Citrus Sinensis ID: 028844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHcc
Coil and Loop (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNtyrskgpvlTFSLLCKFFMLGVLGICLVQIFAITgikyssptlasamgnlIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSlykgppllgfsspsnsniqlpvseysnwALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Flexible Loop (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Low Complexity Region (SEG)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Disordered region (IsUnstruct)
***VEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS**NSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQ**
Disordered Region (DISOPRED)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLL********************ALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Disordered Region (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Disordered Region (DISPRO)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS*************SNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.911	0.504	0.473	2e-31
Q945L4	339	WAT1-related protein At5g	no	no	0.778	0.466	0.451	6e-30
Q9FL08	368	WAT1-related protein At5g	no	no	0.931	0.513	0.430	1e-29
F4KHA8	370	WAT1-related protein At5g	no	no	0.975	0.535	0.405	5e-28
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.921	0.480	0.365	2e-27
F4I5D5	375	WAT1-related protein At1g	no	no	0.926	0.501	0.355	2e-27
Q9FL41	402	WAT1-related protein At5g	no	no	0.704	0.355	0.423	3e-26
Q56X95	355	WAT1-related protein At3g	no	no	0.862	0.492	0.416	1e-25
Q9LRS5	353	WAT1-related protein At3g	no	no	0.862	0.495	0.422	4e-25
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.921	0.492	0.351	1e-24

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 113/192 (58%), Gaps = 7/192 (3%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLHYFIYNTYRSKG-PVLTF 58
           + ++E   VG+ TL KAA   GMS  V++VY Y      +L   F   ++RS+  P + F
Sbjct: 16  LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFC--SFRSRTLPPMNF 73

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
           S+L K  +LG++G C   I   TGI YSSPTLASA+ NL P  TFLLAV FRME V+ + 
Sbjct: 74  SILYKIVLLGIIG-CCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFKR 132

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTC 178
            SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG   L V  
Sbjct: 133 TSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILGAGFLAVEY 190

Query: 179 FSSATWKIFQVQ 190
           F    W I Q Q
Sbjct: 191 FCVPLWYIVQTQ 202

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  130 bits (327), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 17/175 (9%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
           M + E   VG+ TL KAA S G+S FV +VY    G+ +LL    + ++RS+  P LTFS
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLP-LTFFSFRSRSLPPLTFS 75

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
           +LC   +LG++     QI    GIKYSSPTL+SAM N+ P  TF+LAV FRME +++  +
Sbjct: 76  ILCNMGILGLIASAF-QILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKK 134

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLL 174
           SS AK+LGT++SI GA +V+LY GP L+              S +S+W +GG LL
Sbjct: 135 SSVAKVLGTILSIIGALVVTLYHGPMLM--------------SSHSDWIIGGGLL 175

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 6/195 (3%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  VE   VG  TL KAA   G+S +V+V Y   + T +LL   +      + P     L
Sbjct: 24  MFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRLPAAKSPL 83

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             K F+LG++G  + QI    GI YSSPTLASA+ NL P  TF LAV FRME+V +RS +
Sbjct: 84  FFKIFLLGLVGF-MSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRSSA 142

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYSNWALGGLLLT 175
           +QAKI+G ++SI+GA +V LYKGP +L  +S     P+ +  Q   S  S+W +GGLLL 
Sbjct: 143 TQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLLLA 202

Query: 176 VTCFSSATWKIFQVQ 190
              F  + W I Q +
Sbjct: 203 SQYFLISVWYILQTR 217

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 117/207 (56%), Gaps = 9/207 (4%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  VE   VG  TL KAA   G+S +V+V Y   + T +LL   +      + P     +
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLPSAKTPV 84

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
               F+L ++G  +  I    GI+YSSPTLASA+ NL P  TF LAV FRME++ +RS +
Sbjct: 85  FFNIFLLALVGF-MSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFS-----SPSNSNIQLPVSEYSNWALGGLLLT 175
           +QAKI+GT+VSI+GA +V LYKGP +L  +     SP+ S  Q   S  S+W +GGLLL 
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 176 VTCFSSATWKIFQVQSYFLALLWPMQI 202
                 + W I Q +   +  L+P +I
Sbjct: 204 TQYLLVSVWYILQTR---VMELYPEEI 227

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 111/197 (56%), Gaps = 10/197 (5%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  ++ G  G   + +AA++ G+S  V+ VY N +   +LL  F Y   + + P +T + 
Sbjct: 24  MLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLP-FAYFLEKKERPAITLNF 82

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L +FF L ++GI   Q F + G+  +SPT AS+M N +P ITFL+A   R+EKV I  R 
Sbjct: 83  LIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRRD 142

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSEYS--NWALGG 171
             +KILGT + +AGA +++LYKGP +   +S        +NS +  P+   +  NW LG 
Sbjct: 143 GISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLGC 202

Query: 172 LLLTVTCFSSATWKIFQ 188
           + L   C S + W +FQ
Sbjct: 203 IYLIGHCLSWSGWLVFQ 219

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 113/197 (57%), Gaps = 9/197 (4%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILL--HYFIYNTYRSKGPVLTF 58
           MA++E   + +  + K A++ GMS FV+VVY NA G+ +LL   +  +   R++  + ++
Sbjct: 16  MAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQSIFSW 75

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
            LL + F LG  GI + Q  A  G+++SSP +  AMG  IP  +FLL++     K+  R+
Sbjct: 76  PLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWRN 135

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY-------SNWALGG 171
            S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +         NW LG 
Sbjct: 136 TSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDNWFLGC 195

Query: 172 LLLTVTCFSSATWKIFQ 188
           + L V  FS + + + Q
Sbjct: 196 IFLAVAVFSVSLFNVVQ 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 97/144 (67%), Gaps = 1/144 (0%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  ++ G  GM  + K ++++GMS++V VVY +A+ T ++   F +   R   P +TFS+
Sbjct: 22  MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAP-FAFFFERKAQPKITFSI 80

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             + F+LG+LG  + Q F   G+KY+SPT + AM N++P +TF+LAV FRME + ++   
Sbjct: 81  FMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLW 140

Query: 121 SQAKILGTVVSIAGAFIVSLYKGP 144
            QAKI GTVV++AGA ++++YKGP
Sbjct: 141 CQAKIAGTVVTVAGAMLMTIYKGP 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 5/180 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E G V M TL KAA S G++++ +++Y   +G+ +LL   I++      P L+ S+
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLSI 76

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LCK  +LG+LG   + I    GI+YS+PTLASA+ N+ P ITF+LA+ FRMEK + + +S
Sbjct: 77  LCKIGVLGLLGSTYL-ITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSNWALGGLLLTV 176
           S AK++GT+VS+ GA +V LY GP +   SSP    ++       S  S+W +GG LL +
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAI 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 5/180 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E G VG+ TL K A S G++ + ++ Y   L + +LL    +       P L+ S+
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSI 77

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L K  +LG+LG   V I    GI+YSSPTLASA+ N+ P +TF+LA+ FRMEKV+ + RS
Sbjct: 78  LSKIGLLGLLGSMYV-ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSNWALGGLLLTV 176
           S AK++GT++S+ GA +V LY GP +   SSP   N +       S  S+W +GG LLT+
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 1/188 (0%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M ++++G  GM  L KA ++ GMSN+V VVY +A+ T ++  +  Y   + + P +T  +
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVR-PKMTLMI 77

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             K  +LG+L   + Q     G+KY++ T A+AM N++P ITF+LA  F +E+V +R   
Sbjct: 78  FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCIR 137

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFS 180
           S  K++GT+ ++ GA I++L KGP L  F +   S      ++  +   G +L+T+ CFS
Sbjct: 138 STGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCFS 197

Query: 181 SATWKIFQ 188
            A + I Q
Sbjct: 198 YACFMILQ 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
224135771	355	predicted protein [Populus trichocarpa]	0.847	0.484	0.554	3e-43
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.911	0.524	0.527	1e-41
225457103	362	PREDICTED: auxin-induced protein 5NG4-li	0.916	0.513	0.518	5e-41
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.901	0.524	0.497	6e-41
224099697	355	predicted protein [Populus trichocarpa]	0.901	0.515	0.502	7e-41
224057230	355	predicted protein [Populus trichocarpa]	0.916	0.523	0.497	4e-39
359491260	359	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.906	0.512	0.507	6e-38
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.901	0.525	0.468	2e-37
357463769	345	Auxin-induced protein 5NG4 [Medicago tru	0.906	0.533	0.489	2e-37
296087699	345	unnamed protein product [Vitis vinifera]	0.931	0.547	0.481	2e-37

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/175 (55%), Positives = 126/175 (72%), Gaps = 3/175 (1%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M +VE  +VG+ TL KAAMS GMS FV+VVY NAL T ILL   I+  YR+K P +T+SL
Sbjct: 16  MVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLPSLIF--YRTKRPPVTYSL 73

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LCKFF+L ++GI L+Q    TG+ YSSPTLASAMG LIP  TFLLAV FRMEK+  RS  
Sbjct: 74  LCKFFLLSLVGITLMQNCVFTGVSYSSPTLASAMGQLIPAFTFLLAVIFRMEKLDWRSSR 133

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWALGGLLL 174
           S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +GGL L
Sbjct: 134 SRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWIIGGLFL 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 131/197 (66%), Gaps = 12/197 (6%)

Query: 1   MALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILL-HYFIYNTYRSKGPVLTF 58
           M +VE  +VG+ TL K AMS+ GM++F++V+Y NAL TFILL  YF+ N  R+  P L+F
Sbjct: 16  MVIVECLDVGLTTLSKEAMSTKGMNHFIFVLYSNALATFILLPSYFLIN--RTTRPPLSF 73

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
           SLL KFF LG++GI ++Q    TGI YSSPTL SAM NL P ITF+LAV FRMEK+   S
Sbjct: 74  SLLAKFFFLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVLAVIFRMEKLDAGS 133

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-SSPSNSNIQLP----VSEYSNWALGGLL 173
             SQ KI+GTVVSI+GA IV+ YKG P+    + PS S    P    ++E SNW +GGL 
Sbjct: 134 SISQIKIVGTVVSISGALIVTFYKGAPISSIQTQPSTSQ---PFWSLLAETSNWVIGGLF 190

Query: 174 LTVTCFSSATWKIFQVQ 190
           L     S A W I Q +
Sbjct: 191 LATASLSLAIWNIAQAE 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457103|ref|XP_002283377.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 123/191 (64%), Gaps = 5/191 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKGPVLTFS 59
           M  VE  +VG+ TL KAAMS GM  FV+VVY NA  + IL    FI+   R+K P L+FS
Sbjct: 16  MVTVECLDVGLTTLSKAAMSRGMDRFVFVVYSNAFASLILFSISFIF--LRTKRPPLSFS 73

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
           LLCKFF+L + GI ++Q    TG+ Y SPTL SAM NLIP  TFLLAV FR+E + +RS 
Sbjct: 74  LLCKFFLLSLAGITVMQNCVFTGVSYGSPTLGSAMSNLIPAFTFLLAVAFRLENLDLRSS 133

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLG--FSSPSNSNIQLPVSEYSNWALGGLLLTVT 177
            S  KILGT+VSI+GA IV+LYKGPP+      SPS S+        +NW +GGL   + 
Sbjct: 134 RSLIKILGTLVSISGALIVTLYKGPPIGAGLIKSPSISSNDHLQKTANNWVIGGLFFAMA 193

Query: 178 CFSSATWKIFQ 188
             S + W IFQ
Sbjct: 194 GLSISVWNIFQ 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 133/189 (70%), Gaps = 6/189 (3%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  +VG++ + K AMS GMS+F++V Y NAL + ILL + + +  R++ P LTFS+
Sbjct: 12  MVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHR-RTERPPLTFSI 70

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           +C FF+LG+ G CL Q F   GI  SSPTL +AM NL+PG+TF+LAV FRMEK+  R+ S
Sbjct: 71  VCGFFLLGLFG-CLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEKLDGRTSS 129

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNIQLPVSEYSNWALGGLLLTVTCF 179
           S AK +GT++S+ GAFI++ YKGP +L   +PS NS+ QL +++ SNW +GGLLL   C 
Sbjct: 130 SLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQL-LTQPSNWIIGGLLLAADCV 186

Query: 180 SSATWKIFQ 188
            ++ W I Q
Sbjct: 187 MTSAWIIIQ 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 131/195 (67%), Gaps = 12/195 (6%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILL--HYFIYNTYRSKGPVLTF 58
           M + E  +VG++ L KAAMS GM+NF++V+Y NAL + ILL   +F++   RS+ P LTF
Sbjct: 12  MVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLH---RSERPPLTF 68

Query: 59  SLLCKFFMLGVLGICLVQ----IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKV 114
            +LC FF+LG+ G  ++     IF   GI  SS TL +AM NLIPG+TF+LAV FRMEK+
Sbjct: 69  PILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVAFRMEKL 128

Query: 115 AIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP-VSEYSNWALGGLL 173
             +S S+  K  GT+VS+AGAFIV  YKGPPLL   +PS SN+    +S+  NW +GGLL
Sbjct: 129 DWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLL--MAPSTSNLPHELLSQQQNWIIGGLL 186

Query: 174 LTVTCFSSATWKIFQ 188
           L V C  ++ W I Q
Sbjct: 187 LAVDCVMASAWLIIQ 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 127/189 (67%), Gaps = 3/189 (1%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  + G + LGKAAMS+GMS+FV+V+Y NA+   ILL         S+ P LT S+
Sbjct: 13  MVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSSERPPLTLSI 72

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           +  FF+LG+ G CL Q F   GI  SSPTL +AM NL+PG+TF+LA+ FRME V  +S S
Sbjct: 73  VSGFFLLGLFG-CLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRMENVDWKSYS 131

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLL-GFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
           + AK +GT+VSI GAFIV+ YKGP LL    S + S+ Q+ + + SNW LGGLL+ V C 
Sbjct: 132 TLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQ-SNWVLGGLLMAVDCA 190

Query: 180 SSATWKIFQ 188
           ++++W I Q
Sbjct: 191 TASSWLIVQ 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491260|ref|XP_003634251.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 130/189 (68%), Gaps = 5/189 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFIL-LHYFIYNTYRSKGPVLTFS 59
           M ++E  +VG++TL KAAMS GM++FV+VVYYNAL + I  L  FI+  +R+K P LTFS
Sbjct: 1   MVMMECLDVGLVTLSKAAMSRGMNHFVFVVYYNALASLIFFLLSFIF--HRTKRPPLTFS 58

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             CKFF+LG+ GI ++Q +  TG+ YSSPTL  AM NLIP  TFLLAV  R+E + +RS 
Sbjct: 59  HFCKFFLLGLPGITVMQNWVFTGVSYSSPTLCYAMSNLIPAFTFLLAVAIRLEDLDLRSS 118

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
            SQ K+LGT++SI+GA IV+L  GPP++G  S S++N  L  ++  NW +GGL     C 
Sbjct: 119 RSQIKLLGTLISISGALIVTLXXGPPIIGGGSISSNNHLLKTAD--NWVIGGLFFAAACL 176

Query: 180 SSATWKIFQ 188
           S + W   Q
Sbjct: 177 SLSAWNTCQ 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 127/192 (66%), Gaps = 9/192 (4%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M ++E  EVG+ TL KAAM  GMS+FV+VVY NAL   ILL   +    R   P LT S+
Sbjct: 10  MLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALSVPILLFCCLLFHRRRFPPPLTLSI 69

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LC+ F+LG +  C  Q+F   GI+YSSPTLASAM +L+P  TF+LA+  RMEK+ +++ S
Sbjct: 70  LCRIFILGFIS-CSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRMEKLDLKAGS 128

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS----NSNIQLPVSEYSNWALGGLLLTV 176
            +AK +GT+VSI GA IV++YKGP  + F+S +    + N++   S+ SNW +GG LL +
Sbjct: 129 CRAKCIGTIVSIIGALIVTIYKGPQ-IAFASSTFKILDENLR---SQISNWVIGGFLLAI 184

Query: 177 TCFSSATWKIFQ 188
           +  S A + + Q
Sbjct: 185 SAVSIALFYVVQ 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463769|ref|XP_003602166.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355491214|gb|AES72417.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 124/190 (65%), Gaps = 6/190 (3%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILL--HYFIYNTYRSKGPVLTF 58
           M + E  +V +I L K  MS GM++F+++ Y N +   +LL   +FI+   R   P +TF
Sbjct: 11  MIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHRFQR---PPITF 67

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
           S L  FF+LG+LG  L Q+F   GI YSS TLA+AM NL+PG TF+LAV FRME++  RS
Sbjct: 68  STLSGFFILGLLGY-LAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLFRMEELDWRS 126

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTC 178
            SS AK LGT+VSIAGAFI +LYKG  LL   SP+N + Q   S+ S+W LGGL L   C
Sbjct: 127 PSSLAKSLGTIVSIAGAFIATLYKGAALLKGPSPANFSQQPLFSQDSDWILGGLFLAADC 186

Query: 179 FSSATWKIFQ 188
             ++++ I Q
Sbjct: 187 VMASSFTIVQ 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087699|emb|CBI34955.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 121/193 (62%), Gaps = 4/193 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  +E   VG+ TL KAA   G++  V+VVY   +   +LL        R   P L+F +
Sbjct: 1   MVALECTNVGLNTLYKAATLRGLNYHVFVVYAYGIAALVLLPSPFITHRRGVLPPLSFPV 60

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LCK F+LG++G C  Q     GI  SSPTLASA+ NL+P  TF+LAV FRMEK+A+RS S
Sbjct: 61  LCKIFVLGLIG-CASQTMGYRGINISSPTLASAISNLVPAFTFILAVIFRMEKLALRSSS 119

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP---VSEYSNWALGGLLLTVT 177
           SQAKI+GT+VSI+GAF+V+LYKGPP++   SPS S  Q P    S  S+W +G L L+V 
Sbjct: 120 SQAKIIGTIVSISGAFVVTLYKGPPIILTPSPSISLHQPPHPLRSSESSWIIGALFLSVE 179

Query: 178 CFSSATWKIFQVQ 190
            F +  W I Q  
Sbjct: 180 YFLTPVWYIVQAH 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.857	0.490	0.441	7.2e-36
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.916	0.506	0.476	1.2e-35
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.857	0.492	0.453	7.7e-32
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.788	0.471	0.446	3.3e-31
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.837	0.474	0.451	5.4e-31
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.945	0.533	0.402	3e-30
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.965	0.529	0.416	3.8e-30
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.931	0.544	0.408	4.9e-30
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.921	0.480	0.365	5.6e-29
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.926	0.501	0.365	7.1e-29

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 80/181 (44%), Positives = 119/181 (65%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             M   E G V M TL KAA S G++++ +++Y   +G+ +LL   I++ YRS+  P L+ S
Sbjct:    17 MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFS-YRSRSLPSLSLS 75

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +LCK  +LG+LG   + I    GI+YS+PTLASA+ N+ P ITF+LA+ FRMEK + + +
Sbjct:    76 ILCKIGVLGLLGSTYL-ITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEK 134

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ---LPVSEY-SNWALGGLLLT 175
             SS AK++GT+VS+ GA +V LY GP +   SSP    ++   LP+S   S+W +GG LL 
Sbjct:   135 SSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLA 194

Query:   176 V 176
             +
Sbjct:   195 I 195

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 91/191 (47%), Positives = 117/191 (61%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             + ++E   VG+ TL KAA   GMS  V++VY   L   +LL   ++ ++RS+  P + FS
Sbjct:    16 LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPS-LFCSFRSRTLPPMNFS 74

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +L K  +LG++G C   I   TGI YSSPTLASA+ NL P  TFLLAV FRME V+ +  
Sbjct:    75 ILYKIVLLGIIGCCS-NIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFKRT 133

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
             SS AK+LGTVVSI GAFIV+LY GP ++  S PS S ++   S   NW LG   L V  F
Sbjct:   134 SSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS-LRSQ-STNPNWILGAGFLAVEYF 191

Query:   180 SSATWKIFQVQ 190
                 W I Q Q
Sbjct:   192 CVPLWYIVQTQ 202

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 82/181 (45%), Positives = 115/181 (63%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             M   E G VG+ TL K A S G++ + ++ Y   L + +LL    + T RS+  P L+ S
Sbjct:    18 MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFF-TDRSRSLPPLSLS 76

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +L K  +LG+LG   V I    GI+YSSPTLASA+ N+ P +TF+LA+ FRMEKV+ + R
Sbjct:    77 ILSKIGLLGLLGSMYV-ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKER 135

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SNWALGGLLLT 175
             SS AK++GT++S+ GA +V LY GP +   SSP   N  QL  P+S   S+W +GG LLT
Sbjct:   136 SSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLT 195

Query:   176 V 176
             +
Sbjct:   196 I 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 79/177 (44%), Positives = 110/177 (62%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             M + E   VG+ TL KAA S G+S FV +VY    G+ +LL    ++ +RS+  P LTFS
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFS-FRSRSLPPLTFS 75

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +LC   +LG++     QI    GIKYSSPTL+SAM N+ P  TF+LAV FRME +++  +
Sbjct:    76 ILCNMGILGLIASAF-QILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKK 134

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTV 176
             SS AK+LGT++SI GA +V+LY GP L+              S +S+W +GG LL +
Sbjct:   135 SSVAKVLGTILSIIGALVVTLYHGPMLM--------------SSHSDWIIGGGLLAL 177

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 80/177 (45%), Positives = 114/177 (64%)

Query:     5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFSLLCK 63
             E   VG+ TL K A S G++ + ++ Y   L + +LL    + T RS+  P L+ S+L K
Sbjct:    22 ETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFF-TNRSRSLPPLSASILSK 80

Query:    64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQA 123
               +LG LG   V    I GI+YS+PTLASA+GN++P +TF+LAV FRMEKV+ + RSS A
Sbjct:    81 IGLLGFLGSMYVITGGI-GIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVA 139

Query:   124 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SNWALGGLLLTV 176
             K++GT++S+ GAF+V  Y GP +   SSP   N  QL  P+S   S+W +GG +LT+
Sbjct:   140 KVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTI 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 81/201 (40%), Positives = 121/201 (60%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
             M +VE   VG+ TL K A S G++ + ++ Y   L + +LL    +    S  P L+ S+
Sbjct:    21 MLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVSI 80

Query:    61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             L K  +LG LG   V I    GI+YSSPTLASA+ N+ P +TF+LA+ FRMEKV+ + RS
Sbjct:    81 LSKIGLLGFLGSMYV-ITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERS 139

Query:   121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL---PVSEY-SNWALGGLLLTV 176
             S AK++GT++S+ GA +V  Y GP +   SSP   N +    P+S   S+W +GG LLT+
Sbjct:   140 SLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIGGALLTM 199

Query:   177 T-CFSSATWKIFQVQSYFLAL 196
                F S +   F +Q++ +++
Sbjct:   200 QGIFVSVS---FILQAHIMSV 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 87/209 (41%), Positives = 122/209 (58%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKG-PVLTF 58
             M  VE   VG  TL KAA   G+S +V+V Y   + T +LL    I+   RSK  P    
Sbjct:    25 MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFG--RSKRLPSAKT 82

Query:    59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
              +    F+L ++G   + I    GI+YSSPTLASA+ NL P  TF LAV FRME++ +RS
Sbjct:    83 PVFFNIFLLALVGFMSL-IVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRS 141

Query:   119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQL--PVSEY-SNWALGGLL 173
              ++QAKI+GT+VSI+GA +V LYKGP +L  +S  P +  I L   ++ + S+W +GGLL
Sbjct:   142 SATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLL 201

Query:   174 LTVTCFSSATWKIFQVQSYFLALLWPMQI 202
             L       + W I Q +   +  L+P +I
Sbjct:   202 LATQYLLVSVWYILQTR---VMELYPEEI 227

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 83/203 (40%), Positives = 121/203 (59%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKGPVLTFS 59
             M  +E   VG   L KAA   G S +V+V Y     T +LL    I+   RS  P    S
Sbjct:    21 MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSL-PTAKSS 79

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             L  K F+L +LG+   ++    GI+YSSPTL+SA+ NL P  TF+LA+FFRME+V +RS 
Sbjct:    80 LFFKIFLLALLGLTS-RVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSS 138

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
             ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +GGLLL +   
Sbjct:   139 ATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIGGLLLGLQFL 190

Query:   180 SSATWKIFQVQSYFLALLWPMQI 202
               + W  F +Q++ + + +P +I
Sbjct:   191 LLSVW--FILQTHIMEI-YPEEI 210

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 72/197 (36%), Positives = 111/197 (56%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
             M  ++ G  G   + +AA++ G+S  V+ VY N +   +LL  F Y   + + P +T + 
Sbjct:    24 MLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLP-FAYFLEKKERPAITLNF 82

Query:    61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             L +FF L ++GI   Q F + G+  +SPT AS+M N +P ITFL+A   R+EKV I  R 
Sbjct:    83 LIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRRD 142

Query:   121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSEYS--NWALGG 171
               +KILGT + +AGA +++LYKGP +   +S        +NS +  P+   +  NW LG 
Sbjct:   143 GISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLGC 202

Query:   172 LLLTVTCFSSATWKIFQ 188
             + L   C S + W +FQ
Sbjct:   203 IYLIGHCLSWSGWLVFQ 219

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 72/197 (36%), Positives = 118/197 (59%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYN-TYRSKGPVLTF 58
             MA++E   + +  + K A++ GMS FV+VVY NA G+ +LL + F+++   R++  + ++
Sbjct:    16 MAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQSIFSW 75

Query:    59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
              LL + F LG  GI + Q  A  G+++SSP +  AMG  IP  +FLL++     K+  R+
Sbjct:    76 PLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWRN 135

Query:   119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE----YS---NWALGG 171
              S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +    Y+   NW LG 
Sbjct:   136 TSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDNWFLGC 195

Query:   172 LLLTVTCFSSATWKIFQ 188
             + L V  FS + + + Q
Sbjct:   196 IFLAVAVFSVSLFNVVQ 212

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.1426.1 SubName- Full=Putative uncharacterized protein; (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-34

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  125 bits (315), Expect = 1e-34
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E   VG+ TL K A S G++ + ++ Y   L + +LL    +       P L+ S+
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L K  +LG LG   V I    GI+YS+PTLASA+ N+ P +TF+LA+ FRMEKV+ + RS
Sbjct: 78  LSKIGLLGFLGSMYV-ITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLP---VSEYSNWALGGLLLTV 176
           S AK++GT++S+ GA +V  Y GP +   SSP   N  QL     S  S+W +GG LLT+
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PLN00411	358	nodulin MtN21 family protein; Provisional	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
PRK11689	295	aromatic amino acid exporter; Provisional	99.86
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.85
PRK15430	296	putative chloramphenical resistance permease RarD;	99.82
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.79
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.73
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.72
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.71
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.62
COG2510	140	Predicted membrane protein [Function unknown]	99.57
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.57
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.45
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.41
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.4
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.33
PRK11272	292	putative DMT superfamily transporter inner membran	99.32
COG2962	293	RarD Predicted permeases [General function predict	99.26
PRK11689	295	aromatic amino acid exporter; Provisional	99.21
PLN00411	358	nodulin MtN21 family protein; Provisional	99.2
KOG2765	416	consensus Predicted membrane protein [Function unk	99.13
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.12
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.08
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.07
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.06
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.05
PRK15430	296	putative chloramphenical resistance permease RarD;	98.88
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.87
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.81
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.79
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.72
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.71
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.53
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.45
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.43
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.24
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.14
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.86
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.71
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.71
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.67
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.67
COG2962	293	RarD Predicted permeases [General function predict	97.64
KOG2766	336	consensus Predicted membrane protein [Function unk	97.6
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.58
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.54
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.52
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.52
COG2076	106	EmrE Membrane transporters of cations and cationic	97.48
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.43
PRK11431	105	multidrug efflux system protein; Provisional	97.31
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.26
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.23
PRK13499	345	rhamnose-proton symporter; Provisional	97.02
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.9
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.8
PRK13499	345	rhamnose-proton symporter; Provisional	96.73
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.69
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.62
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.49
KOG1580	337	consensus UDP-galactose transporter related protei	95.91
KOG2765	416	consensus Predicted membrane protein [Function unk	95.67
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.99
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.78
KOG1580	337	consensus UDP-galactose transporter related protei	93.62
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.27
KOG1581	327	consensus UDP-galactose transporter related protei	92.13
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	92.0
KOG1581	327	consensus UDP-galactose transporter related protei	91.26
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	91.1
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.03
KOG1582	367	consensus UDP-galactose transporter related protei	89.98
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	89.72
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.36
KOG4831	125	consensus Unnamed protein [Function unknown]	87.21
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	86.22
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	86.18
KOG3912	372	consensus Predicted integral membrane protein [Gen	86.18
KOG1443	349	consensus Predicted integral membrane protein [Fun	85.79
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	81.83

