Citrus Sinensis ID: 028814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFSRNSNGTACSLHV
Secondary Structure (PSIPRED)
cccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccHHcHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEccccccccccEEEccccccEEEccc
Coil and Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSwlakqplpvEAAIVTATTAINGAAIGAFLGVMtqdltsslptpppqsslnpdavapfqqvqavaggplvqARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLvsgmgganpavnAFTSGLLFAIFQGCSFKVSADHFEEglnyfsrnsngtacslhv
Flexible Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLnyfsrnsngtacslhv
Low Complexity Region (SEG)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEaaivtattaingaaigaFLGVMtqdltsslptpppqsslNPDavapfqqvqavaGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQssvvaafgsgaafslvsgMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFSRNSNGTACSLHV
Disordered region (IsUnstruct)
************QLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQ**********************FQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFS************
Disordered Region (DISOPRED)
******************************NGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLT********************************QARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFE**LNYFSRNSNGTACSLH*
Disordered Region (DISEMBL)
********MSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLT************NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFSRNSNGTACSLHV
Disordered Region (DISPRO)
******KVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFSRNSNGTACSL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHFEEGLNYFSRNSNGTACSLHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224118566	262	predicted protein [Populus trichocarpa]	0.802	0.622	0.711	3e-61
449456433	253	PREDICTED: uncharacterized protein LOC10	0.857	0.687	0.666	6e-59
449497426	253	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.857	0.687	0.666	7e-59
356509122	260	PREDICTED: uncharacterized protein LOC10	0.876	0.684	0.623	3e-58
224134921	260	predicted protein [Populus trichocarpa]	0.921	0.719	0.619	3e-58
255557172	261	protein translocase, putative [Ricinus c	0.802	0.624	0.687	4e-58
356516192	260	PREDICTED: uncharacterized protein LOC10	0.876	0.684	0.612	8e-58
225455153	254	PREDICTED: uncharacterized protein LOC10	0.857	0.685	0.657	1e-54
357464317	263	SAM domain family protein [Medicago trun	0.876	0.676	0.613	2e-52
226494803	270	SAM domain family protein [Zea mays] gi|	0.758	0.570	0.577	4e-46

>gi|224118566|ref|XP_002317852.1| predicted protein [Populus trichocarpa] gi|222858525|gb|EEE96072.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 138/163 (84%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           Q  IK VQFK KELE+G+KSWL+KQ LPVEAA+VTAT  + GAAIGA +G +T D++SS+
Sbjct: 19  QDPIKLVQFKFKELEDGFKSWLSKQSLPVEAAVVTATGGVQGAAIGAIMGTLTPDISSSM 78

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPPQ+SLNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+C+MKRLRGKED+QSS
Sbjct: 79  PTPPPQASLNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIACIMKRLRGKEDVQSS 138

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           +VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 139 MVAAFGSGAMFSLVSGMGGPNLATNAITSGLFFALVQGGLFKL 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456433|ref|XP_004145954.1| PREDICTED: uncharacterized protein LOC101208652 [Cucumis sativus]

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 6/180 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKL 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497426|ref|XP_004160398.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208652 [Cucumis sativus]

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 6/180 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLXFALVQGGLFKL 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509122|ref|XP_003523301.1| PREDICTED: uncharacterized protein LOC100775460 [Glycine max]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 140/178 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + KELE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVTSQSQNPIEQIQARFKELETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLVQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F++
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFQI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134921|ref|XP_002321938.1| predicted protein [Populus trichocarpa] gi|222868934|gb|EEF06065.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 150/192 (78%), Gaps = 5/192 (2%)

Query: 2   EKGNEKVMSLVQLP-QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ++G + V+    LP Q  +K VQFK KELE+G+KSWL+KQ L VEAA+VTAT+ + GAAI
Sbjct: 3   QQGKQGVIVSKLLPNQDPVKFVQFKYKELEDGFKSWLSKQSLLVEAAVVTATSGVQGAAI 62

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GA +G +T D++SS+PTPP Q++LNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+
Sbjct: 63  GAIMGTITPDISSSMPTPP-QAALNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIA 121

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSA 180
           C+MKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK+  
Sbjct: 122 CIMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNNATNAITSGLFFALVQGGLFKLGE 181

Query: 181 DHFE---EGLNY 189
              +   E L+Y
Sbjct: 182 KFSQPPTEDLHY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557172|ref|XP_002519617.1| protein translocase, putative [Ricinus communis] gi|223541207|gb|EEF42762.1| protein translocase, putative [Ricinus communis]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/163 (68%), Positives = 137/163 (84%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           +  I+ +Q K+KELENG+KSWL+KQ L VEAA+VTAT+A  GAAIGA +G +  D++SSL
Sbjct: 17  ENPIQQLQAKMKELENGFKSWLSKQSLAVEAAVVTATSATQGAAIGAIMGTLAPDISSSL 76

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPP ++LNP A+A  +Q QA++GGPLVQARNFAV+TGVNAGIS VMKRLRGKED+QSS
Sbjct: 77  PTPPPDAALNPQAMASIKQAQALSGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSS 136

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           +VAAFGSGA FSLVSG+GG NPA NA TSGL FA+ QG  F++
Sbjct: 137 MVAAFGSGAMFSLVSGVGGPNPAANAITSGLFFALVQGGLFQL 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516192|ref|XP_003526780.1| PREDICTED: uncharacterized protein LOC100813121 [Glycine max]

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 140/178 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + K+LE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVASQSQNPIEQIQARFKDLETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPL+QARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLIQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F++
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNQATNALTSGLFFALVQGGLFQI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455153|ref|XP_002267996.1| PREDICTED: uncharacterized protein LOC100267522 [Vitis vinifera]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 145/178 (81%), Gaps = 4/178 (2%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           M++G + VM   Q P   I  +Q + K+LENG+++WLAKQ LPVEAA+VTAT+A  GAAI
Sbjct: 1   MDEGKQGVMVAAQNP---IAQLQARFKDLENGFRAWLAKQSLPVEAAVVTATSAAQGAAI 57

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D TS++PTPP Q++L+P A+A F+Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 58  GAFMGTLTNDATSAIPTPP-QANLSPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 116

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
           CVMKR+RGKED+QSS+VAAFGSGA FSLVSGMGG N A N  TSGL FA+ QG  F++
Sbjct: 117 CVMKRIRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNVITSGLFFALIQGGIFQI 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464317|ref|XP_003602440.1| SAM domain family protein [Medicago truncatula] gi|355491488|gb|AES72691.1| SAM domain family protein [Medicago truncatula]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 139/181 (76%), Gaps = 3/181 (1%)

Query: 1   MEKGNEKVMSLVQLPQK---AIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAING 57
           ME+G +  M L  LPQ+    I  +Q + K LENG+K WL+KQ + VEAA+VT T A  G
Sbjct: 1   MEQGKQGAMVLKGLPQQLQNPIDQIQTRYKHLENGFKLWLSKQSIAVEAAVVTTTGAAQG 60

Query: 58  AAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA 117
           AAIGAFLG +T D +S+ PTPPP +SLNP A+A  QQ QA+AGGPL+QARNFA++TGV+A
Sbjct: 61  AAIGAFLGTLTGDASSAFPTPPPNASLNPQAMASLQQAQALAGGPLIQARNFAILTGVSA 120

Query: 118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           GI+CV++RLRGKED++SS+ AAFGSG  FSLVSGMGG N   NA TSGL FA+FQG  F+
Sbjct: 121 GITCVLRRLRGKEDVKSSMAAAFGSGVTFSLVSGMGGPNKVGNAVTSGLFFALFQGGVFQ 180

Query: 178 V 178
           +
Sbjct: 181 I 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226494803|ref|NP_001146865.1| SAM domain family protein [Zea mays] gi|195604410|gb|ACG24035.1| SAM domain family protein [Zea mays] gi|413922575|gb|AFW62507.1| SAM domain protein [Zea mays]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 118/154 (76%)

Query: 25  KLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSL 84
           ++K +E G+++W+AKQP+ +EAA+ TA  A+ G A+G  +G +T D  S  P P P S+ 
Sbjct: 39  RVKAIEAGFRAWMAKQPIHIEAAVSTAVGAVQGGALGGLMGSLTADGGSPFPIPQPPSNA 98

Query: 85  NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGA 144
           N DA+A F+Q QA+A GPLVQARNFAV+TG NAGISCVM+RLRG+ED+Q S+ AAFGSGA
Sbjct: 99  NSDAMASFKQAQALAAGPLVQARNFAVMTGANAGISCVMRRLRGQEDIQGSMTAAFGSGA 158

Query: 145 AFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV 178
            FS+VSGMG  NP +NA T+G+ FA+FQG  F +
Sbjct: 159 LFSIVSGMGTPNPVLNAITTGVAFAVFQGGFFMI 192

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2153959	259	AT5G24650 [Arabidopsis thalian	0.798	0.625	0.380	1.8e-23
TAIR|locus:2114723	261	AT3G49560 "AT3G49560" [Arabido	0.788	0.613	0.337	4e-19

TAIR|locus:2153959 AT5G24650 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/171 (38%), Positives = 81/171 (47%)

Query:     8 VMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVM 67
             VMSL++  Q  I+  Q K KE+E G+KSWL+KQ LPVE                  +G +
Sbjct:    16 VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query:    68 XXXXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLR 127
                              +P             GGPLVQARNFA ITGVNAGI+CVMKR+R
Sbjct:    76 SPEMPQAGI--------DPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIR 127

Query:   128 GKEDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKV 178
             GKEDL+                   G     +NA T+   FA+FQG  FK+
Sbjct:   128 GKEDLESAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKL 177

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2114723 AT3G49560 "AT3G49560" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 57/169 (33%), Positives = 74/169 (43%)

Query:    10 SLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVMXX 69
             SL    Q  I+  Q K KE+E  +K+WL+KQ +PVE                  +G +  
Sbjct:    23 SLFNDQQNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSP 82

Query:    70 XXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLRGK 129
                            +P             GGP VQARNFA ITGVNAGI+ VMKR+RGK
Sbjct:    83 EMPQAGV--------DPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGK 134

Query:   130 EDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFKV 178
             ED++                   G     +NA T+   FA+FQG  FK+
Sbjct:   135 EDIESAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKL 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       139   0.00091  102 3  11 22  0.43    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.53u 0.10s 10.63t   Elapsed:  00:00:00
  Total cpu time:  10.53u 0.10s 10.63t   Elapsed:  00:00:00
  Start:  Mon May 20 19:18:19 2013   End:  Mon May 20 19:18:19 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0031027502 hypothetical protein (263 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	3e-13
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	2e-04
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	2e-04
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	5e-04

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 43  PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
           P      T    + GA  G F G     L ++L + P +  LN         + A     
Sbjct: 3   PERIVYDTGGGFLMGAVYGGFFGAP-HGLVNALRSGPLKLRLN-------GVLNATGRRG 54

Query: 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAF 162
                NFAV  G+ +GI C +++LRGKED  +S++A   +GA   L  G   A  AV A 
Sbjct: 55  PSHGNNFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAA--AVGAA 112

Query: 163 TSGLLFAIF 171
                 A  
Sbjct: 113 VGAAFSAAI 121

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 50  TATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNF 109
           T T  + G AIGA  G+    L  +   P  +  LN       ++      GP       
Sbjct: 38  TGTCYLTGLAIGALNGLR-LGLKETQSMPWTKLRLNQILNMVTRR------GPFW-GNTL 89

Query: 110 AVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155
            ++  V  GI+ +++  RGK D  +SV A   +GA +    G+ G 
Sbjct: 90  GILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGM 135

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
           NFA+  G+ +   C ++ LRGKED  +++ + F +G   ++  G   A    NA   G+L
Sbjct: 65  NFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSA--VRNAIFGGIL 122

Query: 168 FAIFQGCS 175
             I +  S
Sbjct: 123 LGIIELVS 130

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
           NFAV  G+ + I C +  +R KED  +S+++ F +GAA ++  G   M G+     A   
Sbjct: 63  NFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGS-----AILG 117

