Citrus Sinensis ID: 028852

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccHHHHHHcccccccccccEHHHHHccHHccccccccccccHcHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLQQhhhqssqidrlsiddfeveddvrpdfpcpycyedfdiaslcshledehsceskvtvcpicsVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVtstedtsaksaapthmwktsfdpslshEEREKRIRQGAGRASFVQDLLLSTLLID
Flexible Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLqqhhhqssqidrlsIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLqhghlfklqrrRRLRRVAIPSsqalsllgrDLREAHLQVLLGeaeeisksvvtstedtsaksaapthmwktsfdpslshEEREKRirqgagrasfvqdlllstllid
Low Complexity Region (SEG)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQrrrrlrrVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID
Disordered region (IsUnstruct)
******************************RLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG****************************************************FVQDLLLSTL***
Disordered Region (DISOPRED)
***DFWTSRL*************************DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQH*******************************************************************************************SFVQDLLLSTLLI*
Disordered Region (DISEMBL)
MDSDFWTSRLAAAKR**************DRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHL*********VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEIS*****************THMWKTSF***************GAGRASFVQDLLLSTLLID
Disordered Region (DISPRO)
****FWTSRLAAAKRQYTLQQHHH**SQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR***************LGRDLREAHLQVLLGEAEEISKSVV***********************************QGAGRASFVQDLLLSTLLID
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q688X9	226	Protein DEHYDRATION-INDUC	yes	no	0.965	0.862	0.489	3e-55
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	1.0	0.824	0.497	2e-49
Q5QMP3	246	Protein DEHYDRATION-INDUC	no	no	0.990	0.813	0.435	3e-43
Q84J70	223	Protein DEHYDRATION-INDUC	yes	no	0.955	0.865	0.343	2e-28
Q9FJ17	211	Protein DEHYDRATION-INDUC	no	no	0.811	0.777	0.396	2e-28
Q6NM26	222	Protein DEHYDRATION-INDUC	no	no	0.648	0.590	0.441	3e-28
Q39083	206	Protein DEHYDRATION-INDUC	no	no	0.653	0.640	0.419	6e-27
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.752	0.652	0.359	1e-24
Q8VXU6	224	Protein DEHYDRATION-INDUC	no	no	0.821	0.741	0.4	6e-23
O04259	214	Protein DEHYDRATION-INDUC	no	no	0.331	0.313	0.417	5e-13

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score =  214 bits (545), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 144/233 (61%), Gaps = 38/233 (16%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+ W SRLAAAKR Y  Q  H      DR  +++ +++++VRP+F CPYCYED D+ S
Sbjct: 1   MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDVVS 55

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC+HLE+EH  E     CPICS K+A+DML+HIT+QHG+LFK   RRRLRR  IP SQAL
Sbjct: 56  LCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQAL 113

Query: 121 SLLGRDLREAHLQVLLG-------------------------------EAEEISKSVVTS 149
           SLL RDLREAHLQVLLG                               + EE SK  ++ 
Sbjct: 114 SLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISI 173

Query: 150 TEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
            +D S     P   W +S D SL+ EERE++ +Q + RA+FVQDLLL+TL  D
Sbjct: 174 PDDASVIKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD 226

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/245 (49%), Positives = 150/245 (61%), Gaps = 43/245 (17%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQ-------------IDRLSIDDFEVEDDVRPDF 47
           MDSD W SRL AAKRQY LQ+  +                 +DR   DD E ED+VRPDF
Sbjct: 1   MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDF 60

Query: 48  PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR 107
           PCPYCYED DI SLC+HLEDEH  ESKV  CP+CS ++++D+L HITLQH +LF+LQR  
Sbjct: 61  PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHH 120

Query: 108 RLRRVAIPSSQALSLLGRDLREAHLQVLLG-----------------------------E 138
           RLRRVA+PS+ ALSL GRDL+E +L+VLLG                             E
Sbjct: 121 RLRRVAVPSNHALSLGGRDLQETYLKVLLGNSSRSSGTNAASSVTDSLLSSLVLNLSSSE 180

Query: 139 AEEISK-SVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLS 197
           AE+ +K S +   E+   K   P+  WK S D +LS EERE+R R+ A R+SFVQ LL+S
Sbjct: 181 AEDTAKFSALAVVENNWFKRTLPSKTWKASSDSNLSQEERERRRRRAAVRSSFVQHLLVS 240

Query: 198 TLLID 202
           TL  D
Sbjct: 241 TLFDD 245

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 134/248 (54%), Gaps = 48/248 (19%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDD---------------VRP 45
           MDS+ W S LAAAKR Y  Q  H        +   + E+EDD                 P
Sbjct: 1   MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWP 60

Query: 46  DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
           D  CPYCYED DIASLC+HLE++H  E   + CPIC  K+ RDML+HIT+QHG+LFK   
Sbjct: 61  DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFK--S 118

Query: 106 RRRLRRVAIPSSQALSLLGRDLREAHLQVLLG---------------------------- 137
            RR+RR  IP SQALSLL RDLR+A LQ LLG                            
Sbjct: 119 GRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGF 178

Query: 138 ---EAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDL 194
              ++EE SK+ V   +DTS     P   W++  D SL+ EERE++ +Q   RA+FVQ L
Sbjct: 179 STLDSEERSKAPVPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGL 238

Query: 195 LLSTLLID 202
           +LSTL  D
Sbjct: 239 VLSTLFED 246

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 37/230 (16%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query: 121 SLLGRDLREAHLQVLLG--------------EAEEISKSVVTSTEDT-----SAKSAAPT 161
           S+L R+  + + Q L G               A+ +  S ++   D      S  SA   
Sbjct: 116 SILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFISPIADGFFTTESCISAETG 175

Query: 162 HMWKTSFD---------PSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
            + KT+            SLS E+ +++++    R+ FV++LL ST+L D
Sbjct: 176 PVKKTTIQCLPEQNAKKTSLSAEDHKQKLK----RSEFVRELLSSTILDD 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 25/189 (13%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           L + D E EDD++ +F CP+C ++FDI  LC H++  H  E+K  VCP+C+ KV  D++ 
Sbjct: 28  LYLGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVG 87

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTS-- 149
           HIT QHG++FK+QRRRRLR+    SS  L+ L ++LREA+LQ L G +  I  S + S  
Sbjct: 88  HITTQHGNVFKVQRRRRLRKGGY-SSTYLT-LKKELREANLQSLGGSSTFIPSSNIDSDP 145

Query: 150 ---------------TEDTSAKSAAPTHMWKTSF-DPSLSHEEREKRIRQGAGRASFVQD 193
                          TE  S    +P    K+     S S+E++EK     A ++ FV+ 
Sbjct: 146 LLSSFMFKPPSAIPITEGDSVAQVSPKDTSKSKIQQESFSNEDQEK-----AKKSKFVRG 200

Query: 194 LLLSTLLID 202
           LL ST+L D
Sbjct: 201 LLWSTMLED 209

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 5/136 (3%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQS--ML 115

Query: 121 SLLGRDLREAHLQVLL 136
           S+L R+  + + Q L 
Sbjct: 116 SILKREFPDGNFQSLF 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 11/143 (7%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           +  ++ + +DD + +F CP+C E +DI  LC H++DEH+ ESK  VCP+CS+KV  D+++
Sbjct: 20  MGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA 79

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISKSVVTSTE 151
           HITL HG LFKLQR+R+ R+    S+  LSLL ++LRE  LQ LLG          TS  
Sbjct: 80  HITLHHGSLFKLQRKRKSRKSGTNST--LSLLRKELREGDLQRLLG---------FTSRN 128

Query: 152 DTSAKSAAPTHMWKTSFDPSLSH 174
            + A S  P  +  +   P+ S 
Sbjct: 129 GSVASSVTPDPLLSSFISPTRSQ 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 29/181 (16%)

Query: 47  FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
           + CP+C EDFD  + C H++DEH+ E+K  VCPIC+ +V  D++ H+T+QHG  FK+QRR
Sbjct: 54  YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113

Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLGEAEEISK-----------------SVVTS 149
           RR+R+++  S   LSLL +DLR+  LQ  LG +  +S                   V   
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSYVSNPPAAAPDPFLSSLICSLPVAEP 173

Query: 150 TEDTSAKSAAPTHMWKTSFD--------PSLSHEEREKRIRQGAGRASFVQDLLLSTLLI 201
           ++D  + S+    +     D        PSLS +++++R    A R+ FV+ L+LST+  
Sbjct: 174 SKDLHSDSSDNNFLLNKFPDDKTAERAEPSLSEKDQKER----AQRSKFVRGLVLSTIFE 229

Query: 202 D 202
           D
Sbjct: 230 D 230

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 24/190 (12%)

Query: 35  DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHIT 94
           +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K  VCP+C+ +V  D++ HIT
Sbjct: 35  EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94

Query: 95  LQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG-----------EAEEIS 143
            QH + FK+QRRRRLRR    SS  L+ L ++LREA+LQ LLG           +++ + 
Sbjct: 95  TQHANFFKVQRRRRLRRGGY-SSTYLA-LKKELREANLQSLLGGSSSFTSSTNIDSDPLL 152

Query: 144 KSVV---TSTEDTSAKSAAPTHMW----KTSFDPSLSHEEREKRI----RQGAGRASFVQ 192
            S +    S   ++ KSA P  +     K S   SL  + +E  +    ++ A ++ FV+
Sbjct: 153 SSFMFNSPSVNQSANKSATPVTVGNAATKVSIKESLKRDIQEAPLSGEDQEKAKKSEFVR 212

Query: 193 DLLLSTLLID 202
            LLLST+L D
Sbjct: 213 GLLLSTMLED 222

Arabidopsis thaliana (taxid: 3702)

>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 47/67 (70%)

Query: 36  DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
           +FE +D++  D+PCP+C +D+D+  LC H+++EH  ++   +CP+CS +V   M+ HIT 
Sbjct: 32  EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91

Query: 96  QHGHLFK 102
           QH  +FK
Sbjct: 92  QHRDVFK 98

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
225443618	231	PREDICTED: protein DEHYDRATION-INDUCED 1	0.995	0.870	0.745	3e-88
255536745	231	conserved hypothetical protein [Ricinus	0.945	0.826	0.765	3e-87
356521402	233	PREDICTED: protein DEHYDRATION-INDUCED 1	0.985	0.854	0.732	9e-84
217075142	234	unknown [Medicago truncatula] gi|3884911	0.995	0.858	0.697	3e-81
356548672	237	PREDICTED: protein DEHYDRATION-INDUCED 1	0.985	0.839	0.707	7e-80
449433818	199	PREDICTED: protein DEHYDRATION-INDUCED 1	0.975	0.989	0.74	3e-79
192910804	230	fiber protein Fb2 [Elaeis guineensis]	0.990	0.869	0.620	6e-68
294463922	229	unknown [Picea sitchensis]	0.985	0.868	0.580	4e-64
225461537	225	PREDICTED: protein DEHYDRATION-INDUCED 1	0.965	0.866	0.620	2e-63
294460796	229	unknown [Picea sitchensis]	0.985	0.868	0.571	6e-63

>gi|225443618|ref|XP_002279435.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Vitis vinifera]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 185/232 (79%), Gaps = 31/232 (13%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M++DFW SRLAAAKRQY LQ HHH SSQ+DRLSIDDFEVED+ RPDFPCPYCYED+DIAS
Sbjct: 1   MNTDFWASRLAAAKRQYALQ-HHHNSSQLDRLSIDDFEVEDEARPDFPCPYCYEDYDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQVLLG                              EAEEISKSV +S 
Sbjct: 120 SLLGRDLREAHLQVLLGSGGYRSSIANASNTVTDQFLSSLGLNFSATEAEEISKSVSSSA 179

Query: 151 EDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
           EDTS   A   H WK+SFDPSLS+EERE+R+RQ AGRA FVQD+LLSTLL D
Sbjct: 180 EDTSTMKAVSAHAWKSSFDPSLSYEERERRMRQAAGRAGFVQDILLSTLLAD 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536745|ref|XP_002509439.1| conserved hypothetical protein [Ricinus communis] gi|223549338|gb|EEF50826.1| conserved hypothetical protein [Ricinus communis]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/222 (76%), Positives = 183/222 (82%), Gaps = 31/222 (13%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSR+AAAKRQYTLQ HHHQS  +DRL+IDDFEVED+VRPDFPCPYCYEDFDI S
Sbjct: 1   MDSDFWTSRIAAAKRQYTLQ-HHHQSYHLDRLNIDDFEVEDEVRPDFPCPYCYEDFDITS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIP+SQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQ+LLG                              EAEEISKSVVTS 
Sbjct: 120 SLLGRDLREAHLQMLLGGGGYRSNNGNVSNAATDPFLSSLILNFPTSEAEEISKSVVTSV 179

Query: 151 EDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQ 192
           ED  AK+AAPT+MW++SFDPSLS+EEREKR+RQ AGRA FVQ
Sbjct: 180 EDAPAKTAAPTNMWRSSFDPSLSYEEREKRMRQAAGRAGFVQ 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521402|ref|XP_003529345.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 187/232 (80%), Gaps = 33/232 (14%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF+VE++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           L SHLEDEHSCES+VT+CPICSVKVARDML+HITLQHGHLFKLQRRRRLRRVAIP+SQ L
Sbjct: 60  LSSHLEDEHSCESRVTICPICSVKVARDMLNHITLQHGHLFKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG--------------------------------EAEEISKSVVT 148
           SLLGRDLREAHLQVLLG                                EAEEISKSVVT
Sbjct: 120 SLLGRDLREAHLQVLLGGGGGYRSNSAAVSNAAATDPFLSSFILNFPACEAEEISKSVVT 179

Query: 149 STEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLL 200
           S +D+S+K+A P H+WK+SFDPSLS EEREKR+RQ AGR+ FVQDL LSTLL
Sbjct: 180 SADDSSSKNATPVHIWKSSFDPSLSTEEREKRMRQAAGRSGFVQDLFLSTLL 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075142|gb|ACJ85931.1| unknown [Medicago truncatula] gi|388491118|gb|AFK33625.1| unknown [Medicago truncatula]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 183/235 (77%), Gaps = 34/235 (14%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+FWTSRLAAAKR Y LQ H+H +S +DRL IDDF+VE++VRPDFPCPYCYE+FDI S
Sbjct: 1   MDSEFWTSRLAAAKRHYALQ-HNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CP+CSVKVARDMLSHITLQHGHLFK+QRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG-------------------------------EAEEISKSVVTS 149
           SLLGRDLREAHLQVLL                                EAEEISKSVVTS
Sbjct: 120 SLLGRDLREAHLQVLLNGGGGYRSHSNTVTNASADPFLSSFILNYPACEAEEISKSVVTS 179

Query: 150 TEDTSAKSAAPT--HMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
            ED+S K+      H+WK+SFDPSLS EEREKR+RQ AGR+SFVQDL LSTLL D
Sbjct: 180 AEDSSTKNTTTPVQHIWKSSFDPSLSIEEREKRMRQAAGRSSFVQDLFLSTLLGD 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548672|ref|XP_003542724.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 185/236 (78%), Gaps = 37/236 (15%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF++E++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDMEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CPICS KVAR+MLSHITLQHGHL KLQRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPICSDKVARNMLSHITLQHGHLLKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG------------------------------------EAEEISK 144
           SLLGRDLREAHLQVLLG                                    EAEEISK
Sbjct: 120 SLLGRDLREAHLQVLLGGGGGGGYRSNSVAAAVSNAAATDPFLSSFILNFPACEAEEISK 179

Query: 145 SVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLL 200
           SVVTS E++SAK+A P H+WK+SF PSLS EEREKR+RQ AGR+ FVQ+L LSTLL
Sbjct: 180 SVVTSAENSSAKNATPEHIWKSSFGPSLSTEEREKRMRQAAGRSGFVQELFLSTLL 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433818|ref|XP_004134694.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus] gi|449529572|ref|XP_004171772.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/200 (74%), Positives = 174/200 (87%), Gaps = 3/200 (1%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQY LQ HHHQ+S +D L IDD E++DD RP FPCP+CYE+FD+ S
Sbjct: 1   MDSDFWTSRLAAAKRQYMLQ-HHHQASNLDLLGIDDLEMDDDTRPHFPCPFCYENFDVMS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCE++VTVCPICSVKV  DMLSHITL HGHL+KLQRRRRLR+++IP+SQAL
Sbjct: 60  LCSHLEDEHSCETRVTVCPICSVKVMGDMLSHITLHHGHLYKLQRRRRLRKISIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKR 180
           SLL RDLREAHLQVLLG    ISKS++TS ED S+++ AP+ +WK+SFDPSLS EEREKR
Sbjct: 120 SLLSRDLREAHLQVLLG--SNISKSMLTSAEDVSSENVAPSPIWKSSFDPSLSQEEREKR 177

Query: 181 IRQGAGRASFVQDLLLSTLL 200
           +RQ  GRA F++D+L STLL
Sbjct: 178 MRQAIGRAGFMRDMLFSTLL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910804|gb|ACF06510.1| fiber protein Fb2 [Elaeis guineensis]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/232 (62%), Positives = 164/232 (70%), Gaps = 32/232 (13%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W SRLAAAKR Y+LQQ   Q+ Q DRL IDDFE+E++VR DFPCPYCYED DI S
Sbjct: 1   MDSDLWISRLAAAKRHYSLQQP--QNPQSDRLGIDDFEMEEEVRLDFPCPYCYEDHDITS 58

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH+ ESK  VCPICSVKVARDML+HIT+QHGH+FKLQRRRRLRR  IPSSQ L
Sbjct: 59  LCSHLEDEHAFESKAAVCPICSVKVARDMLNHITIQHGHIFKLQRRRRLRRFPIPSSQTL 118

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQ+LLG                              E EE SKS +++ 
Sbjct: 119 SLLGRDLREAHLQLLLGSGAYRSSNNSASNTSADSFLSSLVLNVPTSETEEPSKSSISTA 178

Query: 151 EDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
           EDT  K    +  WK+S D SLSHEERE++++Q   RA+FVQDLLLS L  D
Sbjct: 179 EDTCIKKTIASQTWKSSLDLSLSHEEREQKLKQATVRATFVQDLLLSALFGD 230

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463922|gb|ADE77482.1| unknown [Picea sitchensis]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 161/231 (69%), Gaps = 32/231 (13%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MD++ W +RLAAAKRQ++L   HH   Q+DRLSIDDFEV++DVRPDF CPYCY+D+DIAS
Sbjct: 1   MDAELWAARLAAAKRQHSL---HHSQPQLDRLSIDDFEVDEDVRPDFSCPYCYDDYDIAS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH  ESK  VCP+C++KV RDML+HIT QHGHLFK+QRRRRLRRVA+P S  L
Sbjct: 58  LCSHLEDEHPFESKAAVCPVCTLKVGRDMLNHITTQHGHLFKIQRRRRLRRVAVPHSSTL 117

Query: 121 SLLGRDLREAHLQVLLG-----------------------------EAEEISKSVVTSTE 151
           SLL R+LREAHLQVLLG                             EAEEISKS  +  +
Sbjct: 118 SLLSRELREAHLQVLLGGGALRSGINSSSTIADSLLSSLVLNFPGTEAEEISKSAASIID 177

Query: 152 DTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
             SAK    +  WK   +PSLS EER ++I+Q   RA+FVQ L++STLL D
Sbjct: 178 AKSAKGTTISQQWKACNEPSLSSEERAQKIKQATLRANFVQQLVMSTLLGD 228

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461537|ref|XP_002285172.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Vitis vinifera]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/232 (62%), Positives = 159/232 (68%), Gaps = 37/232 (15%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+SRLA AKRQ+ L  H    S  DRL IDD EVEDD+    PCPYCYED DIAS
Sbjct: 1   MDSDHWSSRLAVAKRQFML--HQTNKSHSDRLFIDDLEVEDDI----PCPYCYEDHDIAS 54

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHS ES+V VCPICSVK+ARDML HIT+QH HLFKLQRRRRLRRVAIP+SQAL
Sbjct: 55  LCSHLEDEHSFESRVAVCPICSVKIARDMLGHITMQHRHLFKLQRRRRLRRVAIPNSQAL 114

Query: 121 SLLGRDLREAHLQVLLG------------------------------EAEEISKSVVTST 150
           SLLGRDLREAHLQVLLG                              EAEEI+KSVV   
Sbjct: 115 SLLGRDLREAHLQVLLGGGGYRPSNANASNSLTESLLSSLVLNFPLCEAEEITKSVVPDL 174

Query: 151 EDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
           ED S  +++    W TS   SLS EEREK+IRQ   RA F+QDLL+ST+  D
Sbjct: 175 EDISGANSSKK-TWNTSVYSSLSSEEREKKIRQTTARAGFIQDLLISTMFDD 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460796|gb|ADE75972.1| unknown [Picea sitchensis]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 159/231 (68%), Gaps = 32/231 (13%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MD++ W +RLAAAKRQ++L   HH   Q+DRLSIDDFEV++DVRPDF CPYCY+ +DIAS
Sbjct: 1   MDAELWAARLAAAKRQHSL---HHSQPQLDRLSIDDFEVDEDVRPDFSCPYCYDGYDIAS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH  ESK  VCP+C++KV RDML+HIT QHGHLFK+QRRRRLRRV +P S  L
Sbjct: 58  LCSHLEDEHPFESKAAVCPVCTLKVGRDMLNHITTQHGHLFKIQRRRRLRRVTVPHSSTL 117

Query: 121 SLLGRDLREAHLQVLLG-----------------------------EAEEISKSVVTSTE 151
           SLL R+LREAHLQVLLG                             EAEEISKS  +  +
Sbjct: 118 SLLSRELREAHLQVLLGGGALRSGINSSSTIADSLLSSLVLNFPGTEAEEISKSAASIID 177

Query: 152 DTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
             SAK    +  WK   +PSLS EER ++I+Q   RA+FVQ L++STLL D
Sbjct: 178 AKSAKGTTISQQWKACNEPSLSSEERAQKIKQATLRANFVQQLVMSTLLGD 228

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.742	0.672	0.368	4.1e-28
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.727	0.662	0.392	1.8e-25
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.945	0.905	0.336	1.6e-22
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.495	0.452	0.346	3.7e-16
TAIR|locus:2083363	234	AT3G06760 [Arabidopsis thalian	0.198	0.170	0.525	1.6e-14
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.702	0.622	0.267	7.1e-13
UNIPROTKB|H9L0J4	385	LOC431003 "Uncharacterized pro	0.292	0.153	0.347	1.8e-07
MGI|MGI:1921537	381	Kcmf1 "potassium channel modul	0.292	0.154	0.347	4.5e-07
UNIPROTKB|F1PX11	329	KCMF1 "Uncharacterized protein	0.292	0.179	0.347	7.4e-07
UNIPROTKB|F1SP03	386	KCMF1 "Uncharacterized protein	0.292	0.152	0.347	9.5e-07

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 59/160 (36%), Positives = 91/160 (56%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query:   121 SLLGRDLREAHLQVLLGEAEEISKSVVTSTEDTSAKSAAP 160
             S+L R+  + + Q L G       S + S+  +S  +A P
Sbjct:   116 SILRREFPDGNFQSLFG-----GSSCIVSSSSSSNVAADP 150

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/153 (39%), Positives = 90/153 (58%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSM--L 115

Query:   121 SLLGRDLREAHLQVLL-GEAEEISKSVVTSTED 152
             S+L R+  + + Q L  G +  +S S  +   D
Sbjct:   116 SILKREFPDGNFQSLFEGTSRAVSSSSASIAAD 148

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 74/220 (33%), Positives = 113/220 (51%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDS+ W +         + +++  +S     L + D E EDD++ +F CP+C ++FDI  
Sbjct:     1 MDSNSWINCPPVFSSSPSSRRYQSRSD----LYLGDVEGEDDLKAEFMCPFCADEFDIVG 56

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++  H  E+K  VCP+C+ KV  D++ HIT QHG++FK+Q           SS  L
Sbjct:    57 LCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGY-SSTYL 115

Query:   121 SLLGRDLREAHLQVLLGEAEEISKSVVTS-----------------TEDTSAKSAAPTHM 163
             +L  ++LREA+LQ L G +  I  S + S                 TE  S    +P   
Sbjct:   116 TLK-KELREANLQSLGGSSTFIPSSNIDSDPLLSSFMFKPPSAIPITEGDSVAQVSPKDT 174

Query:   164 WKTSFDP-SLSHEEREKRIRQGAGRASFVQDLLLSTLLID 202
              K+     S S+E++EK     A ++ FV+ LL ST+L D
Sbjct:   175 SKSKIQQESFSNEDQEK-----AKKSKFVRGLLWSTMLED 209

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 36/104 (34%), Positives = 59/104 (56%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQH-HHQSSQIDRLSIDDFE-VEDDVRPDFPCPYCYEDFDI 58
             M+ D W    + + R Y  +    +QS     L  ++FE V+DD+  ++PCP+C  D+D+
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDL--EEFEEVDDDIAVEYPCPFCASDYDL 58

Query:    59 ASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFK 102
               LC H+++EH  E+   +CP+CS +V   M+ HIT  H  + K
Sbjct:    59 VELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLK 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2083363 AT3G06760 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:    35 DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESK 74
             +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K
Sbjct:    35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAK 74

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 43/161 (26%), Positives = 73/161 (45%)

Query:    36 DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH-------------SCESKV-TVCPIC 81
             +FE +D++  D+PCP+C +D+D+  LC H+++EH             SC+ ++  +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    82 SVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL--SLLGRDLREAHLQVLLGEA 139
             S +V   M+ HIT QH  +FK            P ++    SL+   L   H    +   
Sbjct:    92 SRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTRKYLQSLIDEPLSTNHTSKSV--L 149

Query:   140 EEISKSVVTSTEDTSAKSAAPTHMWKTSF-DPSLSHEEREK 179
             + +   +        +K   P    + S  D SL  +  EK
Sbjct:   150 DPLLSFIYNPPSPKKSKLVQPDSSSEASMEDNSLIRDSTEK 190

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

UNIPROTKB|H9L0J4 LOC431003 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 97 (39.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query:    37 FEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARD 88
             F VE      F CPYC +  +   SL  H+  EH+  S   +CPIC+         V  D
Sbjct:    70 FSVEQP--QSFTCPYCGKMGYTETSLQEHVASEHAETSTEVICPICAALPGGDPNHVTDD 127

Query:    89 MLSHITLQH 97
               +H+TL+H
Sbjct:   128 FAAHLTLEH 136

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1921537 Kcmf1 "potassium channel modulatory factor 1" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query:    37 FEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARD 88
             F VE      F CPYC +  +   SL  H+  EH+  S   +CPIC+         V  D
Sbjct:    70 FSVEQP--QSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDD 127

Query:    89 MLSHITLQH 97
               +H+TL+H
Sbjct:   128 FAAHLTLEH 136

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PX11 KCMF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 97 (39.2 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query:    37 FEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARD 88
             F VE      F CPYC +  +   SL  H+  EH+  S   +CPIC+         V  D
Sbjct:    19 FSVEQP--QSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDD 76

Query:    89 MLSHITLQH 97
               +H+TL+H
Sbjct:    77 FAAHLTLEH 85

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1SP03 KCMF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 97 (39.2 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 24/69 (34%), Positives = 33/69 (47%)

Query:    37 FEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARD 88
             F VE      F CPYC +  +   SL  H+  EH+  S   +CPIC+         V  D
Sbjct:    70 FSVEQP--QSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDD 127

Query:    89 MLSHITLQH 97
               +H+TL+H
Sbjct:   128 FAAHLTLEH 136

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84J70	DI193_ARATH	No assigned EC number	0.3434	0.9554	0.8654	yes	no
Q688X9	DI191_ORYSJ	No assigned EC number	0.4892	0.9653	0.8628	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027738001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (224 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	3e-59

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  184 bits (468), Expect = 3e-59
 Identities = 93/219 (42%), Positives = 123/219 (56%), Gaps = 39/219 (17%)

Query: 10  LAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH 69
            A+A   Y            D    +D E ED+VR +FPCP+CYEDFDI SLC H+++EH
Sbjct: 1   HASASASYQRALPSRS----DLYLFEDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEH 56

Query: 70  SCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLRE 129
             E+K  VCP+C+ +V +DM++HIT+QHGHLFK+QRRRRLRR    SS ALSLL R+LR+
Sbjct: 57  PFEAKNGVCPVCADRVGKDMVAHITVQHGHLFKMQRRRRLRR--GGSSSALSLLKRELRD 114

Query: 130 AHLQVLLG-----------------------------EAEEISKSVVTSTEDTSAKSAAP 160
            +LQ LLG                             +    SKS  ++    SAKS+  
Sbjct: 115 GNLQSLLGSSCMSSSSNASDSAPDPLLSSFICSSPSADTSSTSKSDSSTEGSASAKSSDQ 174

Query: 161 THMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTL 199
               + S D SLS EE E++ +    R+ FVQ LLLST+
Sbjct: 175 KLSERNSSDSSLSKEELEEKAK----RSEFVQGLLLSTI 209

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	99.88
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.79
KOG1280	381	consensus Uncharacterized conserved protein contai	98.57
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.38
KOG2923	67	consensus Uncharacterized conserved protein [Funct	95.01
COG5216	67	Uncharacterized conserved protein [Function unknow	94.72
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.86
PLN03086	567	PRLI-interacting factor K; Provisional	92.89
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.89
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.9
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	91.09
PHA00733	128	hypothetical protein	91.09
PHA00732	79	hypothetical protein	90.98
smart00531	147	TFIIE Transcription initiation factor IIE.	90.82
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	90.64
PRK09710	64	lar restriction alleviation and modification prote	90.3
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	90.28
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	90.0
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	89.04
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.02
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	88.86
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.7
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	88.61
PLN03086	567	PRLI-interacting factor K; Provisional	88.2
PRK14892	99	putative transcription elongation factor Elf1; Pro	87.65
PHA02768	55	hypothetical protein; Provisional	86.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.03
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.85
COG4888	104	Uncharacterized Zn ribbon-containing protein [Gene	83.83
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	83.81
COG1655	267	Uncharacterized protein conserved in bacteria [Fun	83.04
PF14206	78	Cys_rich_CPCC: Cysteine-rich CPCC	82.63
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	81.42
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	80.19
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	80.02

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=99.88  E-value=5.3e-23  Score=159.63  Aligned_cols=77  Identities=45%  Similarity=0.601  Sum_probs=59.0

Q ss_pred             hHhhhchhHHhhhhhhhhccc--ccc-cCCCC-------------------------CCcccCccccCCCccccccCCCC
Q 028852          119 ALSLLGRDLREAHLQVLLGEA--EEI-SKSVV-------------------------TSTEDTSAKSAAPTHMWKTSFDP  170 (202)
Q Consensus       119 tlSlL~Kelre~~lqsllg~~--~~~-s~~~~-------------------------~~~e~~~~~~~s~~~~~~~~~~~  170 (202)
                      |||||+|||||||||+||||.  ... +.++.                         ++.++.+.++...++.|++++++
T Consensus         1 tlsll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~   80 (105)
T PF14571_consen    1 TLSLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFPAPEAEEPSKSSSSSEEKKSSKKSSSEQNVKSSADS   80 (105)
T ss_pred             CcchhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCCCccccccCCccccccccccccccchhcccccccCC
Confidence            789999999999999999986  211 11111                         11222334445667788888899


Q ss_pred             CCCHHHHHHHHhcccchhhhHHHHHhhhc
Q 028852          171 SLSHEEREKRIRQGAGRASFVQDLLLSTL  199 (202)
Q Consensus       171 ~Ls~ee~eek~k~~~~r~eFVQgLllSTi  199 (202)
                      +||.||||||++    |++||||||||||
T Consensus        81 ~lS~ee~eEk~~----RseFVQ~LllSTI  105 (105)
T PF14571_consen   81 SLSDEEQEEKAQ----RSEFVQGLLLSTI  105 (105)
T ss_pred             CCCHHHHHHHHH----HHHHHHHHHHhhC
Confidence            999999999986    9999999999998

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.79  E-value=6.1e-20  Score=125.94  Aligned_cols=54  Identities=48%  Similarity=0.938  Sum_probs=52.2

Q ss_pred             CcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccchhhhhhhhhhccc
Q 028852           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHG   98 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs~d~i~Hl~~~H~   98 (202)
                      ++|+||||+++||+.+|+.|+.++|..+.++||||||+.+++.||++||+.+|+
T Consensus         1 ~~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    1 DSFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CCcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            379999999999999999999999999999999999999999999999999996

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=98.57  E-value=4e-08  Score=90.25  Aligned_cols=57  Identities=23%  Similarity=0.549  Sum_probs=49.2

Q ss_pred             ccccc-cCCCcCCCCCCCCCcccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           27 SQIDR-LSIDDFEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        27 s~~~~-~~~~~~~~~dd~~~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      -||++ +|+|-+--+++.  .|+||||++ +|....+.+|+...|+.....+|||||+..+
T Consensus        61 ~dfeL~f~Ge~i~~y~~q--SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~  119 (381)
T KOG1280|consen   61 VDFELYFGGEPISHYDPQ--SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANP  119 (381)
T ss_pred             cceeeEecCccccccccc--cccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCc
Confidence            35666 677777665444  999999999 9999999999999999999999999999986

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.38  E-value=0.01  Score=41.43  Aligned_cols=27  Identities=26%  Similarity=0.738  Sum_probs=19.5

Q ss_pred             CCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           73 SKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        73 ~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .....||||.+.+  ++|+-+||-+.|+.
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            4468999999987  78999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=0.014  Score=42.31  Aligned_cols=46  Identities=35%  Similarity=0.792  Sum_probs=31.4

Q ss_pred             ccCCCcCC-CCCCCCCcccCCCCCCCC--CHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           31 RLSIDDFE-VEDDVRPDFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        31 ~~~~~~~~-~~dd~~~~F~CPfC~e~~--dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      -..++|++ .+|...-+|||| ||..|  ....|.        ..-..+.||-|+-.+
T Consensus         6 eVeiedfe~~~e~~~y~yPCp-CGDrf~It~edL~--------~ge~Va~CpsCSL~I   54 (67)
T KOG2923|consen    6 EVEIEDFEFDEENQTYYYPCP-CGDRFQITLEDLE--------NGEDVARCPSCSLII   54 (67)
T ss_pred             eEEeecceeccCCCeEEcCCC-CCCeeeecHHHHh--------CCCeeecCCCceEEE
Confidence            34577777 444567789999 88844  444443        335678999999875

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.013  Score=42.14  Aligned_cols=45  Identities=31%  Similarity=0.775  Sum_probs=28.8

Q ss_pred             cCCCcCCCC-CCCCCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           32 LSIDDFEVE-DDVRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        32 ~~~~~~~~~-dd~~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      +.++|+.-+ ++..-+|+|| ||.  .+.+..|.        ..-..++||-|+-+|
T Consensus         7 ieiedftf~~e~~~ftyPCP-CGDRFeIsLeDl~--------~GE~VArCPSCSLiv   54 (67)
T COG5216           7 IEIEDFTFSREEKTFTYPCP-CGDRFEISLEDLR--------NGEVVARCPSCSLIV   54 (67)
T ss_pred             eEeeeeEEcCCCceEEecCC-CCCEeEEEHHHhh--------CCceEEEcCCceEEE
Confidence            334444332 2446789999 887  55555553        335678999999876

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.86  E-value=0.024  Score=30.99  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=14.7

Q ss_pred             ccCCCCCC-CCCHHHhhhhccccc
Q 028852           47 FPCPYCYE-DFDIASLCSHLEDEH   69 (202)
Q Consensus        47 F~CPfC~e-~~dv~~L~~H~~~eH   69 (202)
                      |.||+|+. --+..+|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            67888877 666777777766554

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=92.89  E-value=0.098  Score=51.50  Aligned_cols=50  Identities=22%  Similarity=0.499  Sum_probs=38.8

Q ss_pred             CCCCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCccc-chhhhhhhhhhc
Q 028852           42 DVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK-VARDMLSHITLQ   96 (202)
Q Consensus        42 d~~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~-vs~d~i~Hl~~~   96 (202)
                      ++..-+.||+|++.|....|-.|....|    +.+.|| |... ...+|..|++..
T Consensus       449 el~~H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~th  499 (567)
T PLN03086        449 EAKNHVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQAST  499 (567)
T ss_pred             ccccCccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhhcc
Confidence            3445679999999888999999988766    678999 9654 356888887643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.89  E-value=0.065  Score=31.56  Aligned_cols=21  Identities=33%  Similarity=0.668  Sum_probs=18.6

Q ss_pred             cccCCCCCCCCCHHHhhhhcc
Q 028852           46 DFPCPYCYEDFDIASLCSHLE   66 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~   66 (202)
                      ..+||+|+..|....|-.|..
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            578999999999999999953

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.90  E-value=0.099  Score=37.55  Aligned_cols=49  Identities=20%  Similarity=0.517  Sum_probs=15.6

Q ss_pred             cCCCCCC-CCCHHHhhhhcccccCCCCC---------------------ceecCCCcccc--hhhhhhhhhhc
Q 028852           48 PCPYCYE-DFDIASLCSHLEDEHSCESK---------------------VTVCPICSVKV--ARDMLSHITLQ   96 (202)
Q Consensus        48 ~CPfC~e-~~dv~~L~~H~~~eH~~e~~---------------------~vVCPVCa~~v--s~d~i~Hl~~~   96 (202)
                      -|+||+. --++..|..|+...|.+...                     ...|++|....  ...+..||...
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            3999999 45688999999999987322                     14599998886  56889999754

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=91.09  E-value=0.1  Score=35.78  Aligned_cols=31  Identities=26%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCC---CceecCCCcc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES---KVTVCPICSV   83 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~---~~vVCPVCa~   83 (202)
                      ..+|||||. .+.+..       ......   ..|.|..|.+
T Consensus         3 LkPCPFCG~~~~~~~~-------~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFCGSADVLIRQ-------DEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCCCCcceEeec-------ccCCCCCCEEEEEcCCCCC
Confidence            578999987 554433       112111   5678999977

>PHA00733 hypothetical protein

Probab=91.09  E-value=0.28  Score=39.24  Aligned_cols=51  Identities=25%  Similarity=0.592  Sum_probs=37.5

Q ss_pred             CcccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|+.|+.. -....|..|... |   .....|++|....  ..++..|+...|+-
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~-h---~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRY-T---EHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhc-C---CcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            35999999994 456778888763 2   2346999997764  56889998877763

>PHA00732 hypothetical protein

Probab=90.98  E-value=0.24  Score=36.71  Aligned_cols=42  Identities=29%  Similarity=0.652  Sum_probs=32.1

Q ss_pred             ccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccchhhhhhhh
Q 028852           47 FPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHI   93 (202)
Q Consensus        47 F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs~d~i~Hl   93 (202)
                      |.|+.|+.. -....|..|....|..    ..|++|..... ++..|+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhh
Confidence            789999994 4788899998765653    26999988765 466666

>smart00531 TFIIE Transcription initiation factor IIE

Probab=90.82  E-value=0.21  Score=40.47  Aligned_cols=39  Identities=18%  Similarity=0.521  Sum_probs=26.9

Q ss_pred             CCCCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           42 DVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        42 d~~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .....|.||.|+.-|+..+-....+   .  ....+||.|...+
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~~d---~--~~~f~Cp~Cg~~l  133 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQLLD---M--DGTFTCPRCGEEL  133 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHhcC---C--CCcEECCCCCCEE
Confidence            3466999999999666554433322   1  3458999999876

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.64  E-value=0.073  Score=29.60  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=12.3

Q ss_pred             ccCCCCCC-CCCHHHhhhhccc
Q 028852           47 FPCPYCYE-DFDIASLCSHLED   67 (202)
Q Consensus        47 F~CPfC~e-~~dv~~L~~H~~~   67 (202)
                      |.||.|++ --+...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            56777766 4445556666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PRK09710 lar restriction alleviation and modification protein; Reviewed

Probab=90.30  E-value=0.12  Score=37.37  Aligned_cols=30  Identities=20%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      .-+||||+. .+.+.         |......++|.-|.+.
T Consensus         6 lKPCPFCG~~~~~v~---------~~~g~~~v~C~~CgA~   36 (64)
T PRK09710          6 VKPCPFCGCPSVTVK---------AISGYYRAKCNGCESR   36 (64)
T ss_pred             ccCCCCCCCceeEEE---------ecCceEEEEcCCCCcC
Confidence            568999999 66554         2333446999999885

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.28  E-value=0.11  Score=33.75  Aligned_cols=34  Identities=29%  Similarity=0.657  Sum_probs=22.0

Q ss_pred             ccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccchhhhh
Q 028852           47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDML   90 (202)
Q Consensus        47 F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs~d~i   90 (202)
                      |.||.|+... +      +.+   ......||+.|...+..+.+
T Consensus         1 m~Cp~Cg~~~-~------~~D---~~~g~~vC~~CG~Vl~e~~i   34 (43)
T PF08271_consen    1 MKCPNCGSKE-I------VFD---PERGELVCPNCGLVLEENII   34 (43)
T ss_dssp             ESBTTTSSSE-E------EEE---TTTTEEEETTT-BBEE-TTB
T ss_pred             CCCcCCcCCc-e------EEc---CCCCeEECCCCCCEeecccc
Confidence            6899998843 2      111   44667899999888766554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=90.00  E-value=0.28  Score=44.51  Aligned_cols=37  Identities=24%  Similarity=0.600  Sum_probs=25.8

Q ss_pred             CCcccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        44 ~~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      +..|.||+|++ .+.+..|--|+... .   -.-.|+||...
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH-~---l~c~C~iCGKa  196 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTH-T---LPCECGICGKA  196 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhcc-C---CCccccccccc
Confidence            66788888888 88888888887654 2   23455555554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=89.04  E-value=0.32  Score=44.10  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             CCcccCCCCCC-CCCHHHhhhhcccccCC--CCCceecCCCccc
Q 028852           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSC--ESKVTVCPICSVK   84 (202)
Q Consensus        44 ~~~F~CPfC~e-~~dv~~L~~H~~~eH~~--e~~~vVCPVCa~~   84 (202)
                      ...|.||-|++ .=+...|-.|- ..|+.  +.+.-.|++|...
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHk-Q~H~~~~s~ka~~C~~C~K~  170 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHK-QTHRSLDSKKAFSCKYCGKV  170 (279)
T ss_pred             CCceeccccccccccccccchhh-cccccccccccccCCCCCce
Confidence            44566666666 55555566663 33332  3334456666443

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.02  E-value=0.24  Score=31.08  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             cccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      .+.||.|+.-|.+..-.-      ......+.||.|-..
T Consensus         2 ~~~CP~C~~~~~v~~~~~------~~~~~~v~C~~C~~~   34 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDSQL------GANGGKVRCGKCGHV   34 (38)
T ss_pred             EEECCCCCCEEEeCHHHc------CCCCCEEECCCCCCE
Confidence            368999999555443221      122347899999764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=88.86  E-value=0.19  Score=35.04  Aligned_cols=31  Identities=19%  Similarity=0.683  Sum_probs=22.6

Q ss_pred             cccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .|.||-|+..+.+.....         .-.+.||.|.+.+
T Consensus         2 ~~~CP~CG~~iev~~~~~---------GeiV~Cp~CGael   32 (54)
T TIGR01206         2 QFECPDCGAEIELENPEL---------GELVICDECGAEL   32 (54)
T ss_pred             ccCCCCCCCEEecCCCcc---------CCEEeCCCCCCEE
Confidence            589999999776644331         3378999998863

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.70  E-value=0.14  Score=28.99  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=15.0

Q ss_pred             ccCCCCCCCCCHHHhhhhcccccC
Q 028852           47 FPCPYCYEDFDIASLCSHLEDEHS   70 (202)
Q Consensus        47 F~CPfC~e~~dv~~L~~H~~~eH~   70 (202)
                      |.||+|...-....|..|+...|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            678888772237778888777664

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=88.61  E-value=0.22  Score=43.00  Aligned_cols=45  Identities=27%  Similarity=0.732  Sum_probs=28.2

Q ss_pred             CCcccCCCCCCCCC--HHHhhhhc-----ccccC--------------CCCCceecCCCcccchhh
Q 028852           44 RPDFPCPYCYEDFD--IASLCSHL-----EDEHS--------------CESKVTVCPICSVKVARD   88 (202)
Q Consensus        44 ~~~F~CPfC~e~~d--v~~L~~H~-----~~eH~--------------~e~~~vVCPVCa~~vs~d   88 (202)
                      ...|.||.|.+.+.  +...|.|.     -....              ...+...||+|...++.+
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            45799999987332  44567772     22211              123456899999988553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=88.20  E-value=0.38  Score=47.49  Aligned_cols=37  Identities=19%  Similarity=0.491  Sum_probs=22.5

Q ss_pred             cccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .|.|| |+..+....|..|+. .|+- .+...|+.|...+
T Consensus       478 pv~Cp-Cg~~~~R~~L~~H~~-thCp-~Kpi~C~fC~~~v  514 (567)
T PLN03086        478 PLQCP-CGVVLEKEQMVQHQA-STCP-LRLITCRFCGDMV  514 (567)
T ss_pred             CccCC-CCCCcchhHHHhhhh-ccCC-CCceeCCCCCCcc
Confidence            46677 766666667777753 3443 3556677776554

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=87.65  E-value=0.25  Score=38.38  Aligned_cols=37  Identities=19%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             CCCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccchh
Q 028852           43 VRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVAR   87 (202)
Q Consensus        43 ~~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs~   87 (202)
                      +...|.||+|++ ..+.     +.-.+  ..-.++||+|-..-+.
T Consensus        18 lpt~f~CP~Cge-~~v~-----v~~~k--~~~h~~C~~CG~y~~~   54 (99)
T PRK14892         18 LPKIFECPRCGK-VSIS-----VKIKK--NIAIITCGNCGLYTEF   54 (99)
T ss_pred             CCcEeECCCCCC-eEee-----eecCC--CcceEECCCCCCccCE
Confidence            346899999995 2111     11111  2456899999886544

>PHA02768 hypothetical protein; Provisional

Probab=86.25  E-value=0.49  Score=33.23  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=25.5

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      .|.||.||+ =.....|..|... |.   ++..|..|..-
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~---k~~kc~~C~k~   40 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN---TNLKLSNCKRI   40 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC---CcccCCcccce
Confidence            489999999 5566789999777 44   45577777653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.03  E-value=0.29  Score=42.14  Aligned_cols=18  Identities=28%  Similarity=0.730  Sum_probs=14.2

Q ss_pred             cccCCCCCCCCCHHHhhh
Q 028852           46 DFPCPYCYEDFDIASLCS   63 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~   63 (202)
                      .++||+|+..|....+..
T Consensus         5 ~~~CPvC~~~F~~~~vrs   22 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRS   22 (214)
T ss_pred             ceECCCCCCeeeeeEEEc
Confidence            689999999888765443

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.85  E-value=0.26  Score=30.97  Aligned_cols=33  Identities=21%  Similarity=0.632  Sum_probs=22.8

Q ss_pred             CcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      ..|.||-||..|++..-.        .+...++||.|.+.+
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~~   36 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGDV   36 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCcc
Confidence            469999999977643221        125678899998743

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]

Probab=83.83  E-value=0.32  Score=38.24  Aligned_cols=36  Identities=19%  Similarity=0.452  Sum_probs=23.0

Q ss_pred             CCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           44 RPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        44 ~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      .-+|+||||+..--++-+     -.-.....+++|-+|-..
T Consensus        20 ~k~FtCp~Cghe~vs~ct-----vkk~~~~g~~~Cg~CGls   55 (104)
T COG4888          20 PKTFTCPRCGHEKVSSCT-----VKKTVNIGTAVCGNCGLS   55 (104)
T ss_pred             CceEecCccCCeeeeEEE-----EEecCceeEEEcccCcce
Confidence            458999999873333222     222344567899999775

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=83.81  E-value=0.49  Score=29.36  Aligned_cols=24  Identities=29%  Similarity=0.899  Sum_probs=13.0

Q ss_pred             cCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcc
Q 028852           48 PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSV   83 (202)
Q Consensus        48 ~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~   83 (202)
                      +||.|+.++..            .+....|||-|..
T Consensus         4 ~Cp~C~se~~y------------~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTY------------EDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----E------------E-SSSEEETTTTE
T ss_pred             CCCCCCCccee------------ccCCEEeCCcccc
Confidence            69999875554            5677899999974

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.04  E-value=0.56  Score=42.00  Aligned_cols=13  Identities=31%  Similarity=0.920  Sum_probs=9.7

Q ss_pred             CcccCCCCCCCCC
Q 028852           45 PDFPCPYCYEDFD   57 (202)
Q Consensus        45 ~~F~CPfC~e~~d   57 (202)
                      .++.||+|+--|-
T Consensus        18 k~ieCPvC~tkFk   30 (267)
T COG1655          18 KTIECPVCNTKFK   30 (267)
T ss_pred             ceeccCcccchhh
Confidence            3799999976543

>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC

Probab=82.63  E-value=0.65  Score=34.70  Aligned_cols=27  Identities=30%  Similarity=0.898  Sum_probs=18.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~   83 (202)
                      .|+||-||. -|+..+           +...-|||||-=
T Consensus         1 K~~CPCCg~~Tl~~~~-----------~~~ydIC~VC~W   28 (78)
T PF14206_consen    1 KYPCPCCGYYTLEERG-----------EGTYDICPVCFW   28 (78)
T ss_pred             CccCCCCCcEEeccCC-----------CcCceECCCCCc
Confidence            389999987 555432           223569999954

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=81.42  E-value=0.69  Score=28.65  Aligned_cols=24  Identities=33%  Similarity=0.829  Sum_probs=15.6

Q ss_pred             ccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcc
Q 028852           47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSV   83 (202)
Q Consensus        47 F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~   83 (202)
                      |.|+.||.-++...             ..-+||+|.+
T Consensus         2 ~~C~~CGy~y~~~~-------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-------------CCCcCcCCCC
Confidence            67888876333322             4568999976

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=80.19  E-value=1.1  Score=26.55  Aligned_cols=19  Identities=32%  Similarity=0.836  Sum_probs=9.8

Q ss_pred             cCCCCCCCCCHHHhhhhcc
Q 028852           48 PCPYCYEDFDIASLCSHLE   66 (202)
Q Consensus        48 ~CPfC~e~~dv~~L~~H~~   66 (202)
                      .||.|++.+....+-.|++
T Consensus         3 ~CPiC~~~v~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREVPENLINSHLD   21 (26)
T ss_pred             cCCCCcCcccHHHHHHHHH
Confidence            4555555555555555543

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=80.02  E-value=1  Score=29.95  Aligned_cols=31  Identities=19%  Similarity=0.712  Sum_probs=22.0

Q ss_pred             CcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcc
Q 028852           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSV   83 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~   83 (202)
                      .+|.|+-|+..|++.   ....     +...+.||.|..
T Consensus         4 Yey~C~~Cg~~fe~~---~~~~-----~~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVL---QKMS-----DDPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEE---EecC-----CCCCCCCCCCCC
Confidence            479999999988853   1211     145678999987

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.67
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.64
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.26
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.01
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.98
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.83
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	96.82
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.81
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.74
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.59
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.52
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.49
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.45
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.45
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.44
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.44
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	96.42
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.39
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.35
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.23
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.22
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.2
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.17
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.11
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.1
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.02
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.94
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.92
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	95.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	95.56
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	95.29
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	95.21
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	95.18
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.12
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	95.06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	95.05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.0
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.94
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	94.92
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	94.87
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	94.86
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	94.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.71
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	94.59
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.57
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.49
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.42
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.41
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.4
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.37
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.36
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	94.33
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	94.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.24
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.23
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.22
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	94.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	94.03
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	94.0
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.99
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	93.95
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	93.94
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.93
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	93.92
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.92
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	93.9
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	93.88
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	93.87
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.82
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	93.81
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	93.78
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	93.63
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.61
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	93.57
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.52
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	93.46
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.36
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.35
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.31
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	93.26
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	93.25
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	93.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.11
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.1
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	93.08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.8
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	92.74
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.71
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.7
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.4
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.4
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	92.39
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	92.29
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	92.29
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	92.21
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	92.16
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.99
2epa_A	72	Krueppel-like factor 10; transforming growth facto	91.66
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	91.63
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	91.48
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	91.29
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	91.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	91.14
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	90.94
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	90.65
1wii_A	85	Hypothetical UPF0222 protein MGC4549; domain of un	90.65
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.26
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	90.21
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.55
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	89.24
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.92
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.81
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.74
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	88.73
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.29
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	88.27
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	88.25
1paa_A	30	Yeast transcription factor ADR1; transcription reg	87.89
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.86
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	87.72
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.67
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.6
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.52
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	87.21
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.02
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.67
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.51
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	86.02
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.01
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.95
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	85.81
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.8
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.42
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	85.22
2ect_A	78	Ring finger protein 126; metal binding protein, st	85.22
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.19
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	84.75
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.73
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	84.7
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.35
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	84.35
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	84.21
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	84.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	84.05
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	83.45
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.43
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	83.23
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	83.17
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	82.87
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.81
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	82.32
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	82.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	82.02
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	81.98
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.71
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	81.7
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	81.65
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	81.59
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.42
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	81.26
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	80.83
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	80.75
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.44
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.31
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	80.27
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.05

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.67  E-value=2.9e-05  Score=50.95  Aligned_cols=53  Identities=26%  Similarity=0.666  Sum_probs=44.8

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|+.|+..| ....|..|....|..+.+...||+|....  ..+|..|+...|+
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            69999999954 67889999888786667889999998875  5689999998886

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.64  E-value=3.7e-05  Score=52.17  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=46.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccch
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHL  100 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~~  100 (202)
                      .|.|++|+. -.....|..|+...|..+.+...|++|....  ..+|..|+...|+..
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            599999999 5567899999988888777889999998875  568999999988763

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.26  E-value=0.0002  Score=45.31  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=39.4

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|++|+. --....|..|+.. |.. .+...||+|....  ..+|..|+...|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            699999999 5567889999775 433 4568999998864  5689999988875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.07  E-value=0.00041  Score=46.02  Aligned_cols=53  Identities=23%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             CcccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|++|+. --....|..|+.. |.. .+...|++|....  ..+|..|+...|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            3699999999 4467889999876 544 4568999998875  56899999888875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.05  E-value=0.00046  Score=47.80  Aligned_cols=51  Identities=20%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             ccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcc
Q 028852           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        47 F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H   97 (202)
                      |.|++|+. --....|..|+...|....+...|++|....  ..+|..|+...|
T Consensus        36 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhc
Confidence            55555555 2234445555443332223444555554432  234455554333

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.01  E-value=0.00053  Score=46.45  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCC--CCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE--SKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e--~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+. -.....|..|+...|...  .+...|++|....  ..+|..|+...|+.
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            599999999 556778999988777654  3678999998875  56899999888775

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.98  E-value=0.00085  Score=42.33  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=39.6

Q ss_pred             ccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           47 FPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        47 F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      |.|+.|+.. -....|..|+.. |.. .+...|++|....  ..+|..|+...|+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            899999994 467889999865 443 4668999998875  56899999776653

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.83  E-value=0.0013  Score=41.95  Aligned_cols=52  Identities=23%  Similarity=0.455  Sum_probs=39.8

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|+.|+..| ....|..|+.. |.. .+...|++|....  ..+|..|+...|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            48999999954 67889999876 543 4568999998875  56889998666643

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.00065  Score=44.86  Aligned_cols=48  Identities=29%  Similarity=0.675  Sum_probs=39.3

Q ss_pred             CcccCCCCCCCCCHHHhhhhcccccCCCCCceecC-CCcccc--hhhhhhhhhh
Q 028852           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCP-ICSVKV--ARDMLSHITL   95 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCP-VCa~~v--s~d~i~Hl~~   95 (202)
                      ..|.|++|+..|....|..|...   ...++..|+ +|....  ..+|..|+..
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            36999999998878899999875   556789999 998763  5588899865

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.81  E-value=0.00083  Score=44.84  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=40.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+. --....|..|+.. |.. .+...|++|....  ..+|..|+...++-
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            699999999 4467889999775 433 4678999998875  56889998776543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.74  E-value=0.0019  Score=43.52  Aligned_cols=53  Identities=21%  Similarity=0.479  Sum_probs=40.9

Q ss_pred             CcccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|++|+..| ....|..|+.. |.. .+...|++|....  ..+|..|+...++.
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            469999999955 57889999865 443 4568999998875  56899999876653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.00025  Score=50.66  Aligned_cols=54  Identities=19%  Similarity=0.310  Sum_probs=42.5

Q ss_pred             CcccCCCCCCCC--CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~~--dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|++|+..|  ....|..|+...| ...+...|++|....  ..+|..|+...|+.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~-~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQ-KLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHH-HHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHc-CCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            369999999966  5789999986543 324578999998875  56899999888875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.64  E-value=0.0012  Score=47.78  Aligned_cols=50  Identities=24%  Similarity=0.505  Sum_probs=39.9

Q ss_pred             cccCCCCCCCC--CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e~~--dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|+.|++.|  ....|..|+.. |  ..+...|++|....  ..+|..|+...|.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            69999999988  78999999764 6  56788999998875  5689999544554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.59  E-value=0.0017  Score=46.26  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=34.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccchh
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHLF  101 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~~~  101 (202)
                      .|.||+|+. --....|..|+...+ . .+...|++|....  ..+|..|+...|....
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKIHT-G-IKPYECNICAKRFMWRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTTTC-C-CCCEECSSSCCEESCHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcC-C-CCCeeCCCCcchhcCHHHHHHHHHHcccccc
Confidence            477888877 444566777765432 2 3456788877654  4577777777666543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.53  E-value=0.0019  Score=44.70  Aligned_cols=50  Identities=18%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H   97 (202)
                      .|.|++|+..| ....|..|+...+.  .+...|++|....  ..+|..|+...+
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~   60 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCHTG--VKPYKCKTCDYAAADSSSLNKHLRIHS   60 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC--CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhcCC--CCCEeCCCCCCccCCHHHHHHHHHHhC
Confidence            35666666533 34455556543221  2345566665443  345555555443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.52  E-value=0.003  Score=42.18  Aligned_cols=53  Identities=25%  Similarity=0.531  Sum_probs=40.5

Q ss_pred             CCcccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           44 RPDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        44 ~~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      ...|.|+.|+..| ....|..|+.. |.. .+...|++|....  ..+|..|+...++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            3479999999955 57789999765 433 4568999998875  5689999977655

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.49  E-value=0.0027  Score=45.47  Aligned_cols=53  Identities=23%  Similarity=0.483  Sum_probs=37.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccC-CCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHS-CESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~-~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||+|+. -.....|..|+...|. ...+...|++|....  ..+|..|+...++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            588888888 5567788888776543 345567888887764  4578888876655

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.45  E-value=0.0012  Score=44.45  Aligned_cols=55  Identities=20%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCC-CCCceecCCCcccc--hhhhhhhhhhcccch
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSC-ESKVTVCPICSVKV--ARDMLSHITLQHGHL  100 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~-e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~~  100 (202)
                      .|.|++|+.. -....|..|+...+.. ..+...|++|....  ..+|..|+...|...
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            6999999994 4677899997654432 35678999998875  568999998888763

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.45  E-value=0.0015  Score=43.64  Aligned_cols=50  Identities=18%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H   97 (202)
                      .|.|++|+. --....|..|+...+.  .+...|++|....  ..+|..|+...+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcC--CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            467777777 3355666677654322  3456677776553  446666665544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.44  E-value=0.003  Score=47.49  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=43.4

Q ss_pred             CCCCcccCCCCCCCC-CHHHhhhhcccccCCCCCc-------eecCCCcccc--hhhhhhhhhhccc
Q 028852           42 DVRPDFPCPYCYEDF-DIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        42 d~~~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~-------vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      +....|+|+.|+..| +...|..|+...|..+...       ..|++|....  ..+|..|+...++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            345689999999944 6788999998888875432       5799998765  5578899887654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.44  E-value=0.002  Score=43.90  Aligned_cols=51  Identities=24%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||+|+. --....|..|+.. |.. .+...|++|....  ..+|..|+...+|
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHGGGGC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            477777777 4445667777653 322 3446677776654  4467777765544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=96.42  E-value=0.002  Score=47.24  Aligned_cols=50  Identities=28%  Similarity=0.628  Sum_probs=40.4

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+.. .....|..|+.. |   .++..|++|....  ..+|..|+...||-
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            5999999994 456779999765 5   4567999998875  56899999988875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.39  E-value=0.0039  Score=43.92  Aligned_cols=52  Identities=19%  Similarity=0.442  Sum_probs=36.6

Q ss_pred             CcccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        45 ~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      ..|.|++|+..| ....|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTD--ERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCC--SCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCC--CCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            468888888844 56778888765432  3557888887764  4578888876655

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.35  E-value=0.004  Score=42.96  Aligned_cols=53  Identities=26%  Similarity=0.505  Sum_probs=41.5

Q ss_pred             CcccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.||+|+. -.....|..|+.. |. ..+...|++|....  ..+|..|+...|+-
T Consensus        35 ~~~~C~~C~~~f~~~~~l~~H~~~-h~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           35 KPYKCKTCDYAAADSSSLNKHLRI-HS-DERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH-SC-CCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHH-hC-CCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            3699999999 5567889999876 43 24568999998875  56899999887764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.23  E-value=0.0053  Score=42.38  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=40.9

Q ss_pred             CcccCCCCCCCC-CHHHhhhhcccccCCCCCc-------eecCCCcccc--hhhhhhhhhhccc
Q 028852           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        45 ~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~-------vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      ..|+|+.|+..| ....|..|+...|..+...       ..|++|....  ..+|..|+...++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            468899999954 6788999988767765321       6899998875  5689999876554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.22  E-value=0.0043  Score=44.63  Aligned_cols=53  Identities=26%  Similarity=0.451  Sum_probs=41.8

Q ss_pred             CcccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.||+|++.| ....|..|+...|  ..++-.|++|....  ..+|..|+...|..
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~--~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLH--AAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTS--CSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhcc--CCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            469999999955 5688999977643  34678999998875  66899999877753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.20  E-value=0.0031  Score=45.22  Aligned_cols=53  Identities=25%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             CcccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.||+|+. --....|..|+... .. .+...|++|....  ..+|..|+...|+.
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h-~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSH-TG-EMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH-SS-SCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHc-CC-CCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            4699999999 55678899998654 32 4668999998875  56899999877764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.17  E-value=0.0013  Score=45.68  Aligned_cols=52  Identities=19%  Similarity=0.350  Sum_probs=42.0

Q ss_pred             CcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc-hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v-s~d~i~Hl~~~H~~   99 (202)
                      ..|.|+||+..|....|-.|.  .|+. .+++.||.|...+ ..+|..|+....+.
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c~-~~~~~C~~C~~~~~~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYCG-ARTELCGNCGRNVLVKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHHH-HCEEECSSSCCEEETTGGGTHHHHBTTB
T ss_pred             cccCCcccChHhhHHHHHHHH--hHcC-CCceEcccCCCcCcHHHHHHHHHHccCC
Confidence            369999999999999999996  5654 6779999998865 56888898764443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.11  E-value=0.0029  Score=42.19  Aligned_cols=50  Identities=24%  Similarity=0.481  Sum_probs=39.3

Q ss_pred             ccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        47 F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      |.|+.|+. --+...|..|+...+  +.+...|++|....  ..++..|+...++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH--TCCCEECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             ccCCCCcccccCchhHHHHHHHcC--CCCCeeCCcCChhhCCHHHHHHHHHHhcC
Confidence            88999999 556788999987643  34668999998875  5689999877665

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.10  E-value=0.004  Score=42.01  Aligned_cols=51  Identities=22%  Similarity=0.545  Sum_probs=39.8

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      -|.|+.|+..| ....|..|.. .|.. .++-.|++|....  ..+|..|+.+..|
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~-~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRR-AHLG-YRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH-HHHT-CCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CccCCCCCCEeCCHHHHHHHHH-HhCC-CcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            49999999955 5678999965 4654 5678999998875  6789999876443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.02  E-value=0.0066  Score=42.72  Aligned_cols=53  Identities=23%  Similarity=0.305  Sum_probs=40.6

Q ss_pred             CcccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|++|+.. .....|..|+... .. .+...|++|....  ..+|..|+...++.
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~h-~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYIH-SK-EKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGGS-CC-CCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCcCCCCccchhCCHHHHHHHHHHh-CC-CCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            35999999994 4778899997654 32 4567999998875  56899999877654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.94  E-value=0.0045  Score=42.64  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=41.6

Q ss_pred             CcccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        45 ~~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ..|.|++|+..| ....|..|+.. |.. .+...|++|....  ..+|..|+...|+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCeECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            369999999944 67889999875 433 4568999998875  56899999887764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.92  E-value=0.0039  Score=42.94  Aligned_cols=54  Identities=28%  Similarity=0.546  Sum_probs=42.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccchh
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHLF  101 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~~~  101 (202)
                      .|.|++|+..| ....|..|+.. |.. .+...|++|....  ..+|..|+...|+..|
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   59 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPI   59 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcc
Confidence            58999999944 67889999775 543 4568999998765  5689999999997544

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.60  E-value=0.0077  Score=43.09  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=25.7

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccc-cCCCCCceecCCCcccc----hhhhhhhhhhcc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDE-HSCESKVTVCPICSVKV----ARDMLSHITLQH   97 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~e-H~~e~~~vVCPVCa~~v----s~d~i~Hl~~~H   97 (202)
                      .|.|+.|+. -.....|..|+... |..+.....|++|....    ..+|..|+...+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            366666666 33455666665530 22222233466665432    335556655433

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.56  E-value=0.0075  Score=42.85  Aligned_cols=45  Identities=22%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhh
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHIT   94 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~   94 (202)
                      .|.|++|+..| ....|..|+.. |   .+...|++|....  ..+|..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            58899998844 56778888765 4   2567889887765  557888884

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=95.29  E-value=0.018  Score=41.45  Aligned_cols=50  Identities=26%  Similarity=0.560  Sum_probs=33.8

Q ss_pred             cccCC--CCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCP--YCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CP--fC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||  .|+.. -+...|..|+. .|  ..+...|++|....  ..++..|+...++
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~-~h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLH-TH--GPRVHVCAECGKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHG-GG--SCCCEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             cccCCCCCCcCccCCHHHHHHHHH-Hc--CCCCeECCCCCchhCCHHHHHHHHHHcCC
Confidence            57788  78884 45667888865 45  45667788887654  4567777766554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.21  E-value=0.014  Score=35.11  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|....|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~-k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTS-CSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCC-CCCCCCCC
Confidence            5999999994 45678889977467543 56889998

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.18  E-value=0.0095  Score=44.46  Aligned_cols=51  Identities=27%  Similarity=0.509  Sum_probs=37.2

Q ss_pred             cccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhccc
Q 028852           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||+  |+. -.....|..|+.. |.. .+...|++  |....  ..+|..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            599987  999 4567788999765 432 45678998  98764  5578889855554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.12  E-value=0.0014  Score=45.30  Aligned_cols=52  Identities=10%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccch
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHL  100 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~~  100 (202)
                      .|.|++|+. --....|..|....|.   ...+|++|....  ..+|..||...|+..
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~~   85 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKLV   85 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            599999999 4467899999988873   678999998765  557999998888753

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=95.07  E-value=0.02  Score=34.45  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            5999999994 456788899765 644 467889998

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=95.06  E-value=0.016  Score=40.01  Aligned_cols=55  Identities=24%  Similarity=0.420  Sum_probs=38.5

Q ss_pred             CCCcccCCC--CCC-CCCHHHhhhhcccccCCCCCceecC--CCcccc--hhhhhhhhhhcccc
Q 028852           43 VRPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        43 ~~~~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCP--VCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      ....|.|++  |+. --....|..|+.. |.. .+...||  +|....  ..+|..|+...++.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   73 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTGA   73 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHH-HSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTSC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHH-hCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            345788997  998 4467888889775 432 3567887  587764  55788888766553

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.05  E-value=0.016  Score=38.58  Aligned_cols=52  Identities=23%  Similarity=0.486  Sum_probs=40.4

Q ss_pred             cccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhccc
Q 028852           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|++  |+. --....|..|+...|.. .+...|++  |....  ..+|..|+...++
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence            588887  999 44678899998766765 46789999  98765  5689999986654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.04  E-value=0.022  Score=34.31  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRG-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGG-GTSC-CCCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhh-hcCC-CCCCCCCCC
Confidence            5999999994 45677889965 4554 367899998

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.00  E-value=0.015  Score=35.10  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |..+ ++-.|+||
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 4456778899654 6543 67889998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.94  E-value=0.02  Score=34.36  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=26.3

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            5999999994 456788899765 544 457889998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.92  E-value=0.015  Score=43.04  Aligned_cols=51  Identities=22%  Similarity=0.508  Sum_probs=39.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccC--CCCCceecCCCcccc--hhhhhhh-hhhc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHS--CESKVTVCPICSVKV--ARDMLSH-ITLQ   96 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~--~e~~~vVCPVCa~~v--s~d~i~H-l~~~   96 (202)
                      .|.|++|+..| ....|..|+...|.  ...++..|++|....  ..+|..| +...
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTS
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhc
Confidence            59999999954 57789999876775  345678999998865  5688999 4443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=94.87  E-value=0.015  Score=38.29  Aligned_cols=49  Identities=24%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             CcccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhh
Q 028852           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (202)
Q Consensus        45 ~~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~   95 (202)
                      ..|.||+  |+. --....|..|+.. |.. .+...|++|....  ..+|..|+..
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHHh
Confidence            3699996  999 4567789999764 443 4568999998875  5678888754

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=94.86  E-value=0.014  Score=45.28  Aligned_cols=51  Identities=24%  Similarity=0.496  Sum_probs=35.5

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||+|+. --....|..|+...+.  .+...|++|....  ..+|..|+...++
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            588888888 4456678888765432  3557788887764  4578888876655

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=94.80  E-value=0.016  Score=34.90  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=26.2

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGC-CCCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            5999999994 466788899665 544 367889998

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=94.75  E-value=0.017  Score=39.16  Aligned_cols=52  Identities=25%  Similarity=0.525  Sum_probs=39.2

Q ss_pred             cccCCC--CCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPY--CYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPf--C~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.||+  |+.. -....|..|+...+.  .+...|++|....  ..+|..|+...++.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCC--CCCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence            599995  9994 467789999875432  4568999998875  56889999866553

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.71  E-value=0.015  Score=41.22  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+.. -....|..|+.  |.. .+...|++|....  ..+|..|+...|..
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCE-YKKLTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCS-TGGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCC-CCCccCccccchhCCHHHHHHHHHHHcCC
Confidence            5999999994 45778899983  654 4678999998775  56899999766653

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=94.59  E-value=0.016  Score=44.22  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhh
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~   95 (202)
                      .|.|+.|+. --....|..|+. .|.. .++-.|++|....  ..+|..|+..
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFN-IHSW-EKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHH-HHHC-CSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHH-HcCC-CCCeeCCccCeecccccchhhhccc
Confidence            477777777 345566777754 3533 3456677776553  4466666654

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.57  E-value=0.021  Score=34.41  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCC-CCCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCC-CCCCCCCCC
Confidence            5999999994 456788899765 544 467889998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.49  E-value=0.025  Score=34.06  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMV-HTA-EKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-TTC-CCSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999999954 56788899654 544 366789998

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.42  E-value=0.034  Score=33.32  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            5999999994 456778899654 544 457889998

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.41  E-value=0.031  Score=33.70  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4456788999765 544 466889998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.40  E-value=0.027  Score=33.78  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4456788899754 543 457899998

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.37  E-value=0.028  Score=33.68  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 456888899654 554 456889998

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.36  E-value=0.024  Score=34.09  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQ-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-TTSS-CCSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            599999999 456678889976 4544 367889998

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.33  E-value=0.022  Score=35.93  Aligned_cols=39  Identities=18%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .|.|++|+..| ....|..|+...|.. .+...|++|....
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~F   51 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGP   51 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCSS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCCC
Confidence            69999999944 678899998766765 4568999997643

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=94.27  E-value=0.025  Score=37.58  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=26.5

Q ss_pred             ccC--CCCCCCC-CHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhccc
Q 028852           47 FPC--PYCYEDF-DIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        47 F~C--PfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~   98 (202)
                      |.|  +.|+..| ....|..|... |.. .+...||+  |....  ..+|..|+...++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            556  5566633 45556666533 322 24456666  65543  3456666665555

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.26  E-value=0.026  Score=33.83  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+..| ....|..|.. .|.. .+...|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK-CHTG-ERHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH-HHSC-CSSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            59999999944 5678899965 5654 367889998

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.24  E-value=0.019  Score=34.57  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTT-SCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4456788899665 544 466889998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.24  E-value=0.019  Score=34.57  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|.. .|.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HHSS-SSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHH-HHCC-CCCCCCCCC
Confidence            5999999994 45678889976 4543 467899998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.23  E-value=0.041  Score=39.51  Aligned_cols=52  Identities=19%  Similarity=0.385  Sum_probs=39.5

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+. --....|..|+.. |.. .+...|++  |....  ..++..|+...++.
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLV-HTG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG-TSC-CCCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            699999999 4567889999775 432 45678987  98765  56889999876653

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.22  E-value=0.027  Score=33.97  Aligned_cols=34  Identities=18%  Similarity=0.062  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4567889999754 643 456789998

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.18  E-value=0.027  Score=33.95  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=25.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4456778889754 544 467889998

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=94.16  E-value=0.039  Score=42.80  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             ccCC--CCCC-CCCHHHhhhhcccccCCCCCceec--CCCcccc--hhhhhhhhhhcc
Q 028852           47 FPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVC--PICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        47 F~CP--fC~e-~~dv~~L~~H~~~eH~~e~~~vVC--PVCa~~v--s~d~i~Hl~~~H   97 (202)
                      |.|+  .|+. -.....|..|+...|....+...|  ++|....  ..+|..|+...+
T Consensus        73 ~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             eeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence            5555  4555 334445555554444444444455  4454432  334555554433

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.10  E-value=0.034  Score=33.51  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |. ..++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~-~~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HT-GEKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TS-CSSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hC-CCCCCCCCCC
Confidence            5999999994 456788899764 54 3467889998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.05  E-value=0.028  Score=33.74  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+. --....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQR-IHTG-VKPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHG-GGSC-CCSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            599999999 556678889975 4554 367899998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.03  E-value=0.032  Score=33.45  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=25.9

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            5999999994 456788899754 543 467889998

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=94.00  E-value=0.027  Score=43.75  Aligned_cols=52  Identities=23%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.||+|+. --+...|..|+...+.  .+...|++|....  ..+|..|+...++.
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  131 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRTHTG--EKPYACPECGKSFSQLAHLRAHQRTHTGE  131 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHT--CCCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CccCcccCCccCCHHHHHHHHHhcCC--CCCCcCCCCCCccCCHHHHHHHHHHhCCC
Confidence            599999999 4577889999876543  4567999998875  55789999876653

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.99  E-value=0.036  Score=33.22  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=26.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|+. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG-GGCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            599999999 446678999975 4543 456889998

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.95  E-value=0.052  Score=32.65  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQR-VHMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGG-GGGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            59999999954 5678889966 4543 456889998

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.94  E-value=0.037  Score=39.12  Aligned_cols=51  Identities=18%  Similarity=0.405  Sum_probs=39.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.| .|+. --....|..|+...+.  .+...|++|....  ..+|..|+...++.
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   63 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIHTGI   63 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSC--CCSEECTTTSCEESSSHHHHHHHTTTCCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCC--CcCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence            6999 9999 5567889999875433  4568999998875  56899999876653

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.93  E-value=0.029  Score=33.77  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. -.....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRS-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-SSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4566889999654 544 467889998

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.92  E-value=0.047  Score=32.78  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=26.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHT-TTTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            59999999954 5678889976 4543 467889998

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.92  E-value=0.035  Score=33.36  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|+. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQR-VHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGG-GGSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            5999999994 45678889965 4544 466889998

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=93.90  E-value=0.027  Score=33.96  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=26.1

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999999954 56788889764 543 467899998

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.88  E-value=0.03  Score=33.70  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKI-HTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-TSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4456788899754 543 467889998

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.87  E-value=0.025  Score=33.91  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=25.9

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 456788899754 544 456789998

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.82  E-value=0.025  Score=34.21  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=25.9

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTG-QRPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHS-CCCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            5999999994 456778899765 544 367899998

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.81  E-value=0.046  Score=40.66  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCC-CCCceecCCCc-----ccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSC-ESKVTVCPICS-----VKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~-e~~~vVCPVCa-----~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|+.|+.. -+...|..|+...|.. +.+..+|++|.     ...  ..+|..|+...++
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~   64 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG   64 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC
Confidence            5778888884 4577788887765432 34556677643     221  4467777766554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.78  E-value=0.022  Score=34.34  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQK-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH-HHHC-SSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            599999999 445678888965 4543 467889998

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.74  E-value=0.043  Score=32.93  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=26.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+. --....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GTT-CCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4556789999654 543 466889998

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=93.63  E-value=0.052  Score=36.55  Aligned_cols=51  Identities=25%  Similarity=0.537  Sum_probs=26.3

Q ss_pred             cccCCC--CCCCC-CHHHhhhhcccccCCCCCceecC--CCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPY--CYEDF-DIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPf--C~e~~-dv~~L~~H~~~eH~~e~~~vVCP--VCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|++  |+..| ....|..|+.. |.. .+...||  +|....  ..+|..|+...++
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTT-SCS-SCCEECCSTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHh-cCC-CCCcCCCCCCCCCccCCHHHHHHHHHHcCC
Confidence            566666  66633 45556666553 221 2345665  365543  3456666654433

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.61  E-value=0.045  Score=32.84  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            599999999 4456778889764 543 456789998

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=93.57  E-value=0.041  Score=36.54  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             cccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCC---Ccccc--hhhhhhhhhhcc
Q 028852           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI---CSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        46 ~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPV---Ca~~v--s~d~i~Hl~~~H   97 (202)
                      .|.||+  |+. -.....|..|+...+.     ..|++   |....  ..+|..|+...|
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            599999  999 5577889999866544     78999   97764  568999987765

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.52  E-value=0.029  Score=33.81  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTR-EKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHH-CCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4566788899765 543 356789998

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.46  E-value=0.022  Score=34.29  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRT-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHH-HSS-CCCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4456788899765 544 367889998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.36  E-value=0.046  Score=32.79  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|.. .|.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT-TTSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHH-HhCC-CCCCCCCCC
Confidence            599999999 556688899965 4544 467889998

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.35  E-value=0.038  Score=33.21  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=25.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSC-CCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4556778899754 544 467889998

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.34  E-value=0.028  Score=33.87  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFR-EKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHS-TTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999999 4456778899665 543 456789998

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.31  E-value=0.039  Score=33.15  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRI-HTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4456778889654 543 467899998

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.26  E-value=0.043  Score=33.53  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             CcccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCc
Q 028852           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICS   82 (202)
Q Consensus        45 ~~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa   82 (202)
                      ..|.|++|+.. -....|..|... |.. .++-.|++|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~   47 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSS   47 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCC
Confidence            46999999994 467889999654 543 4678999996

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=93.25  E-value=0.083  Score=35.51  Aligned_cols=49  Identities=16%  Similarity=0.379  Sum_probs=36.5

Q ss_pred             CcccCCC--CCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhh
Q 028852           45 PDFPCPY--CYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (202)
Q Consensus        45 ~~F~CPf--C~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~   95 (202)
                      ..|.||+  |+.. -....|..|+.. |.. .+...|++|....  ..+|..|+..
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRK-HTG-HRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCcccCCHHHHHHHHHh
Confidence            3699986  9994 467889999754 543 3568999998764  5578888754

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.22  E-value=0.035  Score=33.36  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=26.0

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. -....|..|... |.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            5999999994 456788899665 543 456889998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=93.13  E-value=0.058  Score=32.45  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4556788899654 544 456789998

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.11  E-value=0.041  Score=32.93  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=25.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|++ --....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4556788899654 543 457889998

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.10  E-value=0.059  Score=32.21  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=25.8

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+..| ....|..|.. .|.. .++..|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQR-VHMG-EKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT-TTCC-SCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            59999999944 5678889965 4544 456889988

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.08  E-value=0.028  Score=40.06  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             CCCcccCCCCCCCC---CHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           43 VRPDFPCPYCYEDF---DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        43 ~~~~F~CPfC~e~~---dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .+..|.|++|+..|   ....|..|+.. |.. .++..|++|....  ..+|..|+...|..
T Consensus        47 ~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           47 DDNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cCCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            34567799999976   67789999755 543 4667999998775  56899999877755

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.87  E-value=0.062  Score=32.19  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQK-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT-TTTT-SCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            599999999 455677889975 4543 366789987

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.80  E-value=0.042  Score=41.85  Aligned_cols=52  Identities=25%  Similarity=0.396  Sum_probs=41.7

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+.. .....|..|.. .|.. .++..|++|....  ..+|..|+...|+-
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEI-HHTG-ERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH-HHHT-CCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CeeCCccCeecccccchhhhcc-ccCC-CccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            5999999994 45778999965 4654 4578999998875  66899999999874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.74  E-value=0.045  Score=32.81  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=26.8

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCCc
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICS   82 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVCa   82 (202)
                      .|.|+.|+.. .....|..|... |.. .+...||+|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HDG-SVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HSC-CCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-ccC-CCCCCCcCCC
Confidence            5999999995 467788899765 543 4577999993

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.71  E-value=0.045  Score=32.87  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=25.7

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4556788889754 543 467889998

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.70  E-value=0.043  Score=33.03  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=25.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+. --....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999999 4456788899764 543 456789998

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.40  E-value=0.066  Score=32.07  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HMG-QKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HSC-CSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999999944 56778899654 543 456889998

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.40  E-value=0.042  Score=33.00  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=25.6

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRR-VHTG-GKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTH-HHHS-CCCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            599999999 445677888965 4544 366789998

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.39  E-value=0.057  Score=32.07  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=25.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+. --....|..|... |.. .+.-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4456788899765 543 456889988

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=92.29  E-value=0.13  Score=39.74  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             cccC--CCCCC-CCCHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhccc
Q 028852           46 DFPC--PYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~C--PfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|  +.|+. --....|..|+.. |.. .+...||+  |....  ..+|..|+...+|
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGG-GSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            5999  77999 5567889999775 433 45678988  98775  5689999998777

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=92.29  E-value=0.16  Score=34.85  Aligned_cols=51  Identities=18%  Similarity=0.406  Sum_probs=38.3

Q ss_pred             CcccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhcc
Q 028852           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        45 ~~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H   97 (202)
                      ..|.||+  |+. --....|..|+.. |.. .+...|++|....  ..+|..|+...+
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH-HTS-CCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHH-hCC-CCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            3599986  999 5567889999865 433 3568999998865  568899987654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=92.21  E-value=0.08  Score=37.44  Aligned_cols=51  Identities=20%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             cccCC--CCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CP--fC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.||  .|+. --....|..|+...+  ..+...|++|....  ..+|..|+...++
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRHT--GVKPFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH--CCCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHcC--CCCCccCCccCchhCCHHHHHHHHHHhcC
Confidence            46676  3766 334566666655432  23445677776553  4466666665444

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=92.16  E-value=0.12  Score=38.49  Aligned_cols=52  Identities=21%  Similarity=0.349  Sum_probs=39.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhhhcccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~~~H~~   99 (202)
                      .|.|++|+..| ....|..|+...+  ..+...|++  |....  ..+|..|+...++.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  118 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHT--GEKPFPCPFPGCGKIFARSENLKIHKRTHTGE  118 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHH--CCCSEECSCTTTCCEESCHHHHHHHHTTTCSS
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcC--CCCcccCCcCCCCCccCCHHHHHHHHHhhCCC
Confidence            38999999944 6778999987543  245688998  98765  56889999877663

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.99  E-value=0.075  Score=31.93  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|++|+.. .....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 456778889654 543 466789987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=91.66  E-value=0.27  Score=32.02  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             CCcccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCC--Ccccc--hhhhhhhhh
Q 028852           44 RPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHIT   94 (202)
Q Consensus        44 ~~~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPV--Ca~~v--s~d~i~Hl~   94 (202)
                      ...|.|++  |+. --....|..|+.. |.. .+...|++  |....  ..+|..|+.
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRT-HTG-EKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHH-HSS-SCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHh-cCC-CCCccCCCCCCCcccCCHHHHHhHhh
Confidence            45799999  999 4467889999764 543 46689976  98875  457788874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=91.63  E-value=0.12  Score=36.47  Aligned_cols=51  Identities=25%  Similarity=0.542  Sum_probs=39.3

Q ss_pred             cccCCC--CCC-CCCHHHhhhhcccccCCCCCceecC--CCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCP--VCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|++  |+. -.....|..|+.. |.. .+...|+  +|....  ..+|..|+...++
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   63 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRK-HTG-EKPYQCDFKDCERRFSRSDQLKRHQRRHTG   63 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHC
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHh-hCC-CCCccCCCCCCcCccCCHHHHHHHHHHcCC
Confidence            699998  999 5568899999875 432 4568999  798764  5689999987654

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=91.48  E-value=0.08  Score=38.86  Aligned_cols=47  Identities=32%  Similarity=0.762  Sum_probs=32.3

Q ss_pred             cccCCCcCCCCCCC-CCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           30 DRLSIDDFEVEDDV-RPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        30 ~~~~~~~~~~~dd~-~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      +.+.++|++-+++. .-.|+|| ||.  -+....|...        .-.+.||-|+-.+
T Consensus        13 dev~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I   62 (83)
T 1wge_A           13 DEVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   62 (83)
T ss_dssp             CEEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EEEEHHHceEccCCCEEEEeCC-CCCEEEECHHHHhCC--------CEEEECCCCceEE
Confidence            34556777765443 4579999 988  6666677532        2368899999876

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.29  E-value=0.072  Score=35.74  Aligned_cols=47  Identities=19%  Similarity=0.545  Sum_probs=28.2

Q ss_pred             CCCCCcccCCCCCCCCCHH-H-hhhhc-----ccccCC-CCCceecCCCcccchh
Q 028852           41 DDVRPDFPCPYCYEDFDIA-S-LCSHL-----EDEHSC-ESKVTVCPICSVKVAR   87 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv~-~-L~~H~-----~~eH~~-e~~~vVCPVCa~~vs~   87 (202)
                      +++...+.||.|.+.+... . -|.|.     -..+.. ......||+|...+..
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            4566789999998855432 1 23342     222221 1356789999887643

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=91.24  E-value=0.069  Score=39.75  Aligned_cols=48  Identities=31%  Similarity=0.743  Sum_probs=32.9

Q ss_pred             cccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        30 ~~~~~~~~~~~dd-~~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      +.+.++|++-+++ ..-.|+|| ||.  .++...|...        .-.+.||-|+-.+.
T Consensus         6 deV~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~g--------e~iv~C~sCSL~Ik   56 (89)
T 2jr7_A            6 DEVEIEDFQYDEDSETYFYPCP-CGDNFSITKEDLENG--------EDVATCPSCSLIIK   56 (89)
T ss_dssp             CEEETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHHT--------CCEEECTTTCCEEE
T ss_pred             eEEEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhCC--------CEEEECCCCccEEE
Confidence            3455677665443 34689999 998  6666777542        23688999998763

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=91.14  E-value=0.082  Score=34.42  Aligned_cols=36  Identities=22%  Similarity=0.471  Sum_probs=26.1

Q ss_pred             cccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .|.||.|+..|....-..   ..|.. .++..|++|....
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f   49 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEV   49 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBC
T ss_pred             CccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCcc
Confidence            599999999777654333   45644 4678999998753

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=90.94  E-value=0.14  Score=34.96  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             CCCCCCcccCCCCCCCCCHHH--hhhhcccccCC----CCCceecCCCcccch
Q 028852           40 EDDVRPDFPCPYCYEDFDIAS--LCSHLEDEHSC----ESKVTVCPICSVKVA   86 (202)
Q Consensus        40 ~dd~~~~F~CPfC~e~~dv~~--L~~H~~~eH~~----e~~~vVCPVCa~~vs   86 (202)
                      ++++...|.||.|.+-|....  -|.|.-...+.    ......||+|...+.
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            446777999999988554321  23332221111    233678999988763

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.65  E-value=0.01  Score=38.51  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             cccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhhccc
Q 028852           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        46 ~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      .|.|+.|+..|.....+.-        .+...|++|....  ..+|..|+...++
T Consensus        18 ~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A           18 SQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             EEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCC
T ss_pred             CeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcC
Confidence            5999999986544332221        4667899997764  4577888776554

>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4

Probab=90.65  E-value=0.091  Score=38.69  Aligned_cols=37  Identities=19%  Similarity=0.657  Sum_probs=24.1

Q ss_pred             CCCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           43 VRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        43 ~~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      +...|.||||+-.=.+     .|.-+.......+.|-||...
T Consensus        20 L~t~F~CPfCnh~~sV-----~vkidk~~~~g~l~C~~Cg~~   56 (85)
T 1wii_A           20 LETQFTCPFCNHEKSC-----DVKMDRARNTGVISCTVCLEE   56 (85)
T ss_dssp             CSSCCCCTTTCCSSCE-----EEEEETTTTEEEEEESSSCCE
T ss_pred             CCCeEcCCCCCCCCeE-----EEEEEccCCEEEEEcccCCCe
Confidence            4569999999873221     233333344567889999875

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.26  E-value=0.24  Score=29.37  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |..+ ++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRI-HTGE-NPSGPSS   45 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGG-GSSS-CCCSSSC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            59999999954 56778889764 5443 5667775

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=90.21  E-value=0.32  Score=35.60  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=25.4

Q ss_pred             CCCCCcccCCCCCC-------------CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYE-------------DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e-------------~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      .+++..|.||.|.+             .|+...+..|+..       ...||+|-..+.
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-------~~~cP~~~~~l~   68 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-------DQTDPFNRSPLT   68 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-------SCBCTTTCSBCC
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-------CCCCCCCCCCCC
Confidence            35678999999855             2444444444432       458999988753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.55  E-value=0.34  Score=28.78  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQRV-HTGE-KPSGPSS   45 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGGG-GCCC-CCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCC
Confidence            59999999944 56778889654 5443 5567775

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=89.24  E-value=0.11  Score=38.19  Aligned_cols=47  Identities=32%  Similarity=0.779  Sum_probs=31.7

Q ss_pred             cccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        30 ~~~~~~~~~~~dd-~~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      +.+.++|++-+++ ..-.|+|| ||.  .++...|...        --.+.||-|+-.+
T Consensus         6 dev~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I   55 (83)
T 1yop_A            6 DEIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMI   55 (83)
T ss_dssp             BCCBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHTT--------CCEEECSSSCCEE
T ss_pred             eEEEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhCC--------CEEEECCCCccEE
Confidence            3445666665443 34689999 998  6666677432        2468899999876

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.92  E-value=0.36  Score=28.68  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKI-HTG-ERPSGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TSC-CCCSCSCC
T ss_pred             CEECCccCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            59999999944 56778889654 543 35667775

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.81  E-value=0.19  Score=29.96  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQKT-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            589999999 4456778888754 543 35667775

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.74  E-value=0.36  Score=28.84  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|+.|+.. -....|..|+.. |.. .+.-.|||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHSV-HSG-ERPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTTT-TTS-CCSCTTSC
T ss_pred             ccCCCCCCcccCcHHHHHHHHHh-cCC-CCCCCCCC
Confidence            5999999994 455678889654 544 35667775

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=88.73  E-value=0.47  Score=34.84  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             CCCCCcccCCCCCC------------CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e------------~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      .+++..|.||.|.+            .|+...+..|+..       ...||+|-..+.
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~   74 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTLT   74 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBCC
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCCC
Confidence            35678999999865            2344444444432       468999988753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.29  E-value=0.42  Score=28.42  Aligned_cols=33  Identities=30%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|+.|+..| ....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRV-HTGE-KPSGPSS   45 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGG-GTTC-CCSSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHh-cCCC-CCCCCCC
Confidence            58999999944 55778888654 5433 5567764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=88.27  E-value=0.35  Score=34.29  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             CCCCCcccCCCCCC------------CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e------------~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      .+++..|.||.|.+            .|+...+..|+..       ...||+|...+.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~   59 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQMLT   59 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBCC
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCCC
Confidence            35677999999855            3444455555442       368999988753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=88.25  E-value=0.077  Score=37.36  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=28.2

Q ss_pred             CCCCCCcccCCCCCCCCCH-HHh--hhh-----cccccCCCCCceecCCCcccc
Q 028852           40 EDDVRPDFPCPYCYEDFDI-ASL--CSH-----LEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        40 ~dd~~~~F~CPfC~e~~dv-~~L--~~H-----~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      .+++...|.||.|.+.|.. ..|  |-|     |-..+........||+|...+
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3466778999999884432 233  445     223332233457899998864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=87.89  E-value=0.34  Score=25.64  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSC   71 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~   71 (202)
                      .|.|+.|+..| ....|..|+...|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            48899999955 457788886556654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.86  E-value=0.34  Score=28.79  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |..+ +.-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRI-HRGE-KPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGG-GCSC-CCCSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhH-hCCC-CCCCCCC
Confidence            58999999944 56778888654 5433 4567764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.72  E-value=0.18  Score=33.03  Aligned_cols=18  Identities=17%  Similarity=0.658  Sum_probs=13.6

Q ss_pred             CCCCCCcccCCCCCCCCC
Q 028852           40 EDDVRPDFPCPYCYEDFD   57 (202)
Q Consensus        40 ~dd~~~~F~CPfC~e~~d   57 (202)
                      .+++...+.||.|.+.+.
T Consensus        14 ~~~~~~~~~C~IC~~~~~   31 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQ   31 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCS
T ss_pred             HHhCccCCCCCcCCchhC
Confidence            345677899999988554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.45  Score=28.19  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+.. -....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG-IHTG-EKPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT-TTTT-SSCCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-hhCC-CCCCCCCC
Confidence            5999999994 45677888864 4543 35667775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.60  E-value=0.43  Score=28.29  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG-IHTG-EKPSGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT-TTSC-SCCSSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhH-hcCC-CCCCCCCC
Confidence            59999999954 5567888864 4544 35567775

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.52  E-value=0.46  Score=28.17  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQV-IHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHT-TTCC-SCCSSCCC
T ss_pred             CeECCcCChhhCCHHHHHHHHH-HhCC-CCCCCCCC
Confidence            59999999954 5577888965 4543 34567764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.21  E-value=0.32  Score=30.89  Aligned_cols=18  Identities=17%  Similarity=0.558  Sum_probs=13.1

Q ss_pred             CCCCCcccCCCCCCCCCH
Q 028852           41 DDVRPDFPCPYCYEDFDI   58 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv   58 (202)
                      +++...+.||.|.+.+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~   27 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKE   27 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSS
T ss_pred             hccccCCCCccCCcccCc
Confidence            355668999999885543

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.02  E-value=0.44  Score=28.15  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=23.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~p~~C~~   45 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR-IHTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG-GTSS-CCSSCCCC
T ss_pred             CEECCCCChhhCChHHHHHHHH-hcCC-CCCcCCCC
Confidence            599999999 445677888865 4544 35567765

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.67  E-value=0.31  Score=28.89  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=22.2

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQAT-HSG-EKPSGPSS   45 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHHH-HCC-CSCSCTTC
T ss_pred             CeeccccCChhcCHHHHHHHHHH-cCC-CCCCCCCC
Confidence            588999988 4456778888654 543 35567765

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=86.51  E-value=0.3  Score=33.04  Aligned_cols=47  Identities=26%  Similarity=0.611  Sum_probs=27.7

Q ss_pred             CCCCCcccCCCCCCCCCHHH-h-hhh-----cccccCCC-----CCceecCCCcccchh
Q 028852           41 DDVRPDFPCPYCYEDFDIAS-L-CSH-----LEDEHSCE-----SKVTVCPICSVKVAR   87 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv~~-L-~~H-----~~~eH~~e-----~~~vVCPVCa~~vs~   87 (202)
                      +++...+.||.|.+.|.... | |.|     |-..+...     .....||+|...+..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            35566899999988544321 2 333     23332222     236789999887643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.02  E-value=0.14  Score=35.31  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCCCCCCcccCCCCCCCCCHHHh--hhhcccccCCC---CCceecCCCcccch
Q 028852           39 VEDDVRPDFPCPYCYEDFDIASL--CSHLEDEHSCE---SKVTVCPICSVKVA   86 (202)
Q Consensus        39 ~~dd~~~~F~CPfC~e~~dv~~L--~~H~~~eH~~e---~~~vVCPVCa~~vs   86 (202)
                      .+++....+.||.|.+.+....+  |.|.-=..+..   .....||+|...+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34456678999999885543322  34421111110   12457999998764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.01  E-value=0.47  Score=28.23  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-HTS-SCCCSCCC
T ss_pred             CEECCccCcccCCHHHHHHHHHH-cCC-CCCCCCCC
Confidence            59999999944 56778888654 543 35567775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=85.95  E-value=0.31  Score=29.03  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH-HTT-SCSSSSCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            588999988 4455778888654 543 34566765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=85.81  E-value=0.36  Score=34.35  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=25.0

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESK   74 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~   74 (202)
                      .|.|++|+. -.....|..|+...|+.|.+
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~~~H~~E~R   85 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHINKCHPSENR   85 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHHTTCTTCCC
T ss_pred             ccCCCCCCCEeCCHHHHHHhCcccCcCCCC
Confidence            599999999 55788999999999998754

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.80  E-value=0.49  Score=28.11  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=23.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTT-TSC-CCCCSSCC
T ss_pred             CeECCcCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            589999999 4456778888654 543 35667775

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.42  E-value=0.47  Score=28.03  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQRT-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHT-SCS-SSSSCCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            588999998 4456778888654 543 34566765

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.22  E-value=0.54  Score=27.77  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+.. -....|..|.. .|.. .++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQR-IHTG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT-TTSS-CCSSCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHH-HcCC-CCCCCCCC
Confidence            5889999984 45577888865 4543 34566764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.22  E-value=0.46  Score=32.23  Aligned_cols=46  Identities=26%  Similarity=0.730  Sum_probs=28.4

Q ss_pred             CCCCCcccCCCCCCCCCHHH-----hhhhcccccCCC---CCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYEDFDIAS-----LCSHLEDEHSCE---SKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv~~-----L~~H~~~eH~~e---~~~vVCPVCa~~vs   86 (202)
                      ++....+.||.|.+.|....     -|.|.-=.++..   .....||+|...+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            34556889999988665331     366653333321   13468999988764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.19  E-value=0.48  Score=28.16  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=22.5

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|+.|+..| ....|..|.. .|....++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            58899998844 4577888864 4544245566765

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=84.75  E-value=0.6  Score=26.99  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCP   79 (202)
                      .|.|++|+..| ....|..|... |..+ ++-.||
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   42 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRT-HAGE-SGPSSG   42 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GCCC-CSCCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHh-cCCC-CCCCCC
Confidence            48888888844 45667777543 4432 445554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.73  E-value=0.79  Score=27.15  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|.. .|.. .++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQR-VHTG-EKPSGPSS   45 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHT-TTSS-SCCCCTTC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCC-CCCCCCCC
Confidence            59999999955 5677888854 4543 35567764

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=84.70  E-value=0.4  Score=29.66  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=22.5

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e   72 (202)
                      -|.||.|-. =-+...|..|-+..|..+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            599999988 557788999999999764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.35  E-value=0.46  Score=28.26  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRRS-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSS-SSCCCCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCC
Confidence            58899998844 45678888654 543 35567765

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=84.35  E-value=0.29  Score=33.21  Aligned_cols=47  Identities=21%  Similarity=0.470  Sum_probs=27.7

Q ss_pred             CCCCCcccCCCCCCCCCHHH--hhhhc-----ccccCC----CCCceecCCCcccchh
Q 028852           41 DDVRPDFPCPYCYEDFDIAS--LCSHL-----EDEHSC----ESKVTVCPICSVKVAR   87 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv~~--L~~H~-----~~eH~~----e~~~vVCPVCa~~vs~   87 (202)
                      +++...+.||.|.+.+....  -|.|.     -..+..    ......||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            34566899999988554322  24442     111111    1236789999887643

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=84.21  E-value=0.63  Score=38.12  Aligned_cols=41  Identities=12%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CCCCCCcccCCCCCC------------CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           40 EDDVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        40 ~dd~~~~F~CPfC~e------------~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      ..+++..|.||.|.+            .|+...+..|+...+      ..||+|-..+.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~------~tcP~t~~~l~  152 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG------HFDPVTRSPLT  152 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC------SBCTTTCCBCC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC------CCCCCCcCCCC
Confidence            346788999999854            456666666665421      16999988653

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=84.18  E-value=0.56  Score=36.44  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=26.8

Q ss_pred             CCcccCCCCCC-CCCHHHhhhhcccccCCCCCc
Q 028852           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKV   75 (202)
Q Consensus        44 ~~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~   75 (202)
                      ...+.|=||.+ --++..+..||.+.|.++-..
T Consensus        13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~   45 (121)
T 1wir_A           13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDS   45 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSCCCHHH
T ss_pred             CCceeEecCCCcccCHHHHHHHHHHhcCCCHHH
Confidence            35699999999 668999999999999986543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.05  E-value=0.63  Score=27.37  Aligned_cols=33  Identities=27%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|+.|+..| ....|..|... |.. .++..|+|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   43 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQ-THS-DKSGPSSG   43 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHH-HTC-TTCSSSCC
T ss_pred             CEECCCCCCeeCChHHHHHHHHh-hCC-CCCccCCC
Confidence            58999999944 56778888654 443 34567765

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=83.45  E-value=0.5  Score=33.62  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=25.1

Q ss_pred             CceecCCCcccc-----hhhhhhhhhhcccchhhhhhh
Q 028852           74 KVTVCPICSVKV-----ARDMLSHITLQHGHLFKLQRR  106 (202)
Q Consensus        74 ~~vVCPVCa~~v-----s~d~i~Hl~~~H~~~~k~~r~  106 (202)
                      ..++|.+|-..+     +.||.+||...|...|..-.+
T Consensus        28 ~~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~~e~~~~~~   65 (73)
T 2ct5_A           28 KKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVK   65 (73)
T ss_dssp             SCCEETTTTEECCCCSSTHHHHHHHHHSCHHHHHHHCC
T ss_pred             CEEECCCCCccccCCCChHhHHHHHHHHCHHHHHHHHH
Confidence            567788886665     679999999999988764333

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.43  E-value=0.46  Score=28.10  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~kp~~C~~   45 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHS-CCCSSSTT
T ss_pred             CccCCCCCCCcCCHHHHHHHHHh-cCC-CCCCCCCC
Confidence            58899998844 56677888654 443 34567775

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=83.23  E-value=0.69  Score=36.11  Aligned_cols=46  Identities=26%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             cccCC--CCCCCCCHHHhhhhcccccCCCCCceecCCCcccc-hhhhhhhhh
Q 028852           46 DFPCP--YCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHIT   94 (202)
Q Consensus        46 ~F~CP--fC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v-s~d~i~Hl~   94 (202)
                      .+.||  -|.+-+.+..|..|.. +  =+-+.+.||-|...+ ..++..|+.
T Consensus        82 ~v~C~n~GC~~~~~~~~l~~H~~-~--C~~~~v~C~~C~~~~~r~~l~~H~~  130 (170)
T 3hcs_A           82 MVKCPNEGCLHKMELRHLEDHQA-H--CEFALMDCPQCQRPFQKFHINIHIL  130 (170)
T ss_dssp             EEECCSTTCCCEEEGGGHHHHHT-T--CTTSEEECTTTCCEEEGGGHHHHHH
T ss_pred             ccCCCCCCCCceecHhHHHHHHh-c--CCceeeECCCCChHHHHHHHHHHhh
Confidence            35564  3666556666666641 1  122345666665543 445555554

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=83.17  E-value=0.31  Score=36.23  Aligned_cols=38  Identities=24%  Similarity=0.477  Sum_probs=28.3

Q ss_pred             ccCCCCCCCCCHHHhhhhcccccCC--------------CCCceecCCCccc
Q 028852           47 FPCPYCYEDFDIASLCSHLEDEHSC--------------ESKVTVCPICSVK   84 (202)
Q Consensus        47 F~CPfC~e~~dv~~L~~H~~~eH~~--------------e~~~vVCPVCa~~   84 (202)
                      -.||.||+-+|-.+|+.-...--.+              +...-.||+|..-
T Consensus         9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE   60 (95)
T 2k5c_A            9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEE   60 (95)
T ss_dssp             EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred             ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence            4799999999999999876554333              2223569999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.87  E-value=0.52  Score=27.89  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|.. .|.. .+.-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQR-IHTG-EKSGPSSG   45 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHT-TTSS-CCCCCSCC
T ss_pred             CccCCCCCCccCChHHHHHHHH-HhCC-CCCCCCCC
Confidence            58999999944 4567888865 4543 35567765

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.81  E-value=0.76  Score=27.34  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=22.1

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRRI-HTG-EKPSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HSS-CCCSSCCC
T ss_pred             CcCCCCCCCeeCChHHHHHHHHH-hCC-CCCCCCCC
Confidence            58999999955 45778888654 543 34556654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=82.32  E-value=0.65  Score=24.14  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=15.2

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccc
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDE   68 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~e   68 (202)
                      .|.|++|+..| ....|..|....
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHH
Confidence            37788888854 446677776543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.30  E-value=0.31  Score=33.02  Aligned_cols=47  Identities=21%  Similarity=0.530  Sum_probs=27.1

Q ss_pred             CCCCCcccCCCCCCCCCHHH--hhhhcccccCC---------CCCceecCCCcccchh
Q 028852           41 DDVRPDFPCPYCYEDFDIAS--LCSHLEDEHSC---------ESKVTVCPICSVKVAR   87 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~dv~~--L~~H~~~eH~~---------e~~~vVCPVCa~~vs~   87 (202)
                      +++...+.||.|.+.+....  -|.|.-=..+.         ......||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            35567899999988554321  13332111111         1236789999887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=82.02  E-value=1.1  Score=36.68  Aligned_cols=40  Identities=13%  Similarity=0.149  Sum_probs=23.8

Q ss_pred             CCCCCcccCCCCCCCCC------------HHHhhhhcccccCCCCCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYEDFD------------IASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e~~d------------v~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      .+.+..|.||.|.+-|.            ...+..|+..      ....||+|-..+.
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~------~~~~cP~~~~~~~  254 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFNPVTRSPLT  254 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH------TCSSCTTTCCCCC
T ss_pred             CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHH------CCCCCcCCCCCCc
Confidence            35678999999977332            2333333322      1223999988763

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=81.98  E-value=0.79  Score=28.51  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=22.9

Q ss_pred             cccCCCCCCC-CCHHHhhhhcccccCCCC
Q 028852           46 DFPCPYCYED-FDIASLCSHLEDEHSCES   73 (202)
Q Consensus        46 ~F~CPfC~e~-~dv~~L~~H~~~eH~~e~   73 (202)
                      .|.||+|+.. -....|..|+...|..+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            6999999994 467899999888887643

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.71  E-value=1.2  Score=25.75  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCP   79 (202)
                      .|.|++|+..| ....|..|.. .|..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR-THTGE-SGPSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT-TTCCS-SSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhh-hcCCC-CCCCCC
Confidence            58899999844 5567788864 35433 344554

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.70  E-value=0.46  Score=31.32  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             CCCCcccCCCCCCCCCHH--HhhhhcccccCC----CCCceecCCCcccchh
Q 028852           42 DVRPDFPCPYCYEDFDIA--SLCSHLEDEHSC----ESKVTVCPICSVKVAR   87 (202)
Q Consensus        42 d~~~~F~CPfC~e~~dv~--~L~~H~~~eH~~----e~~~vVCPVCa~~vs~   87 (202)
                      .....+.||.|.+.+...  .-|.|.-=..+.    ......||+|...+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            456689999998844322  234442111111    2456789999887644

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.65  E-value=0.68  Score=30.29  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             cccCCC--CCC-CCCHHHhhhhcccccCCCCCceecCCCccc
Q 028852           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (202)
Q Consensus        46 ~F~CPf--C~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~   84 (202)
                      .|.|++  |+. --....|..|+.. |.. .+...|++|...
T Consensus        38 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~   77 (79)
T 2dlk_A           38 SFSCPEPACGKSFNFKKHLKEHMKL-HSD-TRDYICEFSGPS   77 (79)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH-HHT-SCCCSCCSSSCC
T ss_pred             CeECCCCCCcCccCCHHHHHHHHHH-hCC-CCCeeCCCCCCC
Confidence            699999  999 4567889999874 443 366899999753

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.59  E-value=1  Score=26.59  Aligned_cols=34  Identities=24%  Similarity=0.147  Sum_probs=25.5

Q ss_pred             cccCC--CCCC-CCCHHHhhhhcccccCCCCCceecCCC
Q 028852           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (202)
Q Consensus        46 ~F~CP--fC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVC   81 (202)
                      .|.|+  .|+. -.....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   48 (48)
T 2ent_A           12 PFACTWPGCGWRFSRSDELSRHRRS-HSG-VKPSGPSSG   48 (48)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHTT-SCC-CCSCSSCCC
T ss_pred             CeECCCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59997  8999 4566788899655 543 456789988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.42  E-value=0.77  Score=26.69  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCP   79 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCP   79 (202)
                      .|.|++|+. --....|..|... |..+ +.-.||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQRT-HTGE-SGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHH-TTTS-SCSCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-hCCC-CCCCCC
Confidence            488888888 4445667777643 4332 344453

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.26  E-value=0.63  Score=30.68  Aligned_cols=29  Identities=31%  Similarity=0.543  Sum_probs=24.1

Q ss_pred             CcccCCCCCC-CCCHHHhhhhcccccCCCC
Q 028852           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (202)
Q Consensus        45 ~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~   73 (202)
                      ..|.||+|+. -.....|..|+...|..+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3699999999 4467899999999998753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=80.83  E-value=1.9  Score=28.97  Aligned_cols=46  Identities=26%  Similarity=0.481  Sum_probs=34.2

Q ss_pred             CCCCC-CHHHhhhhcccccCCCC-----CceecC--CCcccc--hhhhhhhhhhcc
Q 028852           52 CYEDF-DIASLCSHLEDEHSCES-----KVTVCP--ICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        52 C~e~~-dv~~L~~H~~~eH~~e~-----~~vVCP--VCa~~v--s~d~i~Hl~~~H   97 (202)
                      |++.| +...|+.|+..+|....     .+.+|.  -|....  ...|+.||...|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            78844 56679999999997654     367887  786552  457999998776

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=80.75  E-value=1  Score=30.68  Aligned_cols=47  Identities=26%  Similarity=0.583  Sum_probs=33.9

Q ss_pred             CcccCC-CCCCCCCHHHhhhhcccccCCCCCceecCCCcccc-hhhhhhhh
Q 028852           45 PDFPCP-YCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHI   93 (202)
Q Consensus        45 ~~F~CP-fC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v-s~d~i~Hl   93 (202)
                      ....|| .|+..+-...|-.|+..+  -..+.+.|+-|...+ ..++..|.
T Consensus        15 ~~v~C~~~C~~~v~r~~l~~H~~~~--C~~r~v~C~~C~~~~~~~~l~~H~   63 (76)
T 2yuc_A           15 NVIPCPNRCPMKLSRRDLPAHLQHD--CPKRRLKCEFCGCDFSGEAYESHE   63 (76)
T ss_dssp             SCCBCTTCCSCBCCSSSSTTTTTTS--CTTSCCCCSSSCCCCCHHHHHHTT
T ss_pred             cccCCCccccHHhhHhHHHhhCHhh--CCCcceECCCCCCccCHHHHHHHH
Confidence            457785 798888888888887643  335678899997765 55677666

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.44  E-value=1.5  Score=25.91  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCP   79 (202)
                      .|.|++|+..| ....|..|... |.. .+.-.|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~   44 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQRV-HSG-EKPSGPS   44 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGGG-SCC-SCCCCCC
T ss_pred             CcCCCCcCchhCCHHHHHHHHHH-hCC-CCCCCCC
Confidence            58999999955 45678888654 543 3455665

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.31  E-value=0.53  Score=27.97  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=21.1

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+. --....|..|... |.. .+.-.||+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~   45 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLRV-HTQ-ETLSGPSS   45 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHHH-HSS-CCSSSCCC
T ss_pred             CeECcccChhhCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            488888888 4455677788654 433 34556664

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=80.27  E-value=1.2  Score=28.83  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             CCcccCCCCCCCCCHHH--hhhhcccccCCCCCceecCCCcccch
Q 028852           44 RPDFPCPYCYEDFDIAS--LCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        44 ~~~F~CPfC~e~~dv~~--L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      ...+.||.|.+.|....  =|.|.-=..........||+|...+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence            34788999988554332  24453333344445678999988653

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.05  E-value=0.68  Score=27.47  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             cccCCCCCCCC-CHHHhhhhcccccCCCCCceecCC
Q 028852           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (202)
Q Consensus        46 ~F~CPfC~e~~-dv~~L~~H~~~eH~~e~~~vVCPV   80 (202)
                      .|.|++|+..| ....|..|... |.. .+.-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   45 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLRL-HSR-EKSSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HHH-TTCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCC
Confidence            58899998844 45667778654 433 24556664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.78
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	93.77
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.02
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.29
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	92.08
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	91.8
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	91.66
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	90.85
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	88.2
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	86.98
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	86.27
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	86.23
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	84.2
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	83.59
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	82.92
d1wiia_	85	Hypothetical UPF0222 protein MGC4549 {Mouse (Mus m	81.19
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	80.32

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.013  Score=39.26  Aligned_cols=45  Identities=24%  Similarity=0.551  Sum_probs=32.8

Q ss_pred             CcCCCCCCCCCcccCCCCCC---CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           35 DDFEVEDDVRPDFPCPYCYE---DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        35 ~~~~~~dd~~~~F~CPfC~e---~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      |+.+-+..-++.|.||.|+.   .||+..|.+.       ....-+|-+|...|-
T Consensus         3 e~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d~-------~~~~F~C~~C~~el~   50 (62)
T d1vd4a_           3 ETDERDSTNRASFKCPVCSSTFTDLEANQLFDP-------MTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHHHEET-------TTTEEBCSSSCCBCE
T ss_pred             chhhhccccCCceECCCCCCCcchhhHHHhcCc-------CCCeEEecCCCCEEe
Confidence            33344444588999999988   7888888775       345678999988763

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.012  Score=40.53  Aligned_cols=47  Identities=32%  Similarity=0.756  Sum_probs=31.9

Q ss_pred             cccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        30 ~~~~~~~~~~~dd-~~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      |.+.+||++-|++ ..-.|+|| ||.  .+....|-++        .-.+.||-|+-.+
T Consensus         6 dev~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~i   55 (70)
T d1wgea1           6 DEVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   55 (70)
T ss_dssp             CEEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EEEEeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEE
Confidence            3445677775544 35689999 998  5555666553        2356799999876

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.02  E-value=0.017  Score=37.16  Aligned_cols=23  Identities=35%  Similarity=0.892  Sum_probs=20.4

Q ss_pred             ceecCCCcccc--hhhhhhhhhhcc
Q 028852           75 VTVCPICSVKV--ARDMLSHITLQH   97 (202)
Q Consensus        75 ~vVCPVCa~~v--s~d~i~Hl~~~H   97 (202)
                      ++.||||.+.+  ++|+.+|+-+.|
T Consensus        24 patcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          24 PATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHh
Confidence            57899999887  899999998887

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.29  E-value=0.015  Score=32.35  Aligned_cols=11  Identities=45%  Similarity=1.947  Sum_probs=6.3

Q ss_pred             ccCCCCCCCCC
Q 028852           47 FPCPYCYEDFD   57 (202)
Q Consensus        47 F~CPfC~e~~d   57 (202)
                      |+||||.++|.
T Consensus         2 ypcp~cfkeft   12 (26)
T d2drpa2           2 YPCPFCFKEFT   12 (26)
T ss_dssp             EECTTTCCEES
T ss_pred             cCCchhhHHhc
Confidence            56666655554

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.08  E-value=0.022  Score=40.19  Aligned_cols=48  Identities=31%  Similarity=0.761  Sum_probs=32.2

Q ss_pred             cccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        30 ~~~~~~~~~~~dd-~~~~F~CPfC~e--~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      |-+.+||++-|++ ..-.|+|| ||.  .+....|..+        .-.+.||-|+-++.
T Consensus         5 dev~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~Ir   55 (82)
T d1ywsa1           5 DEIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMID   55 (82)
T ss_dssp             CEEETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEEE
T ss_pred             cEEEecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEEE
Confidence            4456777775544 45689999 998  4555566543        23456999999863

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.058  Score=33.56  Aligned_cols=47  Identities=19%  Similarity=0.443  Sum_probs=36.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCCCCceecCCCcccc--hhhhhhhhhh
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v--s~d~i~Hl~~   95 (202)
                      .|.|. ||. =-....|..|. ..|.. .++-.|++|...-  ..+|..|+..
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~-~~Ht~-ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHM-SMHLG-LRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHH-HHHSC-CCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CCCCC-CCCeECCHHHhHHHh-hcccc-ccCCcCCCcCCEecCHHHHHHHHhc
Confidence            58996 999 55678899996 56765 4678999998864  5688888753

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.085  Score=37.10  Aligned_cols=46  Identities=17%  Similarity=0.094  Sum_probs=26.5

Q ss_pred             CCCCCcccCCCCCC-CCCHHHh-hhh-cccccCC---CCCceecCCCcccch
Q 028852           41 DDVRPDFPCPYCYE-DFDIASL-CSH-LEDEHSC---ESKVTVCPICSVKVA   86 (202)
Q Consensus        41 dd~~~~F~CPfC~e-~~dv~~L-~~H-~~~eH~~---e~~~vVCPVCa~~vs   86 (202)
                      .+.+..|.||.|++ =-|-+-+ ++| .-+..+.   -.++..||+|...+.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~   68 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCccccccccc
Confidence            46788999999987 3333333 233 1221110   123458999988764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.85  E-value=0.065  Score=35.96  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=24.2

Q ss_pred             CCCCcccCCCCCCCC------------CHHHhhhhcccccCCCCCceecCCCcccch
Q 028852           42 DVRPDFPCPYCYEDF------------DIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        42 d~~~~F~CPfC~e~~------------dv~~L~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      |++..|.||.|.+-|            +..-|..++..      ....||+|...+.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~------~~~~cP~c~~~l~   53 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFNPVTRSPLT   53 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH------TCSSCTTTCCCCC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhc------CCccCCCcccccc
Confidence            456789999997633            33333333322      2357999988763

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.20  E-value=0.099  Score=34.76  Aligned_cols=44  Identities=16%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             CCCCcccCCCCCCCCCHH-Hh-hhhcccccCC----CCCceecCCCcccc
Q 028852           42 DVRPDFPCPYCYEDFDIA-SL-CSHLEDEHSC----ESKVTVCPICSVKV   85 (202)
Q Consensus        42 d~~~~F~CPfC~e~~dv~-~L-~~H~~~eH~~----e~~~vVCPVCa~~v   85 (202)
                      |.+..|.||.|.+-|... .| |.|.-...+.    ......||+|...+
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l   53 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL   53 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccC
Confidence            567789999998733222 11 3333222221    34456799998875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.14  Score=28.87  Aligned_cols=24  Identities=29%  Similarity=0.570  Sum_probs=18.2

Q ss_pred             eecCCCcccc--hhhhhhhhhhcccc
Q 028852           76 TVCPICSVKV--ARDMLSHITLQHGH   99 (202)
Q Consensus        76 vVCPVCa~~v--s~d~i~Hl~~~H~~   99 (202)
                      .-||-|+..+  ..|+..||...|.+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhsy   28 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHSY   28 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             ccCCcchhheeehhhhhHHhhhcccC
Confidence            3588888887  56888888887753

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.27  E-value=0.2  Score=37.12  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             CCCCcccCCCCCC-CCCHHHhhhhcccccCCCCCce
Q 028852           42 DVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVT   76 (202)
Q Consensus        42 d~~~~F~CPfC~e-~~dv~~L~~H~~~eH~~e~~~v   76 (202)
                      +..+..+|-||.. --++..+..||.+.|.++-..+
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~   46 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSM   46 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHH
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCCCHHHH
Confidence            4456778999999 6689999999999999976544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.21  Score=31.83  Aligned_cols=42  Identities=24%  Similarity=0.452  Sum_probs=28.4

Q ss_pred             CcccCCCCCCCCCHHHh--hhhcccccCCCCCceecCCCcccch
Q 028852           45 PDFPCPYCYEDFDIASL--CSHLEDEHSCESKVTVCPICSVKVA   86 (202)
Q Consensus        45 ~~F~CPfC~e~~dv~~L--~~H~~~eH~~e~~~vVCPVCa~~vs   86 (202)
                      +.+.||.|.+.+....+  |.|.-=....+.....||+|-..+.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCccc
Confidence            45789999885544333  4565545555667789999987653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.21  Score=28.54  Aligned_cols=27  Identities=33%  Similarity=0.678  Sum_probs=22.8

Q ss_pred             cccCCCCCC-CCCHHHhhhhcccccCCC
Q 028852           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (202)
Q Consensus        46 ~F~CPfC~e-~~dv~~L~~H~~~eH~~e   72 (202)
                      -|.|+||.. .-|.+-|-.|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            378999976 999999999999888754

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.59  E-value=0.21  Score=27.48  Aligned_cols=23  Identities=26%  Similarity=0.657  Sum_probs=18.5

Q ss_pred             eecCCCcccc--hhhhhhhhhhccc
Q 028852           76 TVCPICSVKV--ARDMLSHITLQHG   98 (202)
Q Consensus        76 vVCPVCa~~v--s~d~i~Hl~~~H~   98 (202)
                      ..||+|-...  ..||+.|+.+-|.
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiihk   26 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIHK   26 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCchhhHHhccccCceEEEEEecC
Confidence            3699998876  5699999987763

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.92  E-value=0.23  Score=29.24  Aligned_cols=26  Identities=19%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             cccCCCCCCCCC-HHHhhhhcccccCC
Q 028852           46 DFPCPYCYEDFD-IASLCSHLEDEHSC   71 (202)
Q Consensus        46 ~F~CPfC~e~~d-v~~L~~H~~~eH~~   71 (202)
                      -|.||+|+..|. ...|..|+...|.-
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CEeCCCCcccccchHHHHHHcccccCC
Confidence            588999999554 45677787766653

>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Putative zinc binding domain
domain: Hypothetical UPF0222 protein MGC4549
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.19  E-value=0.28  Score=34.46  Aligned_cols=38  Identities=18%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             CCCcccCCCCCCCCCHHHhhhhcccccCCCCCceecCCCcccc
Q 028852           43 VRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (202)
Q Consensus        43 ~~~~F~CPfC~e~~dv~~L~~H~~~eH~~e~~~vVCPVCa~~v   85 (202)
                      +...|.||||+-+-.+.     +.-+.......+.|-||....
T Consensus        20 L~t~F~CPfCnh~~sV~-----vk~dkk~~~g~l~C~vCg~~~   57 (85)
T d1wiia_          20 LETQFTCPFCNHEKSCD-----VKMDRARNTGVISCTVCLEEF   57 (85)
T ss_dssp             CSSCCCCTTTCCSSCEE-----EEEETTTTEEEEEESSSCCEE
T ss_pred             CCceEcCCCCCCCCeEE-----EEEEecCCEEEEEEecCCCeE
Confidence            45589999998422332     233333445667899997753

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=0.29  Score=32.34  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=25.5

Q ss_pred             CCceecCCCcccc-----hhhhhhhhhhcccchhh
Q 028852           73 SKVTVCPICSVKV-----ARDMLSHITLQHGHLFK  102 (202)
Q Consensus        73 ~~~vVCPVCa~~v-----s~d~i~Hl~~~H~~~~k  102 (202)
                      -..+||-+|...+     +.||..||..+|.-.|+
T Consensus        20 ~~~i~C~lC~k~i~~~GNTtNl~~HL~~rHp~ef~   54 (60)
T d2ct5a1          20 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFC   54 (60)
T ss_dssp             SSCCEETTTTEECCCCSSTHHHHHHHHHSCHHHHH
T ss_pred             ccchHHHHHHHHhcccCCcchHHHHHHhcCHHHHH
Confidence            4578999999887     67999999999987764