Citrus Sinensis ID: 028859

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVGSSFFTY
cccccccccccccEEccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccEEEEEEcccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEEEEcccccccccccccccc
madnsgtgsngvcvtfkdcedaiqncpssaapppppscgtkdsvyFSVPFMQKLMAEILGTYFMIFAGCASVVVNlnnekivslpgisIVWGLVVMVLVYSLGhisgahfnpsvtiahatckrfpwkqvppyilcQVLGSTLAAGTLRLLFQEKQdqfagtlpagsNIQAFVMEFIITFYLMFVISGvatdnravgssffty
madnsgtgsngVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVGSSFFTY
MADNSGTGSNGVCVTFKDCEDAIQNCpssaapppppsCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVGSSFFTY
******************************************SVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV*******
*********************************************FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVG******
*********NGVCVTFKDCEDAIQNCP***********GTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVGSSFFTY
*********NGVC*TFKDC**********AAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATD***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
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MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVGSSFFTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi yes no 0.950 0.653 0.622 9e-64
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.965 0.658 0.588 5e-62
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.752 0.535 0.671 2e-60
P08995271 Nodulin-26 OS=Glycine max no no 0.896 0.667 0.582 7e-58
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.702 0.503 0.629 2e-56
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.747 0.498 0.588 4e-49
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.846 0.597 0.569 3e-48
Q9C6T0 323 Aquaporin NIP3-1 OS=Arabi no no 0.747 0.467 0.601 9e-48
Q8W037288 Aquaporin NIP2-1 OS=Arabi no no 0.851 0.597 0.502 6e-46
P49173270 Probable aquaporin NIP-ty N/A no 0.717 0.537 0.598 2e-45
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  243 bits (619), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 154/209 (73%), Gaps = 17/209 (8%)

Query: 1   MADNSGTGSNG----VCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLM 55
           MA+ SG G +     V V  K+ ED  Q    +   P       +DS+   SVPF+QKLM
Sbjct: 1   MAEISGNGGDARDGAVVVNLKE-EDEQQQQQQAIHKP----LKKQDSLLSISVPFLQKLM 55

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+VT
Sbjct: 56  AEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVT 115

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F GTLP+GSN+
Sbjct: 116 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNL 175

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAVGS 197
           Q+FV+EFIITFYLMFVISGVATDNRA+G 
Sbjct: 176 QSFVIEFIITFYLMFVISGVATDNRAIGE 204
Water channel probably required to promote glycerol permeability and water transport across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6T0|NIP31_ARATH Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2 Back     alignment and function description
>sp|Q8W037|NIP21_ARATH Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
255562536271 Aquaporin NIP1.1, putative [Ricinus comm 0.905 0.675 0.691 6e-73
224116768242 predicted protein [Populus trichocarpa] 0.777 0.648 0.803 2e-70
359483792282 PREDICTED: aquaporin NIP1-2 [Vitis vinif 0.930 0.666 0.678 3e-70
388506778272 unknown [Lotus japonicus] 0.900 0.669 0.670 3e-68
357447021273 Aquaporin NIP1-2 [Medicago truncatula] g 0.905 0.670 0.654 1e-65
307136182276 aquaporin [Cucumis melo subsp. melo] 0.905 0.663 0.626 2e-64
363806664273 uncharacterized protein LOC100812577 [Gl 0.900 0.666 0.641 3e-64
449508562276 PREDICTED: aquaporin NIP1-2-like [Cucumi 0.905 0.663 0.626 4e-64
357519149269 Aquaporin NIP1-2 [Medicago truncatula] g 0.896 0.672 0.618 1e-63
301072335271 nodulin 26-like intrinsic protein [Fraga 0.910 0.678 0.624 1e-63
>gi|255562536|ref|XP_002522274.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223538527|gb|EEF40132.1| Aquaporin NIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 162/198 (81%), Gaps = 15/198 (7%)

Query: 1   MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLMAEIL 59
           MA+ SG G++GV +  KD               PPPS  +KDSV  FSVPFMQKL+AE++
Sbjct: 1   MAEISGNGNHGVVLDIKDVN-------------PPPSA-SKDSVLSFSVPFMQKLIAEMV 46

Query: 60  GTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119
           GTYF+IFAGC SV VNLN +K+V+LPGISIVWGL VMVLVYS+GHISGAHFNP+VT+A A
Sbjct: 47  GTYFLIFAGCTSVAVNLNFDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTLAFA 106

