 (181)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHHhcCCc
Confidence            999998765443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=207.19  Aligned_cols=172  Identities=48%  Similarity=0.821  Sum_probs=146.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||..++...+..++..+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            46789999999999999999999999888777778888788888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999987776678999999999999766667778888899999999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q 028813          165 MAASIKDRMASQ  176 (203)
Q Consensus       165 l~~~~~~~~~~~  176 (203)
                      |.+.+.++..+.
T Consensus       182 l~~~i~~~~~~~  193 (200)
T 2o52_A          182 CARTILNKIDSG  193 (200)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            999998776543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.4e-34  Score=204.29  Aligned_cols=176  Identities=40%  Similarity=0.788  Sum_probs=152.9

Q ss_pred             CCC-CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeE-EEEEEeCCe---------EEEEEEEeCCCccc
Q 028813            1 MNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQER   69 (203)
Q Consensus         1 m~~-~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~   69 (203)
                      |+. +.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+||+||.++
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            554 5678999999999999999999999998887777777777776 566666655         68999999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEE
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM  148 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  148 (203)
                      +...+..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+..++++..++++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999998876654 5789999999999977667778888999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMASQ  176 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  176 (203)
                      ++||+++.|++++|++|.+.+.++....
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999998776543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.9e-34  Score=198.19  Aligned_cols=165  Identities=41%  Similarity=0.706  Sum_probs=150.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+....+.+||+||.+++...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            45789999999999999999999999888777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|+|++++.++..+..|+..+........|+++|+||+|+.+.+.+..+....++..++++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998876778999999999999876777788888999999999999999999999999999


Q ss_pred             HHHHH
Q 028813          165 MAASI  169 (203)
Q Consensus       165 l~~~~  169 (203)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.4e-34  Score=199.29  Aligned_cols=164  Identities=48%  Similarity=0.788  Sum_probs=149.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999998887777788887888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++..+++..++++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999877766789999999999997666677788888999999999999999999999999999


Q ss_pred             HHHH
Q 028813          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-34  Score=200.37  Aligned_cols=163  Identities=40%  Similarity=0.712  Sum_probs=147.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999988877777888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+.   +.+..+..++++..++++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999987776678999999999998654   56777888889989999999999999999999999


Q ss_pred             HHHHHH
Q 028813          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=205.16  Aligned_cols=171  Identities=27%  Similarity=0.353  Sum_probs=144.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhccCCc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d   82 (203)
                      +.++.+||+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            456889999999999999999999986544334445556667777788898889999999999987764 6777889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998876543 47899999999999877778888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028813          162 FMAMAASIKDRMA  174 (203)
Q Consensus       162 ~~~l~~~~~~~~~  174 (203)
                      |++|.+.+.+++.
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998875443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2e-34  Score=202.64  Aligned_cols=174  Identities=40%  Similarity=0.687  Sum_probs=135.0

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhcc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR   79 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~   79 (203)
                      |+...+..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +....+.+||+||++++...+..++.
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            77777889999999999999999999999988877777888778888888777 55689999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-ccCCHHHHHHHHH-HhCCcEEEeecC
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN-KVVSYETAKAFAD-EIGIPFMETSAK  153 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~  153 (203)
                      .+|++|+|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+... +.+..++...++. ..+++++++||+
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK  160 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999999999999988866543    57899999999999543 4466777888887 456899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc
Q 028813          154 DSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      +|.|++++|++|.+.+.++++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999887643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.9e-34  Score=201.88  Aligned_cols=173  Identities=47%  Similarity=0.809  Sum_probs=152.7

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+......++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+.++...+..+++.
T Consensus         8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (195)
T 1x3s_A            8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG   87 (195)
T ss_dssp             -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred             cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            44555678999999999999999999999988877888888888888888889888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..++...++..++++++++||+++.|++
T Consensus        88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ  166 (195)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            999999999999999999999998886654 2478999999999994 34566778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028813          160 QAFMAMAASIKDRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|++|.+.+.+...
T Consensus       167 ~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          167 CAFEELVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999986544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.9e-34  Score=199.36  Aligned_cols=165  Identities=33%  Similarity=0.646  Sum_probs=149.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            56899999999999999999999998887777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++.+.++..++++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999886655 468999999999997766677888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-33  Score=200.10  Aligned_cols=169  Identities=35%  Similarity=0.643  Sum_probs=144.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999998887666666654 555667778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .....+....++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999886643 35789999999999864 456778888999999999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q 028813          165 MAASIKDRMASQ  176 (203)
Q Consensus       165 l~~~~~~~~~~~  176 (203)
                      |.+.+.+.....
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999998776654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-34  Score=208.80  Aligned_cols=168  Identities=30%  Similarity=0.602  Sum_probs=141.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999998887777777766443 456667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--------CCHHHHHHHHHHhCC-cEEEeecCCC
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------VSYETAKAFADEIGI-PFMETSAKDS  155 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (203)
                      +|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+...        +..++..+++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 79998877654 689999999999866543        367788888888896 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcc
Q 028813          156 TNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~~~~  175 (203)
                      .|++++|++|.+.+.+....
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC---
T ss_pred             CCHHHHHHHHHHHHhhhhhh
Confidence            99999999999999765443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=203.29  Aligned_cols=172  Identities=56%  Similarity=1.015  Sum_probs=152.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777888888888888888898889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++||+++.|++++|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988777667999999999999 44556777888888889999999999999999999999


Q ss_pred             HHHHHHHHhccCC
Q 028813          165 MAASIKDRMASQP  177 (203)
Q Consensus       165 l~~~~~~~~~~~~  177 (203)
                      |.+.+.++.....
T Consensus       176 l~~~~~~~~~~~~  188 (213)
T 3cph_A          176 LAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhhh
Confidence            9999987755433

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.7e-33  Score=197.19  Aligned_cols=166  Identities=40%  Similarity=0.721  Sum_probs=145.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..++|+++|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||..++...+..++..+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999999888777788888888888888998889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCCCCHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~  159 (203)
                      ++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. .+....++..+++. ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998866543    578999999999997 45567778888887 567899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKD  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=197.09  Aligned_cols=169  Identities=31%  Similarity=0.431  Sum_probs=136.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--cccchhhhccCCcE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG   83 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~   83 (203)
                      ++.+||+++|++|+|||||+++|.+......+ ++.+.+.....+.+++..+.+.+||+||...  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            46799999999999999999999988765443 3455566777788888888999999999887  56667778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998886542 3478999999999998777788888888888899999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028813          163 MAMAASIKDRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      ++|.+.+..++..
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999776543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.3e-34  Score=200.48  Aligned_cols=166  Identities=40%  Similarity=0.702  Sum_probs=150.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||..++...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46699999999999999999999988887778888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877666679999999999997777777888888898999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       172 ~~~~~~  177 (179)
T 2y8e_A          172 AAALPG  177 (179)
T ss_dssp             HHTCC-
T ss_pred             HHHHhh
Confidence            886643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=7.5e-34  Score=197.64  Aligned_cols=165  Identities=28%  Similarity=0.366  Sum_probs=133.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhccCCcEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIII   86 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   86 (203)
                      .+||+++|.+|+|||||+++|.+........++.+.+.....+..++..+.+.+||++|..++.. .+..++..+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998776656656666777888888999899999999999988765 67777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998866554 478999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028813          166 AASIKDR  172 (203)
Q Consensus       166 ~~~~~~~  172 (203)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=9e-34  Score=200.93  Aligned_cols=167  Identities=44%  Similarity=0.833  Sum_probs=146.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~   83 (203)
                      ..+.+||+|+|.+|+|||||+++|++..+.....++.+.++....+..++..+.+.+||+||.+++. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3577999999999999999999999988877778888888888888889888999999999999887 788889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC---CCHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS---TNVE  159 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~  159 (203)
                      +|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+..+.++..++++++++||+++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999887664 457999999999999776677888889999999999999999999   9999


Q ss_pred             HHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKD  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|.+|.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (189)
T 1z06_A          177 AIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHHHhh
Confidence            999999887753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.7e-34  Score=201.51  Aligned_cols=168  Identities=32%  Similarity=0.532  Sum_probs=146.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999999887766777777778888888876 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVN-KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      +++|+|++++.+++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..++...++..++++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999988866432  1345 899999999977666778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          161 AFMAMAASIKDR  172 (203)
Q Consensus       161 ~~~~l~~~~~~~  172 (203)
                      +|++|.+.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988644

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3.3e-34  Score=204.83  Aligned_cols=167  Identities=41%  Similarity=0.732  Sum_probs=138.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+++...+..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45789999999999999999999999887777777777778888888898889999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT------ANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      |+|+|++++.++..+..|+..+......+.|+++|+||+|+.      ..+.+..+..+.++..++++++++||++|.|+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv  184 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI  184 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence            999999999999999999999987766679999999999985      34566778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKD  171 (203)
Q Consensus       159 ~~~~~~l~~~~~~  171 (203)
                      +++|.+|.+.+.+
T Consensus       185 ~el~~~l~~~i~~  197 (199)
T 2p5s_A          185 VEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.6e-34  Score=207.16  Aligned_cols=172  Identities=42%  Similarity=0.821  Sum_probs=150.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe----------EEEEEEEeCCCccccccc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRTI   73 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~   73 (203)
                      ..++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.+||+||++++...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            3478899999999999999999999998887777777777777777777665          689999999999999999


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      +..++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+..++++..++++++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999999887755443 57899999999999776677788899999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 028813          153 KDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      +++.|++++|++|.+.+.++..+
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999876554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5e-34  Score=203.58  Aligned_cols=167  Identities=32%  Similarity=0.483  Sum_probs=141.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||..++...+..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            567999999999999999999999888766666666533 3345667778889999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ +....+....++..++++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888887765543  3689999999999865 45667778888888999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.++..
T Consensus       164 ~l~~~~~~~~~  174 (199)
T 2gf0_A          164 ELLTLETRRNM  174 (199)
T ss_dssp             HHHHHCSSSCE
T ss_pred             HHHHHHhhhhc
Confidence            99988765433

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=5.4e-33  Score=198.88  Aligned_cols=166  Identities=34%  Similarity=0.613  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE-----------------------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT-----------------------------   56 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   56 (203)
                      ++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999988887778888877877777777655                             


Q ss_pred             --------EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           57 --------IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        57 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                              ..+.+||+||+..+...+..++..+|++++|+|++++.++..+..|+..+.....  .|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                    8999999999999999999999999999999999999999999999998876553  89999999999 555


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      .....+++++++..++++++++||++|.|++++|++|.+.+.++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            6677888999999999999999999999999999999999886643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=203.24  Aligned_cols=169  Identities=28%  Similarity=0.453  Sum_probs=143.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||.+.+...+..++..+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            5789999999999999999999999888877777776555 566666677789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999886543 346899999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+.+....
T Consensus       181 l~~~i~~~~~~  191 (201)
T 3oes_A          181 VIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHhhhhh
Confidence            99999866443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.6e-33  Score=197.60  Aligned_cols=167  Identities=26%  Similarity=0.548  Sum_probs=146.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            357899999999999999999999998887777777765544 4677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC--ccCCHHHHHHHHHHhCCc-EEEeecCCCCCHHH
Q 028813           85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQ  160 (203)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  160 (203)
                      |+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.  +.+..++..+++..+++. ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 67888887654 46899999999999753  567788899999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028813          161 AFMAMAASIKDRM  173 (203)
Q Consensus       161 ~~~~l~~~~~~~~  173 (203)
                      +|++|.+.+.++.
T Consensus       178 l~~~l~~~i~~~~  190 (194)
T 3reg_A          178 VFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1e-33  Score=204.95  Aligned_cols=175  Identities=28%  Similarity=0.469  Sum_probs=148.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-eEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ....+||+|+|.+|||||||+++|++..+...+.++.+.......+...+ ..+.+.+||+||.+.+...+..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            35789999999999999999999998887777777777666665555543 44889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++...+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  167 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL  167 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999999999887777799999999999987777888888888888899999999999999999999


Q ss_pred             HHHHHHHHHhccCCCC
Q 028813          164 AMAASIKDRMASQPSM  179 (203)
Q Consensus       164 ~l~~~~~~~~~~~~~~  179 (203)
                      +|.+.+.++.......
T Consensus       168 ~l~~~~~~~~~~~~~~  183 (218)
T 4djt_A          168 HLARIFTGRPDLIFVS  183 (218)
T ss_dssp             HHHHHHHCCTTCCBCS
T ss_pred             HHHHHHhccccccccc
Confidence            9999998876655443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.6e-33  Score=197.06  Aligned_cols=170  Identities=36%  Similarity=0.593  Sum_probs=147.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||+.++...+..++..+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            4577999999999999999999999888776666666544 345567788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++.++++..++++++++||+++.|++++|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            999999999999999999988866544 4789999999999977666778888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028813          164 AMAASIKDRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+.+++.+
T Consensus       174 ~l~~~i~~~~~~  185 (187)
T 2a9k_A          174 DLMREIRARKME  185 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcc
Confidence            999999876653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.2e-33  Score=193.92  Aligned_cols=165  Identities=38%  Similarity=0.628  Sum_probs=141.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||..++...+..++..+|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            3569999999999999999999998887666666665443 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999988866544 47999999999999776677888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028813          165 MAASIKD  171 (203)
Q Consensus       165 l~~~~~~  171 (203)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=198.93  Aligned_cols=165  Identities=26%  Similarity=0.432  Sum_probs=140.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|.+++... ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            35789999999999999999999999887777777776554 455677888899999999999988774 6788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec-CCCCCHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQ  160 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~  160 (203)
                      ++|||++++.+++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..++..+++..++++++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            99999999999999999999886653   247899999999999776778888899999999999999999 89999999


Q ss_pred             HHHHHHHHHHH
Q 028813          161 AFMAMAASIKD  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|++|.+.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-36  Score=214.07  Aligned_cols=170  Identities=88%  Similarity=1.344  Sum_probs=143.4

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCC
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      ++..++.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+++...+..++..+
T Consensus        27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            44557899999999999999999999999888877788888888889999999889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      |++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998777778999999999999877666666678888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          162 FMAMAASIKD  171 (203)
Q Consensus       162 ~~~l~~~~~~  171 (203)
                      |++|.+.+.+
T Consensus       187 ~~~l~~~l~~  196 (199)
T 3l0i_B          187 FMTMAAEIKK  196 (199)
T ss_dssp             HHHHTTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999877654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.4e-33  Score=202.52  Aligned_cols=170  Identities=26%  Similarity=0.524  Sum_probs=143.9

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||++|.+++...+..++..+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345789999999999999999999999888877778777554 4566677778999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEE
Q 028813           84 IIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  149 (203)
                      +|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+.            +.+..++...++..+++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 688999997765 46899999999999653            56788889999999999 9999


Q ss_pred             eecCCCCC-HHHHHHHHHHHHHHHhcc
Q 028813          150 TSAKDSTN-VEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       150 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~  175 (203)
                      |||++|.| ++++|++|.+.+......
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCcC
Confidence            99999998 999999999998866543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.9e-33  Score=195.38  Aligned_cols=164  Identities=20%  Similarity=0.341  Sum_probs=141.4

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+|+|.+|||||||+++|++..+...+.++.  ..+...+.+++..+.+.+||++|.+++.     ++..+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            35688999999999999999999999988876666653  3345778889988999999999988765     7788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEIG-IPFMETSAKDSTNVE  159 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  159 (203)
                      +++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..++..+++..++ ++++++||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999876643 468999999999984  456678888999999987 899999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028813          160 QAFMAMAASIKDRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      ++|++|.+.+.+++.
T Consensus       169 ~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          169 RVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=8e-33  Score=191.87  Aligned_cols=163  Identities=31%  Similarity=0.419  Sum_probs=122.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|.+...... .++.+.+ ....+..++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccc-eEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997665322 2233322 345667888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      +|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+..+.++..++++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998886543 35789999999999988888888889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          167 ASIKDR  172 (203)
Q Consensus       167 ~~~~~~  172 (203)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4.1e-33  Score=193.19  Aligned_cols=164  Identities=38%  Similarity=0.640  Sum_probs=143.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++|+|||||+++|.++.+...+.++.+ ......+..++....+.+||+||.+++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            458999999999999999999998887766666655 3446677788888899999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988876543 3579999999999997766777888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.5e-33  Score=198.80  Aligned_cols=170  Identities=28%  Similarity=0.393  Sum_probs=138.5

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCC
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGA   81 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   81 (203)
                      ..++.+||+|+|.+|+|||||+++|.+... .....++.+.++....+.+++..+.+.+||++|... +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            346779999999999999999999996433 122233455666777788899888999999999776 455566678899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999998877653 234789999999999976666777778888888999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028813          161 AFMAMAASIKDRM  173 (203)
Q Consensus       161 ~~~~l~~~~~~~~  173 (203)
                      +|++|.+.+..++
T Consensus       193 lf~~l~~~i~~~~  205 (211)
T 2g3y_A          193 LFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-32  Score=194.29  Aligned_cols=164  Identities=33%  Similarity=0.588  Sum_probs=143.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35789999999999999999999998887777777765443 45667777788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEe
Q 028813           85 IIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  150 (203)
                      |+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 79888877644 6899999999999754            35677888899998997 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028813          151 SAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ||++|.|++++|++|.+.+.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998775

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=9.1e-33  Score=191.62  Aligned_cols=163  Identities=35%  Similarity=0.624  Sum_probs=142.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||+.++...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887777777766443 4556677778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++..+ +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999998887654 3457999999999999777777788888888887 789999999999999999999


Q ss_pred             HHHHHH
Q 028813          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998763

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=5.3e-33  Score=199.46  Aligned_cols=169  Identities=31%  Similarity=0.610  Sum_probs=141.6

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG   80 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   80 (203)
                      |+...++.+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+++...+..++..
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            566667889999999999999999999999888777777776554 4556677778999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-Cc
Q 028813           81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IP  146 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~  146 (203)
                      +|++|+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+.+.            +.+..++.++++..++ ++
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            9999999999999999998 689888876653 6899999999999642            4567788889998887 69


Q ss_pred             EEEeecC-CCCCHHHHHHHHHHHHHH
Q 028813          147 FMETSAK-DSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       147 ~~~~Sa~-~~~~i~~~~~~l~~~~~~  171 (203)
                      ++++||+ ++.|++++|++|.+.+.+
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            9999999 689999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=195.90  Aligned_cols=168  Identities=30%  Similarity=0.479  Sum_probs=138.1

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+++...+..++.++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            4678999999999999999999999888766666666533 455677788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEe
Q 028813           85 IIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  150 (203)
                      |+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            9999999999999997 69988877654 6899999999998652            45677888889888887 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ||++|.|++++|++|.+.+.+.+.
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999887654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.4e-33  Score=202.46  Aligned_cols=169  Identities=26%  Similarity=0.498  Sum_probs=113.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEeCCe--EEEEEEEeCCCccccccchhhhccCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA   81 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   81 (203)
                      ...++|+|+|.+|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||.+.+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999988  666667777776777788888876  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-CccCCHHHHHHHHHHhCCcEEEeecCC-CC
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTA-NKVVSYETAKAFADEIGIPFMETSAKD-ST  156 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  156 (203)
                      |++|+|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..++...++..++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999987765   5799999999999987 667788889999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 028813          157 NVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~~~  174 (203)
                      |++++|++|.+.+.+...
T Consensus       178 gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             --CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=195.64  Aligned_cols=167  Identities=33%  Similarity=0.517  Sum_probs=145.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||... ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4679999999999999999999999887777777766443 45567788889999999999887 677888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC-CHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~  163 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            9999999999999999998886653 3578999999999997766778888899999999999999999999 9999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.+++.
T Consensus       184 ~l~~~i~~~~~  194 (196)
T 2atv_A          184 ELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHhhcc
Confidence            99999986643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.5e-32  Score=191.56  Aligned_cols=163  Identities=24%  Similarity=0.349  Sum_probs=136.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+||++|+++     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999888765 555555 34466777888889999999999876     45778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.+++.+..|+..+....   ..+.|+++|+||+|+.  ..+.+..++.++++..+ +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876665443   2578999999999984  44567788888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 028813          160 QAFMAMAASIKDRMAS  175 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~~  175 (203)
                      ++|++|.+.+.+.+..
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876553

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=8.5e-32  Score=190.79  Aligned_cols=168  Identities=35%  Similarity=0.607  Sum_probs=134.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ....++|+++|.+|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||..++...+..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            357799999999999999999999988776666665543 3446677788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++.++++..++++++++||+++.|++++|+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  175 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY  175 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988866543 4689999999999866 45677888899999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.+++.
T Consensus       176 ~l~~~~~~~~~  186 (190)
T 3con_A          176 TLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999887644

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.9e-32  Score=192.31  Aligned_cols=164  Identities=30%  Similarity=0.551  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            567999999999999999999999888776666666533 3556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888876654 6899999999998654            35667778888888887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~  171 (203)
                      |++|.|++++|++|.+.+.+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=196.26  Aligned_cols=167  Identities=32%  Similarity=0.608  Sum_probs=123.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.+|+|||||+++|.+..+...+.++.+ ......+.+++..+.+.+||+||++++...+..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4679999999999999999999999887766666654 334556778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..++...++..+++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6888887654 468999999999997643            5667778888888897 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhc
Q 028813          152 AKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      |++|.|++++|++|.+.+.+.+.
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.4e-32  Score=192.07  Aligned_cols=165  Identities=30%  Similarity=0.593  Sum_probs=141.1

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            46789999999999999999999999888777777766544 45567777889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEe
Q 028813           85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  150 (203)
                      |+|+|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++..+++..++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67988887654 36899999999999642            4567788888998888 799999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q 028813          151 SAK-DSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       151 Sa~-~~~~i~~~~~~l~~~~~~  171 (203)
                      ||+ ++.|++++|++|.+.+.+
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.6e-31  Score=184.83  Aligned_cols=163  Identities=36%  Similarity=0.617  Sum_probs=140.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||..++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            3589999999999999999999988776666665543 345666778888899999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+...+++..++++++++|+++|.|++++|++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998866543 4689999999999876 4566778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=190.99  Aligned_cols=163  Identities=33%  Similarity=0.515  Sum_probs=139.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||..++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            458999999999999999999999887666666665433 3455677778899999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|++++.+++.+..|+..+.....  .+.|+++|+||+|+.+.+.+.......++..++++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999998888888765532  46899999999999776677777888888889999999999999999999999


Q ss_pred             HHHHHH
Q 028813          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.9e-31  Score=190.75  Aligned_cols=163  Identities=31%  Similarity=0.606  Sum_probs=141.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++++...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            56799999999999999999999998887777777765554 34677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.++..+ ..|+..+..... +.|+++|+||+|+.+.            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 678888876543 6899999999999765            34677788888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~  170 (203)
                      |++|.|++++|++|.+.+.
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.8e-32  Score=194.17  Aligned_cols=169  Identities=24%  Similarity=0.318  Sum_probs=134.9

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccccceeeeEEEEE-EeCCeEEEEEEEeCCCcccccc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      ..++.+||+|+|.+|||||||++.+.+......          ..++.+.++....+ ..++..+.+.+||+||++++..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            346889999999999999999987765432221          12333333333333 4566778999999999999999


Q ss_pred             chhhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-
Q 028813           73 ITSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-  145 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-  145 (203)
                      .+..+++.+|++|+|+|++      +..++..+..|+..+. ....+.|+++|+||+|+.+.  ...+++++++..+++ 
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~  166 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKF  166 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCS
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCc
Confidence            9999999999999999999      5567777777877763 23357999999999998654  677888899988998 


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          146 PFMETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       146 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      +++++||++|.|++++|++|.+.+.++.++
T Consensus       167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          167 PVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999877653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-31  Score=191.29  Aligned_cols=165  Identities=31%  Similarity=0.597  Sum_probs=136.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      +..+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||.+++...+..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            46789999999999999999999998877666666664443 34677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 67888886654 36899999999999654            34667778888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~~  172 (203)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988744

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=5e-31  Score=187.32  Aligned_cols=167  Identities=28%  Similarity=0.391  Sum_probs=135.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhccCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH   82 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d   82 (203)
                      ++.+||+++|.+|||||||+++|.+..  +... .++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            467999999999999999999999632  2222 23455566677788899888999999999765 4556677788899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776653 357899999999999766667777777888888999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028813          162 FMAMAASIKDRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |++|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.8e-32  Score=192.79  Aligned_cols=163  Identities=32%  Similarity=0.624  Sum_probs=125.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++...+..++..+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4679999999999999999999998877666666554332 223445566678889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----------CCHHHHHHHHHHhCC-cEEEeecC
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV----------VSYETAKAFADEIGI-PFMETSAK  153 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
                      +|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+...          +..++..+++..+++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 69888877654 689999999999866543          367778888888896 99999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~  170 (203)
                      +|.|++++|++|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998763

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=1.8e-31  Score=191.42  Aligned_cols=162  Identities=31%  Similarity=0.574  Sum_probs=137.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            5679999999999999999999998887766666664 445566777888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCcc------------CCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV------------VSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...            +..++...++..+++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999997 7888887765 5689999999999866532            677788888888886 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~  169 (203)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.7e-31  Score=190.49  Aligned_cols=165  Identities=17%  Similarity=0.314  Sum_probs=129.0

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      +.....+|+|+|.+|||||||+++|++..+.. .+.++.+  .....+...+  +.+.+||+||++++...+..++..+|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            45788999999999999999999999988877 6667666  3344444444  89999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCccCCHHHHHH------HHHHhCCcEE
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--------DNVNKLLVGNKCDLTANKVVSYETAKA------FADEIGIPFM  148 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ilv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~  148 (203)
                      ++|+|+|++++.++..+..|+..+.....        .+.|+++|+||+|+.+...  .+++..      ++...+++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIF  166 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEE
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEE
Confidence            99999999999999999888887744311        2689999999999976532  222211      1134568999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ++||++|.|++++|++|.+.+.++..
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999987643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=5.3e-32  Score=196.36  Aligned_cols=168  Identities=32%  Similarity=0.586  Sum_probs=146.5

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ...+.+||+++|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            34678999999999999999999988776666677777888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+....  .....++...+++++++||++|.|++++|.
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  167 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL  167 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999977653 6899999999999654432  245567778899999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028813          164 AMAASIKDRMA  174 (203)
Q Consensus       164 ~l~~~~~~~~~  174 (203)
                      +|.+.+.....
T Consensus       168 ~l~~~l~~~~~  178 (221)
T 3gj0_A          168 WLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHTCTT
T ss_pred             HHHHHHHhCcc
Confidence            99999876544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=2.4e-30  Score=184.80  Aligned_cols=171  Identities=51%  Similarity=0.837  Sum_probs=149.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            56799999999999999999999998887777788777888888889998899999999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|+.+..+++.+..|+..+......+.|+++++||+|+.+......++...++...++.++++|++++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988889888866555578999999999997666667778888998899999999999999999999999


Q ss_pred             HHHHHHHhccC
Q 028813          166 AASIKDRMASQ  176 (203)
Q Consensus       166 ~~~~~~~~~~~  176 (203)
                      .+.+.+...+.
T Consensus       163 ~~~~~~~~~~~  173 (199)
T 2f9l_A          163 LTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhc
Confidence            99998765444

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=182.77  Aligned_cols=162  Identities=19%  Similarity=0.319  Sum_probs=129.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..+.++|+|+|.+|+|||||+++|.+.. ....+.++.+  .....+.+++  ..+.+||+||.+++...+..++..+|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3578999999999999999999999877 4455555554  4556666665  789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCC
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDS  155 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  155 (203)
                      +++|+|++++.++..+..|+..+.....   .+.|+++|+||+|+.+.  ...+++.++..     ..+++++++||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999888887755432   47899999999999653  34455555543     23578999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIKDR  172 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~  172 (203)
                      .|++++|++|.+.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             BTHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999887543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.3e-29  Score=178.59  Aligned_cols=166  Identities=54%  Similarity=0.890  Sum_probs=147.9

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +.++.++|+|+|++|||||||+++|.+..++..+.++.+.++....+.+++..+.+.+||++|..++...+..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            34678999999999999999999999988887888888888888899999988889999999999888888888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +++|+|+.+..+++.+..|+..+........|+++++||+|+.+......+..+.++...++.++++|++++.|++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999998888888877665555789999999999976566677888889999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      +|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=9.2e-30  Score=179.72  Aligned_cols=160  Identities=24%  Similarity=0.430  Sum_probs=128.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.+.. ...+.++.+  .....+..++  ..+.+||+||++++...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999877 556666655  3445555655  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..+++.+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888777443 23468999999999996543  2333333221     235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=2.8e-30  Score=179.81  Aligned_cols=159  Identities=23%  Similarity=0.375  Sum_probs=125.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|+|||||+++|.+..+. ...++.+  .....+.+++  ..+.+||+||.+++...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            35699999999999999999999987764 3444544  4445566665  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHH-----HHHhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+...  ..++...     +...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999888888766433 225789999999999966432  2222222     12235689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKD  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=6.3e-31  Score=186.18  Aligned_cols=161  Identities=24%  Similarity=0.404  Sum_probs=127.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++.  .+...+  +.+.+||+||..++...+..++..+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            56899999999999999999999988877666677665543  344444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            999999999999998888777443 22578999999999996542  2222222211     124579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       174 ~l~~~l~~~~~~~  186 (188)
T 1zd9_A          174 ITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999877544

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=4.3e-31  Score=182.77  Aligned_cols=157  Identities=22%  Similarity=0.406  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|.+|+|||||+++|.+..+.. +.++.+  .....+...+  +.+.+||+||++++...+..++..+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 345544  3344454444  78999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      |++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ...++.....     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888876432 23468999999999996542  2222222111     124579999999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          163 MAMAASIKDR  172 (203)
Q Consensus       163 ~~l~~~~~~~  172 (203)
                      ++|.+.+.++
T Consensus       154 ~~l~~~i~~~  163 (164)
T 1r8s_A          154 DWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999887543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.3e-30  Score=182.87  Aligned_cols=156  Identities=22%  Similarity=0.292  Sum_probs=120.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  ..+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999987754 344444433  35566676  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----------------hCCcE
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----------------IGIPF  147 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  147 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+  ....+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999998877543 235789999999999965  4556666666542                 24579


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      ++|||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.4e-30  Score=180.43  Aligned_cols=160  Identities=21%  Similarity=0.349  Sum_probs=124.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|.+|||||||+++|.++.+. .+.++.+..  ...+.+++  ..+.+||+||.+++...+..++..+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999987765 445555433  34455555  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988875532 247899999999999653  23344444332     235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.3e-29  Score=179.67  Aligned_cols=156  Identities=21%  Similarity=0.281  Sum_probs=125.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+++|++|||||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+||+||++++...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            35679999999999999999999987764 33444443  456666776  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH------------hCCcEEEeec
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE------------IGIPFMETSA  152 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  152 (203)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+  ....+++.+....            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999988877543 235789999999999965  3455555555432            3468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAAS  168 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~  168 (203)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.5e-30  Score=179.87  Aligned_cols=157  Identities=20%  Similarity=0.316  Sum_probs=123.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.++|+++|.+|+|||||+++|.+..+ ....++.+...  ..+.+++  ..+.+||+||.+++...+..++..+|++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            45789999999999999999999998876 34445555333  4455555  8899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  158 (203)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|+
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  170 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  170 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            99999999999999988887775432 357899999999999653  23344433321     23468999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      +++|++|.+.
T Consensus       171 ~~l~~~l~~~  180 (181)
T 2h17_A          171 CQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.2e-30  Score=185.45  Aligned_cols=158  Identities=22%  Similarity=0.372  Sum_probs=119.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+|+|++|||||||+++|.+..+. ...++.+  .....+...+  +.+.+||+||.+++...+..++..+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            46799999999999999999999987764 3344444  4445555555  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999998888876432 23468999999999996542  2222222111     123579999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.9e-29  Score=176.59  Aligned_cols=160  Identities=26%  Similarity=0.383  Sum_probs=123.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|||||||+++|.+..+. .+.++.+  .....+..++  +.+.+||+||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999987542 3344444  3344555665  78999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH-----HhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-----EIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+...  .+++.+...     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776332 235789999999999965432  233322211     224679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=4e-30  Score=182.07  Aligned_cols=160  Identities=19%  Similarity=0.329  Sum_probs=125.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|.+|+|||||+++|.+..+.. +.++.+  .....+..++  ..+.+||+||++++...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998776643 344544  3344555555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+...  .+++....     ...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999888888776443 235789999999999965432  22222211     1234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.2e-28  Score=188.80  Aligned_cols=163  Identities=29%  Similarity=0.546  Sum_probs=141.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..++..+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4589999999999999999999988877676666653 345667788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhCC-cEEEeec
Q 028813           87 VYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSA  152 (203)
Q Consensus        87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  152 (203)
                      |+|++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 68888876654 7899999999998653            45677888899999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4e-29  Score=175.88  Aligned_cols=160  Identities=23%  Similarity=0.368  Sum_probs=124.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.++|+++|++|||||||+++|.+..+ ..+.++.+  .....+.+++  ..+.+||+||..++...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 34445554  3344555555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+....     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888775432 357899999999998653  233444333221     23579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKDR  172 (203)
Q Consensus       160 ~~~~~l~~~~~~~  172 (203)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=1e-28  Score=179.90  Aligned_cols=166  Identities=21%  Similarity=0.182  Sum_probs=119.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc------cc---ccchhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RF---RTITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~~   76 (203)
                      +..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||..      +.   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            5679999999999999999999998876533334444445555555555  789999999983      21   111234


Q ss_pred             hccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH---HHHHHHHHhC--CcEEE
Q 028813           77 YYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE---TAKAFADEIG--IPFME  149 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  149 (203)
                      ++..+|++|+|+|++++.++.  ....|+..+... ..+.|+++|+||+|+.+.+.+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            567889999999999987654  223455555432 236899999999999776655543   4566666676  89999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          150 TSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      +||++|.|++++|++|.+.+.+.+.
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=2.1e-29  Score=179.47  Aligned_cols=161  Identities=20%  Similarity=0.268  Sum_probs=119.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEE--EEEEe-CCeEEEEEEEeCCCccccccch---hhh
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI--RTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSY   77 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~   77 (203)
                      +.++.+||+++|.+|||||||++++.+.... .  ++.+.+...  ....+ ++..+.+.+||++|++++....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4578899999999999999999988875332 2  222222222  22223 2456889999999999987766   789


