Citrus Sinensis ID: 028827

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK
ccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccEEEccccccccEEEcHHHHHHHcccHHHHHHHHHHHHccccEEEcccccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHccc
ccHHHHHHHHHHHHHHHHHHHHHHHEEEEHcccccccHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHccccHEEEEccccccEEEEEcccccccEEEccHHHcccccccHHHHHHHHHHHccccEEEEEEcEccHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHccc
MNYSDLCMQYVASGIDLLEKLINVHVCRFqmaaepvnlNEFQELARLALPKMYYdfyaggaedehTLKENVEAFhritfrprilvdvsriDLSTTildykisapiiiaptalhklanpegeVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVltadtprlgrreadiknk
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFhritfrprilvdvsRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRaerngfkalvltadtprlgrreadiknk
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK
****DLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA***************
*******MQY***********************EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREAD****
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q9LJH5 363 Peroxisomal (S)-2-hydroxy yes no 0.827 0.462 0.732 2e-69
B8B8K5 366 Peroxisomal (S)-2-hydroxy N/A no 0.832 0.461 0.710 3e-69
Q8H3I4 366 Peroxisomal (S)-2-hydroxy yes no 0.832 0.461 0.710 3e-69
Q24JJ8 363 Peroxisomal (S)-2-hydroxy no no 0.827 0.462 0.732 4e-68
O49506 368 Peroxisomal (S)-2-hydroxy no no 0.837 0.461 0.588 2e-57
P05414 369 Peroxisomal (S)-2-hydroxy N/A no 0.837 0.460 0.629 7e-57
Q10CE4 369 Peroxisomal (S)-2-hydroxy no no 0.842 0.463 0.625 9e-57
B8AKX6 369 Peroxisomal (S)-2-hydroxy N/A no 0.842 0.463 0.625 9e-57
Q6YT73 369 Peroxisomal (S)-2-hydroxy no no 0.842 0.463 0.619 1e-56
B8B7C5 369 Peroxisomal (S)-2-hydroxy N/A no 0.842 0.463 0.619 1e-56
>sp|Q9LJH5|GLO4_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 152/168 (90%)

Query: 36  VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
           VN++EFQELA+ ALPKMYYDFY GGAED+HTL ENV+AF RI FRPR+LVDVS ID+ST+
Sbjct: 5   VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIMFRPRVLVDVSNIDMSTS 64

Query: 96  ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
           +L Y ISAPI+IAPTA+HKLA+P+GE+ATA+AAA+CNTIM++SF S+ +IEEVA+SCNAV
Sbjct: 65  MLGYPISAPIMIAPTAMHKLAHPKGEIATAKAAAACNTIMIVSFMSTCTIEEVASSCNAV 124

Query: 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
           RF Q+YV+K+RD+ A +V+RAE+ GFKA+VLT D PRLGRREADIKNK
Sbjct: 125 RFLQIYVYKRRDVTAQIVKRAEKAGFKAIVLTVDVPRLGRREADIKNK 172

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|B8B8K5|GLO4_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Oryza sativa subsp. indica GN=GLO4 PE=2 SV=2 Back     alignment and function description
>sp|Q8H3I4|GLO4_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Oryza sativa subsp. japonica GN=GLO4 PE=2 SV=2 Back     alignment and function description
>sp|Q24JJ8|GLO3_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Arabidopsis thaliana GN=GLO3 PE=2 SV=1 Back     alignment and function description
>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 Back     alignment and function description
>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 Back     alignment and function description
>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 Back     alignment and function description
>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
255576607 364 (S)-2-hydroxy-acid oxidase, putative [Ri 0.852 0.475 0.820 9e-79
147789144 364 hypothetical protein VITISV_031318 [Viti 0.852 0.475 0.809 1e-77
225442054 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.852 0.475 0.803 3e-77
225442052 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.852 0.475 0.803 8e-76
147789143 364 hypothetical protein VITISV_031317 [Viti 0.852 0.475 0.803 2e-75
255576595 364 (S)-2-hydroxy-acid oxidase, putative [Ri 0.852 0.475 0.791 3e-74
449453385 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.852 0.475 0.739 3e-71
449516252227 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.852 0.762 0.739 5e-71
224074053 364 predicted protein [Populus trichocarpa] 0.852 0.475 0.780 2e-70
255576605 364 (S)-2-hydroxy-acid oxidase, putative [Ri 0.852 0.475 0.751 1e-68
>gi|255576607|ref|XP_002529194.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] gi|223531372|gb|EEF33208.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 162/173 (93%)

Query: 31  MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
           M +EPVN+NEFQELA+ ALPKMYYD+YAGGAED+HTLKENVEAFHRIT RPRILVDVS+I
Sbjct: 1   MGSEPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFHRITIRPRILVDVSQI 60

Query: 91  DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
           D+STTIL YKISAPI+IAPTA+HKLANPEGE ATARAAA CNTIMVLS+ SS ++EEVA+
Sbjct: 61  DMSTTILGYKISAPIMIAPTAMHKLANPEGEAATARAAAVCNTIMVLSYMSSCTVEEVAS 120

Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
           SCNA+RFYQLYV+K+RDI+A LVQRAERNG+KA+VLT D PRLGRREADI+NK
Sbjct: 121 SCNAIRFYQLYVYKRRDISAQLVQRAERNGYKAIVLTVDAPRLGRREADIRNK 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789144|emb|CAN60339.1| hypothetical protein VITISV_031318 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442054|ref|XP_002270101.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Vitis vinifera] gi|297742968|emb|CBI35835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442052|ref|XP_002270074.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Vitis vinifera] gi|297742966|emb|CBI35833.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789143|emb|CAN60338.1| hypothetical protein VITISV_031317 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576595|ref|XP_002529188.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] gi|223531366|gb|EEF33202.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449453385|ref|XP_004144438.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516252|ref|XP_004165161.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224074053|ref|XP_002304232.1| predicted protein [Populus trichocarpa] gi|222841664|gb|EEE79211.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576605|ref|XP_002529193.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] gi|223531371|gb|EEF33207.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
TAIR|locus:2087487 363 HAOX1 [Arabidopsis thaliana (t 0.827 0.462 0.732 5.2e-65
TAIR|locus:2087517 363 HAOX2 [Arabidopsis thaliana (t 0.827 0.462 0.732 6e-64
UNIPROTKB|B8B8K5 366 GLO4 "Peroxisomal (S)-2-hydrox 0.832 0.461 0.710 1.3e-61
UNIPROTKB|Q8H3I4 366 GLO4 "Peroxisomal (S)-2-hydrox 0.832 0.461 0.710 1.3e-61
UNIPROTKB|B8AKX6 369 GLO1 "Peroxisomal (S)-2-hydrox 0.837 0.460 0.629 1.5e-53
UNIPROTKB|Q10CE4 369 GLO1 "Peroxisomal (S)-2-hydrox 0.837 0.460 0.629 1.5e-53
UNIPROTKB|B8B7C5 369 GLO5 "Peroxisomal (S)-2-hydrox 0.837 0.460 0.623 3.8e-53
UNIPROTKB|Q6YT73 369 GLO5 "Peroxisomal (S)-2-hydrox 0.837 0.460 0.623 3.8e-53
UNIPROTKB|B8AUI3 367 GLO3 "Peroxisomal (S)-2-hydrox 0.822 0.455 0.622 2.1e-52
UNIPROTKB|Q7FAS1 367 GLO3 "Peroxisomal (S)-2-hydrox 0.822 0.455 0.622 2.1e-52
TAIR|locus:2087487 HAOX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 123/168 (73%), Positives = 152/168 (90%)

Query:    36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
             VN++EFQELA+ ALPKMYYDFY GGAED+HTL ENV+AF RI FRPR+LVDVS ID+ST+
Sbjct:     5 VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIMFRPRVLVDVSNIDMSTS 64

Query:    96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
             +L Y ISAPI+IAPTA+HKLA+P+GE+ATA+AAA+CNTIM++SF S+ +IEEVA+SCNAV
Sbjct:    65 MLGYPISAPIMIAPTAMHKLAHPKGEIATAKAAAACNTIMIVSFMSTCTIEEVASSCNAV 124

Query:   156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
             RF Q+YV+K+RD+ A +V+RAE+ GFKA+VLT D PRLGRREADIKNK
Sbjct:   125 RFLQIYVYKRRDVTAQIVKRAEKAGFKAIVLTVDVPRLGRREADIKNK 172
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008891 "glycolate oxidase activity" evidence=ISS
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP
TAIR|locus:2087517 HAOX2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8B8K5 GLO4 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO4" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H3I4 GLO4 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H3I4GLO4_ORYSJ1, ., 1, ., 3, ., 1, 50.71000.83250.4617yesno
Q9LJH5GLO4_ARATH1, ., 1, ., 3, ., 1, 50.73210.82750.4628yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034041001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (364 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017898001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)
     •• 0.925
GSVIVG00026043001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (384 aa)
     •• 0.920
GSVIVG00022240001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)
   • •• 0.851
GSVIVG00037451001
SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (477 aa)
     •  0.800
GSVIVG00023979001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (436 aa)
     •  0.800
GSVIVG00019422001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (472 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
PLN02535 364 PLN02535, PLN02535, glycolate oxidase 1e-119
cd02809 299 cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom 3e-75
pfam01070 302 pfam01070, FMN_dh, FMN-dependent dehydrogenase 4e-74
PLN02493 367 PLN02493, PLN02493, probable peroxisomal (S)-2-hyd 7e-70
cd02922 344 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b 4e-65
PLN02979 366 PLN02979, PLN02979, glycolate oxidase 6e-54
cd03332 383 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) 3e-52
cd04737 351 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN 1e-49
COG1304 360 COG1304, idi, Isopentenyl diphosphate isomerase (B 1e-49
cd04736 361 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li 6e-46
TIGR02708 367 TIGR02708, L_lactate_ox, L-lactate oxidase 5e-38
PRK11197 381 PRK11197, lldD, L-lactate dehydrogenase; Provision 3e-33
TIGR03966 385 TIGR03966, actino_HemFlav, heme/flavin dehydrogena 4e-33
PRK05437 352 PRK05437, PRK05437, isopentenyl pyrophosphate isom 3e-06
TIGR02151 333 TIGR02151, IPP_isom_2, isopentenyl-diphosphate del 4e-05
cd02811 326 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth 5e-05
>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase Back     alignment and domain information 
 Score =  341 bits (876), Expect = e-119
 Identities = 141/173 (81%), Positives = 162/173 (93%)

Query: 31  MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
           MA E VN+NEFQELA+ ALPKMYYDFYAGGAED+HTLKENV+AF RITFRPR+LVDVS+I
Sbjct: 1   MADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKI 60

Query: 91  DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
           D+STTIL Y ISAPI+IAPTA+HKLA+PEGE+ATARAAA+CNTIMVLSF +S ++EEVA+
Sbjct: 61  DMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVAS 120

Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
           SCNAVRF QLYV+K+RDIAA LVQRAE+NG+KA+VLTAD PRLGRREADIKNK
Sbjct: 121 SCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNK 173

Length = 364
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase Back     alignment and domain information
>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase Back     alignment and domain information
>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase Back     alignment and domain information
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system Back     alignment and domain information
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
KOG0538 363 consensus Glycolate oxidase [Energy production and 100.0
PLN02493 367 probable peroxisomal (S)-2-hydroxy-acid oxidase 100.0
PLN02535 364 glycolate oxidase 100.0
PRK11197 381 lldD L-lactate dehydrogenase; Provisional 100.0
cd04736 361 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin 100.0
cd03332 383 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin 100.0
TIGR02708 367 L_lactate_ox L-lactate oxidase. Members of this pr 100.0
cd04737 351 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d 100.0
cd02922 344 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom 100.0
PF01070 356 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR 100.0
PLN02979 366 glycolate oxidase 100.0
COG1304 360 idi Isopentenyl diphosphate isomerase (BS_ypgA, MT 100.0
cd02809 299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 100.0
cd02811 326 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di 99.37
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 99.31
TIGR02151 333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 99.2
PRK05458 326 guanosine 5'-monophosphate oxidoreductase; Provisi 98.41
TIGR01306 321 GMP_reduct_2 guanosine monophosphate reductase, ba 98.36
cd00381 325 IMPDH IMPDH: The catalytic domain of the inosine m 97.33
PRK08649 368 inosine 5-monophosphate dehydrogenase; Validated 97.33
TIGR01304 369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 94.77
PRK06843 404 inosine 5-monophosphate dehydrogenase; Validated 94.49
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 93.77
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 93.22
cd04739 325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 92.66
cd02940 299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 92.59
TIGR01305 343 GMP_reduct_1 guanosine monophosphate reductase, eu 92.11
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 91.9
PRK07259 301 dihydroorotate dehydrogenase 1B; Reviewed 91.88
cd04740 296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 91.32
cd02810 289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 90.86
cd04738 327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 90.73
PRK05096 346 guanosine 5'-monophosphate oxidoreductase; Provisi 90.7
PRK05286 344 dihydroorotate dehydrogenase 2; Reviewed 89.03
TIGR01037 300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 88.56
PRK08318 420 dihydropyrimidine dehydrogenase subunit B; Validat 86.98
PRK07565 334 dihydroorotate dehydrogenase 2; Reviewed 85.68
PRK02506 310 dihydroorotate dehydrogenase 1A; Reviewed 85.61
cd04730 236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 85.07
PTZ00314 495 inosine-5'-monophosphate dehydrogenase; Provisiona 83.85
TIGR03151 307 enACPred_II putative enoyl-(acyl-carrier-protein) 83.22
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 82.92
TIGR01858 282 tag_bisphos_ald class II aldolase, tagatose bispho 80.04
>KOG0538 consensus Glycolate oxidase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-60  Score=411.92  Aligned_cols=169  Identities=62%  Similarity=0.984  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028827           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (203)
Q Consensus        35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~  114 (203)
                      ++|+.|||+.|+++||+.+|+||.|||+|++|+++|++||.||.|+||+|+||+.+|+||++||+++++||+|||||+|+
T Consensus         1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk   80 (363)
T KOG0538|consen    1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK   80 (363)
T ss_pred             CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (203)
Q Consensus       115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~  193 (203)
                      |+|||||.++||||+++|++|++||++++|+|||++++| +.+|||||+++||+++++|++|||++||+||+||||+|++
T Consensus        81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l  160 (363)
T KOG0538|consen   81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL  160 (363)
T ss_pred             ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence            999999999999999999999999999999999999995 8999999999999999999999999999999999999999


Q ss_pred             CCchhhhhcC
Q 028827          194 GRREADIKNK  203 (203)
Q Consensus       194 g~Re~d~r~~  203 (203)
                      |+|+.|+||+
T Consensus       161 G~R~~D~~n~  170 (363)
T KOG0538|consen  161 GRRESDIKNK  170 (363)
T ss_pred             cCchhhhhhc
Confidence            9999999985

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>PRK11197 lldD L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>TIGR02708 L_lactate_ox L-lactate oxidase Back     alignment and domain information
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1gyl_A 369 Involvement Of Tyr24 And Trp108 In Substrate Bindin 2e-58
1al7_A 359 Three-Dimensional Structures Of Glycolate Oxidase W 5e-58
1gox_A 370 Refined Structure Of Spinach Glycolate Oxidase At 2 6e-58
2rdt_A 387 Crystal Structure Of Human Glycolate Oxidase (Go) I 7e-40
2nzl_A 392 Crystal Structure Of Human Hydroxyacid Oxidase 1 Le 7e-40
2w0u_A 370 Crystal Structure Of Human Glycolate Oxidase In Com 2e-39
1tb3_A 352 Crystal Structure Analysis Of Recombinant Rat Kidne 2e-36
3sgz_A 352 High Resolution Crystal Structure Of Rat Long Chain 2e-36
2a7n_A 380 Crystal Structure Of The G81a Mutant Of The Active 2e-33
1huv_A 380 Crystal Structure Of A Soluble Mutant Of The Membra 3e-33
1ldc_A 511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 2e-32
1kbj_A 412 Crystallographic Study Of The Recombinant Flavin-Bi 5e-32
1ltd_A 506 The 2.6 Angstroms Refined Structure Of The Escheric 5e-32
1fcb_A 511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 5e-32
2oz0_A 511 Mechanistic And Structural Studies Of H373q Flavocy 5e-32
1qcw_A 410 Flavocytochrome B2, Arg289lys Mutant Length = 410 1e-31
1sze_A 511 L230a Mutant Flavocytochrome B2 With Benzoylformate 1e-31
1szf_A 511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 3e-31
2cdh_0 226 Architecture Of The Thermomyces Lanuginosus Fungal 8e-26
2j6x_A 374 The Crystal Structure Of Lactate Oxidase Length = 3 1e-25
2du2_A 374 Crystal Structure Analysis Of The L-Lactate Oxidase 2e-25
2nli_A 368 Crystal Structure Of The Complex Between L-Lactate 2e-25
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 138/170 (81%)
Query: 34  EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
           E  N+NE++ +A+  LPKM YDFYA GAED+ TL EN  AF RI FRPRIL+DV+ ID++
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94  TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
           TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++SS+EEVA++  
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
            +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 171
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 Back     alignment and structure
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 Back     alignment and structure
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 Back     alignment and structure
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 Back     alignment and structure
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 Back     alignment and structure
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 Back     alignment and structure
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 Back     alignment and structure
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 Back     alignment and structure
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 4e-93
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 4e-92
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 2e-91
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 1e-90
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 2e-90
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 7e-84
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 2e-38
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 6e-28
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 2e-21
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 1e-16
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 Back     alignment and structure
 Score =  275 bits (706), Expect = 4e-93
 Identities = 107/170 (62%), Positives = 138/170 (81%)

Query: 34  EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
           E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62

Query: 94  TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
           TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++SS+EEVA++  
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122

Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
            +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 Back     alignment and structure
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 100.0
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 100.0
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 100.0
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 100.0
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 100.0
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 100.0
2qr6_A 393 IMP dehydrogenase/GMP reductase; NP_599840.1, G re 99.82
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 99.73
3r2g_A 361 Inosine 5'-monophosphate dehydrogenase; structural 99.59
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 99.58
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 99.57
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 99.36
1ypf_A 336 GMP reductase; GUAC, purines, pyrimidines, nucleos 99.22
1eep_A 404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 99.05
2c6q_A 351 GMP reductase 2; TIM barrel, metal-binding, NADP, 98.99
1gte_A 1025 Dihydropyrimidine dehydrogenase; electron transfer 98.17
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 97.7
1f76_A 336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 97.48
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 97.06
2e6f_A 314 Dihydroorotate dehydrogenase; chagas disease, pyri 96.98
1ep3_A 311 Dihydroorotate dehydrogenase B (PYRD subunit); het 96.69
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 96.2
1jub_A 311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 96.2
2z6i_A 332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 95.43
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 95.27
3tjx_A 354 Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh 94.61
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 92.76
1wv2_A 265 Thiazole moeity, thiazole biosynthesis protein THI 92.68
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 92.66
3bw2_A 369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 92.31
4ef8_A 354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 91.49
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 90.6
3ffs_A 400 Inosine-5-monophosphate dehydrogenase; beta-alpha 90.47
3oix_A 345 Putative dihydroorotate dehydrogenase; dihydrooro 90.03
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 87.17
3glc_A295 Aldolase LSRF; TIM barrel, lyase, schiff base; HET 80.16
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Back     alignment and structure
Probab=100.00  E-value=6e-58  Score=411.10  Aligned_cols=169  Identities=47%  Similarity=0.682  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028827           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (203)
Q Consensus        35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~  114 (203)
                      ++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+|+++
T Consensus         2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~   81 (352)
T 3sgz_A            2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (352)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (203)
Q Consensus       115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~  193 (203)
                      |+||+||.++||||+++|++|++|+++++|+|||+++.+ ++.|||||+++|++.++++|+|||++||+|||||||+|+.
T Consensus        82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~  161 (352)
T 3sgz_A           82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (352)
T ss_dssp             GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999999987 7999999999999999999999999999999999999999


Q ss_pred             CCchhhhhcC
Q 028827          194 GRREADIKNK  203 (203)
Q Consensus       194 g~Re~d~r~~  203 (203)
                      |+||+|+|||
T Consensus       162 g~R~~d~r~~  171 (352)
T 3sgz_A          162 GNRRRDKRNQ  171 (352)
T ss_dssp             CCCHHHHHHH
T ss_pred             CcchhhhhcC
Confidence            9999999985
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Back     alignment and structure
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1kbia1 414 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal 4e-44
d1goxa_ 359 c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia 9e-44
d1p4ca_ 353 c.1.4.1 (A:) Membrane-associated (S)-mandelate deh 9e-40
d1tb3a1 349 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus 1e-39
d1p0ka_ 329 c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera 8e-24
d1vcfa1 310 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i 1e-22
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (377), Expect = 4e-44
 Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 6/174 (3%)

Query: 36  VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
           +NL +F+ LA   L K  + +Y+ GA DE T +EN  A+HRI F+P+ILVDV ++D+ST 
Sbjct: 26  INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 85

Query: 96  ILDYKISAPIIIAPTALHKLANPEGEVA------TARAAASCNTIMVLSFTSSSSIEEVA 149
           +L   +  P  ++ TAL KL NP                     I  L+  S   I E A
Sbjct: 86  MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 145

Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
            S   +++YQLYV   R I   LV+  E+ G KAL +T D P LG+RE D+K K
Sbjct: 146 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 199
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 Back     information, alignment and structure
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1tb3a1 349 Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI 100.0
d1goxa_ 359 Glycolate oxidase {Spinach (Spinacia oleracea) [Ta 100.0
d1kbia1 414 Flavocytochrome b2, C-terminal domain {Baker's yea 100.0
d1p4ca_ 353 Membrane-associated (S)-mandelate dehydrogenase {P 100.0
d1p0ka_ 329 Isopentenyl-diphosphate delta-isomerase {Bacillus 99.8
d1vcfa1 310 Isopentenyl-diphosphate delta-isomerase {Thermus t 99.78
d1gtea2 312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 95.69
d1pvna1 362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 95.66
d1jr1a1 378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 95.43
d1zfja1 365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 95.03
d1eepa_ 388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 95.03
d1vrda1 330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 94.72
d2cu0a1 368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 94.57
d2b4ga1 312 Dihydroorotate dehydrogenase {Trypanosoma brucei [ 90.38
d1ep3a_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 87.59
d1juba_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 86.73
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-48  Score=342.26  Aligned_cols=169  Identities=47%  Similarity=0.682  Sum_probs=165.2

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028827           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (203)
Q Consensus        35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~  114 (203)
                      ++||.|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|+||++.+
T Consensus         2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~   81 (349)
T d1tb3a1           2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (349)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (203)
Q Consensus       115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~  193 (203)
                      +.|+++|.++|++|+++|++|++||+++.++|+|.++.+ ++.|||+|+++|++.++++++|++++|++++++|||+|+.
T Consensus        82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~  161 (349)
T d1tb3a1          82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (349)
T ss_dssp             GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred             ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence            999999999999999999999999999999999998875 7899999999999999999999999999999999999999


Q ss_pred             CCchhhhhcC
Q 028827          194 GRREADIKNK  203 (203)
Q Consensus       194 g~Re~d~r~~  203 (203)
                      |+|++|+|++
T Consensus       162 ~~~~~d~r~~  171 (349)
T d1tb3a1         162 GNRRRDKRNQ  171 (349)
T ss_dssp             CCCHHHHHTT
T ss_pred             cchhhhhhcc
Confidence            9999999875
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Back     information, alignment and structure