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.94  E-value=5.1e-25  Score=191.14  Aligned_cols=189  Identities=39%  Similarity=0.594  Sum_probs=145.7

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIF   78 (203)
Q Consensus         1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~lgl~g~~l~~~~   78 (203)
                      |+.+++.+++..++.|.+++.|++|..+.++|+.+|++++++ .+.+  +|+ +.++.+++++..+.+.|+++ ++++.+
T Consensus        18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~--~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~   94 (358)
T PLN00411         18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT--NRSRSLPPLSVSILSKIGLLGFLG-SMYVIT   94 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHH-HHHHHH
Confidence            578999999999999999999999999999999999999998 6554  332 23445688889999999998 788889


Q ss_pred             HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--
Q 028844           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN--  156 (203)
Q Consensus        79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~--  156 (203)
                      ++.|++|+++++++++.+++|+++.+++++++.|+++.+++.+++|++|++++++|+.++...+++.... ++|++..  
T Consensus        95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~~~~~~  173 (358)
T PLN00411         95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSPPYLNF  173 (358)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-ccccccccc
Confidence            9999999999999999999999999999999544444444444449999999999999887544432110 0000000  


Q ss_pred             -CCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          157 -IQL--PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       157 -~~~--~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                       ...  ......+..+|+++.+++++|||+|++++||...
T Consensus       174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~  213 (358)
T PLN00411        174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS  213 (358)
T ss_pred             cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000  0111233567999999999999999999999753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.87  E-value=1.1e-20  Score=159.79  Aligned_cols=158  Identities=12%  Similarity=0.098  Sum_probs=132.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      +...++||.+++++|.+.+ ++||.+++++|+.++++++++ ...+   |++  ..+++++.+....|.++...++.+++
T Consensus        14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~---~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~   87 (292)
T PRK11272         14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR---GHP--LPTLRQWLNAALIGLLLLAVGNGMVT   87 (292)
T ss_pred             HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh---CCC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999887 499999999999999999988 4432   222  23567778888889887677888999


Q ss_pred             HHh-hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 028844           81 TGI-KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL  159 (203)
Q Consensus        81 ~gl-~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~  159 (203)
                      .+. +++++++++++.++.|+++.+++++ +|||++++      +++|++++++|+.++... +.               
T Consensus        88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~---------------  144 (292)
T PRK11272         88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN---------------  144 (292)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc---------------
Confidence            999 9999999999999999999999985 69999999      999999999999887521 11               


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          160 PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY  192 (203)
Q Consensus       160 ~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~  192 (203)
                          .+....|+++.+++++|||.|.+.+||..
T Consensus       145 ----~~~~~~G~l~~l~a~~~~a~~~~~~~~~~  173 (292)
T PRK11272        145 ----LSGNPWGAILILIASASWAFGSVWSSRLP  173 (292)
T ss_pred             ----cccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                11234799999999999999999999964

>TIGR00688 rarD rarD protein

Probab=99.86  E-value=2.4e-20  Score=154.66  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCCCHHH-HHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSL-LCKFFMLGVLGICL   74 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-----~~~~~~~~-~~~~~~lgl~g~~l   74 (203)
                      ++++++||.++++.|. .++ +||.++.++|+.++.+++.+ ...+  ++++     .++.++++ +......|++ ...
T Consensus         8 i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~   82 (256)
T TIGR00688         8 LLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLF--RQWAALIERLKRIQKRPLILSLLLCGLL-IGF   82 (256)
T ss_pred             HHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHhCcccchHHHHHHHHHHH-HHH
Confidence            5788999999999998 454 99999999999999988877 4333  2211     01112222 3445566666 478


Q ss_pred             HHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 028844           75 VQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN  154 (203)
Q Consensus        75 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~  154 (203)
                      ++.+++++++++++++|+++.+++|+++++++++++|||++++      +++|++++++|+.++...++           
T Consensus        83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-----------  145 (256)
T TIGR00688        83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-----------  145 (256)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-----------
Confidence            9999999999999999999999999999999999999999999      99999999999988753211           


Q ss_pred             CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          155 SNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       155 ~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                               +. .    .+.+++++|||.|.+.+||..+
T Consensus       146 ---------~~-~----~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       146 ---------SL-P----WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             ---------Cc-h----HHHHHHHHHHHHHHHHHhhcCC
Confidence                     11 1    3578899999999999999753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=3.6e-20  Score=157.12  Aligned_cols=157  Identities=18%  Similarity=0.141  Sum_probs=124.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~   81 (203)
                      ++++++||.+++++|.+.++ +||..+.++|+.++++.+++ +.+   ++   +.+++   .....|++....++.+++.
T Consensus        10 l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~-~~~---~~---~~~~~---~~~~~g~~~~~~~~~~~~~   78 (299)
T PRK11453         10 LLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIF-FVA---RP---KVPLN---LLLGYGLTISFGQFAFLFC   78 (299)
T ss_pred             HHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH-Hhc---CC---CCchH---HHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999875 99999999999998877665 222   11   12232   3344566555566778889


Q ss_pred             Hhhc-cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844           82 GIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP  160 (203)
Q Consensus        82 gl~~-t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~  160 (203)
                      ++++ .++++++++.+++|+++.+++++++|||++++      +++|++++++|+.++... +.                
T Consensus        79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~----------------  135 (299)
T PRK11453         79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL----------------  135 (299)
T ss_pred             HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC----------------
Confidence            9998 58899999999999999999999999999999      999999999999887621 11                


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                       +.......|+++.+++++||+.|++++||..+
T Consensus       136 -~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~  167 (299)
T PRK11453        136 -NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMS  167 (299)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             01122347999999999999999999999753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.86  E-value=2.1e-20  Score=158.37  Aligned_cols=166  Identities=16%  Similarity=0.111  Sum_probs=125.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~   81 (203)
                      +.+.++||.+++..|.+.++ +||..+.++|+.++++++++ +.+   +++.++.++    +..+.+.++...+..+++.
T Consensus        10 l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~-~~~---~~~~~~~~~----~~~~~~~l~~~~~~~~~~~   80 (295)
T PRK11689         10 LIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLL-TVG---FPRLRQFPK----RYLLAGGLLFVSYEICLAL   80 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHH-Hcc---ccccccccH----HHHHHHhHHHHHHHHHHHH
Confidence            46789999999999999876 99999999999999999887 221   212122222    2334455566777888888


Q ss_pred             Hhhc----cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844           82 GIKY----SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI  157 (203)
Q Consensus        82 gl~~----t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~  157 (203)
                      |+++    +++++++++.+++|+++.+++++++|||++++      +++|++++++|+.++...+ .+.+..+ .     
T Consensus        81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~~~~~-~-----  147 (295)
T PRK11689         81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGLSLAE-L-----  147 (295)
T ss_pred             HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccchhhh-h-----
Confidence            8765    57788999999999999999999999999999      9999999999998876321 1000000 0     


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY  192 (203)
Q Consensus       158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~  192 (203)
                         .+...+...|+++.++|++|||.|+++.||..
T Consensus       148 ---~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~  179 (295)
T PRK11689        148 ---INNIASNPLSYGLAFIGAFIWAAYCNVTRKYA  179 (295)
T ss_pred             ---hhccccChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               00011234699999999999999999999975

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.85  E-value=5.2e-20  Score=152.23  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028844            8 EVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS   87 (203)
Q Consensus         8 wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~   87 (203)
                      ||.+++..|.+++++.||....+.|+..+.+++.+. ..  .+     .+++++.+....|.++..+++.+++.|+++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~-~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~   72 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPL-LR--RR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLP   72 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH--hc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999998877999999999999998888772 22  22     23456677888888888999999999999999


Q ss_pred             hhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchh
Q 028844           88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW  167 (203)
Q Consensus        88 a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
                      +++++++.+++|+++.+++++++|||++++      ++.|+.++++|+.++... +.                   .+.+
T Consensus        73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~  126 (260)
T TIGR00950        73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSIN  126 (260)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------cccc
Confidence            999999999999999999999999999999      999999999999887521 11                   1234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          168 ALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       168 ~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                      ..|+++.++++++|+.|.+++|+..+
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~  152 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVK  152 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            57999999999999999999999874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.82  E-value=2.5e-19  Score=151.85  Aligned_cols=155  Identities=12%  Similarity=-0.024  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC--C-CCCHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG--P-VLTFSLLCKFFMLGVLGICLVQI   77 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~--~-~~~~~~~~~~~~lgl~g~~l~~~   77 (203)
                      +++.++||.+++..|.. + ++||.++.++|+.++.+++.+ ...+  ++++.  + ..+++++.. ...+.++...++.
T Consensus        14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   88 (296)
T PRK15430         14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC--RQWSYLKTLIQTPQKIFM-LAVSAVLIGGNWL   88 (296)
T ss_pred             HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHcCHHHHHH-HHHHHHHHHHHHH
Confidence            46789999999999985 4 499999999999999998887 4443  21111  0 113444333 3466667788999


Q ss_pred             HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844           78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI  157 (203)
Q Consensus        78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~  157 (203)
                      ++++|++++++++++++.+++|+++.+++++++|||++++      ++.|++++++|+.++...++              
T Consensus        89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~--------------  148 (296)
T PRK15430         89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG--------------  148 (296)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC--------------
Confidence            9999999999999999999999999999999999999999      99999999999998763211              


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY  192 (203)
Q Consensus       158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~  192 (203)
                            + .    ..+.++++++||.|++++||..
T Consensus       149 ------~-~----~~~~l~aa~~~a~~~i~~r~~~  172 (296)
T PRK15430        149 ------S-L----PIIALGLAFSFAFYGLVRKKIA  172 (296)
T ss_pred             ------C-c----cHHHHHHHHHHHHHHHHHHhcC
Confidence                  1 1    1457889999999999999974

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.79  E-value=9.2e-18  Score=142.39  Aligned_cols=151  Identities=13%  Similarity=0.118  Sum_probs=125.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 028844           13 TLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS   92 (203)
Q Consensus        13 i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~as   92 (203)
                      +..|.++++--+|..+++.|+.++.+.+.+.+..  +.+++++.+++++++++..|+++ +.++.+.+.|++|+++++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~   95 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS--GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTH   95 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHH
Confidence            4679888754679999999999998776652111  12233456788999999999997 88899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHH
Q 028844           93 AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL  172 (203)
Q Consensus        93 il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l  172 (203)
                      ++.+++|+++++++++++|||++++      ++.|++++++|+.+..   ..+                  .+....|++
T Consensus        96 li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~------------------~~~~~~G~~  148 (302)
T TIGR00817        96 TIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE------------------LSFNWAGFL  148 (302)
T ss_pred             HHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc------------------ccccHHHHH
Confidence            9999999999999999999999999      9999999999997643   111                  112357999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028844          173 LLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       173 l~l~aa~~~a~y~il~~~~~~  193 (203)
                      +.++|+++|+.|++++||..+
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~  169 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMT  169 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999765

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.73  E-value=1.9e-16  Score=134.03  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=121.4

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++.++|+.+.++.|.+.++ +||..+.++|+.++++++++ +.+  .++.  +.++++++.....|++. ...+.+++
T Consensus        17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~-~~~--~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~   89 (293)
T PRK10532         17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIA-IFK--PWRL--RFAKEQRLPLLFYGVSL-GGMNYLFY   89 (293)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHh--HHhc--cCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence            357899999999999999887 99999999999999998887 222  1111  23566777777888775 67788899


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP  160 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~  160 (203)
                      ++++++|++.++++.++.|+++.+++    +||.+        +..++.++++|+.++... +.+               
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~~---------------  141 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQD---------------  141 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CCC---------------
Confidence            99999999999999999999998876    24433        345677889999876521 111               


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                        .+.....|+++.++++++||.|+++.||..+
T Consensus       142 --~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~  172 (293)
T PRK10532        142 --VSHVDLTGAALALGAGACWAIYILSGQRAGA  172 (293)
T ss_pred             --cccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              1112357999999999999999999999754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.72  E-value=3.6e-16  Score=131.52  Aligned_cols=159  Identities=9%  Similarity=0.073  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      +.++++|+...+..|...++ .++  ..+++...+.+++.| ...+. .++.++..+ +++......+.++...++.+++
T Consensus         7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYL-AQVGWSRLP-ATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhc-ccCCCCCcc-hhhHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999965444 344  347777777777777 43320 122222223 3334455556666689999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP  160 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~  160 (203)
                      .|++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|+.++...+ .                
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~-~----------------  138 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR-F----------------  138 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc-c----------------
Confidence            9999999999999999999999999999999999999      9999999999998876321 1                


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQS  191 (203)
Q Consensus       161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~  191 (203)
                        .. .+..|+.+.+++++||+.|+++.|+.
T Consensus       139 --~~-~~~~g~~~~l~aal~~a~~~i~~k~~  166 (281)
T TIGR03340       139 --AQ-HRRKAYAWALAAALGTAIYSLSDKAA  166 (281)
T ss_pred             --cc-cchhHHHHHHHHHHHHHHhhhhcccc
Confidence              11 12368889999999999999998875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.71  E-value=9.2e-16  Score=133.08  Aligned_cols=152  Identities=15%  Similarity=0.160  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028844           11 MITLGKAAMSSGMS-NFVYVVYYNALGTFILLHYFIYNTYRSKGPVL--TFSLLCKFFMLGVLGICLVQIFAITGIKYSS   87 (203)
Q Consensus        11 ~~i~~k~~~~~~~~-p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~   87 (203)
                      .....|..++. .| |++++++|+.++.++....+..  +.++.++.  .+++++.++.+|+++... +...+.++++++
T Consensus        64 ~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s  139 (350)
T PTZ00343         64 YVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence            34567998886 99 9999999999998876552222  12222333  245778889999998655 445679999999


Q ss_pred             hhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchh
Q 028844           88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW  167 (203)
Q Consensus        88 a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
                      ++.++++-+++|+++++++++++|||++++      ++.+++++++|+.+.+.   .+                  .+..
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~------------------~~~~  192 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KE------------------LHFT  192 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---cc------------------chhH
Confidence            999999999999999999999999999999      99999999999998652   11                  1123


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          168 ALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       168 ~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                      ..|+++.++|+++||.|+++.||.++
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~  218 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMK  218 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999774

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.71  E-value=1.1e-16  Score=117.35  Aligned_cols=124  Identities=22%  Similarity=0.305  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028844            6 IGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIK   84 (203)
Q Consensus         6 ~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~   84 (203)
                      ++||.+.+..|...++ .||....++|+..+++ +++ ....  ++++..+.+.+++......|.++...++.+++.|++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL--GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh--ccccccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999998876 9999999999999998 555 4444  333334556777788888999877899999999999


Q ss_pred             ccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           85 YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        85 ~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      +++++.++.+.+++|+++.++++++++|+++++      +++|+++++.|+.+++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.62  E-value=3.2e-14  Score=118.17  Aligned_cols=163  Identities=21%  Similarity=0.213  Sum_probs=126.7

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~   81 (203)
                      ++..+.|+.+....|...+...++....+.|+..+.+...+...+  ++....+ ..+.+....+.+.++...++.+++.
T Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   89 (292)
T COG0697          13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGLRP-ALRPWLLLLLLALLGLALPFLLLFL   89 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccccc-cccchHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999987643667777777999998885541111  1111111 1112345667777777899999999


Q ss_pred             HhhccChhhHhhhhhhhHHHHHHHHH-HHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844           82 GIKYSSPTLASAMGNLIPGITFLLAV-FFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP  160 (203)
Q Consensus        82 gl~~t~a~~asil~~~~Pv~~~ila~-~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~  160 (203)
                      ++++++++.++.+.++.|+++.++++ ++++||++++      ++.|+.+++.|+.++...++.                
T Consensus        90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~----------------  147 (292)
T COG0697          90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG----------------  147 (292)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc----------------
Confidence            99999999999999999999999997 6779999999      999999999999988632211                


Q ss_pred             CCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          161 VSEYSN-WALGGLLLTVTCFSSATWKIFQVQSY  192 (203)
Q Consensus       161 ~~~~~~-~~lG~ll~l~aa~~~a~y~il~~~~~  192 (203)
                         +.. ...|+.+.++++++|+.|.+.+|+..
T Consensus       148 ---~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         148 ---GGILSLLGLLLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               111 46899999999999999999999876

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.57  E-value=1.4e-14  Score=106.49  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=111.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-PVLTFSLLCKFFMLGVLGICLVQIFA   79 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~lgl~g~~l~~~~~   79 (203)
                      ++++++||...++.|++++. +||..-++.|-.+..+++.. .+..  ++.+. ...+.|.|..+.+-|+-+ .+...+|
T Consensus         9 LLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~--g~~~~~~~~~~k~~lflilSGla~-glswl~Y   84 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVT--GNWQAGGEIGPKSWLFLILSGLAG-GLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhc--CceecccccCcceehhhhHHHHHH-HHHHHHH
Confidence            57899999999999999875 99999999999999988887 5554  33222 224777888888888665 8999999


Q ss_pred             HHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        80 ~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      |.+++.-.++...-+..+.|++++++++++++||++.+      +++|+++..+|+++++
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999      9999999999998764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.57  E-value=2.4e-13  Score=116.84  Aligned_cols=164  Identities=18%  Similarity=0.166  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028844            9 VGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY   85 (203)
Q Consensus         9 g~~~i~~k~~~~~~~~-p~~~~~~R~~ia~i~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~   85 (203)
                      .++.+.+....+.+.+ |..-.+.-+..-.++..+ ...+  +++ +..+..+++|++.+++|++= ..++.+...|++|
T Consensus        26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r--~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~a~~y  102 (334)
T PF06027_consen   26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR--RGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVLAYQY  102 (334)
T ss_pred             HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc--cccccchhhcchhHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence            3444455444444555 666666666555555555 3443  221 22223345677788889887 6788999999999


Q ss_pred             cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCc
Q 028844           86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYS  165 (203)
Q Consensus        86 t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (203)
                      |+.+.+.++....-+++++++++++|||.++.      |++|++++++|+.+++..|....            +++..+.
T Consensus       103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~------------~~~~~~~  164 (334)
T PF06027_consen  103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG------------SDSSSGS  164 (334)
T ss_pred             ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc------------ccCCCCC
Confidence            99999999999999999999999999999999      99999999999998875442210            0012334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          166 NWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       166 ~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                      +..+||+++++++++||+++++++++.+
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~  192 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVK  192 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5689999999999999999999998654

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.45  E-value=2.3e-12  Score=106.46  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=105.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMS--NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF   78 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~--p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~   78 (203)
                      ++++++|+.+.+..|...++ .+  +.....+|+.++.+++.+ ....  ++.  ...+.+++..+...++++....+.+
T Consensus       134 l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  208 (260)
T TIGR00950       134 LGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL--GPN--PQALSLQWGALLYLGLIGTALAYFL  208 (260)
T ss_pred             HHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCcchHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999998754 66  445666789999999888 5443  222  2336677778888999988899999


Q ss_pred             HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Q 028844           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGA  135 (203)
Q Consensus        79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv  135 (203)
                      ++.++++++++.++.+.+++|+++.++++++++|+++.+      ++.|..+.+.|+
T Consensus       209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999      999999999986

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.41  E-value=1.4e-12  Score=95.48  Aligned_cols=103  Identities=20%  Similarity=0.333  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHH-HHHHhhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHH
Q 028844           30 VYYNALGTFILLH-YFIYNTYRSKG--PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLA  106 (203)
Q Consensus        30 ~~R~~ia~i~l~~-~~~~~~~~~~~--~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila  106 (203)
                      .+|+..+.+++.. ...+  ++.++  +..+.+.+......|+++...++.++++|+++++ +.++.+.+++|+++.+++
T Consensus         2 a~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~   78 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIR--GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLS   78 (113)
T ss_pred             HHHHHHHHHHHHHHHHHH--ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHH
Confidence            5799999998888 5554  22111  1122344556667788886789999999999999 588899999999999999


Q ss_pred             HHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844          107 VFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus       107 ~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ++++|||++++      ++.|+.++++|+.++...
T Consensus        79 ~~~~~er~~~~------~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   79 WLFFKERLSPR------RWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence            99999999999      999999999999998743

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.40  E-value=1.1e-11  Score=104.90  Aligned_cols=162  Identities=15%  Similarity=0.126  Sum_probs=120.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++++||.+.+..|...  +.++.++.  |..++.+++.. ....   |+.. +.+++.+..-++.|.+ -...+.+++
T Consensus         7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~---~~~~-~~~~~~~~~g~l~G~~-w~ig~~~~~   77 (290)
T TIGR00776         7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF---VLPE-FWALSIFLVGLLSGAF-WALGQINQF   77 (290)
T ss_pred             HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH---hCCc-ccccHHHHHHHHHHHH-HHhhhhhHH
Confidence            468899999999999864  58888776  78888887776 3333   2111 1123333333333443 477889999


Q ss_pred             HHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhH----HHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 028844           81 TGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS  155 (203)
Q Consensus        81 ~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~----~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~  155 (203)
                      .++++++.+.|..+.+ +.|++..+.+.+++|||.+++      +    ++|++++++|+.++...++.+.         
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~---------  142 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA---------  142 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc---------
Confidence            9999999999999988 899999999999999999999      8    9999999999887643221100         


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          156 NIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS  191 (203)
Q Consensus       156 ~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~  191 (203)
                          +.++..+...|.++.++++++|+.|.+..|+.
T Consensus       143 ----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~  174 (290)
T TIGR00776       143 ----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF  174 (290)
T ss_pred             ----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                00000234679999999999999999999875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.33  E-value=7.6e-11  Score=99.81  Aligned_cols=128  Identities=12%  Similarity=0.073  Sum_probs=104.7

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++++|+.+.+..|...++ .+|..... -..++++.+.+ ....  ..  ....+...+...+.+|++++.+.+.+|+
T Consensus       154 l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        154 LGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQ--AG--EALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHc--cC--cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999987554 78877754 44566666666 4432  21  1223555566667899999899999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      +++++.++++++.+.+++|+++.++++++++|+++..      +++|..+.+.|++.....
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999      999999999999887643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.32  E-value=6.8e-11  Score=100.02  Aligned_cols=129  Identities=14%  Similarity=0.046  Sum_probs=107.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++++|+.+.+..|.. .. -++.....+++.++++.+.+ ....  +.......+.+.+..+..+|++++.+.+.+|+
T Consensus       156 l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~  231 (292)
T PRK11272        156 LIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLS--GERLTALPTLSGFLALGYLAVFGSIIAISAYM  231 (292)
T ss_pred             HHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHc--CCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999885 33 34566778899999888887 4443  22111123567788889999999899999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      +++++.++++++.+.+++|++++++++++++|+++..      +++|.++.+.|+.+...
T Consensus       232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999      99999999999988754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.26  E-value=4.9e-10  Score=93.31  Aligned_cols=154  Identities=14%  Similarity=0.062  Sum_probs=121.4

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG---PVLTFSLLCKFFMLGVLGICLVQI   77 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~lgl~g~~l~~~   77 (203)
                      +.+.++||..+...|.. ++ .++.++...|.+-+..+++. ....  ++++.   ...++|.+..+.+.+++- ..+..
T Consensus        13 l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~--r~~~~~~~~~~~p~~~~~~~l~a~li-~~nW~   87 (293)
T COG2962          13 LLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLL--RQWRELKQLLKQPKTLLMLALTALLI-GLNWW   87 (293)
T ss_pred             HHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCcHHHHHHHHHHHHH-HHHHH
Confidence            46789999999999995 54 99999999999999888877 4333  22221   123455666666667664 89999


Q ss_pred             HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844           78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI  157 (203)
Q Consensus        78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~  157 (203)
                      .|.++.+.-.+-++|.=.+..|++.++++++++|||+++-      |++++.++.+|+.......++             
T Consensus        88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~-------------  148 (293)
T COG2962          88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS-------------  148 (293)
T ss_pred             HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC-------------
Confidence            9999999999999999999999999999999999999999      999999999999887654332             


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS  191 (203)
Q Consensus       158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~  191 (203)
                             -.+     ..+.=|++|+.|..+-|+.
T Consensus       149 -------lpw-----val~la~sf~~Ygl~RK~~  170 (293)
T COG2962         149 -------LPW-----VALALALSFGLYGLLRKKL  170 (293)
T ss_pred             -------CcH-----HHHHHHHHHHHHHHHHHhc
Confidence                   112     1234488999999885543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.21  E-value=3.4e-10  Score=95.89  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++++|+.+.+..|...+ +.+|.....   ..+++.+.+ ....  + ......+.+.+..+...|+ ...+.+.+|+
T Consensus       162 l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~  233 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS--P-QPAMVFSLPAIIKLLLAAA-AMGFGYAAWN  233 (295)
T ss_pred             HHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh--c-CccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5788999999999999643 478876532   334444444 3332  2 1112345667777777775 5688999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      .++++.++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+.+...
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            9999999999999999999999999999999999999      99999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.20  E-value=6.6e-10  Score=96.79  Aligned_cols=130  Identities=12%  Similarity=0.146  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCC---C-CCCCHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSN-FVYVVYYNALGTFILLH-YFIYNTYRSK---G-PVLTFSLLCKFFMLGVLGICLV   75 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p-~~~~~~R~~ia~i~l~~-~~~~~~~~~~---~-~~~~~~~~~~~~~lgl~g~~l~   75 (203)
                      +.++++|+.+.+..|..... .+| ...+++...++++.+.+ ....  ++..   + ...+.. ...++..++. ..+.
T Consensus       195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la  269 (358)
T PLN00411        195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV--EKNNPSVWIIHFDIT-LITIVTMAII-TSVY  269 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH--ccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence            46789999999999987665 644 46677777777766655 4443  3211   1 112333 2334555655 4678


Q ss_pred             HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhcc
Q 028844           76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYK  142 (203)
Q Consensus        76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~  142 (203)
                      +.++++++++.+|+.++.+.+++|++++++++++++|+++..      +++|.++.+.|+.++...+
T Consensus       270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999999999999999999999999999      9999999999999876543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.13  E-value=1.7e-10  Score=98.77  Aligned_cols=102  Identities=22%  Similarity=0.290  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 028844           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP  152 (203)
Q Consensus        73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~  152 (203)
                      ++++++++.++.+|+++..+++.++.-+||..++.++..||+++.      |.++++++++|+++++..+..+       
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~-------  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ-------  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc-------
Confidence            788999999999999999999999999999999999999999999      9999999999999887543321       


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          153 SNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                            .++.......+|+++.+++|+.||+|+++-||..+
T Consensus       237 ------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~  271 (416)
T KOG2765|consen  237 ------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIG  271 (416)
T ss_pred             ------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                  01123345679999999999999999999988643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.12  E-value=2.8e-09  Score=90.41  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=100.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCCCHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSG--MSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSLLCKFFMLGVLGIC   73 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~--~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-----~~~~~~~~~~~~~~lgl~g~~   73 (203)
                      +.++++|+.+.+..|...++.  .+......+-..++.+.+.. ....  +...     ....+.+.+..++.+|++++.
T Consensus       149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~  226 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL--DGSATMIHSLVTIDMTTILSLMYLAFVATI  226 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh--cCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence            578899999999999864431  22334444445554444433 2222  2211     123467788889999999999


Q ss_pred             HHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        74 l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      +.+.+++.++++.++++++.+..++|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999      9999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.08  E-value=5.2e-09  Score=85.64  Aligned_cols=143  Identities=15%  Similarity=0.106  Sum_probs=109.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 028844           13 TLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS   92 (203)
Q Consensus        13 i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~as   92 (203)
                      -+.|..++. +.|.-.+.+|..++++++++ ++|  ..  +.+.+++++..+...|..- ...|.+||.+++..|-+.+.
T Consensus        29 s~Ak~LFP~-vG~~g~t~lRl~~aaLIll~-l~R--Pw--r~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAV  101 (292)
T COG5006          29 SFAKSLFPL-VGAAGVTALRLAIAALILLA-LFR--PW--RRRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAV  101 (292)
T ss_pred             HHHHHHccc-cChhhHHHHHHHHHHHHHHH-Hhh--HH--HhccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhh
Confidence            355666665 99999999999999999997 443  22  2456778888888888865 55678888999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHH
Q 028844           93 AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL  172 (203)
Q Consensus        93 il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l  172 (203)
                      .+.++-|+.+..++    .+|  .+      ..+-+.+++.|+.++.-. +.                 +....+..|..
T Consensus       102 AiEF~GPL~vA~~~----sRr--~~------d~vwvaLAvlGi~lL~p~-~~-----------------~~~~lDp~Gv~  151 (292)
T COG5006         102 AIEFTGPLAVALLS----SRR--LR------DFVWVALAVLGIWLLLPL-GQ-----------------SVWSLDPVGVA  151 (292)
T ss_pred             hhhhccHHHHHHHh----ccc--hh------hHHHHHHHHHHHHhheec-cC-----------------CcCcCCHHHHH
Confidence            99999999877653    122  22      556677788898877522 21                 12334578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 028844          173 LLTVTCFSSATWKIFQVQSY  192 (203)
Q Consensus       173 l~l~aa~~~a~y~il~~~~~  192 (203)
                      +.+.+..||++|++..+|.-
T Consensus       152 ~Al~AG~~Wa~YIv~G~r~g  171 (292)
T COG5006         152 LALGAGACWALYIVLGQRAG  171 (292)
T ss_pred             HHHHHhHHHHHHHHHcchhc
Confidence            99999999999999988854

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.07  E-value=8.8e-10  Score=92.69  Aligned_cols=126  Identities=17%  Similarity=0.133  Sum_probs=90.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNF----VYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQ   76 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~----~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~   76 (203)
                      ++++++|+.+.+..|...+ +.+|.    ....+.+.+.++.+.+ ....  +++. ...+.+.+......+.+...+.+
T Consensus       150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~s~l~~  225 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR--HGRS-MFPYARQILPSATLGGLMIGGAY  225 (281)
T ss_pred             HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH--hccc-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999887533 24442    2333333333222222 2111  1111 11122334455677777778899


Q ss_pred             HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844           77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (203)
Q Consensus        77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~  137 (203)
                      .+++.++++.+++.++.+.+++|+++.++++++++|+++..      +++|..+.+.|+.+
T Consensus       226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999      99999999999975

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.06  E-value=5.9e-11  Score=97.72  Aligned_cols=166  Identities=13%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844            5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI   83 (203)
Q Consensus         5 ~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl   83 (203)
                      ...+..+.++.+..+ + .||.+....|++.-.++..| .+.+  +..-.-+...|  +.+++-|+.| +.+....++++
T Consensus        46 s~ff~~~~vv~t~~~-e-~~p~e~a~~r~l~~mlit~pcliy~--~~~v~gp~g~R--~~LiLRg~mG-~tgvmlmyya~  118 (346)
T KOG4510|consen   46 SYFFNSCMVVSTKVL-E-NDPMELASFRLLVRMLITYPCLIYY--MQPVIGPEGKR--KWLILRGFMG-FTGVMLMYYAL  118 (346)
T ss_pred             HHHHhhHHHhhhhhh-c-cChhHhhhhhhhhehhhhheEEEEE--eeeeecCCCcE--EEEEeehhhh-hhHHHHHHHHH
Confidence            355566666666554 3 89999999997777666666 3332  11111111222  2345667777 44455667899


Q ss_pred             hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC-CC
Q 028844           84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP-VS  162 (203)
Q Consensus        84 ~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~-~~  162 (203)
                      +|.+-++|+++.+..|++|.+++|.++|||.++.      ..+|..+.+.|+++++-   |.+..     +.+..++ .+
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR---PpFlF-----G~~t~g~~~s  184 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR---PPFLF-----GDTTEGEDSS  184 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec---CCccc-----CCCccccccc
Confidence            9999999999999999999999999999999999      99999999999998862   22111     0011111 11


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          163 EYSNWALGGLLLTVTCFSSATWKIFQVQS  191 (203)
Q Consensus       163 ~~~~~~lG~ll~l~aa~~~a~y~il~~~~  191 (203)
                      ....+..|.+..+.+++.-|.-.|+.|++
T Consensus       185 ~~~~~~~gt~aai~s~lf~asvyIilR~i  213 (346)
T KOG4510|consen  185 QVEYDIPGTVAAISSVLFGASVYIILRYI  213 (346)
T ss_pred             cccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence            11334568888888888888777777766

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.05  E-value=1.3e-09  Score=92.44  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=99.3

Q ss_pred             chhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC---------CCH-HHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV---------LTF-SLLCKFFMLGV   69 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~-~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~---------~~~-~~~~~~~~lgl   69 (203)
                      ++++++|+.+.+..|...++ +.||.++..+....+++.+.| ....  +......         .+. ..+...+..+.
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT--EGPPFLPHGFMQAISGVNVTKIYTVSLVAAM  228 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence            56889999999999987652 499999999999999999998 5543  2111000         011 11111222333


Q ss_pred             HHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        70 ~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ......+.+++.++++++|+.+++..++.|++++++++++++|+++.+      +++|..++++|+.+....
T Consensus       229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence            222334467778999999999999999999999999999999999999      999999999999887643

specificities overlap.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.88  E-value=6.2e-08  Score=82.13  Aligned_cols=129  Identities=13%  Similarity=0.050  Sum_probs=88.3

Q ss_pred             chhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSG-MSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~-~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      +.++++|+.+.+..|....+. .++.....+-..++...+.+ .... ........+...+..+...|+. ....+.+++
T Consensus       155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~~~  231 (296)
T PRK15430        155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA-IADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH-HccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence            467899999999998863221 22233333333343333222 1110 0000111122233334445554 478899999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      .++++.+++.++.+.+++|++..++++++++|+++..      +++|..+.+.|+.++.
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999      9999999999988765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.87  E-value=1.4e-07  Score=80.18  Aligned_cols=152  Identities=17%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHH
Q 028844           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGIT  102 (203)
Q Consensus        24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~  102 (203)
                      .|..+++..+....+.-.+ ....  ++++.++.+   +......+++. .+...+.+.+++|.|...-.++-+..|+.+
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~v  104 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLF--KFPKSRKIP---LKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPV  104 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhc--cccCCCcCh---HHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHH
Confidence            3889999999998887776 3332  212222233   34556666664 788899999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 028844          103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSA  182 (203)
Q Consensus       103 ~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a  182 (203)
                      ++++++++|+|.+++      |++++++..+|+.+....+..+..           .+.....++..|+++++.+.++-+
T Consensus       105 mi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a  167 (303)
T PF08449_consen  105 MILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDA  167 (303)
T ss_pred             HHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHH
Confidence            999999999999999      999999999999887654322100           001111223359999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 028844          183 TWKIFQVQSYFLALLW  198 (203)
Q Consensus       183 ~y~il~~~~~~~~~~~  198 (203)
                      ...++|+|..+.-..-
T Consensus       168 ~~~~~qe~~~~~~~~~  183 (303)
T PF08449_consen  168 FTGVYQEKLFKKYGKS  183 (303)
T ss_pred             HHHHHHHHHHHHhCCc
Confidence            9999999988654433

; GO: 0055085 transmembrane transport

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.81  E-value=2.3e-07  Score=70.55  Aligned_cols=127  Identities=20%  Similarity=0.269  Sum_probs=104.5

Q ss_pred             chhHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC-------C----CCHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP-------V----LTFSLLCK   63 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~------~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~-------~----~~~~~~~~   63 (203)
                      +.+.++.+...+..|..++.      ..+|.++..+-...+.+++.| ....  ++.+..       +    .+.+.+..
T Consensus         6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T PF03151_consen    6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL--EGPQLSSFFSEIFGEELSSDPNFIFL   83 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHhhhhhhcchHHHHHH
Confidence            46778888999999888776      699999999999999999999 6665  332210       0    02344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (203)
Q Consensus        64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~  137 (203)
                      ++..|+++ ...+...+.-+++++|...++..+.-.+.+.++++++++|+++.+      ++.|+++++.|...
T Consensus        84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            56666665 788899999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.81  E-value=2.3e-07  Score=80.60  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=94.4

Q ss_pred             chhHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-----------CCCCHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-----------PVLTFSLLCK   63 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~------~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~-----------~~~~~~~~~~   63 (203)
                      ++++++|+...+..|..++.      ..++..+..+-..+++++++| ....  +....           ..........
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~l~  277 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF--EGKKWVPVWTNYTANMTNYTKGIIIF  277 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccccchHHHHH
Confidence            46889999999999998753      256777777778889999888 5533  21100           0111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      ..+.+.+...+.+.+.+.+++++++.++++..++.|+++.++++++++|+++..      +++|.++++.|+.+..
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence            222222223444555557999999999999999999999999999999999999      9999999999998754

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.79  E-value=3.3e-07  Score=75.90  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVV-YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~-~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      +.+++.|+.+.+..|...  ..++..... +.+..+.....+ ...  .... ...+.+.+......|+++....+.+++
T Consensus       160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~  233 (292)
T COG0697         160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLL-FFL--SGFG-APILSRAWLLLLYLGVFSTGLAYLLWY  233 (292)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH-HHh--cccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999998765  377777777 444422222222 221  1111 234567788889999998778999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      .++++.+++.++.+..++|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999      9999999999998765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.79  E-value=1.5e-07  Score=68.75  Aligned_cols=68  Identities=22%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           66 MLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      ..++++..+.+.++..++++.|.+.|-.+.++.|+++.+++++++|||++.+      |++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444667789999999999999999999999999999999999999999999      9999999999998764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.72  E-value=1.8e-07  Score=79.25  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYN---ALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF   78 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~---~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~   78 (203)
                      +++.+.|+.+.+..|..   +.||.+..+...   .+++.++.+.+ +  +.  ++. +.+.....++.|++ ....+.+
T Consensus       158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~-~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-I--LA--KPL-KKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-h--cc--cch-HHHHHHHHHHHHHH-HHHHHHH
Confidence            46788999999999974   389998855554   44444444311 1  11  111 23333445558888 4888999


Q ss_pred             HHHHhh-ccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHH----HHHHHHHHHHHHHH
Q 028844           79 AITGIK-YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKI----LGTVVSIAGAFIVS  139 (203)
Q Consensus        79 ~~~gl~-~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~----~G~~l~~~Gv~~l~  139 (203)
                      |+.|.+ +.+++.++++.+.+|+...+.+++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            999999 999999999999999999999999999999999      99    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.71  E-value=4.6e-07  Score=75.07  Aligned_cols=127  Identities=16%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844           57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (203)
Q Consensus        57 ~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  136 (203)
                      ++|+..++.+-+++- .+++.+.+.++++.+|+.-.++..+-.++|++++++++|+|++++      ||.++.+.+.|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            566778888888884 899999999999999999999999999999999999999999999      9999999999998


Q ss_pred             HHHhccCCCCCCCCCCCCCCCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844          137 IVSLYKGPPLLGFSSPSNSNIQL-PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA  195 (203)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~  195 (203)
                      ++...+....     +.+..+.. ......+...|.++.++++++-++-.++..|+++..
T Consensus        86 lv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~  140 (244)
T PF04142_consen   86 LVQLSSSQSS-----DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS  140 (244)
T ss_pred             eeecCCcccc-----ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8653221110     00000000 011234467999999999999999999999987765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.53  E-value=1.5e-06  Score=71.41  Aligned_cols=126  Identities=17%  Similarity=0.067  Sum_probs=104.9

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      +.+..+|+.+.+..|.+-+. .+-..-+..-+.+|+++.+| ....  .  ...-.+++....-...|+++..+.+.+..
T Consensus       154 l~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--a--g~~l~~p~ll~laLgvavlSSalPYsLEm  228 (292)
T COG5006         154 LGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--A--GPALFSPSLLPLALGVAVLSSALPYSLEM  228 (292)
T ss_pred             HHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--c--chhhcChHHHHHHHHHHHHhcccchHHHH
Confidence            35678999999999987543 66677778889999999999 4432  1  11224566666667888999999999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      .++++.|...-+++.+++|.+.++.++++++|+++..      ||.|+...+.+..-.
T Consensus       229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999      999999988877643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.45  E-value=3.6e-05  Score=66.11  Aligned_cols=176  Identities=14%  Similarity=0.068  Sum_probs=129.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHH-HHHHhhh--cCCCCC------CCHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMITLGKAAMSSG---MSNFVYVVYYNALGTFILLH-YFIYNTY--RSKGPV------LTFSLLCKFFMLGVL   70 (203)
Q Consensus         3 ~~~~~wg~~~i~~k~~~~~~---~~p~~~~~~R~~ia~i~l~~-~~~~~~~--~~~~~~------~~~~~~~~~~~lgl~   70 (203)
                      ...+.+++..+..|++-..+   +.|.+.++.--.+-.++... .+...+.  ++....      .++++.....+-+++
T Consensus        22 ~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i  101 (345)
T KOG2234|consen   22 VLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI  101 (345)
T ss_pred             HHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH
Confidence            45667788888889886655   77888888777777666665 3332101  111111      234456667777777


Q ss_pred             HHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 028844           71 GICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS  150 (203)
Q Consensus        71 g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~  150 (203)
                      - ++++-+++.++.+.+|+.-.+..++--+.|+++..+++++|++++      ||.++++.++|+.++.....+.. ..+
T Consensus       102 Y-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~-~a~  173 (345)
T KOG2234|consen  102 Y-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPT-GAK  173 (345)
T ss_pred             H-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCC-Ccc
Confidence            4 788889999999999999999999999999999999999999999      99999999999998863222110 000


Q ss_pred             CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844          151 SPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA  195 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~  195 (203)
                               +.....+...|....+.++++-+.-.++-.|+++..
T Consensus       174 ---------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s  209 (345)
T KOG2234|consen  174 ---------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS  209 (345)
T ss_pred             ---------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     012345667999999999999999999998888653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.43  E-value=1.7e-06  Score=64.91  Aligned_cols=70  Identities=20%  Similarity=0.408  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHH--HhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVF--FRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      .+.+|+++..+.+.++..++++.+++.|.-+.+..++++.+.++.  +++|+++.+      |++|+.+.++|+.++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            567888888999999999999999999999999999999888885  899999999      9999999999999875

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.24  E-value=1.7e-06  Score=68.92  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 028844           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP  152 (203)
Q Consensus        73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~  152 (203)
                      ++.++.|..+++..+++.++.+....--|+.+++++.+++|+...      |+++.++++.|++.+...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence            567899999999999999999999999999999999999999999      9999999999998876332          


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          153 SNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                               ++..+...|..+.+.+++.-|.|-++-|+...
T Consensus       128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG  159 (290)
T KOG4314|consen  128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIG  159 (290)
T ss_pred             ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     23445679999999999999999999988754

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.14  E-value=4.5e-06  Score=71.40  Aligned_cols=150  Identities=17%  Similarity=0.178  Sum_probs=115.4

Q ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028844           14 LGKAAMS--SGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL   90 (203)
Q Consensus        14 ~~k~~~~--~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~   90 (203)
                      ..|..++  +---|.+++..++..+.+.... -.++  ..+..+..++..+..++-+|++- ++...+-+.++++.+++.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~--~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK--LVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence            3466666  4355889999988888887776 3332  12211111333556667777775 777888899999999999


Q ss_pred             HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHH
Q 028844           91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG  170 (203)
Q Consensus        91 asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG  170 (203)
                      .-.+=+++|+++.++++++.+|+.+++      ....++....|+.+.+..+                     ..-+..|
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~e---------------------~~fn~~G  164 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVTE---------------------LSFNLFG  164 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeecc---------------------ccccHHH
Confidence            999999999999999999999999999      8888888888887654321                     2234689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 028844          171 GLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       171 ~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                      ....+.+.+..+...+++|+++.
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999883

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.86  E-value=0.00038  Score=60.20  Aligned_cols=131  Identities=16%  Similarity=0.048  Sum_probs=96.8

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 028844            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV--LTFSLLCKFFMLGVLGICLVQI   77 (203)
Q Consensus         1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~--~~~~~~~~~~~lgl~g~~l~~~   77 (203)
                      ++.++++||.+.+.-+....+ .|+.++...=-+.+.++..+ ....  +++...+  .+.+....++..++ +.+..+.
T Consensus       173 ~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il--e~~~i~~~~w~~~~~~~~v~~~~-~lf~~y~  248 (334)
T PF06027_consen  173 ALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL--ERSGIESIHWTSQVIGLLVGYAL-CLFLFYS  248 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe--ehhhhhccCCChhhHHHHHHHHH-HHHHHHH
Confidence            367899999999999988765 88888777666777777777 5544  5544332  34444333332222 3355566


Q ss_pred             HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      +.-..+++++|+...+=.-+..++..+..++++||++++.      .++|.++.++|.++....
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence            6778899999887666666788899999999999999999      999999999999886543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.0036  Score=53.28  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHH----HHHHHHhC-CCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMIT----LGKAAMSS-GMSN-FVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLV   75 (203)
Q Consensus         3 ~~~~~wg~~~i----~~k~~~~~-~~~p-~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~   75 (203)
                      .+++.|+.+..    +-|..+.. +.|. +.+..++.....+.+.. -..   +--+.+..|++..+..+=..++- .+.
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~---~lv~~~~l~~~~~kk~~P~~~lf-~~~   90 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL---GLVNFRPLDLRTAKKWFPVSLLF-VGM   90 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh---ceeecCCcChHHHHHHccHHHHH-HHH
Confidence            45666665443    45777765 2332 23334777777666665 111   11123456777666666666664 566


Q ss_pred             HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 028844           76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS  155 (203)
Q Consensus        76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~  155 (203)
                      ...-..+++|.+...-+++=+.+|+++++.-..+++.|++.+      .+..+....+|.......+-            
T Consensus        91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d~------------  152 (314)
T KOG1444|consen   91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTDL------------  152 (314)
T ss_pred             HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccccc------------
Confidence            666778899999999999999999999999999999888887      99999999988876542211            


Q ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844          156 NIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA  195 (203)
Q Consensus       156 ~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~  195 (203)
                              .. +..|..+.+..+++-+.|.+..|+-.+..
T Consensus       153 --------sf-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~  183 (314)
T KOG1444|consen  153 --------SF-NLRGYSWALANCLTTAAFVVYVKKSVDSA  183 (314)
T ss_pred             --------ee-cchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                    11 23599999999999999999999987654

>TIGR00688 rarD rarD protein

Probab=97.71  E-value=0.00097  Score=55.08  Aligned_cols=102  Identities=9%  Similarity=0.013  Sum_probs=66.7

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV-LTFSLLCKFFMLGVLGICLVQIFA   79 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~lgl~g~~l~~~~~   79 (203)
                      +.++++|+.+.+..|...+  .++......... ...+..+ ....  ....... ...++|..++..|++ ....+.++
T Consensus       152 l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~  225 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQT--DFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHh--ccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence            4678999999999988643  233222221111 1111111 1111  1111111 123477888888887 57899999


Q ss_pred             HHHhhccChhhHhhhhhhhHHHHHHHHHHH
Q 028844           80 ITGIKYSSPTLASAMGNLIPGITFLLAVFF  109 (203)
Q Consensus        80 ~~gl~~t~a~~asil~~~~Pv~~~ila~~~  109 (203)
                      +.|+++.+++.++.+.+++|+++.+++.+.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.67  E-value=0.0019  Score=54.10  Aligned_cols=117  Identities=19%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844           58 FSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (203)
Q Consensus        58 ~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  136 (203)
                      .+.+..-++.|++- ...|..++.+.++.+.+.+--+.. ++=+.+.+.++++|+|.-+.+.+  ..-..++++.++|+.
T Consensus        42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~  118 (269)
T PF06800_consen   42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVI  118 (269)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHH
Confidence            46667777777775 788999999999999999998864 77788999999999999887621  112347778888887


Q ss_pred             HHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028844          137 IVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQ  190 (203)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~  190 (203)
                      +-+..++.+.             ..++..+...|...++++.+.|..|.++.+-
T Consensus       119 lts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  119 LTSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             Hhcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            7664433210             0012345568999999999999999998554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.67  E-value=0.0014  Score=55.12  Aligned_cols=173  Identities=16%  Similarity=0.099  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHH-HHHHhhh-cCCC-C-------CC--CHHHHHHHHHHHHH
Q 028844           10 GMITLGKAAMS---SGMS----NFVYVVYYNALGTFILLH-YFIYNTY-RSKG-P-------VL--TFSLLCKFFMLGVL   70 (203)
Q Consensus        10 ~~~i~~k~~~~---~~~~----p~~~~~~R~~ia~i~l~~-~~~~~~~-~~~~-~-------~~--~~~~~~~~~~lgl~   70 (203)
                      .+.++.|.+-+   +|.|    |+.-+..-|+--..++.. .+.+++. ++.. .       ..  +.+. ..++.-+++
T Consensus        17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal~   95 (372)
T KOG3912|consen   17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPALC   95 (372)
T ss_pred             HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHHH
Confidence            56777887643   2333    555555555555566666 4444110 0000 0       00  1111 112223344


Q ss_pred             HHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 028844           71 GICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS  150 (203)
Q Consensus        71 g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~  150 (203)
                      - .....+.+.|+.+|+|+.-..+=...-+|+.+++.-+++.+++.+      ||+|+.....|++++...+-..     
T Consensus        96 D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~-----  163 (372)
T KOG3912|consen   96 D-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL-----  163 (372)
T ss_pred             H-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc-----
Confidence            3 455677889999999998888888888999999999999999999      9999999999998874321100     


Q ss_pred             CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 028844          151 SPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQ  201 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~~~~~~~  201 (203)
                            +.++-...++-..||++.+.+-+.-|.-+++-.|.+.-.-+.|.|
T Consensus       164 ------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~  208 (372)
T KOG3912|consen  164 ------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQ  208 (372)
T ss_pred             ------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHH
Confidence                  000011124567999999999999999999998888877777766

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.64  E-value=0.0031  Score=53.09  Aligned_cols=126  Identities=13%  Similarity=0.038  Sum_probs=95.9

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         3 ~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ..++.||.++..-|..   ++|+.+=...-...-...-+. .+... ...+ ....+.+.+..+...|.+. +..-.+|.
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~-~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~  229 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLA-DSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHh-cCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence            4567888888888874   377776666555544444443 22221 1111 1113456677788888886 89999999


Q ss_pred             HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      .|-++++-+.-+++.+.+|....+++.++++|+++..      |....+..-.|..+..
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999      9999999999998765

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.60  E-value=1.3e-06  Score=72.04  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHH
Q 028844           25 NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITF  103 (203)
Q Consensus        25 p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~  103 (203)
                      |..=.+..+..-+++.-| ..+|   | +..+   ..|.+.+++|++- .-.+.+...+.|||+-+....+-.-.-..+.
T Consensus        48 Pt~QtFl~Y~LLalVY~~~~~fR---~-~~~~---~~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~  119 (336)
T KOG2766|consen   48 PTSQTFLNYVLLALVYGPIMLFR---R-KYIK---AKWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAIPCVL  119 (336)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHhh---h-HHHH---HHHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence            677778888888888888 5554   3 2222   2345577777775 4455677789999999999999875555667


Q ss_pred             HHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 028844          104 LLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSAT  183 (203)
Q Consensus       104 ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~  183 (203)
                      +++|+++|.|-++.      |+.|+++|++|+..+++.+-...             +.+++.+..+||++.+++|-+||.
T Consensus       120 ~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~ag-------------d~aggsnp~~GD~lvi~GATlYaV  180 (336)
T KOG2766|consen  120 VLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAG-------------DRAGGSNPVKGDFLVIAGATLYAV  180 (336)
T ss_pred             HHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeeccc-------------cccCCCCCccCcEEEEecceeeee
Confidence            88999999999999      99999999999998875542210             112345667999999999999998


Q ss_pred             HHHHHHH
Q 028844          184 WKIFQVQ  190 (203)
Q Consensus       184 y~il~~~  190 (203)
                      -++...-
T Consensus       181 SNv~EEf  187 (336)
T KOG2766|consen  181 SNVSEEF  187 (336)
T ss_pred             ccccHHH
Confidence            8876554

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.58  E-value=0.0024  Score=54.33  Aligned_cols=130  Identities=21%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHH-HHH--HhhhcCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFI--YNTYRSKG---PVLTFSLLCKFFMLGVLGICLV   75 (203)
Q Consensus         3 ~~~~~wg~~~i~~k~~~~-~~~~p~~~~~~R~~ia~i~l~~-~~~--~~~~~~~~---~~~~~~~~~~~~~lgl~g~~l~   75 (203)
                      ++.++-|...+.-+..++ .+.++.+..++-...+.+..++ ...  .+ +-.+.   ...+...+..++...+.+ +..
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~-~~~~~~~f~~~~p~~~~~l~~~s~~~-~~g  238 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTG-EFRSAIRFISAHPSVLLYLLLFSLTG-ALG  238 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence            455666777777766664 4689999999999999888887 544  20 11111   111233445556666665 666


Q ss_pred             HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      +.+.+.-.+..++...+++..+--+++.+++.++++++++..      +|.|+++.+.|..+-..
T Consensus       239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence            677777789999999999999999999999999999999999      99999999999987553

; GO: 0055085 transmembrane transport

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.54  E-value=0.00062  Score=49.76  Aligned_cols=110  Identities=16%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++++.++||.+.++.|.+... .++..-.. |..-....+    ++          +++.     ...+.-.-.....|+
T Consensus         1 ~l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L----l~----------n~~y-----~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    1 LLLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL----LL----------NPKY-----IIPFLLNQSGSVLFF   59 (113)
T ss_pred             CeeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH----HH----------hHHH-----HHHHHHHHHHHHHHH
Confidence            578899999999999998654 44443331 322111111    11          2222     123333456678889


Q ss_pred             HHhhccChhhHhhhh-hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (203)
Q Consensus        81 ~gl~~t~a~~asil~-~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~  137 (203)
                      ..+..++-+.+.-+. ++.=++|++.++++.+|..+++      .++|+.+...|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            999999999999986 5788999999988888888888      99999999999864

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.52  E-value=0.0008  Score=49.03  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        67 lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      ..+.+..+.+.++..++++.|.+.|=.+ ..+--+.+++.++++++|+++..      |++|+.+.++|++.+..
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            3456667888899999999999887666 45778888999999999999999      99999999999998753

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.52  E-value=0.00066  Score=50.20  Aligned_cols=68  Identities=24%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        67 lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      ..+.+....+.++..++++.|.+.|=.+ ..+--+.+.+.++++++|+++..      |++|+.+.++|++.+..
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            3455567889999999999999888666 45788899999999999999999      99999999999988753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00098  Score=48.04  Aligned_cols=66  Identities=21%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           68 GVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        68 gl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      .+.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++||++..      |++|+.+.++|++.+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            345557888999999999999887544 56888899999999999999999      9999999999998764

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.43  E-value=0.0063  Score=44.24  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        69 l~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      +.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++|+++..      |++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            44456788899999999999887555 55778889999999999999999      999999999999875

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.31  E-value=0.0018  Score=46.74  Aligned_cols=65  Identities=12%  Similarity=0.066  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        69 l~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      +.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++|++++.      |++|+.+.++|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            45557888999999999999887555 45788899999999999999999      9999999999998764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.26  E-value=0.0013  Score=46.29  Aligned_cols=57  Identities=26%  Similarity=0.222  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHhhccChhhHh-hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHH
Q 028844           68 GVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVV  130 (203)
Q Consensus        68 gl~g~~l~~~~~~~gl~~t~a~~as-il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l  130 (203)
                      .+.+....+.++..++++.|.+.+= +...+..+.+.+.++++++|+++..      |++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3445577889999999999999984 5566899999999999999999999      9999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.23  E-value=0.0042  Score=52.14  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~   81 (203)
                      +++.+.|..+.++.|..   +.||.+..+-.. ++..+-...+..  ..++ +..+++.+ +-.+.|++- ...+.+++.
T Consensus       144 l~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~--~~~~-~~~~k~~~-~nil~G~~w-~ignl~~~i  214 (269)
T PF06800_consen  144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNL--FSKK-PFFEKKSW-KNILTGLIW-GIGNLFYLI  214 (269)
T ss_pred             HHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhh--cccc-cccccchH-HhhHHHHHH-HHHHHHHHH
Confidence            46777888888888773   388887776443 332222221111  1111 11122232 335667765 677899999


Q ss_pred             HhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844           82 GIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (203)
Q Consensus        82 gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  136 (203)
                      +.+..+.+.+-.+..+.+++..+.+.+++||+-++|+  -...++|+++.++|.+
T Consensus       215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAI  267 (269)
T ss_pred             hHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999977761  1223445555555553

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.02  E-value=0.023  Score=49.42  Aligned_cols=168  Identities=15%  Similarity=0.071  Sum_probs=105.1

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHH--HHHHhhhcC---CCCCCCHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLH--YFIYNTYRS---KGPVLTFSLLCKFFMLGVLGICLV   75 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~-R~~ia~i~l~~--~~~~~~~~~---~~~~~~~~~~~~~~~lgl~g~~l~   75 (203)
                      +++.++||++++-.|.. +. -| ++.-.. -..++.++.-.  ..+.  .+.   .....+.+.+..-++-|.+- ...
T Consensus        13 ~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~--~~~f~~~~~~~~~~~~~~~~l~G~~W-~iG   86 (345)
T PRK13499         13 LIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALL--LPDFWAYYSSFSGSTLLPVFLFGALW-GIG   86 (345)
T ss_pred             HHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHhcCHHHHHHHHHHHHHH-Hhh
Confidence            57889999999999983 32 33 111111 00111111110  1111  110   01123555666666666664 688


Q ss_pred             HHHHHHHhhccChhhHhhhh-hhhHHHHHHHHHHHhhhhh---hhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 028844           76 QIFAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKV---AIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS  151 (203)
Q Consensus        76 ~~~~~~gl~~t~a~~asil~-~~~Pv~~~ila~~~~~E~~---~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~  151 (203)
                      +..++.++++.+.+.+--+. .++-+...++..++++|--   +..  .+..-.+|+++.++|+.+........     +
T Consensus        87 ~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k-----~  159 (345)
T PRK13499         87 GITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLK-----E  159 (345)
T ss_pred             hhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhc-----c
Confidence            99999999999999998775 5889999999999998764   322  34447889999999998876521110     0


Q ss_pred             CCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHH
Q 028844          152 PSNSNIQLP-VSEYSNWALGGLLLTVTCFSSATWKI  186 (203)
Q Consensus       152 ~~~~~~~~~-~~~~~~~~lG~ll~l~aa~~~a~y~i  186 (203)
                          .+.++ ..++.+...|.+.++.+.+.+++|..
T Consensus       160 ----~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        160 ----RKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             ----cccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence                00000 01234567999999999999999994

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.90  E-value=0.00044  Score=57.67  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028844            7 GEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY   85 (203)
Q Consensus         7 ~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~   85 (203)
                      .-+..++..|.. ....+....+.+-..++.+.-+. +...  .....+ ..++++..+..+|++| +++|++...|+|.
T Consensus       202 f~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~i--g~~~lP-~cgkdr~l~~~lGvfg-figQIllTm~lQi  276 (346)
T KOG4510|consen  202 FGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASI--GAVQLP-HCGKDRWLFVNLGVFG-FIGQILLTMGLQI  276 (346)
T ss_pred             hhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhc--cceecC-ccccceEEEEEehhhh-hHHHHHHHHHhhh
Confidence            334556666664 23366555555555555555544 2222  222222 3456667788899998 8999999999999


Q ss_pred             cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        86 t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      --|+..+++.++.-++..+.-.++++|.+++.      .|.|.++.+...+.+..
T Consensus       277 ErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  277 ERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             hccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999      99999888877776654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.80  E-value=0.0065  Score=51.59  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhhcCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHH
Q 028844           25 NFVYVVYYNALGTFILLH-YFIYNTYRSK--GPVLTFSLLC-KFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPG  100 (203)
Q Consensus        25 p~~~~~~R~~ia~i~l~~-~~~~~~~~~~--~~~~~~~~~~-~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv  100 (203)
                      |+.++.....+=..+-.. ..... ++..  +...+|++.. ++.-.|+.+ ++...+-+++++|++.+.-+..=+..++
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~-~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~  122 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQ-CSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSIL  122 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHh-ccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHH
Confidence            677777666544333332 11110 1111  1235666544 445566664 8889999999999999999999899999


Q ss_pred             HHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 028844          101 ITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFS  180 (203)
Q Consensus       101 ~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~  180 (203)
                      |+.+++.++.-||.++.      -..-+.+..+|+.+.+ .+..                    +-+..|..++++|+++
T Consensus       123 FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT--------------------qf~i~Gf~lv~~aS~~  175 (349)
T KOG1443|consen  123 FILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST--------------------QFNIEGFFLVLAASLL  175 (349)
T ss_pred             HHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc--------------------ceeehhHHHHHHHHHh
Confidence            99999999999999998      5555666666665543 2222                    1235788888888887


Q ss_pred             HHHHHH
Q 028844          181 SATWKI  186 (203)
Q Consensus       181 ~a~y~i  186 (203)
                      -+.==.
T Consensus       176 sGlRW~  181 (349)
T KOG1443|consen  176 SGLRWA  181 (349)
T ss_pred             hhhhHH
Confidence            666433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.73  E-value=0.096  Score=45.59  Aligned_cols=136  Identities=21%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             hhHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHH--HHHHhhhcCCC----CC-CCHHHHHHH-
Q 028844            3 LVEIGEVGMI-------TLGKAAMSSGMSNFVYVVYYNA---LGTFILLH--YFIYNTYRSKG----PV-LTFSLLCKF-   64 (203)
Q Consensus         3 ~~~~~wg~~~-------i~~k~~~~~~~~p~~~~~~R~~---ia~i~l~~--~~~~~~~~~~~----~~-~~~~~~~~~-   64 (203)
                      ++.+.++.+.       +.-+.+.+.+.+|.....-.+.   +++.+.-+  +..++.++++.    .+ .+++.+.+- 
T Consensus       181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~  260 (345)
T PRK13499        181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV  260 (345)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence            4455566555       5555554456888777666665   55444432  22221011111    11 121222222 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhccChhhHhh---hh-hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844           65 ---FMLGVLGICLVQIFAITGIKYSSPTLASA---MG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (203)
Q Consensus        65 ---~~lgl~g~~l~~~~~~~gl~~t~a~~asi---l~-~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~  137 (203)
                         .+.|++- ...+.+|..|-+..+.+.+.+   +. .+.-++..+-+. ++||+-+..|++.+..++|+++.++|+.+
T Consensus       261 l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l  338 (345)
T PRK13499        261 LLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI  338 (345)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence               4444443 667788888888887666655   55 566677777777 59999887677788889999999999988


Q ss_pred             HHh
Q 028844          138 VSL  140 (203)
Q Consensus       138 l~~  140 (203)
                      +..
T Consensus       339 ig~  341 (345)
T PRK13499        339 VGL  341 (345)
T ss_pred             Hhh
Confidence            764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.69  E-value=0.0041  Score=53.08  Aligned_cols=72  Identities=25%  Similarity=0.510  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ....|+....++..+.+.++.+.|++.-+-+..+.-++.++++..++|||++++      .+.|..+++.|..+++..
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            345565555677788889999999999999999999999999999999999999      999999999999877643

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.62  E-value=0.005  Score=52.89  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=94.6

Q ss_pred             hhHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-H-HHHHhhhcCCC-----CCCCHHHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMITLGKAAMS---SGMSNFVYVVYYNALGTFILL-H-YFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGI   72 (203)
Q Consensus         3 ~~~~~wg~~~i~~k~~~~---~~~~p~~~~~~R~~ia~i~l~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~lgl~g~   72 (203)
                      .+.+..+.-.++.|..+.   +.+|++.+..+---++.+.++ | ....  +....     ...+... ....+.+++. 
T Consensus       170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~sv~~-  245 (316)
T KOG1441|consen  170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV--EGNKFVGFLTAPWFVTF-LILLLNSVLA-  245 (316)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh--cccceeeeeccccchhh-HHHHHHHHHH-
Confidence            345566677788888773   359999999999999999999 7 4443  22211     1223332 3334444544 


Q ss_pred             HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      .+.+...+.-+..++|-+=++....==+++...++++++|+++..      +..|..+++.|+.+-..
T Consensus       246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence            777888999999999988888877666667778899999999999      99999999999987653

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.49  E-value=0.023  Score=42.97  Aligned_cols=103  Identities=22%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhh-hHHH
Q 028844           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNL-IPGI  101 (203)
Q Consensus        24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~-~Pv~  101 (203)
                      ||..-++.-+..+.+.+.. ....  +++...+.. +.-++...-|++| .....+.....+..+++++..+.-. +-+.
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~--~~~~~~~~~-~~p~w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~  104 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLIT--GRPSLASLS-SVPWWAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVAGQLIA  104 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHh--cccccchhc-cCChHHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            5999999999999999988 5554  332221111 1112344467777 7777888889999999998877654 5555


Q ss_pred             HHHHHHH----HhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844          102 TFLLAVF----FRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (203)
Q Consensus       102 ~~ila~~----~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  136 (203)
                      ..++-++    .-|+|++.+      |++|+.+.++|+.
T Consensus       105 sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~  137 (138)
T PF04657_consen  105 SLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI  137 (138)
T ss_pred             HHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence            5555554    245677777      9999999999985

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.023  Score=46.78  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        59 ~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      ..+..+.++|+.+ .++|.+.+.-+.+-+|-..|++..+--+|+.+.+++++..+++.+      ||+|.++.+.|...=
T Consensus       239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            4556677777776 888999999999999999999999999999999999999999999      999999999998764


Q ss_pred             H
Q 028844          139 S  139 (203)
Q Consensus       139 ~  139 (203)
                      .
T Consensus       312 ~  312 (337)
T KOG1580|consen  312 V  312 (337)
T ss_pred             h
Confidence            3

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.67  E-value=0.089  Score=46.01  Aligned_cols=134  Identities=11%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             chhHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHH-HHHHhhhc-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028844            2 ALVEIGEVGMITLGKAAMSS---GMSNFVYVVYYNALGTFILLH-YFIYNTYR-SKGPVLTFSLLCKFFMLGVLGICLVQ   76 (203)
Q Consensus         2 l~~~~~wg~~~i~~k~~~~~---~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~lgl~g~~l~~   76 (203)
                      +++++.||.+.++.|.-.++   .+|--.+-.+=-++..++++| .+..+.-+ ++.+-.+..+...+++.+++|+.+.-
T Consensus       253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD  332 (416)
T KOG2765|consen  253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD  332 (416)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence            46889999999999886554   255445555555667778887 54432111 11111233344556788899999999


Q ss_pred             HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ++|..|.-.|++-.+++=++++--..++.-.++.+.+++..      .++|.+..++|-+++...
T Consensus       333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence            99999999999999998877543344555555656677777      999999999999887644

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=0.013  Score=50.00  Aligned_cols=72  Identities=25%  Similarity=0.453  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ....|++...++...-|.+..+.|++.-+-+-++.-++.++++..+++||++.+      ..+|.+++++|-.+++..
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe
Confidence            345566655666777777888899999999999999999999999999999999      999999999999887643

>TIGR00803 nst UDP-galactose transporter

Probab=94.78  E-value=0.12  Score=41.80  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (203)
Q Consensus        73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~  136 (203)
                      ...+.+..+-+++.++..-+....+.++++.+++.++++|+++..      ++.|..+.+.|+.
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            556677888899999999999999999999999999999999999      9999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.62  E-value=0.48  Score=39.22  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 028844           72 ICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS  151 (203)
Q Consensus        72 ~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~  151 (203)
                      .-+....-+.++|+.|=.++.+=-+.-|+=++++++.+.|++-+++      |..-+++..+|+.+...-++.. .    
T Consensus        95 YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv-~----  163 (337)
T KOG1580|consen   95 YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKV-G----  163 (337)
T ss_pred             HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhcccccc-C----
Confidence            4567778889999999887777778889999999999999999999      9999999999998765322221 1    


Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          152 PSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                               +.+......|.++++++--.=+.-...|.|.+.
T Consensus       164 ---------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira  196 (337)
T KOG1580|consen  164 ---------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRA  196 (337)
T ss_pred             ---------CCcccccchHHHHHHHHHHhcccchhHHHHHHH
Confidence                     134455678999998887666666666666543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.27  E-value=0.0035  Score=51.69  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITG   82 (203)
Q Consensus         3 ~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~g   82 (203)
                      +-++.||+...+...-   +-+|.+=+.---.-|.++-+..++.     ..+..+.+.+.--++-|++- ...|..++.+
T Consensus         9 ~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-----~~p~~T~~~~iv~~isG~~W-s~GQ~~Qfka   79 (288)
T COG4975           9 LPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-----VSPELTLTIFIVGFISGAFW-SFGQANQFKA   79 (288)
T ss_pred             HHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-----ecCccchhhHHHHHHhhhHh-hhhhhhhhhh
Confidence            4577898877765331   2344443322222222222222221     12334555555555556554 6789999999


Q ss_pred             hhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHH---HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 028844           83 IKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKIL---GTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ  158 (203)
Q Consensus        83 l~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~---G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~  158 (203)
                      +++.++++|.-+.+ ++-+-+.+++++.++|.-+..+     .++   ++++.++|+.+-+..+..         |  + 
T Consensus        80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~---------n--k-  142 (288)
T COG4975          80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRN---------N--K-  142 (288)
T ss_pred             eeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeeccc---------c--c-
Confidence            99999999998865 7888899999999999887661     233   344555555543322110         0  0 


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 028844          159 LPVSEYSNWALGGLLLTVTCFSSATWKIFQ  188 (203)
Q Consensus       159 ~~~~~~~~~~lG~ll~l~aa~~~a~y~il~  188 (203)
                       +.++.++.-.|...++.+.+.|-.|.++.
T Consensus       143 -~~~~~~n~kkgi~~L~iSt~GYv~yvvl~  171 (288)
T COG4975         143 -EEENPSNLKKGIVILLISTLGYVGYVVLF  171 (288)
T ss_pred             -cccChHhhhhheeeeeeeccceeeeEeee
Confidence             01223345577777777777777776653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.13  E-value=0.2  Score=42.67  Aligned_cols=109  Identities=12%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh
Q 028844           22 GMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN   96 (203)
Q Consensus        22 ~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~   96 (203)
                      .+++.++.+.-.+..++.-......  .....     .+.+++.+..++++..+| +..|.+.++-++.-++-.-+.++.
T Consensus       199 k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  199 KVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             CccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence            4788888887777766655542221  11111     234667778888899988 888899999999888888788888


Q ss_pred             hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        97 ~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      +==++..+++.+.++.+++..      ||.|+.+.+.|+.+=.
T Consensus       276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence            888899999999999999999      9999999999997644

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.00  E-value=1.8  Score=33.27  Aligned_cols=109  Identities=18%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHH
Q 028844           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGI  101 (203)
Q Consensus        24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~  101 (203)
                      +|+.-.+..+..+.+++.. .+..  +++.......+.-++...-|++| ..+-..-.......+++....+ ..-+-+.
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~--~~~~~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~  109 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIK--QGHPGLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM  109 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh--cCCCchhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence            6999999999999998887 5554  33332221122223334445555 4444444555666666555444 3344444