Q ss_pred             ccCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-------ccCCHHHHHHHHH----HhC
Q 028813           78 YRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-------KVVSYETAKAFAD----EIG  144 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~-------~~~~~~~~~~~~~----~~~  144 (203)
                      ++.+|++|+|+|++++  +++..+..|+..+... ..+.|+++|+||+|+.+.       +.+.......++.    .++
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999997  6667777777766433 347999999999998652       2344444566666    567


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          145 IPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       145 ~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++++++||++ .|++++|..|.+.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=6.1e-30  Score=180.52  Aligned_cols=164  Identities=23%  Similarity=0.422  Sum_probs=121.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCccccceeeeEEEEEEe---CCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+||+++|++|||||||+++|.+.  .+...+.++.+.++....+..   ++..+.+.+||++|.+++...+..++..+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  344455666666665555443   234578999999999999888888999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC---HHHHHHHHHHhCCc----EEEeecCC
Q 028813           83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YETAKAFADEIGIP----FMETSAKD  154 (203)
Q Consensus        83 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  154 (203)
                      ++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+.....   .+....++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57888999999886654 368999999999986543321   22334455556776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHH
Q 028813          155 ST-NVEQAFMAMAASIKDR  172 (203)
Q Consensus       155 ~~-~i~~~~~~l~~~~~~~  172 (203)
                      +. +++++++.|.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 9999999998887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=9.2e-32  Score=192.80  Aligned_cols=162  Identities=31%  Similarity=0.572  Sum_probs=134.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.+|+|||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||.+++...+..++..+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            56799999999999999999999988776666665543 33445556666788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCc------------cCCHHHHHHHHHHhCC-cEEEee
Q 028813           86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIGI-PFMETS  151 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  151 (203)
                      +|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+..            .+..++...++..+++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 78877765443 68999999999996543            3445566777777887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028813          152 AKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~  169 (203)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.3e-28  Score=172.47  Aligned_cols=161  Identities=19%  Similarity=0.168  Sum_probs=122.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+..++  ..+.+||+||++++...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999887766666666566666677777  5678999999999999898999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-------C--CcEEEeecCCC
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-------G--IPFMETSAKDS  155 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  155 (203)
                      ++|+|++++.....    +..+......+.|+++|+||+|+.+..   .+.........       +  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999988432211    122222233468999999999996532   23333322222       1  57999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q 028813          156 TNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~~~  174 (203)
                      .|++++|++|.+.+...+.
T Consensus       156 ~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHhhhhhcc
Confidence            9999999999998876544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.4e-28  Score=170.55  Aligned_cols=154  Identities=20%  Similarity=0.254  Sum_probs=115.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc-
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR-   79 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (203)
                      ..++|+++|++|+|||||+++|.+........++.+.+.....+..++  ..+.+|||||..++.      .....++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            358999999999999999999998776555555555555566666666  689999999988764      23344554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        80 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                       .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+.....+.. ..++++..++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999988543   3456666644   2689999999999854333322 356777888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      +++|++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=186.43  Aligned_cols=165  Identities=25%  Similarity=0.396  Sum_probs=121.0

Q ss_pred             CCceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccccc-eeeeEEEE--------------EEeCCeE
Q 028813            4 EYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYIESYISTI-GVDFKIRT--------------VEQDGKT   56 (203)
Q Consensus         4 ~~~~~~~i~v~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~   56 (203)
                      ..++.+||+|+|.+         |||||||+++|.+   ..+...+.+++ +.++....              ...++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35678999999999         9999999999998   44444444443 22222111              1135566


Q ss_pred             EEEEEEe-----------------------CCCccccccchhhhcc---------------------CCcEEEEEEECCC
Q 028813           57 IKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIIVYDVTD   92 (203)
Q Consensus        57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   92 (203)
                      +.+.+||                       ++|.+++...+..++.                     ++|++|+|+|+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       5666666667777776                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           93 Q--ESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        93 ~--~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +  .+++.+..|+..+... ...+.|+++|+||+|+.+.+.+  ++.++++.. .+++++++||++|.|++++|++|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  8999999999888654 3356899999999998654433  456667765 47899999999999999999999887


Q ss_pred             HH
Q 028813          169 IK  170 (203)
Q Consensus       169 ~~  170 (203)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=3.2e-27  Score=170.28  Aligned_cols=160  Identities=18%  Similarity=0.263  Sum_probs=112.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe-EEEEEEEeCCCcccccc-chhhhccCCcE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAHG   83 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~   83 (203)
                      .+.++|+++|.+|+|||||+++|++..+...+.+ .+.+..  .+.+++. .+.+.+||+||+.++.. .+..++..+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4679999999999999999999998877655543 333333  3555543 57899999999999887 78888999999


Q ss_pred             EEEEEECCChh-hHHHHHH-HHHHHHh--hcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHH----------------
Q 028813           84 IIIVYDVTDQE-SFNNVKQ-WLNEIDR--YASDNVNKLLVGNKCDLTANKVVS--YETAKAFAD----------------  141 (203)
Q Consensus        84 ~i~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~----------------  141 (203)
                      +|+|+|+++.. ++..+.. |...+..  ....+.|+++|+||+|+.......  .+.+.....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4555544 4444433  234468999999999997543211  111111111                


Q ss_pred             -----------------Hh--CCcEEEeecCCC------CCHHHHHHHHHHH
Q 028813          142 -----------------EI--GIPFMETSAKDS------TNVEQAFMAMAAS  168 (203)
Q Consensus       142 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~  168 (203)
                                       .+  ++++++|||++|      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             11  567999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=2.1e-27  Score=179.94  Aligned_cols=159  Identities=22%  Similarity=0.335  Sum_probs=124.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY   78 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   78 (203)
                      ..+||+++|.+|||||||+++|++.....   .+.+|.+  .....+.+.+ .+.+.+||+||++++     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            45899999999999999999998863321   2334444  4444455433 489999999999988     67788889


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--Ccc----CCHHHHHHHHHHhC---CcE
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--NKV----VSYETAKAFADEIG---IPF  147 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  147 (203)
                      +.+|++|+|+|++++.+++.+..|...+....  ..+.|+++|+||+|+.+  .+.    ...+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999998877766553332  34699999999999976  332    44467788888887   799


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      +++||++ .++.++|..+.+.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 89999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=185.69  Aligned_cols=159  Identities=22%  Similarity=0.382  Sum_probs=119.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.++|+|+|.+|+|||||+++|.+..+... .++.+  .....+...+  +.+.||||||++.+...+..++..+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3567999999999999999999998776433 34444  3344455555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-----hCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-----IGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++.++..+..|+..+.. ....+.|+++|+||+|+.+...  .+++......     .+++++++||++|.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            99999999999988887766533 3334789999999999965432  2323222211     23579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028813          160 QAFMAMAASIKD  171 (203)
Q Consensus       160 ~~~~~l~~~~~~  171 (203)
                      ++|++|.+.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=9.9e-28  Score=169.64  Aligned_cols=158  Identities=23%  Similarity=0.330  Sum_probs=114.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC-----------ccccccchhh
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSS   76 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~   76 (203)
                      .++|+++|.+|+|||||+++|.+..+...+.++.+....  .+...    .+.+||+||           .+.+...+..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            379999999999999999999998877666665543333  23333    678999999           5566666666


Q ss_pred             hccC-CcEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC
Q 028813           77 YYRG-AHGIIIVYDVTDQESFNNV-KQWLNE---------IDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI  145 (203)
Q Consensus        77 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      ++.. ++++++++++.+..++..+ ..|...         +......+.|+++|+||+|+....   .+..++++..+++
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~  151 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence            6665 6655555555556666655 445432         222233478999999999997654   4567778888886


Q ss_pred             c-------EEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          146 P-------FMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       146 ~-------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      +       ++++||++|.|++++|++|.+.+.+.+.
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            4       6999999999999999999999876654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=3e-27  Score=174.81  Aligned_cols=156  Identities=19%  Similarity=0.188  Sum_probs=121.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhc-
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY-   78 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-   78 (203)
                      .+.++|+++|.+|+|||||+++|++........++.+.+.....+...+  ..+.+||+||..++...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999998776555556666666666666655  78999999998877542      24454 


Q ss_pred             -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           79 -RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                       ..+|++++|+|+++.++.   ..|...+..   .+.|+++|+||+|+.+.+.+.. ....++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999986653   234444433   3689999999999854433332 36777888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      ++++|++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=1.7e-27  Score=168.29  Aligned_cols=159  Identities=20%  Similarity=0.258  Sum_probs=123.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR   79 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~   79 (203)
                      .+.++|+++|++|||||||+++|.+........++.+.+.....+..++  ..+.+||+||...+.      ..+..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3678999999999999999999998766555556666666777777776  789999999988764      23445553


Q ss_pred             --CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           80 --GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        80 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                        .+|++++|+|+++   ++....|+..+..   .+.|+++|+||+|+.....+. ...+.++..++++++++||+++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5899999999875   4455666666643   368999999999985433333 345677788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 028813          158 VEQAFMAMAASIKDRM  173 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~  173 (203)
                      ++++|++|.+.+.+..
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999886554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.8e-26  Score=173.81  Aligned_cols=165  Identities=16%  Similarity=0.081  Sum_probs=128.1

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccc----------
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFR----------   71 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~----------   71 (203)
                      +.+..-.|+++|.+|||||||+|+|++..+.. +..+.++..........+ +  .++.+|||||.....          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            45677899999999999999999999987653 333333434444444454 4  789999999985433          


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEE
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFME  149 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  149 (203)
                      .....++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+........+....+...++  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4556678899999999999998777777667777755   368999999999997445555666777777775  78999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHHh
Q 028813          150 TSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      +||++|.|++++|++|.+.+.+..
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCC
Confidence            999999999999999998886443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=2.6e-27  Score=168.24  Aligned_cols=159  Identities=15%  Similarity=0.207  Sum_probs=107.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (203)
                      .+..++|+|+|.+|+|||||+++|++..+.....++.+.+........++   .+.+||+||          .+.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            35679999999999999999999998875444444443333334444444   689999999          66666667


Q ss_pred             hhhccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--HHHHH-HHHHhCCcEE
Q 028813           75 SSYYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKA-FADEIGIPFM  148 (203)
Q Consensus        75 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~  148 (203)
                      ..++..+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+......  +.+.+ +....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            7777666   9999999999876655432 2222222   3689999999999976543321  22222 2222357899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ++||++|.|++++|++|.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=1.8e-27  Score=175.72  Aligned_cols=151  Identities=16%  Similarity=0.142  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------chhhhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY   78 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   78 (203)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+..++  ..+.+||+||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            5899999999999999999999876666667777777788888877  5889999999877653          345566


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           79 --RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                        ..+|++|+|+|+++.+....+..++      ...+.|+++|+||+|+.+..... .....+...++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l------~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQL------FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHH------TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHH------HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              8899999999999866544433332      23378999999999985433221 12455777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 ~i~~~~~~l~~~  168 (203)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2.2e-27  Score=165.64  Aligned_cols=154  Identities=21%  Similarity=0.237  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   77 (203)
                      ..++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||..++...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987642 23344555566677777777  46889999997643211        1135


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      ++.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+...       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999887765 34677777666556799999999999854221       11122467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.3e-26  Score=159.65  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhccC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG   80 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   80 (203)
                      .||+++|.+|+|||||+++|.+.... ....++.+.+.....+..++  ..+.+||+||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643 23334445556666676776  5789999999876       34445667899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCCHH
Q 028813           81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVE  159 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  159 (203)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    +...+++ .+++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999988543221 112222222   368999999999986542    2233444 5677 89999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=1.9e-26  Score=172.02  Aligned_cols=158  Identities=22%  Similarity=0.224  Sum_probs=122.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhc--
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--   78 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   78 (203)
                      +.++|+++|++|||||||+++|++........++.+.+.....+.+.+  ..+.+||+||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999999877666677777777777787777  5689999999887655      455555  


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      ..+|++++|+|+++...   ...|...+....  ..|+++|+||+|+.+....... ...+...++++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999987542   233333333321  2899999999997543332222 66677888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKDR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      +++|+++.+.+...
T Consensus       154 ~~l~~~i~~~~~~~  167 (271)
T 3k53_A          154 EELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=7.2e-27  Score=173.77  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=114.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhcc-
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR-   79 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   79 (203)
                      +.++|+++|.+|+|||||+++|++........++.+.+.....+  .. ...+.+||+||..++.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            46899999999999999999999876544445555444443333  33 4678999999988765      34455554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        80 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                       .+|++++|+|+++.+..   ..|...+..   .+.|+++++||+|+.....+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345555543   378999999999985433333 2456778888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          159 EQAFMAMAASI  169 (203)
Q Consensus       159 ~~~~~~l~~~~  169 (203)
                      +++|++|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=6.3e-27  Score=174.67  Aligned_cols=155  Identities=17%  Similarity=0.216  Sum_probs=118.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc----------chhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSS   76 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~   76 (203)
                      +.++|+++|.+|+|||||+|+|++........++.+.+.....+...+  ..+.+|||||..++..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            358999999999999999999999876656667777777777777766  5788999999877652          1222


Q ss_pred             hc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813           77 YY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        77 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      ++  ..+|++|+|+|+++.+....+..++...      +.|+++|+||+|+.+..... .....+...++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            32  7899999999999866554444333332      68999999999985433221 124567778899999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~  170 (203)
                      |.|+++++++|.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999877654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=6.4e-26  Score=160.86  Aligned_cols=157  Identities=17%  Similarity=0.215  Sum_probs=110.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (203)
                      ....++|+++|.+|+|||||+++|++.... ...++.+.+........+.   .+.+||+||          ...+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            356789999999999999999999987732 2233333333333333333   578999999          55566666


Q ss_pred             hhhccCC---cEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHhC-Cc
Q 028813           75 SSYYRGA---HGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEIG-IP  146 (203)
Q Consensus        75 ~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~-~~  146 (203)
                      ..++..+   |++++|+|+++..+  ...+..|+...      +.|+++|+||+|+.+...  ...+....++...+ ++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            6666655   99999999887533  23333344332      689999999999865432  22344455555534 79


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          147 FMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       147 ~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++++||++|.|++++|++|.+.+.+
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999988753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=6.3e-27  Score=189.64  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=124.1

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE------EEe--CCeEEEEEEEeCCCccccccchhh
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT------VEQ--DGKTIKLQIWDTAGQERFRTITSS   76 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~   76 (203)
                      ....+||+++|.+|||||||+++|.+..+.....++.+.++....      +..  ++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            356799999999999999999999998887777777776665442      112  233578999999999999998999


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST  156 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (203)
                      ++..+|++|+|+|+++.   +.+..|+..+..... +.|+++|+||+|+.+...+..+..++++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999999765   445678888876654 58999999999998777778888888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAASIKDR  172 (203)
Q Consensus       157 ~i~~~~~~l~~~~~~~  172 (203)
                      |+++++++|.+.+.+.
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999988654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=6.9e-27  Score=176.02  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---chhhhccCCcE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG   83 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   83 (203)
                      ||+++|..|||||||++++.+...+.   ...+|.+.+...  +  + ..+++.+|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   234566555442  2  2 347899999999999964   36789999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-------cCCHHHHHHHHHH----hCCcEEEe
Q 028813           84 IIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-------VVSYETAKAFADE----IGIPFMET  150 (203)
Q Consensus        84 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~----~~~~~~~~  150 (203)
                      +|+|||++++  .....+..|+..+.... .+.|+++++||+|+....       .+..++.+++++.    ++++++++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  33334444455554433 469999999999997642       3445555666664    57899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          151 SAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      ||++ .+|.++|..|.+.+.++.+
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 5899999999887654433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.93  E-value=5.7e-25  Score=174.21  Aligned_cols=179  Identities=21%  Similarity=0.266  Sum_probs=120.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYY   78 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   78 (203)
                      .+|+++|.||||||||+|+|++.... ....++.+.+.....+.+.+  ..+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 34455666666677777877  5688999999653         234456678


Q ss_pred             cCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH-HHHHHHhCC-cEEEeecCC
Q 028813           79 RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  154 (203)
                      +.+|++++|+|+.++.+..  .+..|+..      .++|+++|+||+|+.+.  . .... .++. .+++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754432  23333332      26899999999997432  0 1222 3333 4566 789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCCC-CCCCCCCcccccCCCCCCCCC
Q 028813          155 STNVEQAFMAMAASIKDRMASQPS-MNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      |.|+.+++++|.+.+.+....... .......++.+.+.++.+||+
T Consensus       150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKST  195 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKST  195 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHH
T ss_pred             CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHH
Confidence            999999999999988754311011 012345678888999888874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=1.5e-25  Score=162.42  Aligned_cols=162  Identities=14%  Similarity=0.138  Sum_probs=107.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCc----------cccccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTI   73 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~   73 (203)
                      ...++|+|+|.+|+|||||+++|++...  .....+..+.......+.. .....+.+|||||.          +.+...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4678999999999999999999998763  2223333333333333321 23367899999994          333444


Q ss_pred             hhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH------
Q 028813           74 TSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE------  142 (203)
Q Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~------  142 (203)
                      ...++..   +|++++|+|++++.+. ....++..+..   .+.|+++|+||+|+......  ..+.+.+....      
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            5555544   7889999999875432 22334444433   36899999999998654332  11222222222      


Q ss_pred             -hCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          143 -IGIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       143 -~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                       .+++++++||++|.|++++|++|.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence             457899999999999999999999988654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=4.2e-24  Score=165.08  Aligned_cols=163  Identities=17%  Similarity=0.181  Sum_probs=122.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc---------chhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   76 (203)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4668999999999999999999998764333333333344445555554  6889999999754321         1223


Q ss_pred             hccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC
Q 028813           77 YYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....  .+....++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998876  67777788888866544 689999999999865433  2445566667789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 028813          155 STNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~~  173 (203)
                      |.|+++++++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=8e-25  Score=173.97  Aligned_cols=157  Identities=20%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch--------hhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   77 (203)
                      ..++|+|+|.+|+|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||..++...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            357899999999999999999998753 334455566666667777877  789999999987655333        346


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      +..+|++++|+|++++.+++.+..+...+....  +.|+++|+||+|+.......   .+.+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence            789999999999998877654333333333332  68999999999997654331   2334433347899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIK  170 (203)
Q Consensus       158 i~~~~~~l~~~~~  170 (203)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999886

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=1.4e-24  Score=163.82  Aligned_cols=161  Identities=19%  Similarity=0.157  Sum_probs=111.4

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccc--------cc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FR   71 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~   71 (203)
                      |++. .+..+|+++|.+|+|||||+|+|++..+.. ...+.++.......+..++  .++.+|||||...        +.
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~   77 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD   77 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence            6665 566789999999999999999999987643 2333333333333333444  7899999999765        34


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH-hC-CcEE
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IG-IPFM  148 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~  148 (203)
                      .....+++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+......    +...... .+ .+++
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~  150 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPR  150 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEE
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEE
Confidence            45566789999999999998764432  2333 3454332 36899999999998654320    2222222 23 4789


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++||++|.|+++++++|.+.+.+
T Consensus       151 ~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          151 MLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEeCCCCCCHHHHHHHHHHhccc
Confidence            99999999999999999876643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=5.5e-25  Score=174.14  Aligned_cols=164  Identities=16%  Similarity=0.172  Sum_probs=116.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc----------ccccch
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT   74 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   74 (203)
                      +..++|+++|.+|+|||||+++|++.... ....++++.+.....+..++  ..+.+|||||..          .+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999987653 34445555565566777777  468999999973          332222


Q ss_pred             h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH-HHHHH----hCCcEE
Q 028813           75 S-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-AFADE----IGIPFM  148 (203)
Q Consensus        75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~  148 (203)
                      . .++..+|++++|+|++++.+.+.. .|+..+..   .+.|+++|+||+|+.+.+....++.. ++...    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 367889999999999998776654 46555543   36899999999999765544333332 22222    368999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      ++||++|.|++++|+.+.+.+.++...
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~  353 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLR  353 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999988776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=1.4e-24  Score=172.70  Aligned_cols=165  Identities=17%  Similarity=0.167  Sum_probs=120.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT   74 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   74 (203)
                      +..++|+++|.+|+|||||+++|++... .....++++.+.....+..++  ..+.+|||||          .+.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4678999999999999999999997652 334445555555556666777  4889999999          45554443


Q ss_pred             h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-----CCcEE
Q 028813           75 S-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFM  148 (203)
Q Consensus        75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  148 (203)
                      . .+++.+|++++|+|++++... ....|...+..   .++|+++|+||+|+.+.+....++..+.+...     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 367889999999999875432 22344444433   36899999999999876666666666666554     58999


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHHhccC
Q 028813          149 ETSAKDSTNVEQAFMAMAASIKDRMASQ  176 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  176 (203)
                      ++||++|.|++++|+++.+.+.++....
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~  374 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSLRV  374 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999999887776543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.3e-25  Score=162.24  Aligned_cols=144  Identities=19%  Similarity=0.294  Sum_probs=105.1

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC-
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG-   80 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   80 (203)
                      ..+.++|+++|++|+|||||+++|.+..+...   +.++.+..+         ....+.+||+||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            45789999999999999999999998775432   223322221         33678999999999998888888877 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCccCC------HHHHHHHHHHhCCc
Q 028813           81 ---AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVS------YETAKAFADEIGIP  146 (203)
Q Consensus        81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  146 (203)
                         +|++|+|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.......      .++...++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888888776443    34579999999999997665432      34456666777789


Q ss_pred             EEEeecCCCCC
Q 028813          147 FMETSAKDSTN  157 (203)
Q Consensus       147 ~~~~Sa~~~~~  157 (203)
                      ++++|++++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=7.6e-25  Score=171.50  Aligned_cols=160  Identities=15%  Similarity=0.156  Sum_probs=116.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hh
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS   75 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   75 (203)
                      +....++|+|+|.+++|||||+++|++..+. .+..++.+.+.....+...+. ..+.+|||||+..+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            3467899999999999999999999987763 344455555666666766653 28899999998876544       34


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCC
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS  155 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (203)
                      .++..+|++|+|+|+....   ....|+..+...   +.|+++|+||+|+......  +..++++..++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            4788999999999994333   335566666544   6899999999999766543  5566666677899999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIKDR  172 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~~  172 (203)
                      .|++++|++|.+.+.+.
T Consensus       181 ~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          181 KGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TSTTTHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHhhhhh
Confidence            99999999999988554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=1.3e-24  Score=166.05  Aligned_cols=159  Identities=18%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhhhc---cCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYY---RGA   81 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   81 (203)
                      .+|+|+|.+|||||||+++|++........+.++.......+.+++. ..+.+||+||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999976543233333333344444555432 4789999999543    333444444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCC
Q 028813           82 HGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKD  154 (203)
Q Consensus        82 d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  154 (203)
                      |++|+|+|+++   +++++.+..|+.++..+..  ..+|+++|+||+|+....    +..+++...+.  ++++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7888888899998877643  478999999999986432    34556666666  7899999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIKDR  172 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~  172 (203)
                      +.|+++++++|.+.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          314 REGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=1.8e-23  Score=166.91  Aligned_cols=158  Identities=16%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhh
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS-------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS   76 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   76 (203)
                      ..+..++|+++|.+++|||||+++|++..       ...+..++.+.+.....+..++  ..+.+||+||+++|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            34678999999999999999999999866       2233334444444444455555  78999999999999888888


Q ss_pred             hccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHHHHh----CCcE
Q 028813           77 YYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKAFADEI----GIPF  147 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~  147 (203)
                      .+..+|++|+|+|+++   +.+.+.+    ..+..   .+.|+++++||+|+.+...  ...+++.++....    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            8999999999999987   3443332    22322   2678899999999975321  1123344555544    5789


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      +++||++|.|+++++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999999876

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=1e-23  Score=167.70  Aligned_cols=153  Identities=24%  Similarity=0.262  Sum_probs=115.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc-cccc--------chhhh
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSY   77 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   77 (203)
                      .++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998753 244455666667777777877  678999999987 5432        23456


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      +..+|++|+|+|++++.+.+... ++..+     .++|+++|+||+|+.+.  ...+++..+. ..+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            78999999999999887665432 22222     26899999999999653  3444444443 2347899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKD  171 (203)
Q Consensus       158 i~~~~~~l~~~~~~  171 (203)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=3.5e-24  Score=169.56  Aligned_cols=178  Identities=18%  Similarity=0.159  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhhhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYY   78 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~   78 (203)
                      ..+|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+.+  ..+.+|||||..        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987653 22334444444444444444  578999999975        5566677788


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCCCCC
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTN  157 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  157 (203)
                      ..+|++|+|+|+.++.+.... .+...+   ...++|+++|+||+|+.+....    ..++. ..++ +++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l---~~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE-EVAKIL---YRTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH-HHHHHH---TTCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            999999999999886554321 222223   2347899999999998653211    11122 3455 789999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          158 VEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       158 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      +.+++++|.+.+.+..   .......+.++.+.+.++.+||+
T Consensus       152 v~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~~nvGKSS  190 (436)
T 2hjg_A          152 LGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKSS  190 (436)
T ss_dssp             HHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECSTTSSHHH
T ss_pred             hHHHHHHHHHhcCccc---cccccccCcEEEEEcCCCCCHHH
Confidence            9999999998875321   11123456788888999988874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=4.4e-22  Score=145.80  Aligned_cols=165  Identities=15%  Similarity=0.170  Sum_probs=109.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--cceeeeEEEEEEeCCeEEEEEEEeCCCcc-----------ccc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----------RFR   71 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~   71 (203)
                      .+..++|+|+|.+|+|||||+++|++........+  +.+.......+.+++  ..+.+|||||..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            45789999999999999999999999887655544  445555666666776  688999999943           333


Q ss_pred             cchhhhccCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC------HHHHHHHHHHh
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS------YETAKAFADEI  143 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~  143 (203)
                      ..+...+..+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+.++.+....
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            334445678899999999875432  22222222222111  135899999999986554332      23567778888


Q ss_pred             CCcEEEeecCCC-----CCHHHHHHHHHHHHHHHh
Q 028813          144 GIPFMETSAKDS-----TNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       144 ~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~  173 (203)
                      +..++.++...+     .++.+++..+.+.+.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            888888877654     689999998888776543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1.9e-22  Score=158.14  Aligned_cols=164  Identities=15%  Similarity=0.189  Sum_probs=115.2

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEE----------------EEEe---CCeEEEEEEEeC
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR----------------TVEQ---DGKTIKLQIWDT   64 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~i~D~   64 (203)
                      .....++|+++|.+++|||||+++|++.......... ..+....                ....   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            4567899999999999999999999985432211000 0000000                0000   112368999999


Q ss_pred             CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHH
Q 028813           65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADE  142 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~  142 (203)
                      ||++++...+...+..+|++|+|+|++++.+.....+++..+....  ..|+++++||+|+.+....  ..+++.++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999888899999999999999998766666677776665543  2589999999999654321  11222222222


Q ss_pred             h---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          143 I---GIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       143 ~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      .   +++++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2   578999999999999999999987664

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=1.2e-22  Score=153.41  Aligned_cols=160  Identities=17%  Similarity=0.148  Sum_probs=110.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCcc---------ccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~   74 (203)
                      ..+..+|+|+|++|+|||||+++|++..... ...+.++.......+..++  .++.+|||||..         .+....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence            3456689999999999999999999876532 2222222222333344444  688999999986         234445


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecC
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAK  153 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
                      ...+..+|++++|+|+++ -+  ....++.  ......+.|+++++||+|+........+.+.++...+++ .++++||+
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~--~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WT--PDDEMVL--NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CC--HHHHHHH--HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHhcCCEEEEEEeCCC-CC--HHHHHHH--HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            667889999999999976 22  2222332  222234689999999999865322223445555555665 69999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~  171 (203)
                      ++.|+++++++|.+.+.+
T Consensus       158 ~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTTHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhCCc
Confidence            999999999999876643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=2.5e-22  Score=157.72  Aligned_cols=164  Identities=19%  Similarity=0.208  Sum_probs=103.9

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccc--cceeeeEEEEEEe-------------C--C----eEEEEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ   60 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   60 (203)
                      +...++|+++|+.++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3467999999999999999999998643   2233333  2222233222211             1  1    137899


Q ss_pred             EEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHH
Q 028813           61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKA  138 (203)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~  138 (203)
                      +||+||+++|...+...+..+|++|+|+|++++....+..+.+..+....  ..|+++++||+|+.+...  ...+++.+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            99999999988777777888999999999995421111122222232221  257999999999976543  23455566


Q ss_pred             HHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          139 FADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       139 ~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6554   3579999999999999999999987654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=3.9e-22  Score=153.87  Aligned_cols=160  Identities=17%  Similarity=0.132  Sum_probs=111.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhccC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYRG   80 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~   80 (203)
                      .|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+.+|||+|..+         +... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            499999999999999999998776444445555566677788887  5789999999622         2222 224688


Q ss_pred             CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHh---CCcEEEeecCC
Q 028813           81 AHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEI---GIPFMETSAKD  154 (203)
Q Consensus        81 ~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~  154 (203)
                      +|++++|+|++++.  ....+..|...+......+.|+++|+||+|+...... ..+....++..+   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  5556666666666655557899999999998654310 011222333444   24789999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIKDR  172 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~  172 (203)
                      +.|+++++++|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=1.4e-22  Score=164.76  Aligned_cols=158  Identities=23%  Similarity=0.288  Sum_probs=111.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----C------ccccceeeeE--EEEEEe---CCeEEEEEEEeCCCcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIE-----S------YISTIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQE   68 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~------~~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~   68 (203)
                      +..+|+|+|+.++|||||+++|+...  ...     .      .+...+.++.  ...+.+   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            56899999999999999999998521  110     0      0011122222  222222   4556899999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC---
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI---  145 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---  145 (203)
                      +|...+...+..+|++|+|+|++++.+.+....|.....    .+.|+++|+||+|+...+  ......++...+++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            998888899999999999999998777677667765553    268999999999997643  23344566666676   


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          146 PFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       146 ~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      +++++||++|.|+++++++|.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence            4999999999999999999988765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=1.7e-22  Score=149.71  Aligned_cols=165  Identities=14%  Similarity=0.121  Sum_probs=108.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccc-ceeeeEEEEEEeCCeEEEEEEEeCCCccccccc---------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---------   73 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------   73 (203)
                      .+..++|+|+|.+|||||||+++|++... .....++ .+.......+.+++  ..+.+|||||...+...         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34679999999999999999999998773 3333333 44455555666666  68999999997654322         


Q ss_pred             --hhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCccCCH-------HHHHHHHHH
Q 028813           74 --TSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGN-KCDLTANKVVSY-------ETAKAFADE  142 (203)
Q Consensus        74 --~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~n-K~D~~~~~~~~~-------~~~~~~~~~  142 (203)
                        ....++.+|++|+|+|+++... ...+..++..+.... ...|.++++| |+|+.... ...       ..+..+...
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence              1225688999999999986222 122223333321111 1356677776 99997432 111       223345555


Q ss_pred             hCCc---E--EEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          143 IGIP---F--METSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       143 ~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      .+..   +  +++||+++.|++++|.+|.+.+....
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            5432   2  78999999999999999999887643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=2e-23  Score=165.45  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=105.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch--------hhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSY   77 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   77 (203)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4578999999999999999999986542 34445555556556666777  678999999976543332        235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC
Q 028813           78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN  157 (203)
Q Consensus        78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (203)
                      +..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ..+.+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998765443 34444442     36999999999997654332  111111  357899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKDR  172 (203)
Q Consensus       158 i~~~~~~l~~~~~~~  172 (203)
                      +++++++|.+.+...
T Consensus       371 i~eL~~~i~~~~~~~  385 (462)
T 3geh_A          371 IDSLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=2e-22  Score=159.36  Aligned_cols=154  Identities=18%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeC
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQD   53 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (203)
                      ....++|+++|.+++|||||+++|++...                               ..+..++.+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35679999999999999999999964311                               11222344555555555555


Q ss_pred             CeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 028813           54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLT  126 (203)
Q Consensus        54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~  126 (203)
                      +  ..+.||||||+++|...+...+..+|++|+|+|++++..   ++   ...+.+..+.   ..+.| +++++||+|+.
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDP  168 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCCCc
Confidence            4  689999999999998888888999999999999987532   11   1122222222   22566 89999999985


Q ss_pred             CCc--c----CCHHHHHHHHHHhC------CcEEEeecCCCCCHHHHHH
Q 028813          127 ANK--V----VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       127 ~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ...  +    ...+++..++...+      ++++++||++|.|+.++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            421  1    11223344444444      5799999999999999766

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=2.8e-22  Score=162.70  Aligned_cols=159  Identities=22%  Similarity=0.295  Sum_probs=114.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CccccceeeeEEEEEEe---CCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   67 (203)
                      ++..+|+++|+.++|||||+++|+...  ...             +.....++......+.+   ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            467899999999999999999997521  110             00111111111122222   455689999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC--
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI--  145 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--  145 (203)
                      .+|...+...+..+|++|+|+|++++.+.+....|.....    .+.|+++++||+|+...+  ......++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888888999999999999999877777777766543    368999999999996543  22334556666676  


Q ss_pred             -cEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          146 -PFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       146 -~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                       +++++||++|.|+++++++|.+.+.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcc
Confidence             4999999999999999999988775

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=3.3e-22  Score=157.13  Aligned_cols=164  Identities=18%  Similarity=0.217  Sum_probs=110.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccee--eeEEEEEEe-------------C--C----eEEEEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGV--DFKIRTVEQ-------------D--G----KTIKLQ   60 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~   60 (203)
                      +...++|+++|++++|||||+++|++..   ...+..+..+.  .+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4577999999999999999999999643   23333342233  222222211             1  1    137899