Query: 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITF 179
           TCKRFPWKQVP YI CQV+GSTLAAGT+RL+F  KQD F GT+PAGS++Q+FV+EFIITF
Sbjct: 107 TCKRFPWKQVPAYIACQVIGSTLAAGTIRLIFTGKQDHFTGTMPAGSDMQSFVVEFIITF 166

Query: 180 YLMFVISGVATDNRAVGS 197
           YLMF+ISGVATDNRA+G 
Sbjct: 167 YLMFIISGVATDNRAIGE 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116768|ref|XP_002317387.1| predicted protein [Populus trichocarpa] gi|222860452|gb|EEE97999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483792|ref|XP_002264957.2| PREDICTED: aquaporin NIP1-2 [Vitis vinifera] gi|297740553|emb|CBI30735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506778|gb|AFK41455.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357447021|ref|XP_003593786.1| Aquaporin NIP1-2 [Medicago truncatula] gi|355482834|gb|AES64037.1| Aquaporin NIP1-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|307136182|gb|ADN34021.1| aquaporin [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|363806664|ref|NP_001242005.1| uncharacterized protein LOC100812577 [Glycine max] gi|255646225|gb|ACU23597.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449508562|ref|XP_004163347.1| PREDICTED: aquaporin NIP1-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519149|ref|XP_003629863.1| Aquaporin NIP1-2 [Medicago truncatula] gi|355523885|gb|AET04339.1| Aquaporin NIP1-2 [Medicago truncatula] gi|388495656|gb|AFK35894.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|301072335|gb|ADK56129.1| nodulin 26-like intrinsic protein [Fragaria chiloensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.772 0.530 0.725 3.2e-58
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.970 0.662 0.572 3.3e-56
TAIR|locus:2826185 323 NIP3;1 "NOD26-like intrinsic p 0.747 0.467 0.601 9.1e-45
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.722 0.506 0.577 1.2e-42
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.717 0.512 0.6 1.2e-42
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.831 0.593 0.523 8.4e-42
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.737 0.488 0.486 6.9e-31
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.732 0.486 0.463 3.1e-28
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.747 0.506 0.388 5.2e-26
TIGR_CMR|CPS_4099232 CPS_4099 "aquaporin Z" [Colwel 0.707 0.616 0.384 1.9e-21
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 119/164 (72%), Positives = 140/164 (85%)

Query:    41 KDSVY-FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLV 99
             +DS+   SVPF+QKLMAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLV
Sbjct:    40 QDSLLSISVPFLQKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLV 99

Query:   100 YSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF---QE--- 153
             YSLGHISGAHFNP+VTIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF   Q+   
Sbjct:   100 YSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCS 159

Query:   154 -KQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVG 196
              K D F GTLP+GSN+Q+FV+EFIITFYLMFVISGVATDNRA+G
Sbjct:   160 GKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNRAIG 203
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA
GO:0015700 "arsenite transport" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP
GO:0006857 "oligopeptide transport" evidence=RCA
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4099 CPS_4099 "aquaporin Z" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LFP7NIP12_ARATHNo assigned EC number0.62200.95040.6530yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.3152.1
hypothetical protein (242 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_44000008
glycerol kinase (EC-2.7.1.30) (519 aa)
•     • 0.418

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-82
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-62
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 6e-43
pfam00230218 pfam00230, MIP, Major intrinsic protein 4e-41
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-41
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-39
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-35
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-31
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 3e-30
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-23
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-08
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.002
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 0.004
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information 
 Score =  247 bits (631), Expect = 1e-82
 Identities = 123/208 (59%), Positives = 150/208 (72%), Gaps = 14/208 (6%)

Query: 1   MADNSGTG-----SNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLM 55
           MAD SG G        V V  K+  +  Q   +   P P     +  SV  SVPF+QKL+
Sbjct: 1   MADISGNGYGNAREGVVMVNLKEEVEHQQEMEAIHNPKPLKKQDSLLSV--SVPFLQKLI 58

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF++F GCASVVVN+ N+ +V+LPGI+IVWGL +MVL+YSLGHISGAH NP+VT
Sbjct: 59  AEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVT 118

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F G+ P GS++
Sbjct: 119 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDL 178

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAVG 196
           QAFVMEFI+TFYLMF+ISGVATDNRA+G
Sbjct: 179 QAFVMEFIVTFYLMFIISGVATDNRAIG 206