Q ss_pred             HHHHHHH-HhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844          102 TFLLAVF-FRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus       102 ~~ila~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      ..++-.+ +++++   +|..+..+++|+.+.++|++++
T Consensus       110 glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         110 GLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            4444333 22221   2233444999999999996554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.26  E-value=8.2  Score=33.13  Aligned_cols=145  Identities=17%  Similarity=0.156  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh--hhHHH
Q 028844           24 SNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN--LIPGI  101 (203)
Q Consensus        24 ~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~--~~Pv~  101 (203)
                      +|..+.+.+-..+.++-.. +..  .++.. ....+.|......++.. .+...+.+.+++|.+=-.-.+-=+  +.|+.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~-~l~--~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYA-MLK--WWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHh--ccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            4566666666666555443 332  22222 22233445666777765 788899999999987544444433  56655


Q ss_pred             HHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 028844          102 TFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSS  181 (203)
Q Consensus       102 ~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~  181 (203)
                        ++..+..+.|.+..      +-+-..+.-.|+.+....+..+ +.           ......+...|.+++...-+.=
T Consensus       125 --lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-----------~~~g~~ns~~G~~Ll~~~L~fD  184 (327)
T KOG1581|consen  125 --LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-----------SKSGRENSPIGILLLFGYLLFD  184 (327)
T ss_pred             --HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-----------cccCCCCchHhHHHHHHHHHHH
Confidence              67788888888888      8888888888887655443322 00           0112235678999888888877


Q ss_pred             HHHHHHHHHHHH
Q 028844          182 ATWKIFQVQSYF  193 (203)
Q Consensus       182 a~y~il~~~~~~  193 (203)
                      +.-+..|.++.+
T Consensus       185 gfTn~tQd~lf~  196 (327)
T KOG1581|consen  185 GFTNATQDSLFK  196 (327)
T ss_pred             hhHHhHHHHHhc
Confidence            777777777665

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=91.10  E-value=0.83  Score=38.63  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Q 028844           54 PVLTFSLLCKFFMLGVLGICLVQIFAITGIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSI  132 (203)
Q Consensus        54 ~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~-t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~  132 (203)
                      ++.+.|++.....  .+  +..+.+-++++++ ++...=-++=+-.++.++++++++.+.|-+.+      |+..+++.-
T Consensus        60 ~kiplk~Y~i~V~--mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT  129 (330)
T KOG1583|consen   60 PKIPLKDYAITVA--MF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT  129 (330)
T ss_pred             CCCchhhhheehh--ee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence            5566666554332  22  3445666678877 45555555556788999999999999998888      999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          133 AGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF  193 (203)
Q Consensus       133 ~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~  193 (203)
                      +|+++-...+.++...  .+++--+.++......|.+|..++..|-+.-|...+.|.+..+
T Consensus       130 iGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~  188 (330)
T KOG1583|consen  130 IGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ  188 (330)
T ss_pred             hhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876655443221  0111001111122235789999999999998888888877654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.03  E-value=0.25  Score=41.06  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Q 028844           55 VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAG  134 (203)
Q Consensus        55 ~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~G  134 (203)
                      +.++..+.. .+-|++- ...+.+++.+-+..+.+++=-+..+..+...+-+.+++|||-++|++  ...++|+++.++|
T Consensus       204 ~~~K~t~~n-ii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvg  279 (288)
T COG4975         204 RFNKYTWLN-IIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVG  279 (288)
T ss_pred             chHHHHHHH-HhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHH
Confidence            344445444 4567765 67789999999988888887888888889999999999999998822  2235677777777


Q ss_pred             HHHHH
Q 028844          135 AFIVS  139 (203)
Q Consensus       135 v~~l~  139 (203)
                      +.++.
T Consensus       280 ai~lg  284 (288)
T COG4975         280 AILLG  284 (288)
T ss_pred             hhhhh
Confidence            76653

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.98  E-value=1.4  Score=37.23  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC--CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhh
Q 028844           22 GMSNFVYVVYYNALGTFILLH-YFIYNTYRS--KG---PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMG   95 (203)
Q Consensus        22 ~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~--~~---~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~   95 (203)
                      +.+..+++++.+.++.+.++. ....  ..-  .+   .+.++|.....++.++.| ++.+.+...=++.-+|..|+.++
T Consensus       217 ~~ss~EmvfySy~iG~vflf~~mvlT--ge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvT  293 (367)
T KOG1582|consen  217 PASSSEMVFYSYGIGFVFLFAPMVLT--GELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVT  293 (367)
T ss_pred             CCCcceEEEeeecccHHHHHHHHHhc--ccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHH
Confidence            355677888888888888876 5443  110  01   123566666777767666 66666666667777899999999


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           96 NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        96 ~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      ..---.|.++++++|.++++.+      ...|..+.+.|+.+=..
T Consensus       294 TaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  294 TARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence            8888899999999999999999      89999999999987443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.72  E-value=0.56  Score=39.63  Aligned_cols=89  Identities=15%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 028844           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ  158 (203)
Q Consensus        79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~  158 (203)
                      -+.-++|.+++---+==.++-+|+.+++++++|+|-+..      -..+..+.+.|-.+=+  +..              
T Consensus       119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv--dqE--------------  176 (347)
T KOG1442|consen  119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV--DQE--------------  176 (347)
T ss_pred             cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehheecc--ccc--------------
Confidence            345677777665544456788899999999999999988      6666666666654311  111              


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844          159 LPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS  191 (203)
Q Consensus       159 ~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~  191 (203)
                        +..+.-...|.++.+.|.++-|...+..||.
T Consensus       177 --~~~~~ls~~GvifGVlaSl~vAlnaiytkk~  207 (347)
T KOG1442|consen  177 --GSTGTLSWIGVIFGVLASLAVALNAIYTKKV  207 (347)
T ss_pred             --cccCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence              1123334589999999999999999998864

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.36  E-value=2  Score=35.38  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 028844           77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN  156 (203)
Q Consensus        77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~  156 (203)
                      ..--.+++|.+...-+++-+++-+.++..-..+|+.|++..      .....++.+..-+.-...+...           
T Consensus        83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~-----------  145 (309)
T COG5070          83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQA-----------  145 (309)
T ss_pred             HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhH-----------
Confidence            33446899999999999999999999999999999999998      8888877777665543222110           


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844          157 IQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA  195 (203)
Q Consensus       157 ~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~  195 (203)
                         ........+-|.+++...+++-+.|....|+-.+++
T Consensus       146 ---~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt  181 (309)
T COG5070         146 ---SAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT  181 (309)
T ss_pred             ---HHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence               000112345699999999999999999988876653

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=87.21  E-value=0.92  Score=32.75  Aligned_cols=115  Identities=15%  Similarity=0.103  Sum_probs=69.8

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (203)
Q Consensus         1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~   80 (203)
                      ++.+.+.||.+.++.|.+.. +.+...-.. |-.-       ...+  +-+. .-.+++.+..+. +-..    ...+|+
T Consensus         8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~-------~~lq--e~~t-l~l~w~Y~iPFl-lNqc----gSaly~   70 (125)
T KOG4831|consen    8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIM-------IALQ--EMKT-LFLNWEYLIPFL-LNQC----GSALYY   70 (125)
T ss_pred             HHHHHHHHccccHHHHHHHh-hHhhccCch-HHHH-------HHHH--HHHH-HHHhHHHHHHHH-HHHh----hHHHHH
Confidence            36788999999999998754 233222111 1000       1111  1111 113454444432 2233    356677


Q ss_pred             HHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           81 TGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        81 ~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      .-++.++-+.|.-+.+ +.=.|+++.+..+..|....+      .++|..+...|+.+.
T Consensus        71 ~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   71 LTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence            8888999888887765 677788888877655555555      889999998888653

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=86.22  E-value=6.6  Score=32.43  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhh
Q 028844           23 MSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP----VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNL   97 (203)
Q Consensus        23 ~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~----~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~   97 (203)
                      ..-++..++...++..+++. .++.  +.+...    ..+...+..+++-|+.. ..-..+-.+-++-++.+.-+..-++
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~--edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGAL  259 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLF--EDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGAL  259 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHh--ccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHh
Confidence            66788899999999999887 5554  332211    12333445667777765 4445666677888888888888888


Q ss_pred             hHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           98 IPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        98 ~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      .-.-.++-+.++++|+.+..      ++..+++++..-.+-..
T Consensus       260 NKlp~alaGlvffdap~nf~------si~sillGflsg~iYav  296 (309)
T COG5070         260 NKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV  296 (309)
T ss_pred             hhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence            77777788899999999999      99999999887666543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.18  E-value=6.2  Score=33.91  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC----CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844           11 MITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRS----KGP-VLTFSLLCKFFMLGVLGICLVQIFAITGI   83 (203)
Q Consensus        11 ~~i~~k~~~~~-~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~----~~~-~~~~~~~~~~~~lgl~g~~l~~~~~~~gl   83 (203)
                      ..+..|...+. +.+-+.+.++..+.+...+.. .++.+ +..    ... -.+...+..+.+-+++| ..-.++.++-.
T Consensus       172 ~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~g-e~~~l~~~~~~~~~~~~~~~~~lScv~g-f~isy~s~~ct  249 (314)
T KOG1444|consen  172 FVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITG-ELDALSLNFDNWSDSSVLVVMLLSCVMG-FGISYTSFLCT  249 (314)
T ss_pred             HHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhc-chHHHHhhcccccchhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            34445555543 477788888888888777776 44431 111    001 11234455666666676 55567777888


Q ss_pred             hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844           84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (203)
Q Consensus        84 ~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~  139 (203)
                      +.+|+...++.-...-..+.+...++++++.++.      ..+|+.+++.|-+.-.
T Consensus       250 ~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  250 RVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             hhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            8888888888875565666666677788999999      9999999999987754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=86.18  E-value=16  Score=31.22  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHH----H-HHHHhhhcC--CCCCCCHHHHHH---------HH
Q 028844            3 LVEIGEVGMITLG-KAAMSSGMSNFVYVVYYNALGTFILL----H-YFIYNTYRS--KGPVLTFSLLCK---------FF   65 (203)
Q Consensus         3 ~~~~~wg~~~i~~-k~~~~~~~~p~~~~~~R~~ia~i~l~----~-~~~~~~~~~--~~~~~~~~~~~~---------~~   65 (203)
                      +++++-+.-++.- |.....+++|...+.+.-..+..++.    | .+... .+.  ..++-.+.+|..         .+
T Consensus       183 iaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~-~~sfS~~~~g~~eD~~~~~~~~~e~p~l  261 (372)
T KOG3912|consen  183 IAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS-GDSFSCNPRGVLEDWGDAFAALQESPSL  261 (372)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec-CCcCcCCCCcchhhHHHHHHHhcCCchh
Confidence            4566666666654 33333469999999999887744443    2 22210 111  112222333332         12


Q ss_pred             HHHHHHHHHHHHHHHH-H---hhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           66 MLGVLGICLVQIFAIT-G---IKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        66 ~lgl~g~~l~~~~~~~-g---l~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      ..++.+......+|+. |   -++.++++=.++-.+-..+..+++.....|+++.-      |+.|.++-..|+.+-
T Consensus       262 ~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~Gi~lY  332 (372)
T KOG3912|consen  262 AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMGIILY  332 (372)
T ss_pred             HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence            3334443333333332 3   34567777778878777888888999999999999      999999999999864

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=85.79  E-value=13  Score=32.01  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC-------CCC----HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028844           23 MSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP-------VLT----FSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL   90 (203)
Q Consensus        23 ~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~-------~~~----~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~   90 (203)
                      -+|.+..+.=.-.-.+.++| .+..  |+....       ..+    .+....+.+-|+.. ++--...+.=+..|+.-.
T Consensus       195 ~~P~~ti~~l~p~M~~~Ll~~~l~f--EG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEflLl~~Ts~lt  271 (349)
T KOG1443|consen  195 RNPIDTIFHLQPWMSIGLLPLSLLF--EGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFLLLSRTSSLT  271 (349)
T ss_pred             CCCeeeHHHhhhHHHHHHHHHHHHH--cccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHheeeecccee
Confidence            45777766666566666666 4444  332110       111    12222222222222 222222333345566655


Q ss_pred             HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844           91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (203)
Q Consensus        91 asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l  138 (203)
                      -++..-.-=+.+.+++....+|+++..      .+.|..++..|+..=
T Consensus       272 lSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  272 LSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             eeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            555555566778899999999999999      999999999999764

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=81.83  E-value=12  Score=32.70  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhh--hhhhccccchhHHHHHHHHHH
Q 028844           57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRME--KVAIRSRSSQAKILGTVVSIA  133 (203)
Q Consensus        57 ~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E--~~~~~~~~~~~~~~G~~l~~~  133 (203)
                      +...+....+.|++= ......|-.+++|.+.+...-+ ..+.-++-.++-.++.++  .+ ..+..++..++|++++++
T Consensus        69 ~~~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~Li  146 (344)
T PF06379_consen   69 PASTLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLI  146 (344)
T ss_pred             ChhHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHH
Confidence            344555566666664 4556778889999888775443 456656665554444332  11 112345668999999999


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 028844          134 GAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIF  187 (203)
Q Consensus       134 Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il  187 (203)
                      |+.+....+...         +.+.++..++.+.-+|.+.++.|.+.-|++.+-
T Consensus       147 GIai~g~AG~~K---------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g  191 (344)
T PF06379_consen  147 GIAICGKAGSMK---------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG  191 (344)
T ss_pred             HHHHHhHHHHhh---------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999875332110         001111123345669999999999988888764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.75
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.72

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.75  E-value=2.3e-08  Score=74.71  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844           66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (203)
Q Consensus        66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~  141 (203)
                      ++++++..+++.++..++++.+++.+..+ .++.|++++++++++++|+++..      +++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            57777888999999999999999999888 79999999999999999999999      999999999999988754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.72  E-value=5.2e-08  Score=70.00  Aligned_cols=69  Identities=19%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844           66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (203)
Q Consensus        66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~  140 (203)
                      +.++++..+++.++..++++.|.+.+..+ ..+.|++++++++++++|+++..      |++|+.+.++|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            56677778899999999999999999888 78999999999999999999999      99999999999998864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00