Q ss_pred             EEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--CCHHHHHH
Q 028813           61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKA  138 (203)
Q Consensus        61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~  138 (203)
                      +||+||+.+|.......+..+|++|+|+|++++.......+.+..+....  ..|+++++||+|+.+...  ...+++.+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~  164 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  164 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence            99999999987777777788999999999996421111122222233222  257999999999875432  12234444


Q ss_pred             HHHH---hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          139 FADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       139 ~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      +...   .+++++++||++|.|+++++++|.+.+.
T Consensus       165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            4443   3579999999999999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=5.3e-23  Score=153.58  Aligned_cols=161  Identities=17%  Similarity=0.229  Sum_probs=93.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-c-------cccceeeeEEEEEEeCCeEEEEEEEeCCCcccc------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-Y-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------   70 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------   70 (203)
                      ....++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34679999999999999999999887654333 2       455555566666666666679999999996322      


Q ss_pred             -ccch-------hhhc-------------cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           71 -RTIT-------SSYY-------------RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        71 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                       ..+.       ..++             ..+|+++++++.+.......-..++..+..    ++|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence             2211       2222             237789999976652211111233444432    68999999999986433


Q ss_pred             cCC--HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          130 VVS--YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       130 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ...  .+.+.+.....+++++.+|+.++.|+.+++++|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            221  1234455556789999999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=1.1e-22  Score=162.72  Aligned_cols=152  Identities=17%  Similarity=0.145  Sum_probs=99.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...+||+++|.+++|||||+++|++...                               ..+...+.+.+.....+... 
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence            4579999999999999999999975411                               11112233333333344444 


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN------NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                       ...+.||||||+++|...+...+..+|++|+|+|++++....      ...+.+..+....  ..|+++|+||+|+.+.
T Consensus       110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred             -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence             378999999999999998999999999999999999864321      2222222222221  2469999999999764


Q ss_pred             ccCCHHHH----HHHHHHh-----CCcEEEeecCCCCCHHHH
Q 028813          129 KVVSYETA----KAFADEI-----GIPFMETSAKDSTNVEQA  161 (203)
Q Consensus       129 ~~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~~  161 (203)
                      +....+++    ..+....     +++++++||++|.|+.++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33333333    3333333     357999999999999853

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=3.1e-22  Score=153.50  Aligned_cols=125  Identities=22%  Similarity=0.260  Sum_probs=101.2

Q ss_pred             EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813           46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV  114 (203)
Q Consensus        46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~  114 (203)
                      ....+.+++  +.+.+||++|+++++..|..++++++++|||+|+++          ..++.+...|+..+... ...+.
T Consensus       184 ~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~  261 (353)
T 1cip_A          184 VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT  261 (353)
T ss_dssp             EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             EEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence            344555654  889999999999999999999999999999999998          45688888888777542 23569


Q ss_pred             cEEEEEeCCCCCCCc---------------cCCHHHHHHHHH-----------HhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          115 NKLLVGNKCDLTANK---------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       115 p~ilv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++|++||.|+...+               ....++...++.           ..++.+++|||+++.||.++|.++.+.
T Consensus       262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~  341 (353)
T 1cip_A          262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  341 (353)
T ss_dssp             EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence            999999999984322               245677777765           346789999999999999999999998


Q ss_pred             HHHH
Q 028813          169 IKDR  172 (203)
Q Consensus       169 ~~~~  172 (203)
                      +.+.
T Consensus       342 i~~~  345 (353)
T 1cip_A          342 IIKN  345 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=7e-22  Score=156.52  Aligned_cols=163  Identities=24%  Similarity=0.232  Sum_probs=109.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccch----------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----------   74 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   74 (203)
                      +..++|+++|++|||||||+++|++.... ....++++.+.....+.+++  ..+.+|||+|..+.....          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence            35689999999999999999999987642 23344444455556677777  467899999975332211          


Q ss_pred             --hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHH-HHHH----HhCCcE
Q 028813           75 --SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-AFAD----EIGIPF  147 (203)
Q Consensus        75 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~  147 (203)
                        ...+..+|++++++|+.++.+.... .+...+..   .+.|+++|+||+|+.+.+....++.. .+..    ..++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence              2346778999999999876554332 22222222   36899999999999765543333332 2222    235799


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          148 METSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      +++||++|.|++++|+.+.+.+.++..
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~  358 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASYTT  358 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence            999999999999999999988877644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=3.7e-23  Score=164.60  Aligned_cols=181  Identities=18%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCC--------ccccccchh
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITS   75 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~   75 (203)
                      .+...+|+|+|.+|||||||+|+|++.... ....++.+.+.....+  ......+.+|||||        ..++.....
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            355789999999999999999999987653 2222333333333333  33336899999999        666777778


Q ss_pred             hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCC-cEEEeecCC
Q 028813           76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKD  154 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (203)
                      .++..+|++|+|+|+.++.+..  ..++..+  ....++|+++|+||+|+.+...    ...++. ..+. .++++||.+
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~--d~~l~~~--l~~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~  168 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAA--DEEVAKI--LYRTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTH  168 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHH--HHHHHHH--HTTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred             hhHhhCCEEEEEEeCCCCCChH--HHHHHHH--HHHcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeeccc
Confidence            8889999999999987643322  2222222  2235789999999999854321    111111 2333 578999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCCC
Q 028813          155 STNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      |.|+.++++++.+.+...   ..........++.+.+.++.+||.
T Consensus       169 g~gv~~L~~~i~~~l~~~---~~~~~~~~~~ki~ivG~~~vGKSs  210 (456)
T 4dcu_A          169 GLGLGDLLDAVAEHFKNI---PETKYNEEVIQFCLIGRPNVGKSS  210 (456)
T ss_dssp             CTTHHHHHHHHHTTGGGS---CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred             ccchHHHHHHHHhhcccc---cccccccccceeEEecCCCCCHHH
Confidence            999999999998766432   112234456778888888888763

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=1.8e-24  Score=173.42  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.++|+++|++++|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            568899999999999999999997665444445544444433343321 2478999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHH---HHHh--CCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAF---ADEI--GIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  160 (203)
                      |+|++++...+..    ..+......+.|+++++||+|+.+..... ...+..+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986543332    22333334478999999999986532211 1111111   1111  25799999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          161 AFMAMAASIK  170 (203)
Q Consensus       161 ~~~~l~~~~~  170 (203)
                      ++++|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=5.1e-22  Score=159.77  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC------------------CC----CCccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS------------------YI----ESYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+..+|+|+|.+|+|||||+++|+...                  ..    .+...+.+.......+.+.+  +.+.+||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            457899999999999999999996211                  00    00012223333444555555  7899999


Q ss_pred             CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      |||+.++...+..++..+|++|+|+|++++........|. .+   ...++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~---~~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VC---RLRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HH---HTTTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HH---HHcCCCEEEEEeCCCCccc
Confidence            9999999998999999999999999999876655544443 22   2336899999999998643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=9.3e-22  Score=152.13  Aligned_cols=147  Identities=7%  Similarity=0.073  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      +|+++|.+++|||||+++|+        ....+.+.....+..++  ..+.+|||||+.+|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        22223333334444444  679999999999987777778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCccCCH--HHHHHHHHHhC---CcEEE--eecCC---CCC
Q 028813           90 VTDQESFNNVKQWLNEIDRYASDNVNK-LLVGN-KCDLTANKVVSY--ETAKAFADEIG---IPFME--TSAKD---STN  157 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~  157 (203)
                       ++. ...+..+++..+...   +.|. ++++| |+|+ +.+....  ++++++...++   +++++  +||++   +.|
T Consensus        93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             543 344445555555433   5676 88999 9998 4322211  34444444433   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028813          158 VEQAFMAMAASIKDR  172 (203)
Q Consensus       158 i~~~~~~l~~~~~~~  172 (203)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1.5e-21  Score=154.37  Aligned_cols=153  Identities=22%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------cc---------------------ccceeeeEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IES----------YI---------------------STIGVDFKIRTVEQ   52 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~----------~~---------------------~~~~~~~~~~~~~~   52 (203)
                      ...++|+++|.+++|||||+++|++...  ...          ..                     .+.+.+.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4679999999999999999999985431  000          00                     11122222233333


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-
Q 028813           53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-  131 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-  131 (203)
                      ++  ..+.+|||||+++|...+...+..+|++|+|+|++++.. ....+++..+....  ..|+++|+||+|+.+.... 
T Consensus       102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHH
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHH
Confidence            33  689999999999998888888999999999999998643 22334444443321  2368999999999753211 


Q ss_pred             ---CHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813          132 ---SYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       132 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  163 (203)
                         ..+++..++..++     ++++++||++|.|+.++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence               1234555666666     6899999999999998544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=1.6e-22  Score=159.98  Aligned_cols=155  Identities=18%  Similarity=0.190  Sum_probs=103.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------ccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIES-----------------------------YISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|++++|||||+++|++.  .+...                             ...+.+.+.....+... 
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence            36799999999999999999999864  22111                             01222333333334333 


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhh----cCCC-CcEEEEEeCCCCCCCc
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDN-VNKLLVGNKCDLTANK  129 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~p~ilv~nK~D~~~~~  129 (203)
                       ...+.+|||||+.+|...+...+..+|++|+|+|+++ .+++.+..|..+...+    ...+ .|+++++||+|+.+..
T Consensus        83 -~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           83 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence             3789999999999998888889999999999999998 5565443322222111    1113 3689999999996521


Q ss_pred             --c----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHHHH
Q 028813          130 --V----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       130 --~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  163 (203)
                        +    ...+++..++..++     ++++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence              1    12344566666665     6799999999999987654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=4.4e-21  Score=145.21  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=99.6

Q ss_pred             eEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCC
Q 028813           45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDN  113 (203)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~  113 (203)
                      +....+..++  +.+.+||++|+++++..|..++++++++|||+|++          +..++.+...|+..+... ...+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            4445566665  89999999999999999999999999999999665          566777777777766432 2357


Q ss_pred             CcEEEEEeCCCCCCCc----------------cCCHHHHHHHHH----------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          114 VNKLLVGNKCDLTANK----------------VVSYETAKAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       114 ~p~ilv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      .|++|++||.|+.+.+                ....++..++..          ..++.++++||+++.||+++|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            8999999999985432                356666666632          34577899999999999999999999


Q ss_pred             HHHHHh
Q 028813          168 SIKDRM  173 (203)
Q Consensus       168 ~~~~~~  173 (203)
                      .+.+..
T Consensus       315 ~Il~~~  320 (327)
T 3ohm_A          315 TILQLN  320 (327)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            987653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=2e-22  Score=155.55  Aligned_cols=163  Identities=21%  Similarity=0.337  Sum_probs=90.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccc--------ccceeeeEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   69 (203)
                      ...++|+|+|++|+|||||+++|++..... ...        ++.+.......+...+....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654322 211        33333333333444555678999999998       55


Q ss_pred             cccchh-------hhccC-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           70 FRTITS-------SYYRG-------------AHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      +..++.       .++..             +|+++|+++.. ..++..+. .++..+    ..+.|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            655554       44433             24566666542 22333332 333333    357899999999999765


Q ss_pred             ccCCH--HHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhc
Q 028813          129 KVVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  174 (203)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  174 (203)
                      +.+..  +.+..++..++++++++||+++.+ ++.|.++.+.+.+..+
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            54333  455666667789999999999999 9999999988876544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.86  E-value=3.8e-21  Score=147.97  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=93.5

Q ss_pred             EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813           46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV  114 (203)
Q Consensus        46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~  114 (203)
                      ....+.+++  +.+.+||++|+++++..|..++++++++|||+|+++          ..++.....|+..+... ...+.
T Consensus       192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~  269 (362)
T 1zcb_A          192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  269 (362)
T ss_dssp             EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence            334455555  889999999999999999999999999999999998          67888888888877543 33578


Q ss_pred             cEEEEEeCCCCCCCc----------------cCCHHHHHHHHH-----------HhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          115 NKLLVGNKCDLTANK----------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       115 p~ilv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++|++||.|+.+.+                ....++...++.           ..++.+++|||+++.||+++|.++.+
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999985321                245666666551           34578999999999999999999999


Q ss_pred             HHHHHh
Q 028813          168 SIKDRM  173 (203)
Q Consensus       168 ~~~~~~  173 (203)
                      .+.+..
T Consensus       350 ~i~~~~  355 (362)
T 1zcb_A          350 TILHDN  355 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887554

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=3.1e-21  Score=150.97  Aligned_cols=159  Identities=17%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS-------YIES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT   72 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   72 (203)
                      ..++|+++|++++|||||+++|++..       +...       .....+.+.......+......+.+|||||+.+|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998631       1000       001112222222333333346899999999999888


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCcc---CCHHHHHHHHHHhC----
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV---VSYETAKAFADEIG----  144 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~----  144 (203)
                      .+...+..+|++|+|+|+++....+.. +++..+..   .+.| +++++||+|+.+...   ...+++.+++..++    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999985433332 22333332   2578 689999999865221   11234556666665    


Q ss_pred             -CcEEEeecCCCCC----------HHHHHHHHHHHH
Q 028813          145 -IPFMETSAKDSTN----------VEQAFMAMAASI  169 (203)
Q Consensus       145 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~  169 (203)
                       ++++++||++|.|          +.++++.|.+.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             5899999999764          777777776654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=1.3e-21  Score=153.63  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------ccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ...++|+++|++++|||||+++|++.        .+...         ...+.+.+.....+..  ....+.+|||||+.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc--CCeEEEEEECCChH
Confidence            46799999999999999999999863        11100         0122233333333333  33688999999999


Q ss_pred             ccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC
Q 028813           69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG  144 (203)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~  144 (203)
                      +|...+...+..+|++|+|+|++++... ...+++..+...   +.| +++++||+|+.+....   ..+++.+++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            9988888889999999999999886532 334555555433   577 8899999999743211   1224555666655


Q ss_pred             -----CcEEEeecCCCCC
Q 028813          145 -----IPFMETSAKDSTN  157 (203)
Q Consensus       145 -----~~~~~~Sa~~~~~  157 (203)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999987

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=8.5e-21  Score=154.42  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=106.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC----------------CeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~   69 (203)
                      .+.++|+++|++++|||||+++|++...........+.+.........                .....+.||||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            356899999999999999999998754422211111111111111110                0112589999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-------------CH
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-------------SY  133 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-------------~~  133 (203)
                      |...+...+..+|++|+|+|+++   +.+++.+.    .+..   .+.|+++++||+|+......             ..
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99888888999999999999998   55544332    2222   36899999999998642110             00


Q ss_pred             H----------HHHHHHHHhC---------------CcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          134 E----------TAKAFADEIG---------------IPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       134 ~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      .          ++.....+.+               ++++++||++|.|+++++++|...+....
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence            0          1111111112               37999999999999999999998876543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.6e-21  Score=138.10  Aligned_cols=115  Identities=23%  Similarity=0.363  Sum_probs=87.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccC--
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG--   80 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   80 (203)
                      .+.++|+++|++|||||||+++|.+..+..   ...++.+.+       +  ....+.+||+||...+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C--CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e--cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            567899999999999999999999876543   112222211       1  23678999999999888777777765  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCc
Q 028813           81 --AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        81 --~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~D~~~~~  129 (203)
                        +|++|+|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 889998888888776433    33579999999999997654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=4.2e-21  Score=147.23  Aligned_cols=119  Identities=19%  Similarity=0.282  Sum_probs=92.2

Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKC  123 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~  123 (203)
                      ..+.+.+||++|+++++..|..++++++++|+|+|++          +..+++....|+..+... ...+.|++||+||.
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          778898888888877543 23578999999999


Q ss_pred             CCCCCcc--C-------------------CHHHHHHHHHH----------------hCCcEEEeecCCCCCHHHHHHHHH
Q 028813          124 DLTANKV--V-------------------SYETAKAFADE----------------IGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus       124 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |+.+.+.  .                   ..++...++..                ..+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   13445555332                124568999999999999999999


Q ss_pred             HHHHHHh
Q 028813          167 ASIKDRM  173 (203)
Q Consensus       167 ~~~~~~~  173 (203)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=4.5e-22  Score=158.47  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------------------------SYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|++++|||||+++|++.  .+..                             +.....+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            46789999999999999999999742  1110                             0011222222223344444


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc-
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK-  129 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~-  129 (203)
                        ..+.||||||+.+|...+...+..+|++|+|+|++++.   +|+...++...+......+.| +++++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              68999999999999888888899999999999999863   222112222222222223577 99999999995421 


Q ss_pred             -c----CCHHHHHHHHHHh-------CCcEEEeecCCCCCHHHHH
Q 028813          130 -V----VSYETAKAFADEI-------GIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus       130 -~----~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  162 (203)
                       .    ...+++..++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             1    1122455555555       3569999999999998866

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-21  Score=159.81  Aligned_cols=155  Identities=19%  Similarity=0.146  Sum_probs=103.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-------------------------------ISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|.+++|||||+++|++.......                               .++.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999999865321110                               12333333334444444


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCcc
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASDN-VNKLLVGNKCDLTANKV  130 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~-~p~ilv~nK~D~~~~~~  130 (203)
                        ..+.||||||+.+|...+...+..+|++|+|+|++++..   +....++...+......+ .|+++|+||+|+.+...
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence              689999999999998888889999999999999987421   000111222221112223 45999999999976332


Q ss_pred             CCHH----HHHHHHHHhC-----CcEEEeecCCCCCHHHHH
Q 028813          131 VSYE----TAKAFADEIG-----IPFMETSAKDSTNVEQAF  162 (203)
Q Consensus       131 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  162 (203)
                      ...+    .+..+....+     ++++++||++|.|+.++.
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            2222    2333444443     589999999999999773

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=2.4e-23  Score=165.70  Aligned_cols=156  Identities=18%  Similarity=0.214  Sum_probs=106.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++..+|+++|++++|||||+++|.+........++.+.+.....+..++  ..+.||||||+..|...+...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987554433333333333222333344  57899999999999998888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cCCHH--HHHHHHHHhC--CcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYE--TAKAFADEIG--IPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~  159 (203)
                      +|+|++++...+.. +.+..+.   ..+.|+++++||+|+.+.+  .+..+  ....+...++  ++++++||++|.|++
T Consensus        80 LVVda~~g~~~qT~-e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQTI-EAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTTTH-HHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHHHH-HHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99999874321111 1222222   2368999999999996431  11100  0000111222  689999999999999


Q ss_pred             HHHHHHHH
Q 028813          160 QAFMAMAA  167 (203)
Q Consensus       160 ~~~~~l~~  167 (203)
                      +++++|..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99999864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=1.3e-21  Score=155.44  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccccceeeeEEEE
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------------------------SYISTIGVDFKIRT   49 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~   49 (203)
                      |.. ....++|+++|.+++|||||+++|++.  .+..                             +...+.+.+.....
T Consensus         1 M~~-~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~   79 (458)
T 1f60_A            1 MGK-EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK   79 (458)
T ss_dssp             -CC-CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE
T ss_pred             CCC-CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE
Confidence            553 346799999999999999999999863  1110                             00122233333334


Q ss_pred             EEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeC
Q 028813           50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNK  122 (203)
Q Consensus        50 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK  122 (203)
                      +..++  ..+.+|||||+.+|...+...+..+|++|+|+|++++..   ++   ...+++..+..   .+.| +++++||
T Consensus        80 ~~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK  154 (458)
T 1f60_A           80 FETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNK  154 (458)
T ss_dssp             EECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEEC
T ss_pred             EecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEc
Confidence            44444  789999999999998888889999999999999987531   21   22222222322   2455 8999999


Q ss_pred             CCCCCCcc----CCHHHHHHHHHHhC-----CcEEEeecCCCCCHHHH
Q 028813          123 CDLTANKV----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQA  161 (203)
Q Consensus       123 ~D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  161 (203)
                      +|+.+...    ...+++..++..++     ++++++||++|.|+.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            99964211    11234455555555     68999999999999765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=7.2e-21  Score=143.64  Aligned_cols=161  Identities=17%  Similarity=0.174  Sum_probs=102.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccc----------------------ceee-------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------IST----------------------IGVD-------------   44 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~----------------------~~~~-------------   44 (203)
                      ...++|+|+|.+|||||||+++|++..+.+..      .++                      ++.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            46789999999999999999999987763211      121                      0000             


Q ss_pred             --------e--EEEEEEeCCeEEEEEEEeCCCcc-------------ccccchhhhccCCcEEE-EEEECCChhhHHHHH
Q 028813           45 --------F--KIRTVEQDGKTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVK  100 (203)
Q Consensus        45 --------~--~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  100 (203)
                              .  ....+... ....+.+|||||..             .+......++..++.+| +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                    0  00000000 02578999999964             23445666778888766 799998754433333


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHH--hC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE--IG-IPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      .++..+   ...+.|+++|+||+|+.+......+.++.....  .+ .+++++||++|.|+++++++|.+...
T Consensus       183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            344433   345789999999999976543222322211001  12 36889999999999999999987443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=3.5e-20  Score=132.91  Aligned_cols=157  Identities=15%  Similarity=0.205  Sum_probs=97.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----------cccchh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITS   75 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~   75 (203)
                      ....+|+++|++|||||||+++|.+..+.....++.+.......+.+++   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            3457899999999999999999998763333333333333333333333   567999999642          222222


Q ss_pred             hhc---cCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhC--Cc
Q 028813           76 SYY---RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIG--IP  146 (203)
Q Consensus        76 ~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~  146 (203)
                      .++   ..++++++++|+.++.+..  .+..|+.      ..+.|+++++||+|+......  ..+.+..++...+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            333   4689999999998765432  2233332      126889999999998653211  1234444444443  57


Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          147 FMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       147 ~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++++|++++.|+++++++|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999887644

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=1.9e-20  Score=159.41  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-------YIE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ....++|+++|++++|||||+++|++..       +..       ......++++....+.++.....+.+|||||+.+|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567999999999999999999998631       000       00112222222222233334478999999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccC---CHHHHHHHHHHhC--
Q 028813           71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKAFADEIG--  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~--  144 (203)
                      .......+..+|++|+|+|++++... +..+++..+...   ++| +++++||+|+.+....   ..+++..++..++  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888889999999999999886432 223444444333   577 7899999999753221   1234556666665  


Q ss_pred             ---CcEEEeecCCC--------CCHHHHHHHHHHHH
Q 028813          145 ---IPFMETSAKDS--------TNVEQAFMAMAASI  169 (203)
Q Consensus       145 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~~  169 (203)
                         ++++++||++|        .|+.++++.|.+.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence               68999999999        35777777766544

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=6.7e-20  Score=139.22  Aligned_cols=124  Identities=19%  Similarity=0.197  Sum_probs=96.3

Q ss_pred             EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-cCCCC
Q 028813           46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDNV  114 (203)
Q Consensus        46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~  114 (203)
                      ....+..++  +.+.+||++|+++++..|..++++++++|||+|++          +..++.+...|+..+... ...+.
T Consensus       152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~  229 (340)
T 4fid_A          152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA  229 (340)
T ss_dssp             EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence            444455544  78999999999999999999999999999999998          677888888877776433 33578


Q ss_pred             cEEEEEeCCCCCCCc---------------cCCHHHHHHHH-HHh--------------------------CCcEEEeec
Q 028813          115 NKLLVGNKCDLTANK---------------VVSYETAKAFA-DEI--------------------------GIPFMETSA  152 (203)
Q Consensus       115 p~ilv~nK~D~~~~~---------------~~~~~~~~~~~-~~~--------------------------~~~~~~~Sa  152 (203)
                      |++|++||.|+.+.+               ....++..++. .++                          .+.++++||
T Consensus       230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA  309 (340)
T 4fid_A          230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA  309 (340)
T ss_dssp             EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred             eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence            999999999984311               01344443333 222                          377899999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~  171 (203)
                      +++.+|+.+|..+.+.+.+
T Consensus       310 ~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          310 TDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             eCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999887

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3.3e-19  Score=132.20  Aligned_cols=124  Identities=18%  Similarity=0.221  Sum_probs=87.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhcc-----
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-----   79 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   79 (203)
                      ...++|+++|.+|+|||||+++|++.... ....++.+.......+..++  ..+.+|||||..++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            46799999999999999999999987752 23333334445555666666  68999999998877655444433     


Q ss_pred             ----CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCccCC
Q 028813           80 ----GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        80 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ilv~nK~D~~~~~~~~  132 (203)
                          .+|++++|++++... +... ..|+..+......+  .|+++|+||+|+...+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence                789999999987644 3222 35666665544322  4899999999986544333

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.81  E-value=2.3e-19  Score=140.14  Aligned_cols=161  Identities=16%  Similarity=0.162  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc----cccchhh---hccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d   82 (203)
                      .|+|+|++|||||||+++|.+........+.++.......+..++ ...+.+||+||...    +..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999998643222222222333344444443 24788999999632    1112222   245789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      .+++++|++ ...+..+..+..++..+..  ...|.++++||+|+...  ...+.+.+.....+++++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 5556666666666544321  24789999999998653  223444455555678999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028813          161 AFMAMAASIKDRMA  174 (203)
Q Consensus       161 ~~~~l~~~~~~~~~  174 (203)
                      ++++|.+.+.+...
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999986544

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=6.8e-21  Score=155.35  Aligned_cols=149  Identities=21%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|.+++|||||+++|++..                               ...+..++.+.+.....+..+ 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            567899999999999999999996421                               011112233333333334333 


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~  127 (203)
                       ...+.||||||+.+|...+...+..+|++|+|+|++++.   .+   ......+..+...   +.| +++|+||+|+.+
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGT
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccc
Confidence             378999999999999888888899999999999998532   11   1112222222222   455 899999999865


Q ss_pred             CccCCH----HHHHHHH-HHhCC-----cEEEeecCCCCCHH
Q 028813          128 NKVVSY----ETAKAFA-DEIGI-----PFMETSAKDSTNVE  159 (203)
Q Consensus       128 ~~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  159 (203)
                      ......    .++..+. ...++     +++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            322111    2233333 33344     79999999999998

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.81  E-value=6.7e-19  Score=146.03  Aligned_cols=119  Identities=19%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCC--C------CC----------CccccceeeeEEEEEEeCCeEEEEEEEeC
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDS--Y------IE----------SYISTIGVDFKIRTVEQDGKTIKLQIWDT   64 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (203)
                      .+.++..+|+|+|.+++|||||+++|+...  .      ..          +.....+.......+.+.+  +.+.+|||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT   84 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT   84 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence            345678999999999999999999998311  1      00          0011222222333444454  78999999


Q ss_pred             CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      ||+.+|...+...+..+|++|+|+|+++.........|.. +..   .+.|+++|+||+|+..
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999998888889999999999999998777666555553 222   2689999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=5.9e-19  Score=146.46  Aligned_cols=163  Identities=17%  Similarity=0.235  Sum_probs=107.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEE-------EEEE---------------------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKI-------RTVE---------------------------   51 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~---------------------------   51 (203)
                      ..++|+|+|.+|+|||||+|+|++..... ...+++......       .+..                           
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            56899999999999999999999877533 333333100000       0111                           


Q ss_pred             -------------------eCCeE--EEEEEEeCCCccc---cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028813           52 -------------------QDGKT--IKLQIWDTAGQER---FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID  107 (203)
Q Consensus        52 -------------------~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  107 (203)
                                         .+...  ..+.+|||||...   .......++..+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                               11000  2589999999654   33456678899999999999998877666555544442


Q ss_pred             hhcCCCCcEEEEEeCCCCCCCccCCHH----------HHHH-----HHHH--------hCCcEEEeecC-----------
Q 028813          108 RYASDNVNKLLVGNKCDLTANKVVSYE----------TAKA-----FADE--------IGIPFMETSAK-----------  153 (203)
Q Consensus       108 ~~~~~~~p~ilv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~-----------  153 (203)
                         ..+.|+++|+||+|+........+          .+..     +...        ...+++++||+           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               236789999999998643311110          1111     1111        12479999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHH
Q 028813          154 ---DSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       154 ---~~~~i~~~~~~l~~~~~~~  172 (203)
                         ++.|+++++.+|.+.+...
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHHh
Confidence               9999999999998877544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.80  E-value=2e-18  Score=139.00  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------------CccccceeeeEEEEEEeCCeEEEEEEEe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------------SYISTIGVDFKIRTVEQDGKTIKLQIWD   63 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (203)
                      .+..+|+|+|++++|||||+++|+......                      +...+.+.......+...+  +.+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            467899999999999999999998531100                      0011111111223344444  7899999


Q ss_pred             CCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |||+.+|......++..+|++|+|+|++++..... ..++.   .....+.|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~---~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLME---VTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHH---HHTTTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHH---HHHHcCCCEEEEEcCcCCcc
Confidence            99999998888889999999999999987643221 22222   22334789999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=8.5e-20  Score=141.19  Aligned_cols=159  Identities=14%  Similarity=0.209  Sum_probs=104.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccce-e--eeEE----------E-------------------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG-V--DFKI----------R-------------------------   48 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~-~--~~~~----------~-------------------------   48 (203)
                      ...+|+|+|.+|||||||+++|++..+.+......+ .  ....          .                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999765322211111 0  0000          0                         


Q ss_pred             --------------EEEe-CCeEEEEEEEeCCCcccc-------------ccchhhhccCCcEEEEEEECCChhhHHHHH
Q 028813           49 --------------TVEQ-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVK  100 (203)
Q Consensus        49 --------------~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  100 (203)
                                    .+.+ ......+.+|||||..++             ......++..+|++|+++|..+.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 001235889999997765             455667889999999999875433211  3


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813          101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      .|+..+......+.|+++|+||+|+.+......+....+...++.+++.++++.+.++++.+.++..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            4455555555667899999999999765554444444444456688999999998888776655433

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=5.6e-19  Score=134.25  Aligned_cols=112  Identities=14%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             EEEEEEeCCCccc-------------cccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028813           57 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNK  122 (203)
Q Consensus        57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK  122 (203)
                      ..+.+|||||...             +......++..+|++++|+|+.+.. .......+   +......+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i---~~~~~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL---AKEVDPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH---HHHHCSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH---HHHhCCCCCcEEEEEcC
Confidence            4689999999653             3445666788999999999974322 10111122   22223457899999999


Q ss_pred             CCCCCCccCCHHHHHHHHHHhCCcEEEeec---CC---CCCHHHHHHHHHHHHHH
Q 028813          123 CDLTANKVVSYETAKAFADEIGIPFMETSA---KD---STNVEQAFMAMAASIKD  171 (203)
Q Consensus       123 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~~~~~l~~~~~~  171 (203)
                      +|+........+.+.......+..++++++   .+   +.|+.++++.+.+.+..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            999765432233222111112245666654   44   78899999998887764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=9.5e-19  Score=144.64  Aligned_cols=115  Identities=14%  Similarity=0.176  Sum_probs=81.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------cccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      +...+|+|+|+.|+|||||+++|++.......                  ....+.......+....  +.+.+|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence            56789999999999999999999843211000                  11223333333444444  78999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      .++...+..++..+|++++|+|+.+...... ..++..+..   .+.|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            9998888889999999999999887544322 234443433   368999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=5.6e-18  Score=126.10  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchh-------hh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------SY   77 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~   77 (203)
                      ...++|+++|.+|+|||||+++|++.... ....++.+.......+...+  ..+.+|||||..++.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987753 22223333333344444554  7899999999876543222       11


Q ss_pred             --ccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCCccCCH
Q 028813           78 --YRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        78 --~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ilv~nK~D~~~~~~~~~  133 (203)
                        ...+|+++||+|++... +... ..|+..+......+  .|+++|+||+|+...+....
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence              24689999999986532 3222 35666665443322  69999999999876544333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.77  E-value=4.7e-19  Score=138.11  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEE--EE-------------------eCC-eEEEEEEEeCCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT--VE-------------------QDG-KTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g   66 (203)
                      ++|+++|.+|+|||||+|+|++........+.++.+.....  +.                   +++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987633233332222222221  11                   122 246899999999


Q ss_pred             ccc----cccch---hhhccCCcEEEEEEECCCh
Q 028813           67 QER----FRTIT---SSYYRGAHGIIIVYDVTDQ   93 (203)
Q Consensus        67 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~   93 (203)
                      ...    ...+.   ...++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            743    12222   2356899999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=1.3e-17  Score=138.35  Aligned_cols=117  Identities=17%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------C-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----------S-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ++..+|+|+|.+|+|||||+++|+..  ....           .     ..+..+.......+.+.+  ..+.+|||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            57889999999999999999999842  1110           0     011122222233444554  78999999999


Q ss_pred             cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      .++...+...+..+|++|+|+|++++.+......|.. +..   .+.|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence            9998888889999999999999998766655554443 322   26899999999998643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=3.9e-19  Score=134.07  Aligned_cols=163  Identities=22%  Similarity=0.321  Sum_probs=86.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------ccceeeeEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD-SYIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   69 (203)
                      +..++|+|+|++|+|||||++.|.+. ..+....        ++.........+...+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 3333221        11111111112222344578999999997       44


Q ss_pred             cccchh-------hhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           70 FRTITS-------SYYR-------------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        70 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      +.....       .++.             .+++++|+.+.+.. ++..+.  ...+.... ...++++|+||.|+...+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence            444433       2222             23445666554321 122211  12233333 357899999999986543


Q ss_pred             cC--CHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          130 VV--SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      +.  ..+.+.+++..++++++++||+++ |++++|.++.+.+.+..
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            32  235677788889999999999999 99999999999887543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=3.7e-17  Score=135.82  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------ccccceeeeEEEEEEeC-----CeEEEEEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--YIES----------------YISTIGVDFKIRTVEQD-----GKTIKLQI   61 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i   61 (203)
                      .++..+|+|+|..++|||||+++|+...  +...                .....++......+.+.     +..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4578899999999999999999997421  1100                01112222222233332     23478999


Q ss_pred             EeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |||||+.+|...+...+..+|++|+|+|+++.........|.. +.   ..+.|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence            9999999998888889999999999999998765444443432 22   23689999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.8e-18  Score=130.59  Aligned_cols=133  Identities=18%  Similarity=0.202  Sum_probs=106.8

Q ss_pred             HHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChh-hHHHHH
Q 028813           23 CLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVK  100 (203)
Q Consensus        23 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  100 (203)
                      +|+.++..+.+. ..+.+|.+..+ ...+..++   .+.+||+  ++++..++..++.++|++|+|+|++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            678888888877 77788888443 33332222   6889999  8889999999999999999999999987 688888


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCCCCCHHHHHHHHH
Q 028813          101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus       101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      .|+..+..   .+.|+++|+||+|+.+.+.+  ++.++++..++  ++++++||++|.|++++|.++.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99987754   36899999999999654332  44667777777  8999999999999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=4.3e-18  Score=133.09  Aligned_cols=159  Identities=16%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------   71 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------   71 (203)
                      +-.++|+|+|++|+|||||++.|.+...+...        .++.........+...+....+++||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45688999999999999999999987653111        1111111111111223333578999999975431      


Q ss_pred             -c------------------chhhhccCCc--EEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           72 -T------------------ITSSYYRGAH--GIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        72 -~------------------~~~~~~~~~d--~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                       .                  +...++.+++  +++|+++.+. .++... ..|+..+.    .+.|+++|+||+|+...+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence             1                  1122344444  4444444331 122222 24555553    268999999999987655


Q ss_pred             cCCH--HHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          130 VVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      .+..  ..+.+++..++++++++|+.++.++.++|..|...+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            4433  556777788899999999999999998887776543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.72  E-value=1.3e-16  Score=128.97  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=84.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC----------------------CCCCccccceeeeEEEEEEeCCeEEEEEEEeC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDS----------------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDT   64 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (203)
                      +.=+|+|+|+.++|||||..+|+...                      .+.+.....++......+.+++  +.+.|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            55689999999999999999996211                      0112233334444455566666  78999999


Q ss_pred             CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      ||+..|.......++-+|++|+|+|+.++-..+....|.....    .+.|.++++||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence            9999999999999999999999999998766555555544332    27899999999998543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.72  E-value=1.7e-16  Score=121.59  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccccc--
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQERFR--   71 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~--   71 (203)
                      ++|+++|.+|+|||||+|+|++........+..+.+.....+.+++..               ..+.+||+||..+..  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            689999999999999999999876433333333333333334444421               478999999976542  


Q ss_pred             --c---chhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHH-------------------------------
Q 028813           72 --T---ITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNE-------------------------------  105 (203)
Q Consensus        72 --~---~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-------------------------------  105 (203)
                        .   .....++.+|++++|+|+++.          +.+..+..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              1   223347899999999999752          122222111111                               


Q ss_pred             ---------HH-------------------hh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813          106 ---------ID-------------------RY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus       106 ---------i~-------------------~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                               +.                   .+ ....+|+++++|+.|..-......+.+++++...+++++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                     11                   01 12258999999999964211233566777888889999999965

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=3.8e-17  Score=126.75  Aligned_cols=126  Identities=21%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             EEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCC
Q 028813           46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNV  114 (203)
Q Consensus        46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~  114 (203)
                      ....+.+++  +.+.+||++|+++++..|..++++++++|||+|+++          ..++..+..|+..+... ...+.
T Consensus       208 ~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~  285 (402)
T 1azs_C          208 FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI  285 (402)
T ss_dssp             EEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred             EEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence            344556665  899999999999999999999999999999999998          88999999999888654 34578


Q ss_pred             cEEEEEeCCCCCCCcc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEee
Q 028813          115 NKLLVGNKCDLTANKV---V---------------------------SYETAKAFA-----DE--------IGIPFMETS  151 (203)
Q Consensus       115 p~ilv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S  151 (203)
                      |++||+||.|+...+.   .                           ..+....++     ..        ..+.++++|
T Consensus       286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS  365 (402)
T 1azs_C          286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC  365 (402)
T ss_dssp             CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred             eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence            9999999999843221   1                           134444442     22        246788999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 028813          152 AKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       152 a~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      |+++.||+++|.++.+.+.+..
T Consensus       366 A~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          366 AVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999998886553

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=6.8e-18  Score=121.94  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceee--------------eEEEEEEe----------------CCeE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVD--------------FKIRTVEQ----------------DGKT   56 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   56 (203)
                      ...+|+++|.+|||||||+++|...............+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45789999999999999999998642111100000000              01111111                0123


Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      .++.+|||+|.....   ..+....+.+++|+|+......  ...+....      +.|.++|+||+|+.+......+..
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHHH
Confidence            578899999841111   1111356889999998765321  11111111      468899999999854322345556


Q ss_pred             HHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          137 KAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       137 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      .......  +++++++|+++|.|+++++++|.+.+..+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            5555554  478999999999999999999998876553

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=2.8e-18  Score=132.30  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccc----------------------eee--------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY------ISTI----------------------GVD--------------   44 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~----------------------~~~--------------   44 (203)
                      ..++|+|+|.+|||||||+++|++..+.+..      .++.                      +.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999987763211      1110                      000              


Q ss_pred             -------eEEEEEEeC-CeEEEEEEEeCCCccc-------------cccchhhhccCCc-EEEEEEECCChhhHHHHHHH
Q 028813           45 -------FKIRTVEQD-GKTIKLQIWDTAGQER-------------FRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQW  102 (203)
Q Consensus        45 -------~~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  102 (203)
                             .....+.+. .....+.+|||||...             +......++...+ ++++|+|++....-..   +
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence                   000001100 0125789999999532             3344555665555 5555667664322112   2


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH--HHHhC-CcEEEeecCCCCCHHHHHHHHHH
Q 028813          103 LNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF--ADEIG-IPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus       103 ~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ...+......+.|+++|+||+|+.+......+..+..  ....+ .+++.+||+++.|++++++++.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2233444455789999999999975433222221110  00123 35788999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.69  E-value=1e-17  Score=129.18  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.||||||...   .....+..+|++++|+|....+....+..        .....|.++|+||+|+....... ...
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence            6789999999533   23344588999999999876554322211        01136889999999985432211 111


Q ss_pred             HHHHHH---h-------CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          137 KAFADE---I-------GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       137 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      .++...   .       +.+++++||++|.|+++++++|.+.+...
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            222221   1       47899999999999999999999887653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.1e-15  Score=115.25  Aligned_cols=154  Identities=15%  Similarity=0.109  Sum_probs=104.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhcc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYR   79 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~   79 (203)
                      ...+|+++|.||||||||+|+|++........+.++.+.....+.+.+  .++.++|+||...-.       ......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999999776666667778888888888888  678899999953211       11233467


Q ss_pred             CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC--------CccCCHHHHHHHHHHhCCcEEEe
Q 028813           80 GAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA--------NKVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                      .+|++++|+|++++... +.+...+..+.. .-...|.++++||.|...        ......++++.+...+.+..-++
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            89999999999987532 222222222211 113467888999999632        12355667777777766644444


Q ss_pred             ecCCCCCHHHHHH
Q 028813          151 SAKDSTNVEQAFM  163 (203)
Q Consensus       151 Sa~~~~~i~~~~~  163 (203)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            4445556666554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=1.5e-16  Score=115.27  Aligned_cols=155  Identities=21%  Similarity=0.250  Sum_probs=92.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeE------------EEEEEeC-Ce------------------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK------------IRTVEQD-GK------------------   55 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   55 (203)
                      +.++|+|+|.+|||||||+++|+...+.....++...++.            ...+..+ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999876443333333222211            1111111 10                  


Q ss_pred             -EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813           56 -TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        56 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~  134 (203)
                       ...+.++|++|.-..   ...+-...+..+.++|+.......  ......+      +.|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence             114566676663111   011112344566777753221110  0011111      4688999999998654334556


Q ss_pred             HHHHHHHHh--CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          135 TAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       135 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      ....++..+  +++++++||++|.|++++|++|.+.+..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            666666654  57899999999999999999999887653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=5.7e-16  Score=131.02  Aligned_cols=117  Identities=17%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--C--------------CCccccceeeeE--EEEEE------------eCCe
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--I--------------ESYISTIGVDFK--IRTVE------------QDGK   55 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~--------------~~~~~~~~~~~~--~~~~~------------~~~~   55 (203)
                      ++..+|+|+|++++|||||+++|+....  .              .+.....++...  ...+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            5678999999999999999999986311  0              001111111111  22222            1334


Q ss_pred             EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      .+.+.+|||||+.+|...+..+++.+|++|+|+|+.++.+.+....|.....    .+.|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            6899999999999999999999999999999999999877776655554332    368999999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.63  E-value=1.7e-15  Score=116.71  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   69 (203)
                      ++|+++|.+|+|||||+++|++........+..+.........+++                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6799999999999999999997543222222222222222222221                   235799999999765


Q ss_pred             cc-------cchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 028813           70 FR-------TITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNE---------------------------  105 (203)
Q Consensus        70 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~---------------------------  105 (203)
                      ..       ......++.+|++++|+|+.+.          +....+..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42       1123357899999999999751          111111100000                           


Q ss_pred             ------------HHh-------------------h-cCCCCcEEEEEeCCCC--CCC-ccCCHHHHHHHHHHhCCcEEEe
Q 028813          106 ------------IDR-------------------Y-ASDNVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       106 ------------i~~-------------------~-~~~~~p~ilv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                                  +..                   + ....+|+++++||.|.  .+. .....+.++.++...+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   0 0124799999999984  222 1234566788888889999999


Q ss_pred             ecCCCCCHHHH
Q 028813          151 SAKDSTNVEQA  161 (203)
Q Consensus       151 Sa~~~~~i~~~  161 (203)
                      ||+...++.++
T Consensus       242 SAk~E~el~eL  252 (368)
T 2dby_A          242 SARLEAELAEL  252 (368)
T ss_dssp             CHHHHHHHHTS
T ss_pred             echhHHHHHHh
Confidence            98875544443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=3.1e-16  Score=127.00  Aligned_cols=122  Identities=16%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCccccceeeeEEEE----------------------E---------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRT----------------------V---------   50 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~---------   50 (203)
                      .+..++|+|+|.+|+|||||+|+|++..+.   ....+++........                      +         
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            356789999999999999999999998763   233332211000000                      0         


Q ss_pred             -----EeCCe-EEEEEEEeCCCccc-----------cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q 028813           51 -----EQDGK-TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN  113 (203)
Q Consensus        51 -----~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  113 (203)
                           .+.+. ...+.||||||...           +......++..+|++++|+|+++.........++..+.   ..+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcC
Confidence                 00000 02588999999764           34556667889999999999987544444455555443   335


Q ss_pred             CcEEEEEeCCCCCCCc
Q 028813          114 VNKLLVGNKCDLTANK  129 (203)
Q Consensus       114 ~p~ilv~nK~D~~~~~  129 (203)
                      .|+++|+||+|+....
T Consensus       219 ~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQ  234 (550)
T ss_dssp             GGEEEEEECGGGSCHH
T ss_pred             CCEEEEEECCCccCHH
Confidence            8999999999986543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.62  E-value=2e-16  Score=121.62  Aligned_cols=103  Identities=10%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.++||+|....   .......+|++++|+|+..+.....+..   .+   .  ..|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l--~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I--EMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H--hcCCEEEEeeecCCCchhH-HHHH
Confidence            57899999995421   2345678999999999987543222211   11   1  3578999999998532111 0112


Q ss_pred             HHHHH----------HhCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          137 KAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       137 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ..+..          .+..+++.+|+++|.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22221          124578999999999999999999987654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.60  E-value=3.7e-16  Score=128.67  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCC----------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD--SYI----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .-||+|+|+.++|||||..+|+..  ...                .+.....++......+.+++  +.+.++||||+.+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence            347999999999999999999731  110                01111223333333344444  7899999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |.......++-+|++|+|+|+...-..+....|......    +.|.++++||+|...
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~  133 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG  133 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence            999899999999999999999876554444444443332    688899999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.59  E-value=8.6e-16  Score=117.82  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCH--H
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--E  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~--~  134 (203)
                      +++.||||||......   .....+|++++|+|+...+....+...   .     .+.|.++|+||+|+.+......  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            6799999999654332   246889999999998765432111110   0     1357899999999864321110  1


Q ss_pred             HHHHHHHHh-------CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          135 TAKAFADEI-------GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      .+.......       ..+++++||++|.|+++++++|.+.+...
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~  262 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  262 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            222222222       35789999999999999999999877533

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=3.3e-14  Score=118.53  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=82.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--------C----------CCCccccceeeeEEEEEEeCC-----eEEEEEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--------Y----------IESYISTIGVDFKIRTVEQDG-----KTIKLQIW   62 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   62 (203)
                      ++.=+|+|+|+.++|||||..+|+...        .          ..+.....++......+.+.+     .++.+.++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            566789999999999999999987311        0          112222233333334444432     35899999


Q ss_pred             eCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      ||||+..|.......++-+|++|+|+|+...-..+...-|.+....    +.|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence            9999999999899999999999999999987655555555554433    68999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.57  E-value=3.6e-15  Score=123.61  Aligned_cols=159  Identities=16%  Similarity=0.155  Sum_probs=96.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeee---------------------------------------
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDF---------------------------------------   45 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~---------------------------------------   45 (203)
                      ....+|+|+|.+++|||||+|+|++..+ +......+....                                       
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3567999999999999999999999765 322211111000                                       


Q ss_pred             -----------EEEEEEeCCeEEEEEEEeCCCcccc-------------ccchhhhc-cCCcEEEEEEECCChhhHHHHH
Q 028813           46 -----------KIRTVEQDGKTIKLQIWDTAGQERF-------------RTITSSYY-RGAHGIIIVYDVTDQESFNNVK  100 (203)
Q Consensus        46 -----------~~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  100 (203)
                                 ....+...+ ...+.|+||||....             ......++ ..+|++++|+|++.+.......
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                       001111111 125789999995431             12223333 5789999999998653322222


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH-H-HHHhC-CcEEEeecCCCCCHHHHHHHHHHH
Q 028813          101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA-F-ADEIG-IPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       101 ~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      .++   ......+.|+++|+||+|+.+........... . ....+ .+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll---~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIA---KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHH---HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHH---HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            223   33344578999999999997654433221110 0 00112 357889999999999999998763

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.55  E-value=3.5e-14  Score=104.99  Aligned_cols=112  Identities=14%  Similarity=-0.010  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCccccccchh------hhccCCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLN-EIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      +++.+|||||..+......      ..+.. +++|+++|+.............. ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999876533211      23455 88999998754322222211111 1111112257999999999986533


Q ss_pred             cCCHHHHHH----------------------------HHHHhC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          130 VVSYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       130 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ..  +.+.+                            +...++  ++++++||+++.|+++++++|.+.+..
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            11  11111                            123333  489999999999999999999887753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.52  E-value=5.2e-14  Score=107.62  Aligned_cols=103  Identities=9%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      .++.|+||+|...-.   ......+|.+++++|+...+..+.+....   .     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence            688999999965321   23457899999999986543321111111   1     235577789999754332222223


Q ss_pred             HHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          137 KAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       137 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      +.+...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333221          1357899999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=1.7e-13  Score=103.32  Aligned_cols=96  Identities=19%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             ccccccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-HHHHHHHHHHhC
Q 028813           67 QERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEIG  144 (203)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~  144 (203)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .+...+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5567777788999999999999999886 78888889887754   368999999999996543212 344555666778


Q ss_pred             CcEEEeecCCCCCHHHHHHHH
Q 028813          145 IPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus       145 ~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      ++++++||++|.|++++++.+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHhhc
Confidence            999999999999999999884

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=2.3e-12  Score=99.91  Aligned_cols=86  Identities=20%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCccc-
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQER-   69 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~-   69 (203)
                      ...+++++|++|||||||+|+|++... .....++.+.+.....+.+.+..               ..+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999998765 44555555555556666665421               3688999999543 


Q ss_pred             ------cccchhhhccCCcEEEEEEECCC
Q 028813           70 ------FRTITSSYYRGAHGIIIVYDVTD   92 (203)
Q Consensus        70 ------~~~~~~~~~~~~d~~i~v~d~~~   92 (203)
                            +...+...++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234445688999999999863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=96.58  Aligned_cols=106  Identities=9%  Similarity=-0.007  Sum_probs=69.7

Q ss_pred             CCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHH----HHhhc-CCCCcEEEEEeCC-CCCCCccCCHHHHHH
Q 028813           65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE----IDRYA-SDNVNKLLVGNKC-DLTANKVVSYETAKA  138 (203)
Q Consensus        65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~~  138 (203)
                      +|+..++..|+.|+.+.|++|||+|.+|.+..+ ....+..    +.... ..+.|++|++||. |+.  ..+...++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence            377888999999999999999999999875433 3333322    22221 2578999999995 663  3345454443


Q ss_pred             HHH----HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          139 FAD----EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       139 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      ...    ...+.+..|||++|+|+.+.++||.+.+..++
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            322    13467999999999999999999987775443

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=104.21  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=52.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR   71 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   71 (203)
                      ..++|+++|.+|+|||||+++|++........++.+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4578999999999999999999987665445555555555555555442               2358999999976543


Q ss_pred             c-------chhhhccCCcEEEEEEECCCh
Q 028813           72 T-------ITSSYYRGAHGIIIVYDVTDQ   93 (203)
Q Consensus        72 ~-------~~~~~~~~~d~~i~v~d~~~~   93 (203)
                      .       .+..+++.+|++++|+|+.+.
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            2       455678899999999998754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.28  E-value=4.6e-12  Score=93.20  Aligned_cols=108  Identities=8%  Similarity=-0.010  Sum_probs=74.0

Q ss_pred             CCCccccccchhhhccCCcEEEEEEECCChhhHH---HHHHHHHHHHhh-cCCCCcEEEEEeC-CCCCCCccCCHHHHHH
Q 028813           64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN---NVKQWLNEIDRY-ASDNVNKLLVGNK-CDLTANKVVSYETAKA  138 (203)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ilv~nK-~D~~~~~~~~~~~~~~  138 (203)
                      .+|+...+..|+.|+.+.|++|||+|.+|.+.++   ++.+....+... ...+.|++|++|| -|+..  .+...++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            3567888999999999999999999999886543   222222233222 2347899999997 57743  344444433


Q ss_pred             HHH----HhCCcEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028813          139 FAD----EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       139 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      ...    ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            322    12467999999999999999999998876443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.17  E-value=4.2e-11  Score=92.59  Aligned_cols=97  Identities=24%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH----HHH
Q 028813           66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FAD  141 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~  141 (203)
                      ..++|...+..+++.+|++++|+|+.++.     ..|...+..... ++|+++|+||+|+.+.. ...+...+    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45678888888899999999999999864     345555655443 68999999999996543 23333333    355


Q ss_pred             HhCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 028813          142 EIGI---PFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       142 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ..++   +++.+||++|.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999987653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.11  E-value=5.4e-12  Score=97.61  Aligned_cols=140  Identities=13%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC------CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------h
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------T   74 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~   74 (203)
                      .+++++|.+|+|||||+|+|++.      .......+.++  .....+..+.   .+.++||||.......        .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999975      22223333333  2333344443   3789999995432211        1


Q ss_pred             hhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813           75 SSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        75 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ..++  ...+.++++++......+..+.    .+......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            1122  6678999999974321110110    022223346899999999998654433 23344556667777666666


Q ss_pred             CCCCCH
Q 028813          153 KDSTNV  158 (203)
Q Consensus       153 ~~~~~i  158 (203)
                      ....++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            554444

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.11  E-value=4.8e-11  Score=89.00  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=84.2

Q ss_pred             EeCCCcc-ccccchhhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH
Q 028813           62 WDTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA  138 (203)
Q Consensus        62 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~  138 (203)
                      -..||+- .........+..+|++++|+|+.++.+..  .+.+++        .++|.++|+||+|+.+...  .+....
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~   73 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKE   73 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHH
Confidence            3567764 33444566789999999999999887643  333332        3689999999999965321  122334


Q ss_pred             HHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccCCCCCCCC
Q 028813          139 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS-QPSMNNARPPTVQIKGQPVAQKS  198 (203)
Q Consensus       139 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      +....+++++.+||.++.|++++++.+.+.+...... ........+..+.+.+.|+.+||
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKS  134 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  134 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchH
Confidence            4445578999999999999999999988887654221 11112345567777888888876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.09  E-value=2.5e-10  Score=89.20  Aligned_cols=141  Identities=17%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--cceeeeEEEEEEe--CCeEEEEEEEeCCCccccc-----------
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQ--DGKTIKLQIWDTAGQERFR-----------   71 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~-----------   71 (203)
                      ..++++|+|++|+|||||++.|.+..+......  ..+.......+..  .+....++++|++|.....           
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            346799999999999999999998654221111  1111111222222  2223478899998753210           


Q ss_pred             ---cchhh----h---------ccC--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC
Q 028813           72 ---TITSS----Y---------YRG--AHG-IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS  132 (203)
Q Consensus        72 ---~~~~~----~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~  132 (203)
                         ..+..    +         ...  +|+ ++|+.|...+-+...    +..++.+. .+.|+|+|+||+|.....+..
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~  195 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELT  195 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHH
Confidence               01111    1         112  233 555666554332222    22233333 578999999999986543321


Q ss_pred             --HHHHHHHHHHhCCcEEEeec
Q 028813          133 --YETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~Sa  152 (203)
                        ...+.......+++++.+|.
T Consensus       196 ~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          196 KFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHcCCcEEecCC
Confidence              11122222335677777774

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.06  E-value=1.9e-10  Score=91.95  Aligned_cols=151  Identities=15%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh------cCCCC---CC-cccc-----------ceeeeEEEEEE-------------e
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFA------DDSYI---ES-YIST-----------IGVDFKIRTVE-------------Q   52 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~------~~~~~---~~-~~~~-----------~~~~~~~~~~~-------------~   52 (203)
                      ....|+|+|.+||||||++++|.      +....   .. +.+.           .+..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      33210   00 0000           00111110000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc-chhh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCC
Q 028813           53 DGKTIKLQIWDTAGQERFRT-ITSS---Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDL  125 (203)
Q Consensus        53 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~D~  125 (203)
                      ....+++.|+||||...... .+..   +  +..+|.+++|+|+........   ....+..    ..|+ .+|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence            00236889999999754221 1111   1  226899999999987543211   1222222    1464 888999998


Q ss_pred             CCCccCCHHHHHHHHHHhCCcE------------------EEeecCCCCC-HHHHHHHHHHH
Q 028813          126 TANKVVSYETAKAFADEIGIPF------------------METSAKDSTN-VEQAFMAMAAS  168 (203)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  168 (203)
                      .....    .........++|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53321    1222333455544                  3468889988 99998888765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.05  E-value=1.2e-10  Score=90.10  Aligned_cols=113  Identities=22%  Similarity=0.322  Sum_probs=79.3

Q ss_pred             CccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH----HH
Q 028813           66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----AD  141 (203)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~  141 (203)
                      .+++|.+....++..++++++|+|+.++.+     .|...+..... +.|+++|+||+|+.+.. ...+...++    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467788888888899999999999998764     34444444333 68999999999997543 223333333    45


Q ss_pred             HhCC---cEEEeecCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCCCCCCC
Q 028813          142 EIGI---PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS  198 (203)
Q Consensus       142 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (203)
                      ..++   .++.+||++|.|++++++.|.+...             ...+.+.+.++.+||
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~-------------~~~i~~vG~~nvGKS  176 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE-------------GGDVYVVGCTNVGKS  176 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT-------------TSCEEEECCTTSSHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc-------------cCcEEEEcCCCCchH
Confidence            5566   6899999999999999999876542             123555566666654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.02  E-value=6e-10  Score=82.53  Aligned_cols=136  Identities=19%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cccceeeeEEEEEEeCCe--EEEEEEEeCCCcccccc-----
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRT-----   72 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~-----   72 (203)
                      .++++|+|++|+|||||++.|.+...+...        .+. ........+.....  ...++++|++|......     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            589999999999999999999874432211        000 00011111222221  23678999998432100     


Q ss_pred             -ch----------------------hhhccCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           73 -IT----------------------SSYYRGAHGIIIVYDVT-DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        73 -~~----------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                       ..                      +..+..+++.++++|.. .+-.... .+.+..+   ... .++++|++|+|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCH
Confidence             00                      00122357888889854 2222111 2222233   333 799999999998654


Q ss_pred             ccC--CHHHHHHHHHHhCCcEEE
Q 028813          129 KVV--SYETAKAFADEIGIPFME  149 (203)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~  149 (203)
                      .+.  ....+......+++.+++
T Consensus       156 ~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          156 EEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHcCccccC
Confidence            332  112334444566777664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=1.4e-11  Score=95.17  Aligned_cols=134  Identities=10%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc--------
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------   73 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------   73 (203)
                      .+++++|.+|+|||||+|+|++....       ....+.+  +.....+....   .+.++||||.......        
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT--TLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCe--ecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999975311       1222222  22333344443   2789999996433211        


Q ss_pred             hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813           74 TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        74 ~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      ...+  ....+.++++++.........+    ..+......+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence            1111  3567888999987422110010    0022223346899999999998654432 2334455556666555554


Q ss_pred             c
Q 028813          152 A  152 (203)
Q Consensus       152 a  152 (203)
                      +
T Consensus       311 ~  311 (368)
T 3h2y_A          311 P  311 (368)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.93  E-value=1.2e-08  Score=79.73  Aligned_cols=157  Identities=15%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc-ceeeeE--EEEEEeCCeEEEEEEEeCCCccccccchhhh-----cc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYIST-IGVDFK--IRTVEQDGKTIKLQIWDTAGQERFRTITSSY-----YR   79 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   79 (203)
                      ...++|+|++|||||||+|.+.+...+...... .+.+..  ...+... ....+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            357999999999999999999985432221111 011100  0111111 11257899999854221111111     23


Q ss_pred             CCcEEEEEEECC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CCccCCHH----HHHHHH----HH
Q 028813           80 GAHGIIIVYDVT--DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT-------ANKVVSYE----TAKAFA----DE  142 (203)
Q Consensus        80 ~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~-------~~~~~~~~----~~~~~~----~~  142 (203)
                      ..+..++ ++..  .....    .....+..   .+.|+++|.||.|+.       .-+.....    .++++.    .+
T Consensus       148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3455554 7765  32221    11222222   267999999999963       11112222    233332    12


Q ss_pred             hC---CcEEEeec--CCCCCHHHHHHHHHHHHHHHh
Q 028813          143 IG---IPFMETSA--KDSTNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       143 ~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~~  173 (203)
                      .+   ..++.+|+  ..+.|++++.+.|.+.+.+..
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            22   35788999  555679999999988775543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.64  E-value=2.8e-08  Score=74.06  Aligned_cols=58  Identities=28%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE   68 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   68 (203)
                      ...++++++|.||+|||||+|+|.+... .....+.++..  ...+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence            3568999999999999999999998663 22223332222  22233333   57899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.63  E-value=3.5e-09  Score=78.09  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             CCccc-cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh
Q 028813           65 AGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI  143 (203)
Q Consensus        65 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~  143 (203)
                      ||+-. ........+.++|++++|+|+.++.+....     .+. ..  ++|.++|+||+|+.+...  .+....+....
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~   74 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKKQ   74 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence            55432 223455667899999999999988654211     011 12  689999999999965321  12333444556


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          144 GIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       144 ~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      +.++ .+|+.++.|++++++.+.+.
T Consensus        75 g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           75 GKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             CCeE-EEECCCCcCHHHHHHHHHHh
Confidence            7888 99999999999998876543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.61  E-value=6.7e-08  Score=75.93  Aligned_cols=90  Identities=20%  Similarity=0.150  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCccccccch----h--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTIT----S--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +++.|+||+|........    .  ......|.+++|+|+........   ....+...   -.+..+|+||+|..... 
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~g-  255 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAKG-  255 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSSH-
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcccc-
Confidence            678999999954322111    1  11235789999999886543222   12222221   23567889999975432 


Q ss_pred             CCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          131 VSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                         ..........++|+..++.  |+++
T Consensus       256 ---G~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          256 ---GGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             ---HHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             ---cHHHHHHHHHCCCEEEEEc--CCCh
Confidence               3344555567888887775  5443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.55  E-value=7.3e-08  Score=75.87  Aligned_cols=83  Identities=20%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCccccccch----hh--hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028813           57 IKLQIWDTAGQERFRTIT----SS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-N-KLLVGNKCDLTAN  128 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ilv~nK~D~~~~  128 (203)
                      +++.|+||||........    ..  .+..+|.+++|+|+.....   .......+   .. .. | ..+|+||+|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence            678999999965421111    11  1236899999999876532   11112222   22 24 5 7889999997432


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEe
Q 028813          129 KVVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~  150 (203)
                      .    .....+....+.++..+
T Consensus       254 ~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 G----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----HHHHHHHHHSSCCEEEE
T ss_pred             h----HHHHHHHHHHCCCEEEe
Confidence            1    22334556667776555

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.54  E-value=2.9e-08  Score=73.20  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ++++++|.+|+|||||+|+|.+..... ...+..+  .....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGIT--KGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCc--cceEEEEeCC---CEEEEECCCccc
Confidence            689999999999999999999866422 2222222  2222232332   678999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.44  E-value=1.2e-07  Score=71.33  Aligned_cols=90  Identities=12%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             cchhhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHHHHHhCCcEE
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFM  148 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  148 (203)
                      .+.+..+.++|.+++|+|+.+|.. ...+..++....   ..++|.++|+||+|+.+....  ..+...++....+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            344556889999999999997653 334444443332   236889999999999765320  12334444455688999


Q ss_pred             EeecCCCCCHHHHHHH
Q 028813          149 ETSAKDSTNVEQAFMA  164 (203)
Q Consensus       149 ~~Sa~~~~~i~~~~~~  164 (203)
                      .+|+.++.|+++++..
T Consensus       155 ~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          155 LTSSKDQDSLADIIPH  170 (307)
T ss_dssp             ECCHHHHTTCTTTGGG
T ss_pred             EEecCCCCCHHHHHhh
Confidence            9999999888776554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.42  E-value=1.8e-07  Score=76.06  Aligned_cols=64  Identities=22%  Similarity=0.139  Sum_probs=39.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccc-eeeeEEEEE--Ee-CCeEEEEEEEeCCCccc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTI-GVDFKIRTV--EQ-DGKTIKLQIWDTAGQER   69 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   69 (203)
                      ...++|+|+|.||+|||||+|+|++....-....++ +.+.....+  .. ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            457899999999999999999999876421111111 111111111  11 11235788999999654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.41  E-value=8.7e-08  Score=75.21  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCccc--cccc----hhhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           57 IKLQIWDTAGQER--FRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        57 ~~~~i~D~~g~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      +++.++||||...  ....    ...+  .-..+.+++|+|+.........   ...+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence            6788999999644  1111    1111  1245899999998865432222   2223222   235678999999753 


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813          129 KVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                         ............+.|+..++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               233455556667999887775  6554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.29  E-value=1.6e-06  Score=71.25  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI   34 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~   34 (203)
                      ..++|+|+.|||||||++.+.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            35999999999999999999986433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.24  E-value=2.6e-06  Score=63.87  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCccc--ccc-chh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028813           57 IKLQIWDTAGQER--FRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~  127 (203)
                      +++.++||||...  ... ...     .....+|.+++|+|+.....   .......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5789999999766  211 111     12346899999999865322   1122222222    245 678899999743


Q ss_pred             CccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      .    ......+....++|+..++  .|+++++
T Consensus       254 ~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2    3345566777888988776  4666543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.21  E-value=4.9e-06  Score=63.74  Aligned_cols=84  Identities=21%  Similarity=0.246  Sum_probs=55.9

Q ss_pred             hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC-CHHHHHHHHHHhCCcEEEeecCC
Q 028813           77 YYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKD  154 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
                      ...++|.+++|.+.. |. +...+..++......   ++|.+||+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            467899999887654 43 344455555443332   5788999999999754320 01122333345678999999999


Q ss_pred             CCCHHHHHHH
Q 028813          155 STNVEQAFMA  164 (203)
Q Consensus       155 ~~~i~~~~~~  164 (203)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999988765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.07  E-value=1.2e-05  Score=61.02  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             EEEEEeCCCccccccchhhh------ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC
Q 028813           58 KLQIWDTAGQERFRTITSSY------YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV  131 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~  131 (203)
                      .+.++|++|..+........      .-..|-.++++|+....   .+......+....  + ...+++||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCccc---
Confidence            45678999964432211111      12367889999976543   2222333332221  2 23678899996322   


Q ss_pred             CHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          132 SYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                       .-.........+.|+..++  +|+++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             2334566677889988876  5666543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.88  E-value=1.3e-05  Score=63.19  Aligned_cols=26  Identities=19%  Similarity=0.116  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+..-|.|+|++++|||||+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            35667999999999999999999853

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.79  E-value=1e-06  Score=70.24  Aligned_cols=109  Identities=11%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcc--ccccch--------hh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--RFRTIT--------SS   76 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~--------~~   76 (203)
                      ..+.|+++|.+||||||+.++|...... ...++.............+......+||..|..  +....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998753210 001111000000000001111233578888863  223322        44


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG  120 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~  120 (203)
                      ++...++.++|+|.++. +.+....|+..+...   +.+++++-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            55567788999999887 445556666666544   33444443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.57  E-value=3.7e-05  Score=53.17  Aligned_cols=23  Identities=30%  Similarity=0.768  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.53  E-value=3.6e-05  Score=54.16  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.49  E-value=6.8e-05  Score=51.41  Aligned_cols=30  Identities=30%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |..+......|+++|++||||||+.+.|.+
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            555444456799999999999999998864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.47  E-value=0.00068  Score=53.40  Aligned_cols=83  Identities=16%  Similarity=0.084  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCccccccchh------hhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~  129 (203)
                      +++.|+||||.........      ..+...+.+++|+|+......   ......+..    ..+ .-+|+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            6789999999654322111      113467899999998754322   122222222    123 34688999974322


Q ss_pred             cCCHHHHHHHHHHhCCcEEEe
Q 028813          130 VVSYETAKAFADEIGIPFMET  150 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~  150 (203)
                          .....+....+.|+..+
T Consensus       257 ----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             ----THHHHHHHHHCCCEEEE
T ss_pred             ----HHHHHHHHHHCCCeEEE
Confidence                12334555556654433

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.46  E-value=6e-05  Score=52.10  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.35  E-value=4.3e-05  Score=57.36  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.35  E-value=0.00011  Score=51.02  Aligned_cols=23  Identities=39%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.++++|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.33  E-value=0.0001  Score=51.75  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.28  E-value=0.00013  Score=49.93  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.27  E-value=0.00013  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.25  E-value=0.00014  Score=51.93  Aligned_cols=23  Identities=35%  Similarity=0.653  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.24  E-value=0.00015  Score=51.88  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            358899999999999999998643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.23  E-value=0.0005  Score=51.55  Aligned_cols=22  Identities=45%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|++|||||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            47899999999999999998 44

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.23  E-value=0.00015  Score=51.22  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-..|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988763

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.23  E-value=0.00023  Score=50.26  Aligned_cols=30  Identities=17%  Similarity=0.062  Sum_probs=23.6

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |.........|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344333456799999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.23  E-value=0.00021  Score=50.03  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |.........|+|+|.+||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4555566788999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.21  E-value=0.00019  Score=50.67  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+|+|+.|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.20  E-value=0.0002  Score=50.20  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999853

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00028  Score=48.95  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.19  E-value=0.00018  Score=50.89  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      --|+|+|++||||||+++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.19  E-value=0.00019  Score=48.94  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.18  E-value=0.00022  Score=49.56  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.17  E-value=0.00023  Score=50.10  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|+|+|++||||||+++.|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.17  E-value=0.00026  Score=51.12  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37899999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.17  E-value=0.00028  Score=50.40  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.14  E-value=0.00024  Score=50.90  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.14  E-value=0.00023  Score=48.16  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.14  E-value=0.00024  Score=54.41  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.13  E-value=0.00028  Score=48.04  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 028813            9 FKLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l   28 (203)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.13  E-value=0.00035  Score=48.97  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            67999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.12  E-value=0.0003  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.11  E-value=0.00023  Score=49.97  Aligned_cols=24  Identities=38%  Similarity=0.601  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999987654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.10  E-value=0.00028  Score=50.00  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.10  E-value=0.00029  Score=47.90  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.08  E-value=0.0003  Score=48.81  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.08  E-value=0.0003  Score=49.86  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999853

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.08  E-value=0.00037  Score=47.74  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.07  E-value=0.00031  Score=51.95  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++|+|+.|||||||++.+.+-.
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999998854

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.07  E-value=0.00036  Score=50.62  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.07  E-value=0.00032  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.06  E-value=0.00032  Score=51.52  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++|+|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.06  E-value=0.0004  Score=50.32  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.06  E-value=0.00029  Score=49.45  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.|+|+|++||||||+++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.05  E-value=0.00046  Score=50.79  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37899999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.05  E-value=0.0005  Score=49.87  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..++|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.05  E-value=0.00043  Score=49.25  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999998854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.03  E-value=0.00042  Score=51.94  Aligned_cols=24  Identities=38%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++++|++|||||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            478999999999999999987554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.03  E-value=0.00054  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.02  E-value=0.00052  Score=48.74  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.01  E-value=0.00038  Score=51.12  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.00  E-value=0.00036  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.00  E-value=0.00031  Score=48.98  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.99  E-value=0.00048  Score=50.45  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.99  E-value=0.00043  Score=48.92  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.99  E-value=0.0005  Score=49.43  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.99  E-value=0.00041  Score=47.52  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.99  E-value=0.00034  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.99  E-value=0.00054  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.99  E-value=0.00047  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.99  E-value=0.00048  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.597  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.99  E-value=0.00037  Score=52.25  Aligned_cols=22  Identities=32%  Similarity=0.307  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.98  E-value=0.00052  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.98  E-value=0.00051  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.97  E-value=0.00044  Score=50.39  Aligned_cols=23  Identities=48%  Similarity=0.670  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.97  E-value=0.00043  Score=50.44  Aligned_cols=22  Identities=41%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999985

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.96  E-value=0.00055  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.96  E-value=0.00049  Score=50.49  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47999999999999999998743

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.96  E-value=0.00051  Score=47.51  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ....|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.96  E-value=0.00048  Score=47.34  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..-++|+|++|||||||+++|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346899999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.95  E-value=0.00051  Score=48.14  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.95  E-value=0.00033  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.95  E-value=0.00048  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.94  E-value=0.0005  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00045  Score=48.45  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.94  E-value=0.00034  Score=48.13  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998763

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.94  E-value=0.00073  Score=47.57  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .....|+|+|++||||||+.+.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.94  E-value=0.0005  Score=48.93  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+.|+|+|.+||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998854

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.94  E-value=0.00049  Score=48.79  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.94  E-value=0.00051  Score=48.04  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.93  E-value=0.00059  Score=47.30  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.92  E-value=0.00075  Score=46.70  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+..  ....|+|.|.+||||||+.+.|..
T Consensus         1 m~~~--~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKS--KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCC--CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCC--cCcEEEEECCCCCCHHHHHHHHHH
Confidence            4554  235799999999999999998853

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.92  E-value=0.00061  Score=48.08  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.91  E-value=0.00061  Score=50.27  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.91  E-value=0.0007  Score=50.18  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.91  E-value=0.00047  Score=48.36  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.|+|+|++||||||+.+.|.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.90  E-value=0.00053  Score=50.48  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.90  E-value=0.00066  Score=47.76  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.90  E-value=0.0007  Score=49.57  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.90  E-value=0.00053  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.89  E-value=0.00031  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 028813           10 KLLLIGDSGVGKSCLLLRFA-DD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~-~~   31 (203)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48999999999999999998 64

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.89  E-value=0.00047  Score=51.97  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..-.-|+|+|++|||||||++.|.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44567999999999999999998763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.89  E-value=0.00067  Score=49.55  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.87  E-value=0.00059  Score=46.88  Aligned_cols=23  Identities=43%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ....|++.|.+||||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34569999999999999999886

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.86  E-value=0.00066  Score=45.98  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.86  E-value=0.00077  Score=49.49  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.85  E-value=0.00053  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999873

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.84  E-value=0.0007  Score=46.66  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.84  E-value=0.00029  Score=48.30  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.84  E-value=0.00065  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ...|+|.|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999886

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.83  E-value=0.00064  Score=48.31  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998853

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.81  E-value=0.00048  Score=51.73  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999988743

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.81  E-value=0.001  Score=45.99  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+++|.+||||||+.+.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.78  E-value=0.0009  Score=45.69  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+.|+|++|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.77  E-value=0.00059  Score=52.56  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999988743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.77  E-value=0.00082  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.76  E-value=0.00069  Score=49.13  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.76  E-value=0.001  Score=49.51  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...-|++.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.76  E-value=0.00092  Score=51.25  Aligned_cols=23  Identities=43%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      ++++|+.|||||||++.+.+-..
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCchHHHHHHHHhcCCC
Confidence            78999999999999999988543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.76  E-value=0.00071  Score=46.28  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.75  E-value=0.00087  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.74  E-value=0.00069  Score=51.98  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.74  E-value=0.00066  Score=48.36  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.73  E-value=0.00055  Score=45.74  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.72  E-value=0.0011  Score=46.38  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.71  E-value=0.00077  Score=49.80  Aligned_cols=21  Identities=38%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.70  E-value=0.0011  Score=50.89  Aligned_cols=22  Identities=36%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++|+|+.|||||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            7899999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.70  E-value=0.0011  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+-|+|+|++|||||||++.|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.70  E-value=0.00088  Score=50.89  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.69  E-value=0.001  Score=46.08  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.68  E-value=0.0011  Score=50.69  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.68  E-value=0.00091  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.+.+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.67  E-value=0.0013  Score=48.98  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.67  E-value=0.0032  Score=41.57  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999988764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.67  E-value=0.0011  Score=47.13  Aligned_cols=20  Identities=20%  Similarity=0.527  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66799999999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.66  E-value=0.0011  Score=47.56  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.64  E-value=0.0013  Score=50.83  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHcCC
Confidence            7899999999999999998854

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.0013  Score=50.52  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           32 VALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHCCC
Confidence            7899999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.64  E-value=0.0013  Score=50.53  Aligned_cols=22  Identities=45%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           32 MALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            7899999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.64  E-value=0.00098  Score=48.48  Aligned_cols=21  Identities=43%  Similarity=0.707  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.62  E-value=0.00078  Score=46.28  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=16.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.62  E-value=0.001  Score=51.36  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|+|++||||||+++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999886

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.61  E-value=0.0012  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.61  E-value=0.0012  Score=44.82  Aligned_cols=21  Identities=19%  Similarity=0.456  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.61  E-value=0.0013  Score=46.19  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+|+|++||||||+++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.61  E-value=0.001  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.++++|+.||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999863

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.60  E-value=0.0014  Score=49.25  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....|+|+|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.60  E-value=0.0014  Score=50.49  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.60  E-value=0.0011  Score=48.38  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.60  E-value=0.00046  Score=48.70  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.60  E-value=0.0014  Score=50.56  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCcHHHHHHHHHHcCCC
Confidence            78999999999999999987543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.59  E-value=0.0014  Score=47.69  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998854

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.58  E-value=0.0012  Score=48.11  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.58  E-value=0.0014  Score=47.82  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.57  E-value=0.0012  Score=53.14  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++||||||+++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998744

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.56  E-value=0.0013  Score=45.25  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0012  Score=49.56  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      --++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.55  E-value=0.0014  Score=47.09  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.53  E-value=0.0011  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|++|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.52  E-value=0.0017  Score=44.54  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.52  E-value=0.0011  Score=47.56  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-.-|+|.|+.||||||+++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4467999999999999999998774

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.51  E-value=0.0014  Score=50.88  Aligned_cols=22  Identities=41%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            3789999999999999999873

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.51  E-value=0.0012  Score=50.55  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            37899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.51  E-value=0.0018  Score=43.93  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.|+|.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            44799999999999999998853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.49  E-value=0.0016  Score=44.64  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.49  E-value=0.0018  Score=46.50  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=20.2

Q ss_pred             CCCCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            2 NPEYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         2 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...-...++++|+|+|||||||+.+.|..
T Consensus         2 ~~~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            2 AHHHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -------CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcccccccceeeECCCCCCHHHHHHHHHH
Confidence            33445678999999999999999998753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.47  E-value=0.0014  Score=48.32  Aligned_cols=21  Identities=43%  Similarity=0.707  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.46  E-value=0.0014  Score=49.80  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.44  E-value=0.0074  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ....-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            356678899999999999999665

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.44  E-value=0.0018  Score=44.43  Aligned_cols=21  Identities=24%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.43  E-value=0.0019  Score=47.86  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999886

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.40  E-value=0.0026  Score=44.33  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+.|+++|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.40  E-value=0.0019  Score=45.99  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++|+|++|+|||||++.+.+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999885

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.36  E-value=0.0011  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.32  E-value=0.002  Score=46.94  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.+++.|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3599999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.32  E-value=0.0021  Score=48.57  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .--++|+|+.|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3457899999999999999999653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.32  E-value=0.0019  Score=49.53  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      --++++|+.||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.0018  Score=51.38  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|+|+.|||||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.31  E-value=0.0019  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.30  E-value=0.0023  Score=45.18  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...|+++|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0011  Score=47.24  Aligned_cols=25  Identities=16%  Similarity=-0.051  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .+-|++.|+++.|||+|++++.+..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            3445555999999999999999863

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.27  E-value=0.0038  Score=44.77  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-.-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.27  E-value=0.0021  Score=51.28  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCccccccch----hh---hc-----cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           57 IKLQIWDTAGQERFRTIT----SS---YY-----RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      +++.++||+|........    ..   ..     ...+-++|++|+......   ......+....  +.. .+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~it-gvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--GLT-GITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--CCS-EEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--CCC-EEEEEcCC
Confidence            457889999964321111    11   11     124578889997755321   12222232221  223 56789999


Q ss_pred             CCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      ....    .-.+..+...+++++.++  -+|.++++
T Consensus       450 ~tak----gG~~lsi~~~~~~PI~fi--g~Ge~vdD  479 (503)
T 2yhs_A          450 GTAK----GGVIFSVADQFGIPIRYI--GVGERIED  479 (503)
T ss_dssp             GCSC----CTHHHHHHHHHCCCEEEE--ECSSSGGG
T ss_pred             Cccc----ccHHHHHHHHHCCCEEEE--ecCCChhh
Confidence            5321    233556666778888765  33555443

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.26  E-value=0.0059  Score=42.58  Aligned_cols=85  Identities=16%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~  134 (203)
                      +++.++|+|+..  .......+..+|.+++++..+...  ..+...+..+....  ..+.++.+|+|+.|....  . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence            678999999865  233455667799999999876543  56666666665443  234677899999985321  1 23


Q ss_pred             HHHHHHHHhCCcEE
Q 028813          135 TAKAFADEIGIPFM  148 (203)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (203)
                      ...++...++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            34555555665554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.25  E-value=0.0021  Score=43.93  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++|.|++|+|||++++.+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999998865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.24  E-value=0.0024  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.23  E-value=0.0025  Score=48.74  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      +++|+|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.22  E-value=0.0026  Score=47.40  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.21  E-value=0.003  Score=45.08  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.21  E-value=0.0025  Score=45.77  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0027  Score=46.23  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.19  E-value=0.0032  Score=41.95  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999975

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.17  E-value=0.0034  Score=43.84  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.14  E-value=0.0027  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999885

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.12  E-value=0.0045  Score=50.21  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.10  E-value=0.004  Score=50.99  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            58999999999999999988754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.09  E-value=0.0037  Score=41.34  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..|++.|++|+|||++.+.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.05  E-value=0.0045  Score=50.68  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.04  E-value=0.042  Score=38.61  Aligned_cols=86  Identities=12%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             EEEEEEEeCCCc-cccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHH
Q 028813           56 TIKLQIWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        56 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~  134 (203)
                      .+++.++|+|+. ...  .....+..+|.+|+++..+ ..++..+...+..+....  +.++.+|+|+.|..... . ..
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GD  139 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HH
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HH
Confidence            367899999986 432  2445677899999999865 455666666666665533  45688999999864311 1 23


Q ss_pred             HHHHHHHHhCCcEE
Q 028813          135 TAKAFADEIGIPFM  148 (203)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (203)
                      +..+...+++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            44444455665544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.04  E-value=0.0046  Score=50.08  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      -++++|+.|||||||++.+.+-..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999987543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.04  E-value=0.0031  Score=44.33  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.03  E-value=0.0032  Score=50.18  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0049  Score=50.67  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++++|+.|+|||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            479999999999999999987543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.96  E-value=0.0033  Score=46.01  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+...|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            35578999999999999999988653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.95  E-value=0.004  Score=49.15  Aligned_cols=23  Identities=43%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      +++|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.95  E-value=0.0043  Score=45.09  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.+++.|++|+|||++++++..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.94  E-value=0.004  Score=46.25  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34789999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.93  E-value=0.0049  Score=43.07  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.93  E-value=0.0041  Score=45.86  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-.+++.|++|+|||+|++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.92  E-value=0.0045  Score=44.00  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.91  E-value=0.0062  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47999999999999999998754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.91  E-value=0.0047  Score=43.31  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998875

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.90  E-value=0.004  Score=45.97  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.90  E-value=0.0046  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999988744

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.89  E-value=0.0039  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999888743

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.89  E-value=0.0045  Score=48.55  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-|+++|.+||||||+.+.|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.88  E-value=0.0062  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-|+|+|++|||||+|...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34588999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.87  E-value=0.0061  Score=49.41  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++|+|+.|||||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999988543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.87  E-value=0.0045  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||+|++++...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999998863

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.87  E-value=0.0053  Score=44.09  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .....|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.85  E-value=0.0056  Score=42.84  Aligned_cols=24  Identities=42%  Similarity=0.645  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ..|+|+|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.83  E-value=0.0065  Score=45.86  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.83  E-value=0.006  Score=45.42  Aligned_cols=23  Identities=26%  Similarity=0.157  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-+++.|+||+|||+|.+++..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678889999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.80  E-value=0.0053  Score=47.27  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      .+|+|+.|||||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999976

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.80  E-value=0.0065  Score=41.81  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.80  E-value=0.0068  Score=49.86  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.79  E-value=0.0027  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.77  E-value=0.0078  Score=48.80  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      .++|+|+.|||||||++.+.+-..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.76  E-value=0.0088  Score=43.84  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .....+++.|++|+|||++++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.75  E-value=0.0086  Score=44.66  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999988753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.75  E-value=0.0049  Score=46.45  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++|.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999875

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.75  E-value=0.081  Score=37.79  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      +++.++|+|+...  ......+..+|.+|+++..+ ..++..+...+..+.........+.+|+|+.+....  ...+  
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD--  191 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence            5789999998543  23455677899999999865 566777777777776554434568889999985332  2333  


Q ss_pred             HHHHHHhCCcEEEe
Q 028813          137 KAFADEIGIPFMET  150 (203)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (203)
                       .+...++.+++..
T Consensus       192 -~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 -EIEKVIGRPISKR  204 (245)
T ss_dssp             -HHHHHHTSCEEEE
T ss_pred             -HHHHHhCCCeEEE
Confidence             3444567777655

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.73  E-value=0.0052  Score=45.90  Aligned_cols=85  Identities=15%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccccccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      .++.++||+|.......    ....+.  ..+.+++|+|++..  ...+.++...+.   .-+ ..-+|+||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence            57899999996643221    112222  35678889987643  223333322222   111 23456799997532  


Q ss_pred             CCHHHHHHHHHHhCCcEEEee
Q 028813          131 VSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~S  151 (203)
                        ...........++|+..+.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              1345566667788776554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.71  E-value=0.0054  Score=50.27  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999887743

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.71  E-value=0.0078  Score=44.89  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ....++|.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.66  E-value=0.0079  Score=45.69  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.66  E-value=0.0067  Score=43.54  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++|.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.64  E-value=0.0047  Score=47.05  Aligned_cols=20  Identities=35%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0085  Score=49.26  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSYI   34 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~~   34 (203)
                      ++|+|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999885543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.64  E-value=0.0062  Score=45.71  Aligned_cols=86  Identities=26%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccccccch-------hhh-----ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           57 IKLQIWDTAGQERFRTIT-------SSY-----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      .++.++|+||........       ...     -...+.+++|+|+....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            468899999953221111       111     12468889999987432  12221 12222211  2 2356679999


Q ss_pred             CCCCccCCHHHHHHHHHHhCCcEEEeec
Q 028813          125 LTANKVVSYETAKAFADEIGIPFMETSA  152 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      ....    .-.+..+....++|+.++..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            6322    22356677788988887754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.62  E-value=0.0059  Score=46.70  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -+.|+|++|+|||||+..+.+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.61  E-value=0.0068  Score=45.09  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.+++.|++|+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.59  E-value=0.0082  Score=46.73  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      .+.+|++++|...|||||+++.+.
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHHH
Confidence            578999999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.59  E-value=0.0061  Score=46.31  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.0064  Score=46.59  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++|.|++|+|||||++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0065  Score=47.72  Aligned_cols=21  Identities=38%  Similarity=0.621  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|++.|+||+|||+|++++.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999976

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.55  E-value=0.0065  Score=42.95  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+|.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.53  E-value=0.0093  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..|+|.|.+||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999998874

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.52  E-value=0.0073  Score=45.62  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|++|+|||+|++++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999863

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.007  Score=47.59  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .--|++.||||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999863

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.47  E-value=0.0073  Score=46.43  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.47  E-value=0.0092  Score=45.57  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999987653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.43  E-value=0.0097  Score=41.78  Aligned_cols=19  Identities=47%  Similarity=0.651  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5789999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0078  Score=47.38  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999863

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.42  E-value=0.0083  Score=45.24  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-.+++.|+||+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.35  E-value=0.011  Score=44.90  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.31  E-value=0.012  Score=44.14  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-|+|+|++|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999998743

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.0089  Score=46.47  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      --|++.|+||+|||.|++++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            45899999999999999999763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.29  E-value=0.0043  Score=45.38  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+++.|++|+|||+|++++..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.28  E-value=0.0097  Score=45.53  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|.|++|+|||++++.+..
T Consensus        72 ~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.26  E-value=0.011  Score=41.85  Aligned_cols=24  Identities=29%  Similarity=0.205  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-.-|+|.|.+||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999998853

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.25  E-value=0.011  Score=42.34  Aligned_cols=24  Identities=29%  Similarity=0.278  Sum_probs=17.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-.-|+|.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.22  E-value=0.01  Score=47.96  Aligned_cols=19  Identities=37%  Similarity=0.665  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      ++|+|++|||||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.22  E-value=0.011  Score=44.86  Aligned_cols=21  Identities=29%  Similarity=0.684  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.22  E-value=0.012  Score=40.26  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      =+++.|++|+||||+.-.|..+
T Consensus        18 gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            4899999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.21  E-value=0.009  Score=53.56  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +|+|+|++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999998863

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.21  E-value=0.0094  Score=47.79  Aligned_cols=22  Identities=41%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++++|++|+|||+|++++.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.17  E-value=0.0096  Score=48.33  Aligned_cols=21  Identities=43%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++++|++|+|||||++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.17  E-value=0.013  Score=43.94  Aligned_cols=23  Identities=48%  Similarity=0.624  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.+++.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.17  E-value=0.01  Score=45.53  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.++|.|++|+|||++++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.16  E-value=0.012  Score=42.90  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..++|.|++|+|||++++.+...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            46899999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.15  E-value=0.0085  Score=48.68  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -..|+|+|++|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            357999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-63
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-59
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	9e-58
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-57
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-56
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	9e-54
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-53
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-53
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-52
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-51
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-49
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-49
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-48
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-45
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-43
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-41
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-40
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-39
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-39
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-39
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-38
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-38
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-38
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-37
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-37
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-36
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-35
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-35
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	9e-34
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-33
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-33
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-33
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-33
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-33
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-30
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-29
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-28
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-28
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-28
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-27
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-27
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-24
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-24
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-24
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-23
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	7e-22
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-17
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	9e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	8e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	8e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.001
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  192 bits (488), Expect = 2e-63
 Identities = 102/170 (60%), Positives = 137/170 (80%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
            YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKC
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           D+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  183 bits (464), Expect = 2e-59
 Identities = 137/193 (70%), Positives = 153/193 (79%), Gaps = 4/193 (2%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKC
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ----PSM 179
           DL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M+ Q     + 
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 181

Query: 180 NNARPPTVQIKGQ 192
                  V +KGQ
Sbjct: 182 KKEDKGNVNLKGQ 194

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  177 bits (450), Expect = 9e-58
 Identities = 93/166 (56%), Positives = 131/166 (78%), Gaps = 1/166 (0%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           + K+LLIGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127
           ERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGNK D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
            +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (448), Expect = 2e-57
 Identities = 85/166 (51%), Positives = 124/166 (74%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (437), Expect = 7e-56
 Identities = 85/168 (50%), Positives = 124/168 (73%), Gaps = 1/168 (0%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIW 62
            YD  FK++L+GDSGVGK+CLL+RF D +++  ++IST+G+DF+ + ++ DG  +KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122
           DTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  167 bits (423), Expect = 9e-54
 Identities = 88/168 (52%), Positives = 126/168 (75%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           +   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (422), Expect = 2e-53
 Identities = 89/172 (51%), Positives = 122/172 (70%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           L   + V  + A+AFA++  + F+ETSA DSTNVE+AF  +   I   ++ +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (421), Expect = 2e-53
 Identities = 83/165 (50%), Positives = 112/165 (67%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y Y+FK ++IGD GVGKSCLL +F +  ++     TIGV+F  R +E  G+ IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           L A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 5e-52
 Identities = 81/171 (47%), Positives = 116/171 (67%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + +   GK +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
           AGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 125 LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
           L A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 172

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (410), Expect = 2e-51
 Identities = 72/181 (39%), Positives = 114/181 (62%), Gaps = 11/181 (6%)

Query: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE----------QD 53
           +YDYL KLL +GDSGVGK+  L R+ D+ +   +I+T+G+DF+ + V             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 54  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASD 112
              + LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++      +
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 113 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           N + +L+GNK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I  R
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

Query: 173 M 173
           M
Sbjct: 181 M 181

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 5e-49
 Identities = 89/167 (53%), Positives = 120/167 (71%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I  ++
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (390), Expect = 9e-49
 Identities = 68/161 (42%), Positives = 106/161 (65%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+ +G+  VGK+ L+ RF  DS+  +Y +TIG+DF  +T+  + +TI+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 4e-48
 Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 4   EYDYL--FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           + D L   K+L+IG+SGVGKS LLLRF DD++     +TIGVDFK++T+  DG   KL I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
                 N+ V       FA +  + F+E SAK    V+ AF  +   I   
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (365), Expect = 6e-45
 Identities = 61/165 (36%), Positives = 105/165 (63%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y FK++L+G+  VGK+ L+LR+ ++ + + +I+T+G  F  + +   GK + L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126
           QERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 171
             + VS + A+++A+ +G     TSAK +  +E+ F+ +   + +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 6e-43
 Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K++++G  GVGKS L ++F   ++IE Y  TI  DF  + +E D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
           +F ++   Y +   G I+VY + +Q+SF ++K   ++I R    + V  +LVGNK DL +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + VS    +A A+E G PFMETSAK  T V++ F  +   + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  138 bits (348), Expect = 2e-42
 Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 2/166 (1%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++G  GVGKS L L+F  D ++E Y  T   D   + V  DG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLT 126
           E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 2e-41
 Identities = 78/162 (48%), Positives = 107/162 (66%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +TV  D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           R+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           + V ++ A+++AD+  + FMETSAK S NV + FMA+A  + 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 2e-40
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 6/169 (3%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
             LFK++L+GD GVGKS L+ R+  + +      TIGV+F  + +E DG  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGN 121
           GQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 122 KCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 169
           K D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF      +
Sbjct: 124 KIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 67/162 (41%), Positives = 102/162 (62%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ L+GD+GVGKS ++ RF +DS+  +   TIG  F  +TV+   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           RFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GNKCDLT  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
           + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I 
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 2e-39
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
           P      KL+++G  GVGKS L ++F    ++  Y      D   +    DG   +L I 
Sbjct: 1   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDIL 59

Query: 63  DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGN 121
           DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +LVGN
Sbjct: 60  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 119

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 173
           K DL + + V    A AF     + + E SAK   NV++AF  +  +++   
Sbjct: 120 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 3e-39
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           +     + K +++GD  VGK+CLL+ +A+D++ E Y+ T+  D    +V   GK   L +
Sbjct: 3   HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGL 61

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
           +DTAGQE +  +    Y      +I + V +  SF NVK+      +  + NV  LL+G 
Sbjct: 62  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 121

Query: 122 KCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 168
           + DL  +              +  E  +  A EIG   ++E SA     ++  F     +
Sbjct: 122 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

Query: 169 I 169
           I
Sbjct: 182 I 182

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (326), Expect = 4e-39
 Identities = 71/164 (43%), Positives = 110/164 (67%), Gaps = 5/164 (3%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           +FK+++IGDS VGK+CL  RF    + +   +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERF-RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDL 125
           ERF +++   YYR  H ++ VYD+T+  SF+++  W+ E  ++  ++++ ++LVGNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDST---NVEQAFMAMA 166
            +   V  + A+ FAD   +P  ETSAK+     +VE  FM +A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 1e-38
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V    +T  L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA 127
            +  +   Y R   G + V+ + + +SF ++ Q+  +I R    D+V  +LVGNKCD  A
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 14/174 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  +++   YI T+  D     V  DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
            +  +    Y      +I + +    SF NV+       R+   N   +LVG K DL  +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 129 KVVS------------YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 169
           K               Y    A A EIG + ++E SA     ++  F     ++
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 4e-38
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++G  GVGKS L ++F    ++E Y  TI  D   + VE D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127
           +F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 128 NKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIK 170
            +VV  E  +  A +     F+E+SAK   NV + F  +   I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 7e-38
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K +++GD  VGK+CLL+ +  + +   Y+ T+  D    TV   G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
            +  +    Y      ++ + V    SF NVK+       +       LLVG + DL  +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 129 KVV------------SYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
                          + ETA+  A ++  + ++E SA     ++  F     +  +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 176 QPS 178
           + S
Sbjct: 183 KKS 185

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  126 bits (316), Expect = 2e-37
 Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 4/178 (2%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V  D + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKC 123
           ERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 181
           DL   +V +         +  IP+ ETSAK++ NVEQAF  +A +   +       N 
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (314), Expect = 3e-37
 Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KL+L+G++ VGKS ++LRF  + + E+   TIG  F  + V  +  T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT--- 126
           F ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
             + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I  +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 3e-36
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           ++L+++G  GVGKS L ++F    ++  Y  TI  D   +    D +  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
            F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    D    +L+GNK DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL+++GD   GK+CLL+  + D + E Y+ T+  +  +  +E DGK ++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
            +  +    Y     I++ + +   +S  N+ +      ++   NV  +LVGNK DL  +
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 129 KVV------------SYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 169
           +                E  +  A+ IG   +ME SAK    V + F     + 
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 9e-35
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +++ + G  GVGKS L+LRF   ++ ESYI T+   ++            LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKCDLT 126
           +F  +        H  I+VY +T ++S   +K    +I     D  +   +LVGNKCD +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 127 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 175
            ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 170

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 9e-34
 Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTA 127
            F  +   Y R   G +IVY VTD+ SF +V ++   I R         +LV NK DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 172
            + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+ +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 2e-33
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++GDS  GK+ LL  FA D + E+Y+ T+  +    + E D + I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN- 128
           +  +    Y  +  ++I +D++  E+ ++V +      +    N   LLVG K DL  + 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 129 -----------KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIKDR 172
                        VSY+     A +IG   ++E SA  S N V   F     +  ++
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTI-KLQIWDTAG 66
           + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF  + V  DG  +  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----LLVGNK 122
           QERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+ N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 123 CDLTANKVVSYE-TAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR 172
            D   +K +  E +A+  A  +G IP   TSAK++ NV+ AF  +A S   +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-33
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 9/166 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G    GK+ +L +      + +                  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIP-----TVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
           + R +   YY G  G+I V D  D++  +  +Q L+ I       +   L+  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 128 NKV---VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
                 +  +       +       + A     + +    + ++ K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  114 bits (286), Expect = 5e-33
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R      + +   TIG + +        K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
             R     YY     +I V D TD++  +   + L+ + +     +   L+  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 128 NKVVS---YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
               S    E       +     + +SA     + +    +   IK+ 
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (284), Expect = 8e-33
 Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           K++++G+  VGKS ++ R+    + + Y  TIGVDF  R ++ + + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
           F  IT +YYRGA   ++V+  TD+ESF  +  W  E       ++   LV NK DL  + 
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 130 VVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
            +  E A+  A  + + F  TS K+  NV + F  +A   
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 2e-31
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KL + G +GVGKS L++RF    +I  Y  T+           D + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN-EIDRYASDNVNKLLVGNKCDLTA 127
                   + R   G ++VYD+TD+ SF  V    N   +     NV  +LVGNK DL  
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 172
           ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           ++L++G    GK+ +L +            T            + K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129
            R +   Y++   G+I V D  D+E  N  ++ L  +          LLV        N 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 130 V----VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           +    ++ +               T A     + +    ++  +
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           FKL+L+GD G GK+  + R     + + Y++T+GV+        +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128
           +F  +   YY  A   II++DVT + ++ NV  W  +      +N+  +L GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIKDR 122

Query: 129 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
           KV     +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-29
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K+ ++G   VGKS L ++F +  +++SY  TI  +   + +  +G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTA 127
            +     +Y    +G I+VY VT  +SF  +K      +D      +  +LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
            +V+SYE  KA A+     F+E+SAK++      F  +    +
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            K++++G    GK+ +L +F+ +  + +  +      +I          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQE 70

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVGNKCDLTA 127
             R+  ++YY     +I+V D TD+E  +  ++ L + +          L+  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 128 NKV---VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
                 +S         +         A     + Q    M + +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +LL++G    GK+ +L +F  +      + TI           + +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
             R+   +Y+    G+I V D  D++   + ++ L  +           L+  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 128 NKVVSYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR 172
               +        D I          SA    ++      +   I  R
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
           +K+LL+G  GVGKS L   F          +        R++  DG+   L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
             R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
           ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 9/173 (5%)

Query: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
           +    D   ++LL+G    GK+ LL + A +        T G + K        +  KL 
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIK----SVQSQGFKLN 63

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLV 119
           +WD  GQ + R    SY+     +I V D  D++ F    Q L E+        V  L+ 
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 120 GNKCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 169
            NK DL        ++         +        SA     V+     +  ++
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.6 bits (247), Expect = 6e-27
 Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 43/198 (21%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KLLL+G    GKS  + +        S + T G+         D +++  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIH--GSGVPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQES-----------FNNVKQWLNEIDRYASDNVNKL 117
             R      +     I+ +  +++ +              +   +   I      N + +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 118 LVGNKCDLTANKVVSYETAKAFADEIGIPFM--------------------------ETS 151
           L  NK DL   K++       F +  G                               T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 152 AKDSTNVEQAFMAMAASI 169
           A D+ N+   F A+  +I
Sbjct: 177 ATDTENIRFVFAAVKDTI 194

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 7e-27
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           +  ++++LIG+ GVGKS L   FA     ++S    +G D   RT+  DG++  + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 65  A-GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNK 122
              +     +     +     +IVY +TD+ SF    +   ++ R    +++  +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 123 CDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
            DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.9 bits (240), Expect = 6e-26
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 45/200 (22%)

Query: 8   LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
           L K+LL+G    GKS  L +      I     T G+       + + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRI---IHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-----------ASDNVNK 116
              R      +     I+ +   ++ +      +  N +                 NV+ 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIGIPFM---------------------------E 149
           +L  NK DL   KV        F +  G P                              
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 150 TSAKDSTNVEQAFMAMAASI 169
           T+A ++ N+   F  +  +I
Sbjct: 175 TTAINTENIRLVFRDVKDTI 194

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 1e-24
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 13/174 (7%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L ++GD+  GKS L+ RF   SY          +   + +  DG+T  + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-----ASDNVNKLLVGNKC 123
             +     +   A  +I V+ + D+ SF  V +   ++            +  +   ++ 
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 124 DLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 176
             ++ +VV    A+A   ++    + ET A    NV++ F  +A  +      Q
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.1 bits (227), Expect = 3e-24
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
           KLL +G    GK+ LL    +D      ++T+   +   + E     IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKND-----RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD----- 124
            R +   Y+   +GI+ + D  D E F+  +  L+ +   A       ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 125 ------LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 166
                  +A  +++   ++    +  +     S        +AF  ++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.9 bits (230), Expect = 4e-24
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 20/195 (10%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y    +LLL+G    GKS ++ +          + T G+       +     +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMFDV 54

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID-----------RYASDN 113
            GQ   R      +     II V   +            N +                  
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 114 VNKLLVGNKCDLTANKVVSYETA-KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           ++ +L  NK DL A KV++ ++  + +  E         A      +         I+D 
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 173 MASQPSMNNARPPTV 187
                + +       
Sbjct: 175 FLRISTASGDGRHYC 189

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 6e-24
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            ++L++G  G GK+ +L R            T              K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127
             R     YY     +I V D  D++     K  L  +           ++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 128 NKVVS---YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
               S            +      +TSA   T +++A   +  ++K R
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 4e-23
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            +L L+G    GK+  +   A   + E  I T+G + +  T       + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN----VTIKLWDIGGQP 58

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127
           RFR++   Y RG   I+ + D  DQE     K  L+ +        +  L++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 128 ---NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 170
               K +  +   +   +  I     S K+  N++     +    K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.6 bits (213), Expect = 7e-22
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 46/198 (23%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
            KLLL+G    GKS ++ +        + I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 69  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-----------WLNEIDRYASDNVNKL 117
             R      + G   II    ++D +      +           + +  +     + + +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 118 LVGNKCDLTANKVVSYETAKAFADEIG--------------------------IPFMETS 151
           L  NK DL   K+        + +  G                          I    T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 152 AKDSTNVEQAFMAMAASI 169
           A D+ NV+  F A+   I
Sbjct: 174 ATDTKNVQFVFDAVTDVI 191

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.6 bits (192), Expect = 5e-19
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 21/181 (11%)

Query: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
           Y    KL+ +G    GK+ LL    DD   +   +      ++         +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-----AGMTFTTFDL 64

Query: 65  AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKC 123
            G  + R +  +Y    +GI+ + D  D E     K+ L+ +    +  NV  L++GNK 
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 124 DLTANKVVS---------------YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS 168
           D                          +    +   +     S        + F  MA  
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 169 I 169
           I
Sbjct: 185 I 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 10  KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
            +L +G    GK+ L +R     Y ++  ++I     I  V  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEI---DRYASDNVNKLLVGNKCDL 125
              +   +   A  ++ V D    +    +V ++L ++        ++ + L+  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 126 TANKVVSYETAKAFADEIGIPFMETSAKDST 156
              K       +    E+    +  SA  ST
Sbjct: 121 AMAKSAK-LIQQQLEKELNTLRVTRSAAPST 150

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 25/174 (14%)

Query: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
           Y   +++ G    GK+ LL     DS       T+     +   + DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 67  QERFRTITSSYY-----RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKL 117
             + R   S Y           I +V    D +      ++L +I           ++ L
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 118 LVGNKCDLTANKVVSYETAKAFADEI---------GIPFMETSAKDSTNVEQAF 162
           +  NK +L        +   A   EI          +  +E    +    E   
Sbjct: 116 IACNKSEL-FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (113), Expect = 5e-08
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 15/159 (9%)

Query: 9   FKLLLIGDSGVGKSCLLLRFA-DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT--- 64
            K+++ G    GKS LL   A  ++ I + I+    D     +  DG  + +        
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 65  ---AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121
                +             A  ++ + D T  ++ +  + W  E        +   +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRN 120

Query: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160
           K D+T             ++  G   +  SA+    V+ 
Sbjct: 121 KADITGET-------LGMSEVNGHALIRLSARTGEGVDV 152

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 7/120 (5%)

Query: 9   FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR--TVEQDGKTIKLQIWDTAG 66
             + + G++G GKS  +         E   +  GV          +      +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 67  QERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124
                    +Y      +       ++      N       I            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 27/168 (16%), Positives = 45/168 (26%), Gaps = 13/168 (7%)

Query: 13  LIGDSGVGKSCLLLRFAD-DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---- 67
           L+G    GKS LL         I  Y  T            + +     + D  G     
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF--TLADIPGIIEGA 63

Query: 68  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW----LNEIDRYASDNVNKLLVGNKC 123
              + +   + R      ++  V D                     A      L+  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 171
           DL   + V  +         G+  +  SA     +     A+ A ++ 
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 169

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 26/180 (14%), Positives = 45/180 (25%), Gaps = 20/180 (11%)

Query: 13  LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR---------TVEQDGKTIKLQIWD 63
             G S VGKS L+ R             +                           +   
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 64  TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-------ASDNVNK 116
              ++          +     ++V D           +   EI             ++  
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 117 LLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 172
           ++  NK D   N                 EI   F+  SAK   N+E+    +   I++R
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 40  TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 99
           T        + ++     ++   D  G E       S      G I+V    +       
Sbjct: 69  TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128

Query: 100 KQWLNEIDRYASDNVNKLLV-GNKCDLTANK--VVSYETAKAFADEIG---IPFMETSAK 153
           ++    +       V  L++  NK D+ + +  +  Y   K F        +P +  SA 
Sbjct: 129 REHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSAL 185

Query: 154 DSTNVEQAFMAMAASIK 170
              N++     +   IK
Sbjct: 186 HKINIDSLIEGIEEYIK 202

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 22/165 (13%), Positives = 43/165 (26%), Gaps = 10/165 (6%)

Query: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
           D   ++   G S  GKS  L    +   +     T G    I   E       + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 66  GQ-------ERFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNK 116
                     +++     Y      +  +  + D         +Q +          +  
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 117 LLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQ 160
           L   +K    A K       +A     G +     S+     V++
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 16/182 (8%)

Query: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFA-DDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
           PE     K+ ++G   VGKS L       +  + S I     D     V  DG+      
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VF 60

Query: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTD--------QESFNNVKQWLNEIDRYASDN 113
            DTAG  R   +            +V  +            +    +Q            
Sbjct: 61  VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120

Query: 114 VNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPFMETSAKDSTNVEQAFMAMAAS 168
              ++V NK DL  ++   Y+       E        P + TSA    N+++   AM  +
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

Query: 169 IK 170
             
Sbjct: 181 YA 182

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 14/138 (10%)

Query: 9   FKLLLIGDSGVGKSCLLLR-FADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ------- 60
             +L++G  GVGKS  +     +     S   + G    + +  + G T+ +        
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 61  --IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-- 116
               +       ++           ++ V  +      N  K     I       +    
Sbjct: 93  GGYINDMALNIIKSFLLDK--TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKA 150

Query: 117 LLVGNKCDLTANKVVSYE 134
           ++       +    + Y+
Sbjct: 151 IVALTHAQFSPPDGLPYD 168

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 19/160 (11%)

Query: 10  KLLLIGDSGVGKSCLLLRFAD-DSYIESYISTIGVDFKIRTVEQDGKT--------IKLQ 60
           +++++G   VGKS LL R  + D  I + I     D     +   G          ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
             D   +      T      A  ++ V D +      + K      ++          V 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLV------VI 114

Query: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 160
           NK D+           K   D      ++ SA     +E+
Sbjct: 115 NKVDVVEKINEEEIKNKLGTDR---HMVKISALKGEGLEK 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.81
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.71
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.44
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.4
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.21
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.09
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.8
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.58
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.45
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.44
d1okkd2	207	GTPase domain of the signal recognition particle r	98.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.39
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.36
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.1
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.73
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.6
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.57
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.57
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.53
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.49
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.44
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.4
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.37
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.36
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.35
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.32
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.3
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.25
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.24
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.22
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.22
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.19
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.19
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.19
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.18
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.17
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.17
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.17
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.16
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.14
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.13
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.1
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.07
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.07
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.07
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.06
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.05
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.03
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.02
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.02
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.01
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.99
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.99
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.98
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.98
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.96
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.95
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.83
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.82
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.81
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.8
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.8
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.79
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.7
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.69
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.62
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.56
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.48
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.46
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.46
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.44
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.43
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.41
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.35
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.34
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.32
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.29
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.22
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.19
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.16
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.11
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.02
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.9
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.87
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.81
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.8
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.79
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.6
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.58
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.58
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.53
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.45
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.42
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.39
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.38
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.27
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.26
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.25
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.24
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.23
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.2
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.18
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.17
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.13
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.05
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.82
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.78
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.71
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.67
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.66
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.65
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.57
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.4
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.28
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.84
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.64
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.48
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.32
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.0
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.98
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.8
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.48
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.87
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.79
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.61
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.13
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.93
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.72
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.64
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.35
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.33
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.9
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.03
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.4
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.36
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.98
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.74
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.58
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.39
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.99
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.79
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.42
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.82
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.39
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.05
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	81.81
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.53
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.29

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=215.65  Aligned_cols=168  Identities=51%  Similarity=0.885  Sum_probs=156.5

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|.+|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            57899999999999999999999999998888888888889999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      ++|+|++++.++..+.+|+..+........|+++|+||+|+.+...+..++.+.++..+++++++|||++|.||+++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999987777778999999999999777778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028813          165 MAASIKDR  172 (203)
Q Consensus       165 l~~~~~~~  172 (203)
                      |.+.+.+.
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-37  Score=215.65  Aligned_cols=167  Identities=53%  Similarity=0.980  Sum_probs=155.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+...+..+.+.+||+||++++..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            57899999999999999999999999988888888888888888999999899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|+++++++..+..|+..+........|+++++||.|+.+...+..++.+.++..+++++++|||++|.|++++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999998887777778999999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028813          165 MAASIKD  171 (203)
Q Consensus       165 l~~~~~~  171 (203)
                      |.+.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-37  Score=212.49  Aligned_cols=171  Identities=34%  Similarity=0.578  Sum_probs=153.1

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      |+..+.+||+|+|.+|||||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|..++...+..+++.+|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            3456789999999999999999999999888777776654 556678888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++|+|||++++.+++.+..|+..+... ...+.|++||+||+|+.+.+....++.+.++..++++|++|||++|.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999987554 4467899999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028813          162 FMAMAASIKDRMA  174 (203)
Q Consensus       162 ~~~l~~~~~~~~~  174 (203)
                      |+.|++.+.++++
T Consensus       160 f~~l~~~i~k~~~  172 (173)
T d2fn4a1         160 FEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=214.21  Aligned_cols=172  Identities=77%  Similarity=1.211  Sum_probs=159.9

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      ..++.+||+|+|.++||||||+++|....+...+.++.+.......+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46899999999999999999999999998888888988888888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|+|+++++++..+..|+..+........|+++|+||.|+.+...+..++...++...++.++++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999888777778899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 028813          164 AMAASIKDRMAS  175 (203)
Q Consensus       164 ~l~~~~~~~~~~  175 (203)
                      +|.+.+.+....
T Consensus       162 ~l~~~i~~~~~~  173 (194)
T d2bcgy1         162 TMARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHHCCH
T ss_pred             HHHHHHHHHhhh
Confidence            999998866543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-37  Score=210.77  Aligned_cols=164  Identities=50%  Similarity=0.904  Sum_probs=154.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+|+|.+++|||||+++|.+..+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            68899999999999999999999999988888888888888899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|+++++++..+..|+..+........|+++++||.|+........++.+.++..+++++++|||++|.|++++|.+|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988888889999999999998777788888999999999999999999999999999999


Q ss_pred             HHHH
Q 028813          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-37  Score=212.11  Aligned_cols=170  Identities=52%  Similarity=0.871  Sum_probs=153.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .|.+||+|+|++|||||||+++|.+..+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            37899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.+++.+..|+..+......+.|++||+||+|+...+....++...++..++++++++||++|.||+++|.+|
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999988777889999999999997777788889999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 028813          166 AASIKDRMAS  175 (203)
Q Consensus       166 ~~~~~~~~~~  175 (203)
                      ++.+.++.++
T Consensus       161 ~~~i~~~~~~  170 (173)
T d2a5ja1         161 AKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-37  Score=213.15  Aligned_cols=165  Identities=37%  Similarity=0.761  Sum_probs=147.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+..........++..+.+.+||++|..++..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            68999999999999999999999999998999999988888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      |||++++++++.+..|+..+........|+++|+||.|+...+.+..++.+.++.++++++++|||++|.||+++|.+|.
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999988776666789999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028813          167 ASIKD  171 (203)
Q Consensus       167 ~~~~~  171 (203)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=211.21  Aligned_cols=171  Identities=51%  Similarity=0.837  Sum_probs=155.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            68999999999999999999999999988888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|+|++++.++..+..|+..+..+...+.|+++|+||+|+.+.+....+....+...++.++++|||++|.|++++|++|
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999988888889999999999998766677777788888899999999999999999999999


Q ss_pred             HHHHHHHhccC
Q 028813          166 AASIKDRMASQ  176 (203)
Q Consensus       166 ~~~~~~~~~~~  176 (203)
                      .+.+.+...++
T Consensus       162 ~~~i~~~~~~~  172 (175)
T d2f9la1         162 LTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHhhhc
Confidence            99987665543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-37  Score=210.89  Aligned_cols=165  Identities=30%  Similarity=0.387  Sum_probs=134.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|||||||+++|.+...... . ++..+.+...+.+++..+.+.+||++|++++..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-A-EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-C-Ceeeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            37999999999999999999998765333 2 333345567788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  166 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  166 (203)
                      ||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.+...+.++++..++++|++|||++|.|++++|++|.
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999999866543 5689999999999988778888999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 028813          167 ASIKDRMA  174 (203)
Q Consensus       167 ~~~~~~~~  174 (203)
                      +.+..++.
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            98877654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=210.94  Aligned_cols=171  Identities=47%  Similarity=0.837  Sum_probs=158.6

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|.+|||||||+++|....+...+.++.+.......+..++....+.+||++|++++..++..++..+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            47889999999999999999999999998888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|+++++++..+..|+..+......+.|+++|+||+|+.............++..+++++++|||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999998887788999999999999777778888889999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 028813          165 MAASIKDRMAS  175 (203)
Q Consensus       165 l~~~~~~~~~~  175 (203)
                      |.+.+.++++.
T Consensus       162 l~~~i~~~~~~  172 (174)
T d2bmea1         162 CARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999877654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-37  Score=212.70  Aligned_cols=170  Identities=60%  Similarity=1.065  Sum_probs=129.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+++|.++||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            57899999999999999999999999888888888888888899999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      |+|+|++++.++..+..|+..+......+.|+++|+||.|+........++...++..+++++++|||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998777888999999999999887778888888999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028813          165 MAASIKDRMA  174 (203)
Q Consensus       165 l~~~~~~~~~  174 (203)
                      |.+.+.+++.
T Consensus       163 l~~~i~~k~~  172 (173)
T d2fu5c1         163 LARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999987653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-37  Score=211.12  Aligned_cols=162  Identities=34%  Similarity=0.653  Sum_probs=150.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||++|+.++...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999888888889888888888999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++.+++.+..|++.+..... +.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999876654 5899999999999887788889999999999999999999999999999999998


Q ss_pred             HHH
Q 028813          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-36  Score=207.21  Aligned_cols=164  Identities=41%  Similarity=0.715  Sum_probs=154.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.++||||||+++|....+...+.++.+..........++....+.+||++|..++...+..++..+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999998888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      +|||++++++++.+..|+..+........|+++|+||.|+.+.+.+..++.++++..++++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999998888888889999999999998777888999999999999999999999999999999999


Q ss_pred             HHHH
Q 028813          166 AASI  169 (203)
Q Consensus       166 ~~~~  169 (203)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8876

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-36  Score=206.70  Aligned_cols=164  Identities=34%  Similarity=0.593  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|.+|||||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||++|...+......++..+|++++|+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~   84 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVF   84 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEee
Confidence            8999999999999999999999888888777765 566777888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      |++++.+++.+..|+..+.. ......|+++|+||+|+...+.+..++.+++++.++++|++|||++|.||+++|.+|++
T Consensus        85 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~  164 (171)
T d2erya1          85 SVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR  164 (171)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHH
Confidence            99999999999999987644 34457899999999999888888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 028813          168 SIKDRM  173 (203)
Q Consensus       168 ~~~~~~  173 (203)
                      .+.+++
T Consensus       165 ~i~k~~  170 (171)
T d2erya1         165 VIRKFQ  170 (171)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            986553

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=206.81  Aligned_cols=162  Identities=42%  Similarity=0.741  Sum_probs=151.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+|+|.+|||||||+++|.+..+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999998888888888888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      |++++.+++.+..|+..+......+.|+++|+||.|+.+......++..+++..++++|++|||++|.||+++|++|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999887777789999999999998777788889999999999999999999999999999999987


Q ss_pred             HH
Q 028813          169 IK  170 (203)
Q Consensus       169 ~~  170 (203)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            64

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-36  Score=205.96  Aligned_cols=164  Identities=31%  Similarity=0.516  Sum_probs=148.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.+|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||++|...+..+...++..+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4668999999999999999999999888888888877553 567788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|||+++++++..+..|+..+... ...+.|+++|+||+|+...+.+..++++.++.+++++|++|||++|.||+++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999888654 4467899999999999877788899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=204.58  Aligned_cols=164  Identities=37%  Similarity=0.617  Sum_probs=148.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+++|||||++++.+..+...+.++.+ +.+...+..++..+.+.+||++|...+...+..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999888877777765 44566778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCC-CHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  165 (203)
                      ||++++.+++.+..|+..+... ...+.|+++++||+|+.+.+.+..+++++++.+++++|+++||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            9999999999999999988655 44578999999999998888889999999999999999999999886 999999999


Q ss_pred             HHHHHHH
Q 028813          166 AASIKDR  172 (203)
Q Consensus       166 ~~~~~~~  172 (203)
                      ++.+.++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.2e-36  Score=206.65  Aligned_cols=164  Identities=38%  Similarity=0.626  Sum_probs=145.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+|+|.+|||||||+++|+.+.+...+.+|.+.. +...+.+++..+.+.+||++|..++...+..+++.+|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccc-cccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            35899999999999999999999988888888887754 35667789999999999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||.|+.+.+.+..++++.++..+++++++|||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999886543 4578999999999998777888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=206.79  Aligned_cols=163  Identities=27%  Similarity=0.430  Sum_probs=141.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.+|||||||+++|..+.+...+.++.+ ..........+..+.+.+||++|++++...+..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            469999999999999999999999998888888776 4456667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecC
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAK  153 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (203)
                      |||++++++++.+..|+.........+.|+++|+||+|+.+.            ..+..++.++++..++ ++|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999987555444444557999999999998532            3477888899998865 799999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMAASIK  170 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~  170 (203)
                      +|.||+++|+.+++.+.
T Consensus       161 ~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         161 TQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999987664

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=210.39  Aligned_cols=171  Identities=42%  Similarity=0.806  Sum_probs=150.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCC----------eEEEEEEEeCCCccccccch
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG----------KTIKLQIWDTAGQERFRTIT   74 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~   74 (203)
                      .++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++          ..+.+.+||++|++++..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            57899999999999999999999999988888888777776666665433          34679999999999999999


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ..+++++|++|+|||++++.+++.+..|+..+... .....|+++|+||.|+...+.+..+++++++.++++++++|||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999999999876443 33567899999999998888889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Q 028813          154 DSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                      +|.|++++|++|.+.+.+++++
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999877654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-35  Score=201.37  Aligned_cols=166  Identities=51%  Similarity=0.971  Sum_probs=143.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      .+..+||+++|+++||||||+++|+.+.+... ..++.+.+.....+..++..+.+.+|||+|++++...+..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            46889999999999999999999998876544 45556677788888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +++|+|++++.++..+..|+..+........|+++|+||.|+.+...+..+++..++..+++++++|||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888777777889999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      +|.+.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=204.94  Aligned_cols=163  Identities=48%  Similarity=0.800  Sum_probs=152.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|||||||+++|..+.+...+.++.+...........+..+.+.+||++|.+.+...+..+++.+|+++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            57999999999999999999999998888889998888888888999899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++++++.+..|...+......+.|+++|+||+|+.+.+.+..+..++++..+++++++|||++|.||+++|.+|.+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999887777778999999999999887888999999999999999999999999999999999987


Q ss_pred             HHH
Q 028813          168 SIK  170 (203)
Q Consensus       168 ~~~  170 (203)
                      .+.
T Consensus       166 ~i~  168 (170)
T d1r2qa_         166 KLP  168 (170)
T ss_dssp             TSC
T ss_pred             HHh
Confidence            654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-35  Score=204.55  Aligned_cols=165  Identities=33%  Similarity=0.575  Sum_probs=143.5

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcE
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   83 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   83 (203)
                      +....+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            567899999999999999999999999988888888776 4556677788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhC-CcEEE
Q 028813           84 IIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIG-IPFME  149 (203)
Q Consensus        84 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~  149 (203)
                      +++|||++++++++.+.. |+..++.. ..+.|+++|+||+|+.+            .+.+..++..+++..++ +.|++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999988765 55555544 45799999999999864            34577888999999888 79999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q 028813          150 TSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       150 ~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      |||++|.||+++|+.+++.+.
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999998774

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-36  Score=207.20  Aligned_cols=162  Identities=33%  Similarity=0.499  Sum_probs=144.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|+|||||+++|++..+...+.++.+. ........++..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE-EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceee-ccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            589999999999999999999999888888887764 3455667888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      ||+++++++..+..|+..+....  ..+.|+++|+||+|+...+.+..+++++++..+++++++|||++|.||+++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998875543  3578999999999997777888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028813          166 AASIK  170 (203)
Q Consensus       166 ~~~~~  170 (203)
                      ++.+.
T Consensus       161 ~~~~~  165 (171)
T d2erxa1         161 LNLEK  165 (171)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-35  Score=201.42  Aligned_cols=164  Identities=57%  Similarity=1.036  Sum_probs=145.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+++|||||+++|+...+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            68999999999999999999999998888899999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      +|++++++++.+..|+..+........|++++++|.|+.. +....++.++++..+++++++|||++|.|++++|++|.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999888888777889999999999754 456678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028813          168 SIKDR  172 (203)
Q Consensus       168 ~~~~~  172 (203)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=202.98  Aligned_cols=164  Identities=38%  Similarity=0.639  Sum_probs=147.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|.+|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|...+......+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            3679999999999999999999999988877777766 556677788888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.++..+..|+..+.... ..+.|++||+||+|+.+.+....++.+.++..+++++++|||++|.|++++|.+
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999999886544 357899999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          165 MAASIK  170 (203)
Q Consensus       165 l~~~~~  170 (203)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=199.52  Aligned_cols=164  Identities=33%  Similarity=0.524  Sum_probs=142.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|++|+|||||+++|+.+.+...+.+|.+..+. ..+..++..+.+.+||++|...+. ....++..+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            489999999999999999999999988888888776544 445578888999999999987764 456678899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCC-HHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN-VEQAFMAM  165 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l  165 (203)
                      +|++++.++..+..|+..+.. ....+.|+++|+||+|+...+.+..+++++++.+++++|++|||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999998876644 3445799999999999987778889999999999999999999999985 99999999


Q ss_pred             HHHHHHHh
Q 028813          166 AASIKDRM  173 (203)
Q Consensus       166 ~~~~~~~~  173 (203)
                      .+.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987664

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=199.66  Aligned_cols=163  Identities=40%  Similarity=0.714  Sum_probs=149.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|.+++...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999988888998888888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---CccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA---NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      |||++++.+++.+..|+..+........|+++++||.|+.+   .+.+..++.+++++.++++|+++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777777899999999999854   356788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          164 AMAASI  169 (203)
Q Consensus       164 ~l~~~~  169 (203)
                      .|.+.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=199.28  Aligned_cols=164  Identities=35%  Similarity=0.599  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++.+||+++|.+|||||||+++|..+.+...+.++.+.. ....+..++..+.+.+||++|...+...+..+++.+|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            367999999999999999999999999888888777644 4566677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-CCcEEEeecCCCCCHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+........++...++.++ ++++++|||++|.||+++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999988554 4457899999999999887778888888888774 68999999999999999999


Q ss_pred             HHHHHHH
Q 028813          164 AMAASIK  170 (203)
Q Consensus       164 ~l~~~~~  170 (203)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=196.98  Aligned_cols=163  Identities=37%  Similarity=0.689  Sum_probs=144.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|.++||||||+++|+++.++..+.++.+..+. ..+...+..+.+.+||++|...+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            5699999999999999999999999988888888775544 445678888999999999999999989999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  165 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  165 (203)
                      |+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++++.++..+++++++|||++|.|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999866543 5689999999999854 4567788999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028813          166 AASIKD  171 (203)
Q Consensus       166 ~~~~~~  171 (203)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=204.61  Aligned_cols=161  Identities=32%  Similarity=0.617  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.++||||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|...+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            37999999999999999999999998888889998888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  167 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  167 (203)
                      ||++++++++.+..|+..+..... +.|+++|+||+|+......  ++...++..++++|+++||++|.|++++|.+|.+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998876654 6999999999999665433  2345677788999999999999999999999999


Q ss_pred             HHHH
Q 028813          168 SIKD  171 (203)
Q Consensus       168 ~~~~  171 (203)
                      .+..
T Consensus       160 ~l~~  163 (170)
T d1i2ma_         160 KLIG  163 (170)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            8863

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-34  Score=198.22  Aligned_cols=162  Identities=30%  Similarity=0.521  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ..||+|+|.+|+|||||+++|..+.+...+.++.+ +........++..+.+.+||++|.+.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            36899999999999999999999998888877765 55566777888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKD  154 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      ||++++++++.+..|...+......+.|++||+||+|+.+.            +.+..++.+.++.+++ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999998877555443444457999999999998643            3467788899999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028813          155 STNVEQAFMAMAASIK  170 (203)
Q Consensus       155 ~~~i~~~~~~l~~~~~  170 (203)
                      |.||+++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-34  Score=196.79  Aligned_cols=165  Identities=28%  Similarity=0.424  Sum_probs=140.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCC---ccccccchhhhccCCc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG---QERFRTITSSYYRGAH   82 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d   82 (203)
                      ..+||+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++..+.+.+||+++   ++++  .+..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            5699999999999999999999987654 33445666677888888999999999999875   3333  4566789999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  161 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  161 (203)
                      ++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++.++++..+++++++|||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999999999888654 3457999999999999887788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028813          162 FMAMAASIKDRM  173 (203)
Q Consensus       162 ~~~l~~~~~~~~  173 (203)
                      |..|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999987664

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-33  Score=193.54  Aligned_cols=165  Identities=41%  Similarity=0.744  Sum_probs=144.7

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .+..+||+|+|.++||||||+++|..+.+...+.++.+..........++..+.+.+||++|.......+..++..+|++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            46789999999999999999999999988888888888888888888899999999999999998888899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCCCCHH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVE  159 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  159 (203)
                      ++++|.+++.+++.+..|+..+....    ..+.|+++|+||.|+.+ +.+..+++++++++++ ++|++|||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            99999999999999999998875543    24689999999999854 5678888999998875 899999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          160 QAFMAMAASIK  170 (203)
Q Consensus       160 ~~~~~l~~~~~  170 (203)
                      ++|++|++.+.
T Consensus       162 e~f~~l~~~il  172 (174)
T d1wmsa_         162 AAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-33  Score=197.85  Aligned_cols=167  Identities=39%  Similarity=0.701  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+...+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999998888889888888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCccCCHHHHHHHHH-HhCCcEEEeecCCCCCHHHHH
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      +|.+++.++..+..|+..+.....    .+.|+++|+||+|+.+. ....++...++. ..++++++|||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988855432    35799999999998654 456666666664 457999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 028813          163 MAMAASIKDRMAS  175 (203)
Q Consensus       163 ~~l~~~~~~~~~~  175 (203)
                      ++|++.+.+++.+
T Consensus       161 ~~l~~~i~~~~~~  173 (184)
T d1vg8a_         161 QTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc
Confidence            9999988776554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=194.95  Aligned_cols=167  Identities=48%  Similarity=0.825  Sum_probs=150.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ...+||+++|.+|+|||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|++++..++..++..+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMA  164 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  164 (203)
                      +|+|++++.++..+..|+..+..... ...|+++++||.|.. .+.+...+.++++..++++++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998865433 468899999999974 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028813          165 MAASIKDRM  173 (203)
Q Consensus       165 l~~~~~~~~  173 (203)
                      |++.+.+..
T Consensus       164 l~~~l~~~p  172 (177)
T d1x3sa1         164 LVEKIIQTP  172 (177)
T ss_dssp             HHHHHHTSG
T ss_pred             HHHHHccCc
Confidence            999887553

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=196.61  Aligned_cols=167  Identities=41%  Similarity=0.742  Sum_probs=131.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeC-CeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .+||+++|.+|||||||+++|.+..+...+.++.+........... .....+.+||++|++++...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            6899999999999999999999988887777777666666555544 345778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCc-cCCHHHHHHHHHHhC-CcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANK-VVSYETAKAFADEIG-IPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  160 (203)
                      |+|++++.+++.+..|+.++....    ..+.|+++++||+|+.+.+ .+..++.++++..++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999999885432    2478999999999997643 367788889998886 7999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028813          161 AFMAMAASIKDRMA  174 (203)
Q Consensus       161 ~~~~l~~~~~~~~~  174 (203)
                      +|.+|.+.+.++++
T Consensus       162 ~f~~l~~~~l~~~~  175 (175)
T d1ky3a_         162 AFEEIARSALQQNQ  175 (175)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccC
Confidence            99999998887653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=196.62  Aligned_cols=164  Identities=30%  Similarity=0.560  Sum_probs=141.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      .++.+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999998888888776 45566777889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC------------ccCCHHHHHHHHHHhC-CcEEEe
Q 028813           85 IIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKAFADEIG-IPFMET  150 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  150 (203)
                      ++|||++++++++.+.. |...+... ..+.|++||+||+|+.+.            ......+...++..++ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999976 55555444 456899999999997543            2345667788888877 799999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028813          151 SAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       151 Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ||++|.||+++|..|++.+.
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-33  Score=192.67  Aligned_cols=159  Identities=45%  Similarity=0.859  Sum_probs=142.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhccCCcEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGII   85 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   85 (203)
                      +.+||+++|.+|||||||+++|..+.+...+.++.+................+.+||++|...+.. .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            479999999999999999999999998888888888888888888999999999999999876644 4677899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCC---CCCHHHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD---STNVEQA  161 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~  161 (203)
                      +|||++++.+++.+..|+..+.... ..+.|++||+||+|+.+.+.+..++++++++.+++++++|||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999886653 45789999999999988778899999999999999999999987   5699999


Q ss_pred             HHHH
Q 028813          162 FMAM  165 (203)
Q Consensus       162 ~~~l  165 (203)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-32  Score=189.87  Aligned_cols=163  Identities=29%  Similarity=0.491  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      ..||+++|.+|||||||+++|..+.++..+.++.+ +.....+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999998888887765 45556677888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------CccCCHHHHHHHHHHhC-CcEEEeecCC
Q 028813           88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKAFADEIG-IPFMETSAKD  154 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  154 (203)
                      ||++++++++.+..|+.........+.|+++|+||.|+..            ...+..++...+++.++ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988755444333445799999999999853            34578888999998887 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 028813          155 ST-NVEQAFMAMAASIKD  171 (203)
Q Consensus       155 ~~-~i~~~~~~l~~~~~~  171 (203)
                      |. |++++|+.+++.+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            97 599999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.6e-31  Score=181.56  Aligned_cols=162  Identities=25%  Similarity=0.342  Sum_probs=133.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      ..+||+++|.++||||||+++|++..+... .++.+ +.+...+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            469999999999999999999999887543 34433 445677888999999999999997654     36888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCC--CccCCHHHHHHHHHH-hCCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTA--NKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  160 (203)
                      |||++++.+++.+..|+..+....   ....|+++|+||.|+..  .+.+..++.+.++.. ++++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999998875543   35679999999988743  455677788888654 578999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 028813          161 AFMAMAASIKDRMAS  175 (203)
Q Consensus       161 ~~~~l~~~~~~~~~~  175 (203)
                      +|..|++.+...+.+
T Consensus       157 ~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999988776654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=8e-32  Score=185.20  Aligned_cols=156  Identities=25%  Similarity=0.420  Sum_probs=126.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      .++||+++|+++||||||+++|..+.+...+.+|.+.+  ...+..++  +.+.+||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceee--eeeeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            36899999999999999999999988887777776644  34455555  889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH-----HHHhCCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |+|++++++++.+..|+..+ ......+.|+++|+||.|+.+...  ..++.+.     +...+++++++||++|.|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999998877766 333446799999999999865432  2222222     122346899999999999999


Q ss_pred             HHHHHHHH
Q 028813          161 AFMAMAAS  168 (203)
Q Consensus       161 ~~~~l~~~  168 (203)
                      +|+||++.
T Consensus       155 ~~~~l~~~  162 (164)
T d1zd9a1         155 TLQWLIQH  162 (164)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=7.3e-31  Score=180.51  Aligned_cols=158  Identities=23%  Similarity=0.392  Sum_probs=123.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|++|||||||+++|.+.... ...++.+  .....+..++  +.+.+||++|...+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            3589999999999999999999987653 4445554  3444555655  889999999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHHH
Q 028813           87 VYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        87 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      ++|+++..++.....++... ......+.|+++|+||.|+.+...  .++.....     ...++++++|||++|.|+.+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999988877765544 434446799999999999865443  22222221     12246799999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          161 AFMAMAASIKD  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +|+||++.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=3.1e-31  Score=184.24  Aligned_cols=159  Identities=26%  Similarity=0.360  Sum_probs=124.7