Length = 296
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 99.97
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.97
PTZ00016294 aquaglyceroporin; Provisional 99.97
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.97
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.97
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.96
PLN00183274 putative aquaporin NIP7; Provisional 99.96
PLN00027252 aquaporin TIP; Provisional 99.95
PRK05420231 aquaporin Z; Provisional 99.95
PLN00167256 aquaporin TIP5; Provisional 99.95
PLN00166250 aquaporin TIP2; Provisional 99.95
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.93
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.91
PLN00182283 putative aquaporin NIP4; Provisional 99.71
PLN00183274 putative aquaporin NIP7; Provisional 99.7
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.69
PLN00026298 aquaporin NIP; Provisional 99.69
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.64
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.64
PLN00184296 aquaporin NIP1; Provisional 99.59
PLN00166250 aquaporin TIP2; Provisional 99.55
PRK05420231 aquaporin Z; Provisional 99.54
PLN00027252 aquaporin TIP; Provisional 99.52
PTZ00016294 aquaglyceroporin; Provisional 99.49
PLN00167256 aquaporin TIP5; Provisional 99.49
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.44
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.42
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.57
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-33  Score=242.34  Aligned_cols=150  Identities=71%  Similarity=1.233  Sum_probs=127.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCC
Q 028859           46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP  125 (202)
Q Consensus        46 ~~~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~  125 (202)
                      .+.++++.+++||+|||+|+|++|+++..+...+....++.++++||+++++.+++++++||+|+|||||+++++.++++
T Consensus        49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~  128 (296)
T PLN00184         49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP  128 (296)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence            45578999999999999999999998754433222245777899999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhHHHHHHHHHhhHHhhcccccc-------cccccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 028859          126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQD-------QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAV  195 (202)
Q Consensus       126 ~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~-------~~~~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~  195 (202)
                      |.++++||++|++|+++|+++++.+++....       ...++.|..+.+++|+.|+++||+|+++++.++.|+|+.
T Consensus       129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~  205 (296)
T PLN00184        129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI  205 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC
Confidence            9999999999999999999999998853211       123356667889999999999999999999987776644

>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 8e-21
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 2e-20
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-19
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-19
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-18
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-18
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-18
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-17
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-15
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-14
1fx8_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-10
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-09
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-09
1ldf_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-09
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 5e-09
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 6e-09
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 3e-08
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-07
2b5f_A 303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-07
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-07
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-07
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-07
3d9s_A 266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 8e-07
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-06
2b6o_A 263 Electron Crystallographic Structure Of Lens Aquapor 2e-06
1fqy_A 269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-06
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-06
1j4n_A 271 Crystal Structure Of The Aqp1 Water Channel Length 1e-05
1ymg_A 263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-05
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 14/156 (8%)
Query: 52  QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAHF 110
           +KL AE  GT++++F GC S V+     ++ +   G+++ WGL V+ + +++GHISG HF
Sbjct: 6   RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHF 65
Query: 111 NPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT--- 161
           NP+VTI      RFP K+V  Y++ QV+G  +AA  L L+      F      FA     
Sbjct: 66  NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 125
Query: 162 --LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRA 194
              P G S + A V+E +++   + VI G ATD  A
Sbjct: 126 EHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFA 160
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-56
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 6e-56
2o9g_A234 Aquaporin Z; integral membrane protein, structural 7e-55
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-04
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-54
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-04
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 1e-51
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-04
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 4e-50
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-04
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-50
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-04
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-47
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 2e-46
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 7e-44
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 8e-43
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-40
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-04
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-39
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
 Score =  178 bits (453), Expect = 2e-56
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 43  SVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSL 102
            + F   ++++ + E LGT+ ++F G  +               + + WGL V   +   
Sbjct: 2   HMLFYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61

Query: 103 GHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-- 160
             +SGAH N +V+I  ++  +F  K++P Y   Q+LG+ +   T+  L+           
Sbjct: 62  AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQ 121

Query: 161 ------TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVG 196
                   P+ S   AF  E I+T  L+ VI  V  D    G
Sbjct: 122 FAWETSRNPSISLTGAFFNELILTGILLLVILVV-VDENICG 162
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.98
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.98
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.97
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.97
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.97
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.97
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.97
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.97
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.97
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.97
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.71
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.61
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.57
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.57
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.56
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.56
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.56
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.56
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.55
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.55
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.52
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.51
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.44
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 84.39
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=9.9e-34  Score=246.42  Aligned_cols=177  Identities=25%  Similarity=0.331  Sum_probs=144.0