Query: 165 GLLFAIFQG 173
             + A+ +G
Sbjct: 118 ACILAVIEG 126

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.96
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.91
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.9
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.89
PTZ00236	164	mitochondrial import inner membrane translocase su	99.86
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.79
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.73
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.69
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.96
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	96.86
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	92.95
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	92.39
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	81.1

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-30  Score=213.05  Aligned_cols=123  Identities=20%  Similarity=0.311  Sum_probs=109.1

Q ss_pred             hhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCC-CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814           44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP-QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC  121 (203)
Q Consensus        44 ~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec  121 (203)
                      .++|. |+++++|+|+++|+.||+|.++++.+-+.|.+ ..++++|+   +|+   |+.+++++++|||++|++|+++||
T Consensus        39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~Ec  112 (168)
T KOG3225|consen   39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVEC  112 (168)
T ss_pred             hcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHHH
Confidence            34888 99999999999999999999999976222322 23456665   677   899999999999999999999999


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 028814          122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKV  178 (203)
Q Consensus       122 ~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~  178 (203)
                      ++|++|.|+||+|++++||+||+.++.|+|      |++++.||++|++||++|++.
T Consensus       113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~raG------p~a~~~G~agfa~fS~~id~y  163 (168)
T KOG3225|consen  113 LIESFRAKSDWYNGAIAGCVTGGSLGYRAG------PKAAAIGCAGFAAFSAAIDKY  163 (168)
T ss_pred             HHHHHHhhhchhcceeeeeeeccchhhccc------chhhhhchhHHHHHHHHHHHh
Confidence            999999999999999999999999999999      999999999999999999654

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.91  E-value=9.4e-25  Score=178.09  Aligned_cols=136  Identities=21%  Similarity=0.146  Sum_probs=113.7

Q ss_pred             HHHHhHHHHHHHHh-----cCCchhhh-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhh
Q 028814           25 KLKELENGYKSWLA-----KQPLPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAV   98 (203)
Q Consensus        25 ~~~~l~~~~~~~~~-----~q~~~~e~-cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~   98 (203)
                      +.|+|.++.++++-     ++..+.|+ |.++..++++|.++|.++|++.+..+.+    + -.+.++++...+++   +
T Consensus         7 ~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln~---~   78 (149)
T TIGR00983         7 DPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILNM---V   78 (149)
T ss_pred             CcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHHH---H
Confidence            45677666666522     33444554 4599999999999999999999887532    1 12357888999987   7


Q ss_pred             cCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHH
Q 028814           99 AGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC  174 (203)
Q Consensus        99 ~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga  174 (203)
                      +.+..+++++||+++++|+++||.++++|+|||+||+++||++||+++++++|      |++++.+|++.+++.++
T Consensus        79 ~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G------~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983        79 TRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRG------LRGMARSGALGATAAGV  148 (149)
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccC------hHHHHHHhHHHHHHhhc
Confidence            78889999999999999999999999999999999999999999999999999      99999999998887664

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.90  E-value=1e-23  Score=175.29  Aligned_cols=115  Identities=23%  Similarity=0.254  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhccc
Q 028814           51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKE  130 (203)
Q Consensus        51 ~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~  130 (203)
                      ..++.+|.+.|.+++++.+..+.    |.     .++++..++.   ++.+.++++++||++|++|+++||+++++|+||
T Consensus        18 G~af~~G~~~G~~~g~~~G~rns----p~-----g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~Ke   85 (170)
T TIGR00980        18 GGAFAMGTIGGSIFQAFKGFRNS----PK-----GEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKE   85 (170)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcC----Cc-----cchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34455555555666655543322    11     2356677765   667889999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814          131 DLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF  183 (203)
Q Consensus       131 D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~  183 (203)
                      |+||+++|||+||++|++++|      +++++.+|+++++|.++|+.+|..+.
T Consensus        86 D~~NsiiAG~~TGa~l~~r~G------~~a~~~~aa~gg~~la~ie~~g~~~~  132 (170)
T TIGR00980        86 DPWNSIISGFLTGAALAVRGG------PRAMRGSAILGACILAVIEGVGLVLT  132 (170)
T ss_pred             chHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999      99999999999999999999987774

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.89  E-value=1.8e-22  Score=157.53  Aligned_cols=124  Identities=27%  Similarity=0.406  Sum_probs=103.0

Q ss_pred             hhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHH
Q 028814           45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM  123 (203)
Q Consensus        45 e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~i  123 (203)
                      |.++ .++.+++.|.++|.+.+.......     ++...+.++++...++.   ++.+...++.+||.++++|+++||.+
T Consensus         4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l   75 (128)
T PF02466_consen    4 ERILDSTGKGFVAGAVFGGFIGAISAFTR-----PPRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECAL   75 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHH
Confidence            3444 777777777777777777754211     11113356688888887   77777889999999999999999999


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 028814          124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADH  182 (203)
Q Consensus       124 e~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~  182 (203)
                      +++|+|||+||+++||++||++++.+.|      ++.++.+++++++++.++++.++++
T Consensus        76 ~~~R~k~D~~N~~~aG~~aGa~~~~~~g------~~~~~~~~~~~a~~~~~~~~~~~~~  128 (128)
T PF02466_consen   76 ERLRGKDDPWNSAIAGAAAGAVLGLRSG------PRGMASGAALGAAFAAAVEYYGRMP  128 (128)
T ss_pred             HHhhcccccchhHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999      9999999999999999999998764

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.86  E-value=3.1e-21  Score=159.61  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhccc
Q 028814           51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKE  130 (203)
Q Consensus        51 ~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~  130 (203)
                      ..++.+|.+.|.+++++.+..+.    |+     .+++...++.   ++.+.++++++||++|++|+++||+++++|+||
T Consensus        20 G~af~~G~vgG~~~~~~~G~rns----p~-----g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~   87 (164)
T PTZ00236         20 GGAFSMGCIGGFIWHFLKGMRNS----PK-----GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKE   87 (164)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhC----CC-----cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34455555555555555544322    11     3345566665   666888999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhc
Q 028814          131 DLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSA  180 (203)
Q Consensus       131 D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~  180 (203)
                      |+||+++|||+||++|+++.|      +++++.+++..+++.++|+.++.
T Consensus        88 D~~Nsi~AG~~TGa~l~~r~G------~~~~~~~a~~Gg~~~~~ie~~~i  131 (164)
T PTZ00236         88 DHWNAIASGFFTGGVLAIRGG------WRSAVRNAIFGGILLGIIELVSI  131 (164)
T ss_pred             chHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999      88666655555555555554443

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=9.7e-21  Score=157.78  Aligned_cols=119  Identities=18%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             chhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHH
Q 028814           42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS  120 (203)
Q Consensus        42 ~~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~e  120 (203)
                      ..+++|- +.+++.+.|.++.++.|...+....             +....++.   ...+....|++||+||++||.+|
T Consensus        12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~-------------r~~gg~~a---v~~~ap~~ggsFAvwgglfSt~d   75 (183)
T KOG1652|consen   12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-------------RLVGGISA---VKMRAPQSGGSFAVWGGLFSTVD   75 (183)
T ss_pred             eeeccccchhhhcccccceeeeeeeeecCCccc-------------ccccchhh---hhccCcccccceeeeechhhHHH
Confidence            4578887 8888888888888888877654321             11222221   22355679999999999999999


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 028814          121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADH  182 (203)
Q Consensus       121 c~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~  182 (203)
                      |++..+|+|||+||++++|++||++|+.+.|      +++++.+++.|+++.+.++-++..+
T Consensus        76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g------~~a~~~sa~~~g~~lamieg~g~~~  131 (183)
T KOG1652|consen   76 CALVAIRKKEDPWNSIVSGAATGGLLAARGG------PKAMLTSAITGGLLLAMIEGLGIQV  131 (183)
T ss_pred             HHHHHHhcccchHHHHHHHhhccceeecccc------HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999999      9999999999999999999988766

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.9e-19  Score=149.72  Aligned_cols=155  Identities=16%  Similarity=0.158  Sum_probs=125.9

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHhcCCchhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCC---------------
Q 028814           17 KAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP---------------   80 (203)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~q~~~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~---------------   80 (203)
                      ++-+.+... +.=+.+.+..........++|+ +++++.+.|+.+|...+.++.++.+..+..++               
T Consensus        17 ~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~   95 (191)
T COG5596          17 NAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFST   95 (191)
T ss_pred             CcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeec
Confidence            344444443 3334455556666666778888 99999999999999999998887752222111               


Q ss_pred             --CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCch
Q 028814           81 --QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPA  158 (203)
Q Consensus        81 --~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~  158 (203)
                        ..+.++|++.++++   +..+.+..++|||++|..|++.||+|+.+|+|||+.|++.+|+.||+.+..+.|      +
T Consensus        96 i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g------~  166 (191)
T COG5596          96 IDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG------P  166 (191)
T ss_pred             cccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc------c
Confidence              12458899999998   788999999999999999999999999999999999999999999999999999      9


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Q 028814          159 VNAFTSGLLFAIFQGCSFKVSAD  181 (203)
Q Consensus       159 ~aa~~gga~fA~fsga~~~~g~~  181 (203)
                      +++..++++|++|++.+....++
T Consensus       167 qa~~~~~a~~aa~s~~~~~~~~~  189 (191)
T COG5596         167 QAMPMGGAGFAAFSAGITLAMKS  189 (191)
T ss_pred             cccccCccchhhhhhhHHhhhhc
Confidence            99999999999999999876654

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.8e-17  Score=139.95  Aligned_cols=150  Identities=19%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             CCchhhhHHHHHHH--HHh---HHHHHHHHh-----cCCchhhh-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 028814           13 QLPQKAIKDVQFKL--KEL---ENGYKSWLA-----KQPLPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQ   81 (203)
Q Consensus        13 ~~~~~~~~~~~~~~--~~l---~~~~~~~~~-----~q~~~~e~-cv~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~   81 (203)
                      .-|-||++++++.+  ++|   ++|.+-.+.     +..-+.|+ |+.|..+|+.|+++|.+.|++....+.+    + .
T Consensus        33 ~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e----~-~  107 (206)
T KOG3324|consen   33 PRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTE----N-G  107 (206)
T ss_pred             ccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCC----C-C
Confidence            34558899998877  543   333322222     12223344 5599999999999999999999876542    1 1


Q ss_pred             CCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHH
Q 028814           82 SSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNA  161 (203)
Q Consensus        82 ~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa  161 (203)
                      .+.++++.++++.   ..++...++++.++++.+|+.+|..|+..|+|||++|+++||++||+++....|      ++++
T Consensus       108 ~~~Klr~nrILN~---~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~G------lr~~  178 (206)
T KOG3324|consen  108 ASGKLRLNRILNS---VTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRG------LRAA  178 (206)
T ss_pred             CccchhHHHHhhh---ccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCC------chHH
Confidence            3357788888776   344555799999999999999999999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028814          162 FTSGLLFAIFQGCSF  176 (203)
Q Consensus       162 ~~gga~fA~fsga~~  176 (203)
                      ..+++..+...++..
T Consensus       179 av~ga~g~~aa~aw~  193 (206)
T KOG3324|consen  179 AVAGAVGGTAAAAWT  193 (206)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998888877776663

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=7.9e-05  Score=65.57  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             hcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcC
Q 028814           98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG  151 (203)
Q Consensus        98 ~~~~~~~~a~~fa~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G  151 (203)
                      +.++.+.+|-..|++.+.|-++...+..+|+|+|.||=+++|.+||+++.+.-|
T Consensus       127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g  180 (270)
T KOG4608|consen  127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG  180 (270)
T ss_pred             HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence            345667778888999999999999999999999999999999999999988766

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00012  Score=62.06  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             cHHHHHHHH-HHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHH---------HHHHHHHH
Q 028814          102 PLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAIF  171 (203)
Q Consensus       102 ~~~~a~~fa-~~g~~ysg~ec~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~---------gga~fA~f  171 (203)
                      ....+.||| ++|++++.+.|+.+++|.|.|.||....|+.||..++.....  .+...+.|.         +++.+++|
T Consensus        78 ~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~~  155 (191)
T COG5596          78 VHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGAF  155 (191)
T ss_pred             ccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhhh
Confidence            345788899 999999999999999999999999999999999999987652  111333333         55666666


Q ss_pred             HHHHHHh
Q 028814          172 QGCSFKV  178 (203)
Q Consensus       172 sga~~~~  178 (203)
                      .|+..+.
T Consensus       156 TGa~~~~  162 (191)
T COG5596         156 TGAALAS  162 (191)
T ss_pred             hhHHHHh
Confidence            6665543

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=92.95  E-value=1.2  Score=37.45  Aligned_cols=123  Identities=11%  Similarity=0.035  Sum_probs=91.3

Q ss_pred             hhhhHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 028814           43 PVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC  121 (203)
Q Consensus        43 ~~e~cv-~t~~g~v~G~~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~~fa~~g~~ysg~ec  121 (203)
                      +.++|. ...++.+.|++.|++-|+........+         +-.+..+.+++.+++   ...+.--++..++...++.
T Consensus        13 ~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl---------~g~l~av~~rap~~g---~~Fav~g~lys~~ec~i~~   80 (170)
T TIGR00980        13 ILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL---------VGAMRAIKTRAPVLG---GNFAVWGGLFSTIDCAVVA   80 (170)
T ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh---------hHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence            457777 778888888888888888776454321         222233444433333   3677777888899999998


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhhcccc
Q 028814          122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKVSADHF  183 (203)
Q Consensus       122 ~ie~~Rgk~D~~Ns~~aG~~tGavl~~~~G~~~~~~~~aa~~gga~fA~fsga~~~~g~~~~  183 (203)
                      .-++-=-.+-+.-..+.|.+-++-=+.+.-      ..+++.+++++++|.++-..+.+...
T Consensus        81 ~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~  136 (170)
T TIGR00980        81 IRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA  136 (170)
T ss_pred             HhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            877766688899999999998887777776      88999999999999998777766543

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=92.39  E-value=1.2  Score=34.24  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             hHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 028814           46 AAI-VTATTAINGAAIGAFLGVMTQDLT   72 (203)
Q Consensus        46 ~cv-~t~~g~v~G~~lG~~~G~~~~~~~   72 (203)
                      +|. ++..+.+.|+++|.++|.+....+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~   28 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAIS   28 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477 889999999999999999998864

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=81.10  E-value=1.5  Score=31.64  Aligned_cols=27  Identities=15%  Similarity=0.315  Sum_probs=19.0

Q ss_pred             hHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 028814           46 AAI-VTATTAINGAAIGAFLGVMTQDLT   72 (203)
Q Consensus        46 ~cv-~t~~g~v~G~~lG~~~G~~~~~~~   72 (203)
                      +|+ |--++..+|+.+|..+|++....+
T Consensus         2 sc~~kikmG~~MG~~VG~~~G~l~G~~~   29 (67)
T PF10247_consen    2 SCFDKIKMGFMMGGAVGGAFGALFGTFS   29 (67)
T ss_pred             cHHHHHHHHHHHhhHHHhhhhhhhhhHH
Confidence            576 666777777777777777776554

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAK--------QPLPVEAA--IVT 50
            +   + ++S+ +     + +  F  K++++  KS L+K            V     +  
Sbjct: 14  HQYQYKDILSVFE--DAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 51  ATTAINGAAIGAFLG-VMTQD---LTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQA 106
              +     +  F+  V+  +   L S + T   Q S+        +Q   +     V A
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFA 127

Query: 107 RNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGG------ANPAVN 160
           +       V+        RL+    L+ +++      A   L+ G+ G      A     
Sbjct: 128 KYN-----VS--------RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 161 A--FTSGLLFAIF 171
           +      + F IF
Sbjct: 173 SYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00