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCc
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH   82 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   82 (203)
                      .+.++.+||+++|++|||||||+++|.+..+... .++.+  +....+...+  +.+.+||++|.+.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            4557889999999999999999999998876422 22333  3445555555  78999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCC
Q 028813           83 GIIIVYDVTDQESFNNVKQWLNEID-RYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDST  156 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  156 (203)
                      ++|+|+|++++.++..+..|+..+. .....+.|+++++||+|+.+...  .....+..     ....+++++|||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            9999999999999999988776663 33445789999999999965432  22222221     2234679999999999


Q ss_pred             CHHHHHHHHHHH
Q 028813          157 NVEQAFMAMAAS  168 (203)
Q Consensus       157 ~i~~~~~~l~~~  168 (203)
                      |++++|+||.+.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.9e-31  Score=185.37  Aligned_cols=161  Identities=22%  Similarity=0.362  Sum_probs=122.3

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEE
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   84 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   84 (203)
                      ..+.+||+++|.+|||||||+++|.+..... ..++.+.  ........+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccce--EEEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            4578999999999999999999998776532 3344443  333444555  8899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH-----HHHhCCcEEEeecCCCCCH
Q 028813           85 IIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        85 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i  158 (203)
                      ++|+|++++.++.....|+..+ ......+.|+++|+||+|+.+..  ...++...     +...++++++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            9999999999998888877654 33344578999999999986432  22333222     1233467999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028813          159 EQAFMAMAASIKDR  172 (203)
Q Consensus       159 ~~~~~~l~~~~~~~  172 (203)
                      +++|+||.+.+.++
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=7.1e-30  Score=176.84  Aligned_cols=157  Identities=22%  Similarity=0.422  Sum_probs=121.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+++|.++||||||+++|....... ..++.+  ..........  +.+.+||+||...+...+..++..++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETT--EEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceee--eeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            467999999999999999999999876533 233333  2333344444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHH-----HHHhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAF-----ADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +|+|+++..++..+..|+... ........|+++++||+|+.+...  ..++...     +...++.+++|||++|+|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999888877655 333445799999999999865422  2222221     12235679999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      |+|+||.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=3.1e-28  Score=166.09  Aligned_cols=154  Identities=19%  Similarity=0.324  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEE
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY   88 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (203)
                      +||+++|++|||||||+++|.+..+.........   .....  +...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEEEE--eeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6899999999999999999998776544333222   12222  334488999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHH-----HHHHHhCCcEEEeecCCCCCHHHHH
Q 028813           89 DVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAK-----AFADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        89 d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      |+.++.++..+..|+..+.. ......|+++++||.|+.+....  .++.     .++...++++++|||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH--HHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999988887776633 33456899999999998654322  2222     2233346789999999999999999


Q ss_pred             HHHHHHH
Q 028813          163 MAMAASI  169 (203)
Q Consensus       163 ~~l~~~~  169 (203)
                      +||.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=8.8e-26  Score=154.99  Aligned_cols=159  Identities=26%  Similarity=0.426  Sum_probs=121.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   87 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (203)
                      .+||+++|.+|||||||+++|.+..+... .++.+  ........++  +.+.+||.++...+.......+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            39999999999999999999998876543 23332  3344444555  7889999999999988899999999999999


Q ss_pred             EECCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHH----HHHHhCCcEEEeecCCCCCHHHHH
Q 028813           88 YDVTDQESFNNVKQWLN-EIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FADEIGIPFMETSAKDSTNVEQAF  162 (203)
Q Consensus        88 ~d~~~~~s~~~~~~~~~-~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~~~  162 (203)
                      +|+.+..++.....+.. .+........|+++++||.|+..... ..+....    ++...+++++++||++|.|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99998887777666443 34444455789999999999965432 1122222    233445789999999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          163 MAMAASIKDR  172 (203)
Q Consensus       163 ~~l~~~~~~~  172 (203)
                      ++|.+.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=159.06  Aligned_cols=157  Identities=20%  Similarity=0.347  Sum_probs=115.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+.+||+|+|.+|||||||+++|.+..+.... ++.+  .........+  ..+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            46799999999999999999999997764322 2222  2223333444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHH-----HHhCCcEEEeecCCCCCHH
Q 028813           86 IVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  159 (203)
                      +++|.++..++.....+.... ........|+++|+||.|+.....  ..++....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999888776655444 233335789999999999865432  23333322     2234689999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      ++++||.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.1e-25  Score=154.81  Aligned_cols=158  Identities=19%  Similarity=0.147  Sum_probs=111.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhh
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSS   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~   76 (203)
                      .+.-.|+|+|.+|||||||+++|++..... ...+..+...........+  ..+.+||+||......        ....
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            455679999999999999999999876432 3334444455555555665  6889999999643322        2233


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDS  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  155 (203)
                      .+..+|++++|+|++++..... ..|...+... ..+.|+++|+||+|+.+..   .+..+.+....+ ..++++||++|
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCC
Confidence            4688999999999987654322 3344555443 3358999999999986543   233444445444 57899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIK  170 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~  170 (203)
                      .|+++++++|.+.+.
T Consensus       156 ~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         156 RQVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999987653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.6e-25  Score=152.85  Aligned_cols=151  Identities=23%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhcc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR   79 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   79 (203)
                      +||+++|.+|||||||+++|++.... ....++.........+...+  ..+.+||++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987643 23334444445555666666  6788999999543321        1334568


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      .+|++++++|..+....+....|...+... ..+.|+++|+||+|+.......       ....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            899999999999887766666555555443 3468999999999985543211       11235789999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          160 QAFMAMAASI  169 (203)
Q Consensus       160 ~~~~~l~~~~  169 (203)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.3e-24  Score=144.93  Aligned_cols=151  Identities=21%  Similarity=0.300  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   89 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (203)
                      ||+++|++|||||||+++|.++.+. ...++.+  .........+  ..+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999988764 3344443  3334444444  678899999999999899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHH------------HhCCcEEEeecCCCC
Q 028813           90 VTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFAD------------EIGIPFMETSAKDST  156 (203)
Q Consensus        90 ~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  156 (203)
                      .++...+.....+...... ......|+++++||.|+....  ...++.+...            ...+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999988877776665533 344578999999999985432  3333322221            123469999999999


Q ss_pred             CHHHHHHHHHH
Q 028813          157 NVEQAFMAMAA  167 (203)
Q Consensus       157 ~i~~~~~~l~~  167 (203)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.92  E-value=3.6e-25  Score=153.66  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-------cceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY   78 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   78 (203)
                      .+.++|+++|.+|+|||||+|+|++.........       ..+.......+...+  ..+.++|++|+.++.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            3678999999999999999999996432211111       111111222233344  6788999999998888888889


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHHH----hCCcEEEeec
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADE----IGIPFMETSA  152 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa  152 (203)
                      ..+|++++++|+.++...+. +..+..+..   .++|+++|+||+|+.+.+...  .+..+.+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            99999999999987543222 222222322   368999999999986643221  1112222221    1368999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028813          153 KDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       153 ~~~~~i~~~~~~l~~~~~~  171 (203)
                      ++|.|++++++.|.+.+.+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.3e-24  Score=148.90  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   82 (203)
                      .|+|+|.+|||||||+|+|++...........+.......... .....+.+||+||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee-cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999987654433333333333333322 22357889999994321       111223467889


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813           83 GIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus        83 ~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      ++++++|+....  .+.....|+...... ..++|+++|+||+|+...+.  .+...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986542  333333344332211 12479999999999966433  2344455556789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028813          161 AFMAMAASIKD  171 (203)
Q Consensus       161 ~~~~l~~~~~~  171 (203)
                      +++.|.+.+..
T Consensus       159 L~~~i~~~l~~  169 (180)
T d1udxa2         159 LKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999888753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.3e-24  Score=149.42  Aligned_cols=157  Identities=24%  Similarity=0.254  Sum_probs=115.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|..|||||||+++|....++.     .+  .....+....  ..+.+||++|+..+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~--~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----TG--IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----CS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-----cc--EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            46999999999999999999998765532     22  2334455555  889999999999999999999999999999


Q ss_pred             EEECCChhhH-----------HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---------------ccCCHHHHH---
Q 028813           87 VYDVTDQESF-----------NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---------------KVVSYETAK---  137 (203)
Q Consensus        87 v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~---------------~~~~~~~~~---  137 (203)
                      ++|+++.+++           +....|...+........|+++++||.|+...               .........   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999877654           33344555565555667899999999996211               011112111   


Q ss_pred             --HHHHH------hCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          138 --AFADE------IGIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       138 --~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                        .+...      ..+.+++|||+++.||+++|+.+.+.+.++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              11111      124678999999999999999999887653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.3e-23  Score=146.53  Aligned_cols=161  Identities=24%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc------------c
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------------T   72 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------------~   72 (203)
                      ...+||+|+|.+|||||||+|+|++.... ....+..+.......+..++  ..+.++|++|.....            .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            45699999999999999999999986642 22233333334444556666  577888999954321            2


Q ss_pred             chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-----CCcE
Q 028813           73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----GIPF  147 (203)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  147 (203)
                      .....+..+|++++|+|++.+.. .....++..+..   .+.|+++|+||+|+.........+..+...+.     .+++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            23334578999999999986543 222333433433   26899999999998766554445444433322     3589


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      +++||++|.|+++++++|.+.+..+
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998877765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.9e-25  Score=154.29  Aligned_cols=160  Identities=21%  Similarity=0.192  Sum_probs=122.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|..|||||||+++|....+  .+.||.+...  ..+....  +.+.+||++|+..+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEE--EEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEE--EEEeccc--eeeeeccccccccccccccccccccceeeE
Confidence            468999999999999999999987765  3567776443  3444444  789999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----------------cCCHHHHHHH
Q 028813           87 VYDVTDQE-----------SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK----------------VVSYETAKAF  139 (203)
Q Consensus        87 v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~----------------~~~~~~~~~~  139 (203)
                      ++|.++..           ..+....|...+......+.|+++++||.|+....                .........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99987753           34556778888876666789999999999973211                1122222222


Q ss_pred             HH----H------hCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          140 AD----E------IGIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       140 ~~----~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      ..    .      ..+.++++||++|.||+++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21    1      124578999999999999999999888754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=9.8e-24  Score=145.33  Aligned_cols=157  Identities=18%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhcc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYR   79 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   79 (203)
                      .|+|+|.+|||||||+++|++.... ....+..+.......+...+  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999986643 22223333233344455555  6789999999422         1222344567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHH
Q 028813           80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  159 (203)
Q Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (203)
                      .+|++++++|.+....... ..++..+...   ++|+++|+||+|+.+..  ..+...++.......++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999876544322 3344444433   67999999999985321  1122222322233578999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 028813          160 QAFMAMAASIKDRMA  174 (203)
Q Consensus       160 ~~~~~l~~~~~~~~~  174 (203)
                      +++++|.+.+.+...
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999999876644

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=4.7e-23  Score=143.26  Aligned_cols=157  Identities=23%  Similarity=0.315  Sum_probs=111.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      .+..||+++|.+|||||||+++|.+..+... .++.+.+  ...+..++  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4679999999999999999999998876533 2333322  33445555  67789999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh-----------------CCcE
Q 028813           86 IVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----------------GIPF  147 (203)
Q Consensus        86 ~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~  147 (203)
                      +++|+.+...+.....+.... ......+.|+++++||.|+...  .....+.+.....                 ++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            999999988877666544433 3333457999999999998543  3344444433221                 2358


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ++|||++|+|++|+|+||.+++
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=7e-24  Score=147.63  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------------ccch
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------------RTIT   74 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~   74 (203)
                      .|+++|.+|||||||+|+|++.....+..++.+.+.  ..+...    .+.++|+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--cccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998876555555444332  233333    3568999994211               1112


Q ss_pred             hhhccCCcEEEEEEECCChhhHHHHHH-------HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC---
Q 028813           75 SSYYRGAHGIIIVYDVTDQESFNNVKQ-------WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG---  144 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~-------~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---  144 (203)
                      ...++.+|++++|+|+...........       ....+......++|+++|+||+|+.+..+   .....+.....   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~  152 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPL  152 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH---HHHHHHHHHHTCCG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHH---HHHHHHHHHhcccc
Confidence            334577899999999875433211110       01111222223689999999999865432   22222222222   


Q ss_pred             ----CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          145 ----IPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       145 ----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                          ..++++||++|.|+++++++|.+.+.++
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                2488999999999999999999988763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.3e-23  Score=141.84  Aligned_cols=149  Identities=23%  Similarity=0.217  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc---------cchhhhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSSYY   78 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   78 (203)
                      +||+++|.+|||||||+|+|++.... ....+..+.......+...+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999976532 33344444444555566666  678899999942110         1122235


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCH
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV  158 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (203)
                      ..+|++++|+|++++...+...-+. .+     ...++++++||.|+.+..  ..+.+... ...+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            7899999999999876544332221 11     246899999999986543  23333222 123578999999999999


Q ss_pred             HHHHHHHHHH
Q 028813          159 EQAFMAMAAS  168 (203)
Q Consensus       159 ~~~~~~l~~~  168 (203)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7e-23  Score=144.28  Aligned_cols=159  Identities=21%  Similarity=0.270  Sum_probs=108.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEE
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   86 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   86 (203)
                      +.+||+++|.+|||||||+++|.   +...+.||.+.  ....+....  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            46999999999999999999994   34456677764  445566665  789999999999999999999999999999


Q ss_pred             EEECCChhh----------HHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCc----------------cCCHHHHHHH
Q 028813           87 VYDVTDQES----------FNNVKQWLNE-IDRYASDNVNKLLVGNKCDLTANK----------------VVSYETAKAF  139 (203)
Q Consensus        87 v~d~~~~~s----------~~~~~~~~~~-i~~~~~~~~p~ilv~nK~D~~~~~----------------~~~~~~~~~~  139 (203)
                      ++|.++...          +.....++.. +......+.|+++++||.|+.+..                ....+...++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999887432          3333333333 344444689999999999973210                1122223222


Q ss_pred             HHH-----------hCCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          140 ADE-----------IGIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       140 ~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                      ...           ..+.++++||+++.+|+++|+.+.+.+.++
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            221           125577899999999999999998887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=3e-23  Score=148.99  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEE----------------EeCCeEEEEEEEeCCCccccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTV----------------EQDGKTIKLQIWDTAGQERFRTI   73 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~   73 (203)
                      .|+|+|.+++|||||+++|++.........+.+........                .+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998643211111111111011111                11223357899999999998887


Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC-------------HH------
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-------------YE------  134 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~~------  134 (203)
                      ....+..+|++|+|+|+.++-..... ..+..+.   ..++|+++++||+|+.......             ..      
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILR---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHH---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh-HHHHHhh---cCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            77788999999999999875443322 2222232   2368999999999986543211             00      


Q ss_pred             -HHH----HHHHH--------------hCCcEEEeecCCCCCHHHHHHHHHHHHHHHhcc
Q 028813          135 -TAK----AFADE--------------IGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  175 (203)
Q Consensus       135 -~~~----~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  175 (203)
                       ...    .+...              ..++++++||++|.|++++++.|.....+++.+
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence             000    01100              014689999999999999999999888776654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=8.9e-22  Score=138.15  Aligned_cols=162  Identities=17%  Similarity=0.209  Sum_probs=106.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceee--eEEEEEE-------------------eCCeEEEEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVD--FKIRTVE-------------------QDGKTIKLQI   61 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~--~~~~~~~-------------------~~~~~~~~~i   61 (203)
                      ...++|+++|..++|||||+++|++......   .....+..  +......                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            4568999999999999999999987432111   11111111  1111111                   0112356899


Q ss_pred             EeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccC--CHHHHHHH
Q 028813           62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAF  139 (203)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~  139 (203)
                      +|+||+..|.......+..+|++++|+|+.++.......+.+..+....  ..++++++||+|+.+....  ....+.++
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999998888888889999999999988643233334444444332  2357888999998654321  12233333


Q ss_pred             HHHh---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          140 ADEI---GIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       140 ~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ....   .++++++||++|+|++++++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3333   26899999999999999999887754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=8.9e-23  Score=142.17  Aligned_cols=157  Identities=18%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc----cchh---hhccCCc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TITS---SYYRGAH   82 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~d   82 (203)
                      +|+|+|.+|||||||+|+|++........+..+.+.........+. ..+.+||+||..+..    ....   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999986654343334343444444444321 467899999953221    1111   2245678


Q ss_pred             EEEEEEECCChhhHHHH---HH--HHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeecCCC
Q 028813           83 GIIIVYDVTDQESFNNV---KQ--WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDS  155 (203)
Q Consensus        83 ~~i~v~d~~~~~s~~~~---~~--~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~  155 (203)
                      .++++++....+.....   ..  ...........++|+++|+||+|+.+..    +..+.+....  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            88888876543321111   11  1111222222468999999999986532    2233333333  578999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIKD  171 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~~  171 (203)
                      .|+++++++|.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999888753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=4.7e-22  Score=139.59  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=94.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc------------
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE--SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------   70 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------   70 (203)
                      .+...+|+|+|.+|||||||+|+|++.....  ...++.+.+  ........   .+.+.|+++....            
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~--~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--LNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CC--EEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeee--cccccccc---cceEEEEEeeccccccccccchhhh
Confidence            3455689999999999999999999865321  222222222  22222222   3345676663211            


Q ss_pred             -ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh----CC
Q 028813           71 -RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI----GI  145 (203)
Q Consensus        71 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~----~~  145 (203)
                       .......+..+|++++++|+..+... ...++++.+..   .++|+++|+||+|+...... .+..+.+...+    ..
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTS
T ss_pred             HHhhhhccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHH-HHHHHHHHHHhcccCCC
Confidence             11122344677999999999865432 22344444433   26899999999998654332 12233333332    35


Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHH
Q 028813          146 PFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       146 ~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      +++.+||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            799999999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.3e-20  Score=132.06  Aligned_cols=118  Identities=21%  Similarity=0.354  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhccCCcEEEEEE
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVY   88 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~   88 (203)
                      +|+|+|++|||||||+++|++..+.... ++.+.+.....+ .......+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999987765443 444433333222 23345789999999998774 45677889999999999


Q ss_pred             ECCChhhH-HHHHHHHHH-HH--hhcCCCCcEEEEEeCCCCCCCc
Q 028813           89 DVTDQESF-NNVKQWLNE-ID--RYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        89 d~~~~~s~-~~~~~~~~~-i~--~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      |+++..+. ....+++.. +.  .......|+++++||+|+....
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99987653 344444433 32  2234568999999999997543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=1.3e-20  Score=133.06  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccccceee--eEEEEEE------------------------eCCeE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVD--FKIRTVE------------------------QDGKT   56 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~--~~~~~~~------------------------~~~~~   56 (203)
                      ...++|+++|+.++|||||+++|++......   .......+  .....+.                        .....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3458999999999999999999986322110   00000000  0001100                        01123


Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YE  134 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~  134 (203)
                      ..+.++|+||+..|.......+..+|++|+|+|+.++-.-...++.+..+....  -.|+++++||+|+.+.....  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHH
Confidence            478999999999998877778889999999999987632222233333333322  24788999999997643221  11


Q ss_pred             HHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 028813          135 TAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       135 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      ....+....   +++++++||++|.|++++++.|.+++
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            222222222   36899999999999999999877654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=3.9e-21  Score=134.29  Aligned_cols=157  Identities=15%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD----------------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ..++|+++|+.++|||||+++|++.                ....+...+.+++.....+...+  ..+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence            3589999999999999999999741                11222333333333334444444  78899999999999


Q ss_pred             ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC---HHHHHHHHHHhC---
Q 028813           71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YETAKAFADEIG---  144 (203)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~---  144 (203)
                      .......+..+|++++|+|+.++..-+. ++.+..+..+.  ..|+++++||+|+.......   ..++..+...++   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            8888888899999999999997643222 33333333322  35788999999986543211   112334444343   


Q ss_pred             --CcEEEeecCCC----------CCHHHHHHHHHHH
Q 028813          145 --IPFMETSAKDS----------TNVEQAFMAMAAS  168 (203)
Q Consensus       145 --~~~~~~Sa~~~----------~~i~~~~~~l~~~  168 (203)
                        ++++++|+++|          .++.++++.|.+.
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              67999999988          4777777666443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2.3e-21  Score=138.49  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=114.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhhccCCcEEE
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   85 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   85 (203)
                      ++..||+++|..|||||||+++|....+    .||.+  +....+..++  +.+.+||++|+..++..|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG--~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG--IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS--CEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC--eEEEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            4578999999999999999999975433    35555  4455566666  88999999999999999999999999999


Q ss_pred             EEEECCChh----------hH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----C-------------------
Q 028813           86 IVYDVTDQE----------SF-NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV----V-------------------  131 (203)
Q Consensus        86 ~v~d~~~~~----------s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~----~-------------------  131 (203)
                      +++|.++.+          .+ +....|...+......+.|++|++||+|+.+.+.    .                   
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999987532          22 2333344445444445799999999999842210    0                   


Q ss_pred             -------CHHHHH-----HHHHHh--------CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028813          132 -------SYETAK-----AFADEI--------GIPFMETSAKDSTNVEQAFMAMAASIKDR  172 (203)
Q Consensus       132 -------~~~~~~-----~~~~~~--------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  172 (203)
                             ......     .+...+        .+..+++||.++.+|+.+|+.+.+.+.++
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                   011221     222211        24467899999999999999988887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-19  Score=125.54  Aligned_cols=157  Identities=18%  Similarity=0.143  Sum_probs=101.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cccceeeeEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhh
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSS   76 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   76 (203)
                      +.-.|+|+|.+|||||||+|+|++....... .++............+.  ..+..+|++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4556999999999999999999987653222 22232233333343444  46667888874321         112222


Q ss_pred             hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC-CcEEEeecCCC
Q 028813           77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDS  155 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  155 (203)
                      ....+++++++.|..+....  ...+...+   .....|.++++||.|............+.+...++ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~--~~~~~~~l---~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD--DEMVLNKL---REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH--HHHHHHHH---HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccchh--HHHHHHHh---hhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            34567888889997754321  12222222   23457889999999987665433444555555555 58999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 028813          156 TNVEQAFMAMAASIK  170 (203)
Q Consensus       156 ~~i~~~~~~l~~~~~  170 (203)
                      .|+++++++|.+.+.
T Consensus       157 ~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         157 LNVDTIAAIVRKHLP  171 (179)
T ss_dssp             TTHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999877653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=8.8e-20  Score=128.39  Aligned_cols=142  Identities=15%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC------C-----------CCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD------S-----------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ..++|+++|++++|||||+++|+..      .           .+.+.....+++.....+.+++  ..+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4589999999999999999999731      0           0111122445555566666666  6788999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccCC---HHHHHHHHHHhC-
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETAKAFADEIG-  144 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~-  144 (203)
                      |.......+..+|++|+|+|+.++-..+..+.|. .+...   +.| +++++||+|+.+.....   ..++..+...++ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            9888888899999999999998875544333332 23222   555 67789999986543211   123333334333 


Q ss_pred             ----CcEEEeecCC
Q 028813          145 ----IPFMETSAKD  154 (203)
Q Consensus       145 ----~~~~~~Sa~~  154 (203)
                          ++++..|++.
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence                5688888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.81  E-value=3.3e-19  Score=126.68  Aligned_cols=152  Identities=23%  Similarity=0.235  Sum_probs=100.6

Q ss_pred             CCCceeeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCccccceeeeEEEE
Q 028813            3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDS--YI-------------------------------ESYISTIGVDFKIRT   49 (203)
Q Consensus         3 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~~~   49 (203)
                      .+++..++|+++|..++|||||+.+|+...  ..                               .+...+.++......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            356788999999999999999999996311  10                               011112233333334


Q ss_pred             EEeCCeEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCC
Q 028813           50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-NKLLVGNKCDLTAN  128 (203)
Q Consensus        50 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~ilv~nK~D~~~~  128 (203)
                      +...+  ..+.++|+||+..|......-+..+|++|+|+|+.+...-+.. +.+..+...   ++ .+++++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~~---gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL---GIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHHc---CCCEEEEEEEccccccc
Confidence            44444  6889999999999988888888999999999999876443322 222223222   44 47889999999764


Q ss_pred             ccCCHH----HHHHHHHHhC-----CcEEEeecCCCCCHHH
Q 028813          129 KVVSYE----TAKAFADEIG-----IPFMETSAKDSTNVEQ  160 (203)
Q Consensus       129 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  160 (203)
                      .+...+    ++..+....+     ++++++||++|+|+.+
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            432222    2334444443     4689999999999843

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.3e-17  Score=121.31  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=84.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--C----------------CCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDS--Y----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      .-+|+++|+.++|||||+.+|+...  .                +.+.....++......+.+++  .++.++||||+..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhh
Confidence            3479999999999999999997311  0                112222334445556677776  7899999999999


Q ss_pred             cccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      |.......+..+|++|+|+|+.++-......-|..    ....+.|.++++||+|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~----a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ----AEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH----HHTTTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH----HHHcCCCEEEEEecccccc
Confidence            99999999999999999999998766555444433    2334799999999999753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=7.4e-19  Score=124.20  Aligned_cols=117  Identities=21%  Similarity=0.357  Sum_probs=82.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccchhhh----ccCCc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY----YRGAH   82 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d   82 (203)
                      |..+|+|+|++|||||||+|+|++....    ++++.......+..++  ..+.+||+||+..+...+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            5678999999999999999999987653    2333333333443444  678899999988766555544    34568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHH----HHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           83 GIIIVYDVTD-QESFNNVKQWL----NEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        83 ~~i~v~d~~~-~~s~~~~~~~~----~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      .+++++|+.+ ..++.....|+    ..+......+.|+++|+||+|+.+..
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8999999764 44444444444    44455566789999999999986543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.5e-18  Score=124.60  Aligned_cols=149  Identities=16%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCCccccceeeeEEEEEEeCCe
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD--SY-----------------------------IESYISTIGVDFKIRTVEQDGK   55 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (203)
                      ..++|+++|+.++|||||+.+|+..  ..                             ..+.....+++.....+.+.+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            4589999999999999999999631  10                             111223445555556666666 


Q ss_pred             EEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 028813           56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF------NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTAN  128 (203)
Q Consensus        56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-~ilv~nK~D~~~~  128 (203)
                       .++.|+|+||+..|-..+..-+..+|++|+|+|+....--      .+..+.+.....+   ++| +++++||+|+.+.
T Consensus        84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCC
Confidence             7899999999999988888889999999999999864210      1222222223222   454 7889999998764


Q ss_pred             ccCCH----HHHHHHHHHhC-----CcEEEeecCCCCCHHH
Q 028813          129 KVVSY----ETAKAFADEIG-----IPFMETSAKDSTNVEQ  160 (203)
Q Consensus       129 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  160 (203)
                      ....+    .++..+....+     ++++++|+..|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            43222    22344444444     5789999999988754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3e-18  Score=118.84  Aligned_cols=160  Identities=14%  Similarity=0.089  Sum_probs=84.2

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc-ceeeeEEEEEEeCCeEEEEEEEeCCC-cccc-------ccc-
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAG-QERF-------RTI-   73 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g-~~~~-------~~~-   73 (203)
                      +.+..++|+++|.+|||||||+|+|++.......... .............+  ......+.++ ....       ... 
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG--KRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT--EEEEECCCCC------CCHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc--cceeeeecccccchhhhhhhhhhhhh
Confidence            4678899999999999999999999987653332221 11112222222222  2222222222 1111       000 


Q ss_pred             --hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHHHh--CCcE
Q 028813           74 --TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEI--GIPF  147 (203)
Q Consensus        74 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~  147 (203)
                        ........+.++.+.+....... ....++..+..   ...++++++||+|+.+.....  .+.+.+.....  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence              11112344556666666554332 22233333332   357899999999986543211  11122222222  2578


Q ss_pred             EEeecCCCCCHHHHHHHHHHHH
Q 028813          148 METSAKDSTNVEQAFMAMAASI  169 (203)
Q Consensus       148 ~~~Sa~~~~~i~~~~~~l~~~~  169 (203)
                      +.+||++|.|++++++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999987654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.74  E-value=1.6e-17  Score=120.65  Aligned_cols=111  Identities=16%  Similarity=0.236  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCccccceeeeEEEEEEeCCeEEEEEEEeCCCccccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS--YI----------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR   71 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   71 (203)
                      +|+|+|+.++|||||+.+|+...  ..                .+.....+.......+.+++  .++.++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            59999999999999999996311  10                01122335555666777777  788999999999998


Q ss_pred             cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      ......+..+|++|+|+|+.++-.......|.. +..   .+.|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhh---ccccccccccccccc
Confidence            888889999999999999998765554444433 222   268999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=8.8e-18  Score=119.86  Aligned_cols=149  Identities=20%  Similarity=0.246  Sum_probs=94.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccccceeeeEEEEEEeCCeE
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDGKT   56 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (203)
                      .++|+++|+.++|||||+.+|+...-                               ..+.....+.......+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            68999999999999999999863110                               111122223233333344444  


Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF------NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV  130 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~  130 (203)
                      +.+.++|+||+..|.......+..+|++|+|+|+.+...-      .+..+.+..+....  ..++++++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~--~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG--LDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhC--CCceEEEEEcccCCCccc
Confidence            7899999999999999898899999999999999975321      12222222232222  346888899999864321


Q ss_pred             --CCH----HHHHHHHHHhC-----CcEEEeecCCCCCHHH
Q 028813          131 --VSY----ETAKAFADEIG-----IPFMETSAKDSTNVEQ  160 (203)
Q Consensus       131 --~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  160 (203)
                        ...    ..+..+...++     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              111    22333334433     5689999999998854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=3e-17  Score=118.32  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=84.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------CCCccccceeeeEEEEEEeCC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------IESYISTIGVDFKIRTVEQDG   54 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (203)
                      ...++|+++|+.++|||||+.+|+...  .                             ..+.....+++.....+...+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            457899999999999999999995311  0                             001111122222222333333


Q ss_pred             eEEEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCC
Q 028813           55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF------NNVKQWLNEIDRYASDNV-NKLLVGNKCDLTA  127 (203)
Q Consensus        55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~-p~ilv~nK~D~~~  127 (203)
                        ..+.+.|+||+..|..........+|++++|+|+.+...-      .+..+.+..+...   ++ ++++++||+|+..
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPS  176 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCc
Confidence              6789999999999988888888999999999999875311      0222333333322   34 4789999999864


Q ss_pred             Ccc--CCHHH----HHHHHHHh-------CCcEEEeecCCCCCHHHHHH
Q 028813          128 NKV--VSYET----AKAFADEI-------GIPFMETSAKDSTNVEQAFM  163 (203)
Q Consensus       128 ~~~--~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  163 (203)
                      ...  ..+++    +..+....       .++++++||++|+||.++++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            321  11111    22222222       25799999999999977543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.8e-15  Score=116.32  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=92.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccc---eeeeEEEEEEeCCeEEEEEEEeCCCccccccchh-----hhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTI---GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-----SYY   78 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----~~~   78 (203)
                      ..++|+|+|.+|+|||||+|+|++...........   +.+.....+...+ ...+.+|||||.........     ..+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            46899999999999999999999855432221111   1111112222222 12578999999654322222     234


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------CccCCHHH----H----HHHHHHh
Q 028813           79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-------NKVVSYET----A----KAFADEI  143 (203)
Q Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~-------~~~~~~~~----~----~~~~~~~  143 (203)
                      ..+|+++++.|..-...-.   +.+..+..   .++|+++|+||+|...       ......+.    +    .......
T Consensus       134 ~~~d~~l~~~~~~~~~~d~---~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKNDI---DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHHHH---HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHHHH---HHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            6678888887754332221   22333333   3689999999999521       11111111    1    1112222


Q ss_pred             CC---cEEEeecCC--CCCHHHHHHHHHHHHHHHh
Q 028813          144 GI---PFMETSAKD--STNVEQAFMAMAASIKDRM  173 (203)
Q Consensus       144 ~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~~~~  173 (203)
                      ++   ++|.+|...  ..|+.++.+++.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            33   578888765  3589999999988876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=8.2e-15  Score=106.29  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccccceeeeEEEEEEeCCeEEEEEEEeCCCccccccc-------hhh-
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TSS-   76 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~-   76 (203)
                      ...++|+++|.+|+|||||+|++++...... ..+..+..........++  ..+.++||||.......       ... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            4679999999999999999999998765432 233444455556666777  67899999995422111       111 


Q ss_pred             -hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCccCCHH
Q 028813           77 -YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVVSYE  134 (203)
Q Consensus        77 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~D~~~~~~~~~~  134 (203)
                       .....|+++||++++...--..-...+..+......  ..++++|+||.|...++....+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e  168 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  168 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHH
Confidence             124568899998886532111112222223222221  2578999999998765554443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=5.9e-15  Score=110.38  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             ee-EEEEEcCCCCCHHHHHHHHhcCC--C--------------CCCccccceeeeEEEEEEe--------------CCeE
Q 028813            8 LF-KLLLIGDSGVGKSCLLLRFADDS--Y--------------IESYISTIGVDFKIRTVEQ--------------DGKT   56 (203)
Q Consensus         8 ~~-~i~v~G~~~sGKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~   56 (203)
                      .+ +|+|+|+.++|||||+.+|+...  .              ..+.....++......+.+              +++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            35 59999999999999999997211  0              1111122222222222222              3356


Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT  126 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~  126 (203)
                      +.+.++||||+..|.......++.+|++++|+|+.++-..+....|.....    .+.|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            789999999999999989899999999999999998766555555544442    368999999999963

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.50  E-value=5.9e-14  Score=104.52  Aligned_cols=104  Identities=11%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA  136 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~  136 (203)
                      +.+.|++|.|...-..   .....+|.+++|.....++..+.+..-+-+        .+-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchHHHHHHH
Confidence            5678888888644322   234559999999999887765444332222        23488999999866543332222


Q ss_pred             HHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 028813          137 KAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIKD  171 (203)
Q Consensus       137 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  171 (203)
                      ..+...          ...+++.+||+++.|+++++++|.+....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            222222          23579999999999999999999776543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=1.7e-14  Score=103.67  Aligned_cols=110  Identities=15%  Similarity=0.028  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCccccccchhh---h--ccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           57 IKLQIWDTAGQERFRTITSS---Y--YRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      ..+.++|+||+..+......   +  ....+.+++++|+..   +............+.  .....|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH--HHhCCCceeeeeccccccH
Confidence            35888999998754332211   1  234568899999753   333222211111111  1125789999999998754


Q ss_pred             ccCCHH-----------------------HHHH---HHH--HhCCcEEEeecCCCCCHHHHHHHHHHH
Q 028813          129 KVVSYE-----------------------TAKA---FAD--EIGIPFMETSAKDSTNVEQAFMAMAAS  168 (203)
Q Consensus       129 ~~~~~~-----------------------~~~~---~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  168 (203)
                      ......                       ....   ...  ...++++++||++|+|+++++.+|.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            221000                       0000   001  124789999999999999999998775

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.6e-13  Score=102.30  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             EEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHH
Q 028813           58 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YET  135 (203)
Q Consensus        58 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~  135 (203)
                      ++.+++|.|....   ...+...+|.+++|.+....+..+.+...+-++        +-++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            4566666664322   123456789999999877666654444433333        337889999986533211  111


Q ss_pred             HHHHHH-------HhCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 028813          136 AKAFAD-------EIGIPFMETSAKDSTNVEQAFMAMAASIK  170 (203)
Q Consensus       136 ~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  170 (203)
                      ......       .+..+++.+||++|.|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            111111       11247999999999999999999876543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.40  E-value=2e-12  Score=94.64  Aligned_cols=83  Identities=18%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeE---------------EEEEEEeCCCcc----
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------IKLQIWDTAGQE----   68 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~----   68 (203)
                      .+||+++|.|+||||||++++++........|+++.+.....+.+.+.+               ..+.++|+||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            3799999999999999999999877665555666656555555554321               258899999932    


Q ss_pred             ---ccccchhhhccCCcEEEEEEEC
Q 028813           69 ---RFRTITSSYYRGAHGIIIVYDV   90 (203)
Q Consensus        69 ---~~~~~~~~~~~~~d~~i~v~d~   90 (203)
                         ......-..++.+|++++|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence               2233344557899999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=1e-11  Score=91.59  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER-   69 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   69 (203)
                      ..++|+++|.|+||||||++++++... .....|.++.+.....+.+.+.               ...+.+.|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            558999999999999999999997654 2344555555555555555442               14688999998321 


Q ss_pred             ------cccchhhhccCCcEEEEEEECCC
Q 028813           70 ------FRTITSSYYRGAHGIIIVYDVTD   92 (203)
Q Consensus        70 ------~~~~~~~~~~~~d~~i~v~d~~~   92 (203)
                            .....-..++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  22234445789999999999754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.4e-10  Score=85.49  Aligned_cols=119  Identities=17%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEEEEe----------CC----------------------
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQ----------DG----------------------   54 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~----------------------   54 (203)
                      ..+|+|+|..++|||||+|+|++..+ +....+++...+.......          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            46899999999999999999999885 4444444322211111100          00                      


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------ccchhhhccCCc-EEEEEEECCChhhHHHHHHHH
Q 028813           55 -----------------KTIKLQIWDTAGQERF-------------RTITSSYYRGAH-GIIIVYDVTDQESFNNVKQWL  103 (203)
Q Consensus        55 -----------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  103 (203)
                                       ....+.++|+||....             ..+...++...+ ++++|.++....+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0013789999995421             123444556666 455677776555444444444


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813          104 NEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus       104 ~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      ..+   ...+.++++|+||+|..+..
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTT
T ss_pred             HHh---CcCCCceeeEEeccccccch
Confidence            444   44457899999999986543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=1.7e-11  Score=91.39  Aligned_cols=83  Identities=18%  Similarity=0.148  Sum_probs=45.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEE----------------------eCCeEEEEEEEeCCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE----------------------QDGKTIKLQIWDTAG   66 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~g   66 (203)
                      ++|+++|.||||||||+|+|++........|+++.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998776555555554433222111                      011235799999999


Q ss_pred             ccc-------cccchhhhccCCcEEEEEEECC
Q 028813           67 QER-------FRTITSSYYRGAHGIIIVYDVT   91 (203)
Q Consensus        67 ~~~-------~~~~~~~~~~~~d~~i~v~d~~   91 (203)
                      .-.       ........++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            422       1222333467899999999985

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.09  E-value=2.6e-10  Score=84.36  Aligned_cols=117  Identities=16%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCccccceeeeEEEE-------------------------------------
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRT-------------------------------------   49 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~-------------------------------------   49 (203)
                      ..+|+|+|..++|||||+|+|++..+ +....+++..-.....                                     
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            45899999999999999999999775 3333332221111110                                     


Q ss_pred             ---------------------EEeCCeEEEEEEEeCCCcccc-------------ccchhhhccCCcEEEEEE-ECCChh
Q 028813           50 ---------------------VEQDGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVY-DVTDQE   94 (203)
Q Consensus        50 ---------------------~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~   94 (203)
                                           +.... ...+.++|+||....             ..+...++..++.+++++ ++....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                 00000 014679999995422             234556778888766654 544333


Q ss_pred             hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028813           95 SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN  128 (203)
Q Consensus        95 s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~  128 (203)
                      .-.....+...   ..+...++++|+||+|....
T Consensus       183 ~~~~~~~~~~~---~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLAKE---VDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHHHH---HCSSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHHHH---hCcCCCeEEEEEeccccccc
Confidence            22223333333   34445789999999998644

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=1.6e-09  Score=78.63  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=83.0

Q ss_pred             hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEeecC
Q 028813           74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK  153 (203)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
                      ....+..+|++++|+|+.+|.+...  ..   +..... ++|.++|+||+|+.+...  .+...++....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~---l~~~~~-~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PM---IEDILK-NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HH---HHHHCS-SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HH---HHHHHc-CCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            4456889999999999988765321  11   112222 689999999999965432  233334445556889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCC-CCCCCCCCcccccCCCCCCCCC
Q 028813          154 DSTNVEQAFMAMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSG  199 (203)
Q Consensus       154 ~~~~i~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  199 (203)
                      ++.+..++...+.+.+.+...... ......+.++.+.+.|+.+||+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSs  127 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKST  127 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHH
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhh
Confidence            999999999888887766544322 2345567788999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=7.8e-09  Score=74.98  Aligned_cols=57  Identities=28%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCccccceeeeEEEEEEeCCeEEEEEEEeCCCc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ   67 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   67 (203)
                      ...++|+|+|.||||||||+|+|.+.... ....|+.+.  ....+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr--~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITT--SQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccc--cceEEECCC---CeEEecCCCc
Confidence            46799999999999999999999986653 333444433  233333333   5789999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=9.7e-08  Score=66.50  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             hccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHh--CCcEEEeecC
Q 028813           77 YYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAK  153 (203)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  153 (203)
                      ...++|.+++|+++.+|+ +...+..++-.....   ++|.+||+||+|+.+...  .+....+...+  +.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            457889999999988764 455566666555433   689999999999965432  22333333332  3689999999


Q ss_pred             CCCCHHHHHHHHH
Q 028813          154 DSTNVEQAFMAMA  166 (203)
Q Consensus       154 ~~~~i~~~~~~l~  166 (203)
                      ++.|++++..+|.
T Consensus        82 ~~~g~~~L~~~l~   94 (225)
T d1u0la2          82 TGMGIEELKEYLK   94 (225)
T ss_dssp             TCTTHHHHHHHHS
T ss_pred             cchhHhhHHHHhc
Confidence            9999999988763

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=8.2e-08  Score=66.54  Aligned_cols=91  Identities=24%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCccccccch----hhhc---c-----CCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813           57 IKLQIWDTAGQERFRTIT----SSYY---R-----GAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~~---~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  123 (203)
                      +++.++||+|...+....    ..+.   .     ..+-.++|+|++... .+..+...+..+      + +--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------N-VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------C-CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------C-CceEEEecc
Confidence            468999999955432221    1111   1     135688999987543 233333322222      1 335678999


Q ss_pred             CCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |....    .-.+.......++|+..++  +|+++++
T Consensus       167 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTAK----GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCCc----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            96432    2345666777899988776  4666644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.2e-08  Score=68.35  Aligned_cols=58  Identities=22%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-C-----CccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSYI-E-----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF   70 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   70 (203)
                      ..+++|++|||||||+|+|.+.... .     ....+..++....-+..++.   ..++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            4689999999999999999875321 1     11111122223333444432   367899997554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.43  E-value=2.6e-07  Score=63.71  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCccccccc----hhhhc--------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813           57 IKLQIWDTAGQERFRTI----TSSYY--------RGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  123 (203)
                      .++.++||+|...+...    ...+.        ...+-.++|+|++.. +....+...+..+      + +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            47899999996544322    11111        134678899998754 3444444444433      2 225578999


Q ss_pred             CCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |....-    -.+..+....++|+..++.  |+++++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            964332    2245567778999877763  555443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=9.5e-08  Score=66.76  Aligned_cols=87  Identities=14%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             hhccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCC--HHHHHHHHHHhCCcEEEeec
Q 028813           76 SYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETSA  152 (203)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa  152 (203)
                      -...++|.+++|+++.+|+ +...+..++-....   .+++.+||+||+|+.+.....  .+...+.....+.+++.+|+
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            3457889999999988764 45666666655433   368889999999997653311  12223334556899999999


Q ss_pred             CCCCCHHHHHHHH
Q 028813          153 KDSTNVEQAFMAM  165 (203)
Q Consensus       153 ~~~~~i~~~~~~l  165 (203)
                      .++.|++++..+|
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999999887764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.9e-07  Score=64.49  Aligned_cols=91  Identities=21%  Similarity=0.267  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCccccccc----hhh---hcc-----CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028813           57 IKLQIWDTAGQERFRTI----TSS---YYR-----GAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKC  123 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~----~~~---~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~  123 (203)
                      +++.++||+|.......    ...   ..+     ..+-.++|+|+... +....+...+..+      + +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            46889999995433221    111   122     23578899998754 3333333333322      1 235678999


Q ss_pred             CCCCCccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          124 DLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       124 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                      |....    .-.+.......++|+..++  .|+++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            96432    2345566778899988776  5666643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=8.5e-06  Score=56.73  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             CcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhC--CcEEEeecCCCCC
Q 028813           81 AHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTN  157 (203)
Q Consensus        81 ~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~  157 (203)
                      .+.+|.++|+....... ....+..++..      .=++|+||+|+....    +.+++..+..+  +++++++ .-...
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v~  190 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDID  190 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCccC
Confidence            57889999998754322 11223333321      237889999986532    34555555554  6777654 22345


Q ss_pred             HHHHH
Q 028813          158 VEQAF  162 (203)
Q Consensus       158 i~~~~  162 (203)
                      ++.+|
T Consensus       191 ~~~ll  195 (222)
T d1nija1         191 LGLLF  195 (222)
T ss_dssp             GGGGS
T ss_pred             HHHhh
Confidence            55554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=1.2e-06  Score=58.68  Aligned_cols=23  Identities=30%  Similarity=0.768  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1.7e-07  Score=65.46  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..+++|++|+|||||+|+|.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4579999999999999999975

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.22  E-value=5.5e-07  Score=62.19  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCcccccc------chhhhc--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028813           57 IKLQIWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA  127 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~  127 (203)
                      .++.++||+|...+..      ....+.  -..+-+++|++++... ....+......+      + +--+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------K-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------T-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------C-cceEEEecccCCC
Confidence            4789999999644331      111111  2346788899987543 232222222211      1 2346789999643


Q ss_pred             CccCCHHHHHHHHHHhCCcEEEeecCCCCCHHH
Q 028813          128 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  160 (203)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  160 (203)
                          ..-.+..+....++|+..++  .|+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                34556777788899988777  4766654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.10  E-value=1.8e-06  Score=59.41  Aligned_cols=84  Identities=19%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCccccccch----hhh--ccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc
Q 028813           57 IKLQIWDTAGQERFRTIT----SSY--YRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK  129 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~  129 (203)
                      .++.++||+|........    ..+  ....+-+++|.|+..... ...+..+.+.+      + .--+++||.|.... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~-~~~~I~TKlDe~~~-  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------G-VTGLVLTKLDGDAR-  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------C-CCEEEEECGGGCSS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------C-CCeeEEeecCcccc-
Confidence            478999999965443321    112  234578899999876543 22222222222      1 22467899996332 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEee
Q 028813          130 VVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                         .-.+..+....+.|+..++
T Consensus       165 ---~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 ---GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ---CHHHHHHHHHHCCCEEEEC
T ss_pred             ---chHHHHHHHHHCCCEEEEe
Confidence               3445667778899887664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.83  E-value=4.9e-06  Score=55.32  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35679999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=5.7e-06  Score=55.48  Aligned_cols=40  Identities=15%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             HHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHHHHHHHhccCC
Q 028813          135 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP  177 (203)
Q Consensus       135 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  177 (203)
                      .+.++...++.+++.+..   .++++.++.+.+.+.+...+.+
T Consensus       147 ~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         147 LLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCc
Confidence            345556677888887753   5788889888888876655443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.73  E-value=6.3e-06  Score=54.62  Aligned_cols=23  Identities=43%  Similarity=0.606  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.5e-06  Score=53.83  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.63  E-value=1.4e-05  Score=54.14  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -+.++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.60  E-value=1.7e-05  Score=53.61  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.6e-05  Score=53.18  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.57  E-value=1.9e-05  Score=51.23  Aligned_cols=20  Identities=40%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |++.|+|||||||+++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.57  E-value=2.7e-05  Score=52.74  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++..|+|+|+|||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.53  E-value=2.3e-05  Score=52.56  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.5e-05  Score=52.30  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.7e-05  Score=51.36  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.9e-05  Score=51.94  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.47  E-value=2.2e-05  Score=53.04  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +++|+|.|+|||||||+.+.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.4e-05  Score=51.67  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.44  E-value=3.3e-05  Score=50.89  Aligned_cols=20  Identities=40%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|.|++||||||+.+.|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00015  Score=51.86  Aligned_cols=62  Identities=21%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----ccccceeeeEEEEEEeCCeEEEEEEEeCCCccc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES-----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER   69 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   69 (203)
                      ...-|.|+|+.++|||+|+|.|.+....-.     ...|.|+-.....+ ..+....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            455789999999999999999997653111     11223322222222 233456789999999653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=3.9e-05  Score=50.03  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=4.9e-05  Score=50.57  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +...-|+++|.|||||||+++.+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3556799999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.35  E-value=7.4e-05  Score=49.46  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-+-|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447799999999999999988864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=7.1e-05  Score=50.56  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++.|+|+|+|||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=6e-05  Score=51.48  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=8.3e-05  Score=52.12  Aligned_cols=23  Identities=30%  Similarity=0.301  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      +++|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998844

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.6e-05  Score=49.60  Aligned_cols=21  Identities=33%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .|+|.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=3.8e-05  Score=51.44  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|+||+||||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999984

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=5.8e-05  Score=49.72  Aligned_cols=22  Identities=41%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=9.5e-05  Score=49.75  Aligned_cols=25  Identities=24%  Similarity=0.153  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+-|+|.|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3556799999999999999999863

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.22  E-value=8.4e-05  Score=49.50  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999999885

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.19  E-value=0.00014  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999998744

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.19  E-value=0.00013  Score=48.29  Aligned_cols=19  Identities=21%  Similarity=0.520  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      |+++|++||||||+.+.|.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999999885

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=0.00013  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999998744

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.00013  Score=49.71  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCChHHHHHHHHhccc
Confidence            7899999999999999998844

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.17  E-value=0.00011  Score=48.42  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.17  E-value=9e-05  Score=48.62  Aligned_cols=20  Identities=40%  Similarity=0.561  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      +|+++|++||||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0001  Score=48.49  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00011  Score=49.38  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00013  Score=50.60  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            37899999999999999888744

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00014  Score=50.46  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999988743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00012  Score=48.99  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+|++||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999998743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00016  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            58999999999999999998744

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.10  E-value=0.00014  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999998753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.07  E-value=0.00019  Score=50.10  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999998854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00019  Score=51.46  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++|+|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999998744

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.07  E-value=0.00017  Score=52.85  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -+|+|.|++|||||||+++|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            358999999999999999998643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.06  E-value=0.00016  Score=49.72  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.+.|+|-|+|||||||..+.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.05  E-value=5.6e-05  Score=51.20  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      --|+|+|+|||||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.03  E-value=0.00022  Score=49.74  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999999854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.0002  Score=48.39  Aligned_cols=24  Identities=17%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..--|+|+|+|||||||+.+.|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999865

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00018  Score=48.49  Aligned_cols=20  Identities=45%  Similarity=0.689  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.01  E-value=0.00014  Score=50.38  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.99  E-value=0.00015  Score=51.44  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-|++.|+||+|||||++++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.99  E-value=0.00017  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      +++|+|++|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            68999999999999999887743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00023  Score=49.64  Aligned_cols=22  Identities=36%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|++|||||||++.+.+-.
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            7899999999999999998844

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.98  E-value=0.00024  Score=49.54  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00021  Score=48.82  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+||+|||||||++.|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.96  E-value=0.00025  Score=49.57  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00011  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00027  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      ++++|+.|||||||++.+.+-..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            68999999999999999988553

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00032  Score=47.94  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ++-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4779999999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00019  Score=49.94  Aligned_cols=21  Identities=52%  Similarity=0.743  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ++++|+.|||||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999999883

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.87  E-value=0.00027  Score=47.13  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=17.0

Q ss_pred             EE-EEEcCCCCCHHHHHHHHh
Q 028813           10 KL-LLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i-~v~G~~~sGKSsli~~l~   29 (203)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            55 457999999999999885

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00026  Score=49.35  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-.+++.|+||+||||+++.+..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.0003  Score=48.92  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.0004  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++|+|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            37899999999999999998744

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.81  E-value=0.0004  Score=48.98  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028813           11 LLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.80  E-value=0.0002  Score=50.06  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999999854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.0007  Score=43.91  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|++-|+-|||||||++.+..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHh
Confidence            4588999999999999999884

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.00036  Score=46.97  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CCceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            4 EYDYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         4 ~~~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +..+.+-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0005  Score=46.25  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-+++++|+||+|||++++.|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345789999999999999988875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.00057  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++-|+|.|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357799999999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00059  Score=48.38  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-++++||+||+|||++++.|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345789999999999999998874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00057  Score=47.27  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.60  E-value=0.00089  Score=46.93  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-.|++.|+||+|||++++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.0006  Score=49.53  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++++||||+|||.|.+++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4589999999999999999875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00074  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|+||+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0012  Score=47.80  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHHh
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l~   29 (203)
                      ....+-|+|.|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            4567889999999999999988875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.46  E-value=0.00077  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -+++.|+||+|||++++++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            355679999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.0009  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.43  E-value=0.0011  Score=45.26  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +..-|.+.|.||||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00087  Score=45.79  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      =|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999998864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00086  Score=46.80  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ...+++.|++|+||||+++.+..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.00099  Score=46.70  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      --|++.|+||+|||++++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.32  E-value=0.00099  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0011  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34899999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.24  E-value=0.0013  Score=44.49  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0013  Score=45.22  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3589999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0013  Score=46.28  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.+++.|+||+|||++++++..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3589999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0014  Score=46.20  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -.+++.|+||+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            45999999999999999998863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0015  Score=44.81  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..+++.|++|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999998753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0015  Score=49.80  Aligned_cols=21  Identities=43%  Similarity=0.719  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028813            9 FKLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~   29 (203)
                      -+|+++||+|||||-|.++|.
T Consensus        50 sNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999985

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0028  Score=43.00  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-|+|+|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4588999999999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0018  Score=45.83  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      --|++.|++|+|||+|++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            45999999999999999999763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0039  Score=44.43  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             CceeeEEEEEcCCCCCHHHHHHHH
Q 028813            5 YDYLFKLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus         5 ~~~~~~i~v~G~~~sGKSsli~~l   28 (203)
                      ....+=|+|-|.+|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            345788999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0026  Score=43.11  Aligned_cols=20  Identities=20%  Similarity=0.327  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.79  E-value=0.0032  Score=42.62  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0034  Score=42.70  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0022  Score=47.89  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=18.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028813            8 LFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         8 ~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-++++||+||+|||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34579999999999999976653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0036  Score=42.17  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDSY   33 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~~   33 (203)
                      -+.|.|+||+|||+|...|..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999876443

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.53  E-value=0.0038  Score=45.52  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +..++|.|=|..||||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0029  Score=43.59  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.45  E-value=0.0035  Score=46.34  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      --+++.||||+|||+|...+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0046  Score=42.55  Aligned_cols=23  Identities=30%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++|.|+||+|||+|+-.+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999987644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.39  E-value=0.0024  Score=46.63  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      .+++.|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            48999999999999999885

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0067  Score=43.90  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -.++++|++|+|||.|.+.|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999999763

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.27  E-value=0.006  Score=44.34  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            568999999999999999998864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.26  E-value=0.0054  Score=40.37  Aligned_cols=23  Identities=43%  Similarity=0.644  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      =|++.|++|+||||+.-.|..+.
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            38999999999999999888643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.25  E-value=0.0061  Score=40.14  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      =|++.|++|+||||+.-.|..+.
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            47999999999999999988643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.24  E-value=0.0076  Score=43.91  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      ..++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.20  E-value=0.0046  Score=45.74  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ..-+++++||+|+|||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999999853

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.18  E-value=0.0027  Score=45.31  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.17  E-value=0.0056  Score=42.35  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++|.|+||+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0057  Score=42.19  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0011  Score=44.50  Aligned_cols=18  Identities=39%  Similarity=0.621  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028813           12 LLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        12 ~v~G~~~sGKSsli~~l~   29 (203)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999985

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.05  E-value=0.0061  Score=45.69  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|.|++||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.0052  Score=44.01  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=16.4

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028813           11 LLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l   28 (203)
                      -+++|+.||||||+++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            378999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.82  E-value=0.0082  Score=41.30  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|.|+||+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999888754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.78  E-value=0.0084  Score=42.48  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028813            9 FKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      .-|+|.|..|.|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.74  E-value=0.0089  Score=39.04  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      =|++.|++|+||||+.-.|..+.
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999998887643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.71  E-value=0.0061  Score=40.91  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.=-+++.|++++|||.|+.+|..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            345689999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.0092  Score=40.55  Aligned_cols=20  Identities=20%  Similarity=0.195  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.66  E-value=0.0098  Score=43.03  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +++.|+||+|||.|.++|..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999975

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.01  Score=40.13  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +++.|++|+||||+++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.01  Score=40.94  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      +++.|++|+||||+++.+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.011  Score=40.77  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADDS   32 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~~   32 (203)
                      -++|.|+||+|||+|...+....
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.48  E-value=0.011  Score=40.59  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      -++|.|+||+|||+|...+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999998753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.40  E-value=0.012  Score=40.54  Aligned_cols=22  Identities=18%  Similarity=0.067  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|+|.|..||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999998854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.011  Score=44.06  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      -+|+|+.|||||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999973

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.07  E-value=0.016  Score=39.39  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.91  E-value=0.017  Score=39.27  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      -+.|.|+||+|||+|...+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999877653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.84  E-value=0.018  Score=40.50  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.64  E-value=0.013  Score=41.57  Aligned_cols=15  Identities=27%  Similarity=0.625  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 028813           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~v~G~~~sGKSsli   25 (203)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.021  Score=42.86  Aligned_cols=21  Identities=48%  Similarity=0.664  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .++|+|.+|+|||+++..++.
T Consensus        52 H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999887764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.33  E-value=0.019  Score=41.13  Aligned_cols=15  Identities=40%  Similarity=0.789  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 028813           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~v~G~~~sGKSsli   25 (203)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999755

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.32  E-value=0.033  Score=40.14  Aligned_cols=20  Identities=40%  Similarity=0.692  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      .++++|++|+|||.+.+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57899999999999998865

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.19  E-value=0.21  Score=31.60  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=28.0

Q ss_pred             hhhccCCcEEEEEEECCCh-----h-----hHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           75 SSYYRGAHGIIIVYDVTDQ-----E-----SFNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~-----~-----s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                      ...+.++|++|+.......     .     ....++++...+..+.+.+.-++++.|-.|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            3457889999887764421     1     123334455556665554444555556555

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.00  E-value=0.03  Score=39.36  Aligned_cols=25  Identities=20%  Similarity=0.233  Sum_probs=20.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      ++.--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3445688999999999999998875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.038  Score=33.64  Aligned_cols=24  Identities=17%  Similarity=0.175  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .=+.|.+.|..++||||+.++|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.032  Score=38.99  Aligned_cols=19  Identities=42%  Similarity=0.564  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6699999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.042  Score=38.93  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.87  E-value=0.55  Score=31.34  Aligned_cols=74  Identities=11%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCccccccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCccCCHHH
Q 028813           57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVSYET  135 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~  135 (203)
                      +.+.++|+++.-..  .....+..+|.++++...+ ..++..+.+....++.   .+.|++ +|+|+.|.... ......
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhHH
Confidence            57889999886432  2444567799999999864 5556666655555543   356655 78899986543 334333


Q ss_pred             HH
Q 028813          136 AK  137 (203)
Q Consensus       136 ~~  137 (203)
                      .+
T Consensus       185 ~~  186 (237)
T d1g3qa_         185 AE  186 (237)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.05  Score=39.90  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 028813           10 KLLLIGDSGVGKSCLLLRF   28 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l   28 (203)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3678999999999987543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.61  E-value=0.06  Score=35.33  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.13  E-value=0.091  Score=36.28  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028813            9 FKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         9 ~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .-|+|.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3489999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.099  Score=36.48  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028813           11 LLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~~   31 (203)
                      +.|.|++++|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            678999999999999777653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.72  E-value=0.85  Score=29.41  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             ceeeEEEEEcC-CCCCHHHHHHHHhcCCCCCCccccceeeeEEEEEEeCCeEEEEEEEeCCCcccc--------------
Q 028813            6 DYLFKLLLIGD-SGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------------   70 (203)
Q Consensus         6 ~~~~~i~v~G~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------------   70 (203)
                      .+.+||.|+|. .+.|-+.+. .|..+......                 ..+.++++|.+.....              
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLF-KLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHH-HHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHHHHH-HHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            46789999996 667766544 45443322111                 1245555565542110              


Q ss_pred             -------ccchhhhccCCcEEEEEEECCChh--h--------HHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028813           71 -------RTITSSYYRGAHGIIIVYDVTDQE--S--------FNNVKQWLNEIDRYASDNVNKLLVGNKCD  124 (203)
Q Consensus        71 -------~~~~~~~~~~~d~~i~v~d~~~~~--s--------~~~~~~~~~~i~~~~~~~~p~ilv~nK~D  124 (203)
                             .......+.++|++|+.-......  +        ..-++.+.+.+..+.+.+..++++.|-.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   111233467889988887654211  1        12234455556666665566667767665

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.11  Score=35.57  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.35  E-value=0.13  Score=36.13  Aligned_cols=22  Identities=36%  Similarity=0.777  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028813           10 KLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |++++|.+++|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998887643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.33  E-value=0.12  Score=35.17  Aligned_cols=19  Identities=37%  Similarity=0.499  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      ++|.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.90  E-value=0.13  Score=31.61  Aligned_cols=19  Identities=26%  Similarity=0.167  Sum_probs=15.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028813           11 LLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~   29 (203)
                      .+|.+++|+|||+++-.+.
T Consensus        11 ~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4779999999999886544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.03  E-value=0.14  Score=36.57  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 028813           12 LLIGDSGVGKSCLL   25 (203)
Q Consensus        12 ~v~G~~~sGKSsli   25 (203)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.40  E-value=0.15  Score=36.43  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 028813           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~v~G~~~sGKSsli   25 (203)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999965

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.36  E-value=0.23  Score=32.90  Aligned_cols=25  Identities=12%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028813            6 DYLFKLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus         6 ~~~~~i~v~G~~~sGKSsli~~l~~   30 (203)
                      .....+++-|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998774

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.74  E-value=0.18  Score=36.11  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 028813           11 LLLIGDSGVGKSCLL   25 (203)
Q Consensus        11 i~v~G~~~sGKSsli   25 (203)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999987

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.58  E-value=3.8  Score=27.72  Aligned_cols=88  Identities=20%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCccccccc-hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC-CCc-EEEEEeCCCCCCCccCCH
Q 028813           57 IKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVN-KLLVGNKCDLTANKVVSY  133 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p-~ilv~nK~D~~~~~~~~~  133 (203)
                      +++.++|+|+....... .......+|.++++.+. +..++..+...+..+...... +.+ .-+++|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            56889999875432221 22223457888777765 466666666666666554432 223 3467899876442    3


Q ss_pred             HHHHHHHHHhCCcEEE
Q 028813          134 ETAKAFADEIGIPFME  149 (203)
Q Consensus       134 ~~~~~~~~~~~~~~~~  149 (203)
                      +..+++....+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566677777776554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.39  E-value=3  Score=28.65  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccccccchhh-hccCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcE-EEEEeCCCCCCCccCCH
Q 028813           57 IKLQIWDTAGQERFRTITSS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDLTANKVVSY  133 (203)
Q Consensus        57 ~~~~i~D~~g~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~-ilv~nK~D~~~~~~~~~  133 (203)
                      +.+.++|+|+.......... ....+|.++++.. .+..++..+...+..+.... ..+.++ .+|.|+.+....    .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----D  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----H
Confidence            56789999875432222211 1234666666654 44555555555555554332 223443 367898864322    2


Q ss_pred             HHHHHHHHHhCCcEEE
Q 028813          134 ETAKAFADEIGIPFME  149 (203)
Q Consensus       134 ~~~~~~~~~~~~~~~~  149 (203)
                      +...++...++.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            3456666777776654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.99  E-value=0.2  Score=35.28  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            689999999999999876654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.79  E-value=0.3  Score=34.05  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.+.|++++|||+|.-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56899999999999988765

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=0.34  Score=32.01  Aligned_cols=63  Identities=16%  Similarity=0.048  Sum_probs=32.8

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEE
Q 028813           82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME  149 (203)
Q Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  149 (203)
                      +.+++|.+...... .........+...  .....-+|+|+.|....  ...+.++.+.+.++++++-
T Consensus       139 ~~v~~V~~~~~~~~-~~~~~~~~~~~~~--~~~~~gvv~N~~~~~~~--~~~~~~~~l~~~~gi~vlG  201 (224)
T d1byia_         139 LPVILVVGVKLGCI-NHAMLTAQVIQHA--GLTLAGWVANDVTPPGK--RHAEYMTTLTRMIPAPLLG  201 (224)
T ss_dssp             CCEEEEEECSTTHH-HHHHHHHHHHHHT--TCCEEEEEEECCSSCCT--THHHHHHHHHHHSSSCEEE
T ss_pred             ceeeEEEeeccchh-HHHHHHHHHHhcc--CCccEEEEEeCcCCCch--HHHHHHHHHHHHhCCCEEE
Confidence            45566666554433 2222333333332  22345677899875332  2334456666777888764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.09  E-value=0.36  Score=33.28  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028813           10 KLLLIGDSGVGKSCLLLRFA   29 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~   29 (203)
                      +|+|.|--|+||||+.-.|.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            57889999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.82  E-value=0.35  Score=33.71  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028813           11 LLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        11 i~v~G~~~sGKSsli~~l~~   30 (203)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999876664

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.39  E-value=0.81  Score=28.71  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=17.1

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhc
Q 028813            7 YLFKLLLIGD-SGVGKSCLLLRFAD   30 (203)
Q Consensus         7 ~~~~i~v~G~-~~sGKSsli~~l~~   30 (203)
                      +++||.|+|. .++|.+.... |..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~-l~~   25 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYS-IGN   25 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHH-HHT
T ss_pred             CceEEEEECCCCHHHHHHHHH-HHH
Confidence            4589999995 7899886654 443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.05  E-value=0.39  Score=29.81  Aligned_cols=18  Identities=28%  Similarity=0.480  Sum_probs=14.2

Q ss_pred             EEEcCCCCCHHH-HHHHHh
Q 028813           12 LLIGDSGVGKSC-LLLRFA   29 (203)
Q Consensus        12 ~v~G~~~sGKSs-li~~l~   29 (203)
                      +++|+=.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 666543

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.81  E-value=4  Score=25.85  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccCCHHHHHHHHHHhCCcEEEee
Q 028813           91 TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS  151 (203)
Q Consensus        91 ~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
                      +|+..++...+..  +........|+|+++.......    ..+++.+++...++|++.+.
T Consensus         3 sd~~~l~~~v~~~--~~~l~~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDET--LKFIANRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHH--HHHHTTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHH--HHHHHcCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            4555554443322  2333445789999998886533    35788999999999988653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.53  E-value=0.86  Score=26.13  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             CCCCCceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028813            1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD   31 (203)
Q Consensus         1 m~~~~~~~~~i~v~G~~~sGKSsli~~l~~~   31 (203)
                      |-|+-+..-+|-|+|-.|+|-|.|.+.|...
T Consensus         1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             CCCCCTTCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             CCccchhCCEEEEEEECHHHHHHHHHHHHhC
Confidence            5566677789999999999999999988753

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.29  E-value=0.27  Score=34.46  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028813           10 KLLLIGDSGVGKSCLLLRFAD   30 (203)
Q Consensus        10 ~i~v~G~~~sGKSsli~~l~~   30 (203)
                      |++|+|.+|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            578999999999999876543