Q ss_pred             eechhhh-hcCCCCCCCCCCCCCCCC---CCcccchHHHHHHHHHHHHHHHHHHHhhhhheecc--cCCCccCchHHHHH
Q 028859           17 KDCEDAI-QNCPSSAAPPPPPSCGTK---DSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIVSLPGISIV   90 (202)
Q Consensus        17 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~EfigT~llv~~~~~~~~~~~--~~~~~~~~~~~al~   90 (202)
                      .+|..++ -+.++..+|++.|++...   .++....+++|++++||+|||+|+|++|++++...  ......+++.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala   93 (340)
T 3iyz_A           14 ASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLC   93 (340)
T ss_pred             hhcChhhhcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence            3455444 477888888888876422   23445568999999999999999999999876432  22233567889999


Q ss_pred             HHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCCCchhhhhhHHHHHHHHHhhHHhhcccccccccc---cCCCcCh
Q 028859           91 WGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSN  167 (202)
Q Consensus        91 ~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~~---t~p~~s~  167 (202)
                      ||+++++.+++++++||||+|||||+++++.|+++|.+++.||++|++||++|+.+++.++++......+   +.|..+.
T Consensus        94 ~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~  173 (340)
T 3iyz_A           94 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTA  173 (340)
T ss_pred             HHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCH
Confidence            9999999999999999999999999999999999999999999999999999999999998754332222   2345688


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC
Q 028859          168 IQAFVMEFIITFYLMFVISGVATDNR  193 (202)
Q Consensus       168 ~~~f~~E~~~T~~L~~~il~~~~~~r  193 (202)
                      .++|+.|+++||+|+++|+.+.++++
T Consensus       174 ~~~f~~E~i~Tf~Lv~~Ila~~d~~~  199 (340)
T 3iyz_A          174 GHGLLVELIITFQLVFTIFASCDDKR  199 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999999999864443
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-28
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-04
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-27
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 3e-04
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 9e-27
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-24
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-04
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (257), Expect = 6e-28
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 47  SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS 106
           S  F + + AE   + F +F G  + +        + +  +++ +GL +  LV ++GHIS
Sbjct: 1   SASFWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHIS 58

Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
           GAH NP+VT A     +    +   Y++ Q+LG+   A  L  +               P
Sbjct: 59  GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 118

Query: 164 AGSNIQAFVMEFIITFYLMFVISGVATDNR 193
             S  QA ++E  +T   +  I     + R
Sbjct: 119 GVSVGQATIVEIFLTLQFVLCIFATYDERR 148
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.97
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.96
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.58
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.53
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.51
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.46
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-31  Score=220.49  Aligned_cols=146  Identities=26%  Similarity=0.388  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhheecccCCCccCchHHHHHHHHHHHHHHHHhcCCCccccChhhhHHHHhccCCCCC
Q 028859           48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK  127 (202)
Q Consensus        48 ~~~~~~~~~EfigT~llv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGahlNPAvTla~~l~g~~~~~  127 (202)
                      .++||++++||+||++++|+++++.......  ..+.+.+++++|++++..+++++++||||+|||||+++++.|+++|.
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~--~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~   79 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLL   79 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C--HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChh
Confidence            3689999999999999999999987644332  24566789999999999999999999999999999999999999999


Q ss_pred             CchhhhhhHHHHHHHHHhhHHhhccccccccc---ccCCCcChHHHHHHHHHHHHHHHHHHHhhccCCCCcC
Q 028859          128 QVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA---GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAVG  196 (202)
Q Consensus       128 ~~~~Yi~aQ~lGa~~a~~~~~~~~~~~~~~~~---~t~p~~s~~~~f~~E~~~T~~L~~~il~~~~~~r~~~  196 (202)
                      +.+.|+++|++|+++|+++++.++++......   .+.|..+..++++.|++.|++|+++++.+. |+|+..
T Consensus        80 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~-~~~~~~  150 (234)
T d1ymga1          80 RAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY-DERRNG  150 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH-CTTSCS
T ss_pred             heeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeee-cCCccC
Confidence            99999999999999999999999976544332   345667899999999999999999999986 444433
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure