Citrus Sinensis ID: 028867

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYWL
cEEEEccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEccccEEEEEccccccccccccccccccEEEEEccEEccHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHcccccEEEEEEEEEccccEEEEEEcccccEEEEEEEEcccEEEEEEcHHHHHHHccccccccccccEEEEccccc
ccEEEccccccccHHHcccccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEEccccccccccccccccccEEEEEEccHccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEEcHHHHHHHHccccccccccccEEEEEEEEc
MLAIFHkafanppeelhspasqkcskrpklpedtlsdflsrhsdntfsmnfGHAAVLayvpphspltkdrrlfcgfEDIYCLFMGSLNNLCSLIRQyglskgtdEAMFVIEAYRTlrdrgpypadqvvkdldGSFAFVVYDSKAGTVFTAlgsdggvklywgiaadgsvvisddLEVIKEgcaksfapfpqgklnffshywl
MLAIFHkafanppeelhspasqkcskrpkLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCaksfapfpqgklnffshywl
MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYWL
*********************************************TFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYW*
MLAIFHKAFANPPE*************************SRHSDNTFSMNFGHAAVLAYVP**********LFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNF*SHYWL
MLAIFHKAFANP*****************LPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYWL
ML**FHKAFANPPEELHS***********LPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYWL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSHYWL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
P24805149 Stem-specific protein TSJ N/A no 0.732 0.993 0.4 7e-26
Q54MB4 557 Probable asparagine synth yes no 0.356 0.129 0.453 6e-08
Q10MX3 604 Asparagine synthetase [gl no no 0.658 0.220 0.315 1e-07
O24661 586 Asparagine synthetase [gl N/A no 0.589 0.203 0.296 0.0002
P49092 586 Asparagine synthetase [gl N/A no 0.311 0.107 0.390 0.0003
Q43011 591 Asparagine synthetase [gl no no 0.346 0.118 0.352 0.0005
P49094 586 Asparagine synthetase [gl N/A no 0.346 0.119 0.338 0.0008
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  117 bits (292), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 1   MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYV 60
           MLA+F ++   PP EL  P +    K  K  E+    F +   D+TF   F    +    
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 61  PPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRG 120
              +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR 
Sbjct: 61  GNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRA 118

Query: 121 PYPADQVVKDLDGSFAFVVYDSKAGTVFTA 150
           PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct: 119 PYPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 Back     alignment and function description
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 Back     alignment and function description
>sp|O24661|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3 Back     alignment and function description
>sp|P49092|ASNS1_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Lotus japonicus GN=AS1 PE=2 SV=2 Back     alignment and function description
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 Back     alignment and function description
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
224114988255 predicted protein [Populus trichocarpa] 0.950 0.752 0.812 9e-89
18416995250 aluminum induced protein with YGL and LR 0.950 0.768 0.822 3e-88
284521002255 stem-specific protein tsjt1, putative [J 0.950 0.752 0.807 3e-87
255587366226 Stem-specific protein TSJT1, putative [R 0.950 0.849 0.802 5e-87
224128197255 predicted protein [Populus trichocarpa] 0.950 0.752 0.796 4e-86
4972070266 putative protein [Arabidopsis thaliana] 0.950 0.721 0.759 3e-85
388511014254 unknown [Lotus japonicus] 0.950 0.755 0.802 7e-85
449446945254 PREDICTED: stem-specific protein TSJT1-l 0.950 0.755 0.781 4e-84
225461387255 PREDICTED: stem-specific protein TSJT1 [ 0.950 0.752 0.802 5e-84
147801277255 hypothetical protein VITISV_010055 [Viti 0.950 0.752 0.796 1e-82
>gi|224114988|ref|XP_002316911.1| predicted protein [Populus trichocarpa] gi|222859976|gb|EEE97523.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 175/192 (91%)

Query: 1   MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYV 60
           MLAIFHKAFANPPEEL+SPASQ+ +++PKLP++TLS+FLS H   TFS+NFG AAVLAYV
Sbjct: 1   MLAIFHKAFANPPEELNSPASQRSTRKPKLPDETLSEFLSHHPQKTFSINFGEAAVLAYV 60

Query: 61  PPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRG 120
           P  SP +  +RLFCGFE IYCLF GSLNNLC+L +QYGL+KGT+EAMFVIEA++TLRDRG
Sbjct: 61  PQDSPFSPQQRLFCGFEGIYCLFSGSLNNLCTLNKQYGLTKGTNEAMFVIEAFKTLRDRG 120

Query: 121 PYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKE 180
           PYPADQVVKDLDGSFAFV+YDSKAGTVF ALGSDGGVKLYWGIAADGSVVISDDLE+IK 
Sbjct: 121 PYPADQVVKDLDGSFAFVIYDSKAGTVFAALGSDGGVKLYWGIAADGSVVISDDLEIIKA 180

Query: 181 GCAKSFAPFPQG 192
           GCAKSFAPFP G
Sbjct: 181 GCAKSFAPFPTG 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18416995|ref|NP_567775.1| aluminum induced protein with YGL and LRDR motifs [Arabidopsis thaliana] gi|297799238|ref|XP_002867503.1| hypothetical protein ARALYDRAFT_913794 [Arabidopsis lyrata subsp. lyrata] gi|14030723|gb|AAK53036.1|AF375452_1 AT4g27450/F27G19_50 [Arabidopsis thaliana] gi|15028057|gb|AAK76559.1| unknown protein [Arabidopsis thaliana] gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis thaliana] gi|21593019|gb|AAM64968.1| unknown [Arabidopsis thaliana] gi|297313339|gb|EFH43762.1| hypothetical protein ARALYDRAFT_913794 [Arabidopsis lyrata subsp. lyrata] gi|332659944|gb|AEE85344.1| aluminum induced protein with YGL and LRDR motifs [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|284521002|gb|ADB93076.1| stem-specific protein tsjt1, putative [Jatropha curcas] Back     alignment and taxonomy information
>gi|255587366|ref|XP_002534247.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223525648|gb|EEF28137.1| Stem-specific protein TSJT1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128197|ref|XP_002329105.1| predicted protein [Populus trichocarpa] gi|118483955|gb|ABK93866.1| unknown [Populus trichocarpa] gi|222869774|gb|EEF06905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4972070|emb|CAB43877.1| putative protein [Arabidopsis thaliana] gi|7269599|emb|CAB81395.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388511014|gb|AFK43573.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449446945|ref|XP_004141230.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225461387|ref|XP_002284777.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|302143042|emb|CBI20337.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147801277|emb|CAN63710.1| hypothetical protein VITISV_010055 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2123994250 AT4G27450 "AT4G27450" [Arabido 0.950 0.768 0.822 1.5e-83
TAIR|locus:2090116253 AT3G15450 "AT3G15450" [Arabido 0.940 0.750 0.694 8.9e-70
TAIR|locus:2170822251 AT5G43830 "AT5G43830" [Arabido 0.935 0.752 0.479 6.4e-44
TAIR|locus:2182137234 AILP1 "AT5G19140" [Arabidopsis 0.930 0.803 0.476 7.8e-39
TAIR|locus:2084598248 AT3G22850 "AT3G22850" [Arabido 0.920 0.75 0.438 4.9e-37
DICTYBASE|DDB_G0286059 557 asns "asparagine synthetase" [ 0.351 0.127 0.459 2.6e-08
TAIR|locus:2099580 584 ASN1 "glutamine-dependent aspa 0.361 0.125 0.363 0.00041
TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 158/192 (82%), Positives = 177/192 (92%)

Query:     1 MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYV 60
             MLAIFH+AFA+PPEEL+SPAS+KCSK+PKLPE+TL+DFL R+  NTFSM+FG AAVLAYV
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    61 PPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRG 120
              P +  +  +RLFCGF+DIYCLF GSLNNLC L +QYGL+K T+EAMFVIEAYRTLRDRG
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   121 PYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKE 180
             PYPADQVVKDLDGSF+FVVYDSKAG+VFTALGSDGGVKLYWGIAADGSVVISDDL+VIKE
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIKE 180

Query:   181 GCAKSFAPFPQG 192
             GCAKSFAPFP G
Sbjct:   181 GCAKSFAPFPTG 192
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0001666 "response to hypoxia" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2099580 ASN1 "glutamine-dependent asparagine synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110945
hypothetical protein (256 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
pfam12481228 pfam12481, DUF3700, Aluminium induced protein 1e-118
cd01910224 cd01910, Wali7, This domain is present in Wali7, a 1e-104
cd00352220 cd00352, Gn_AT_II, Glutamine amidotransferases cla 2e-19
PTZ00077 586 PTZ00077, PTZ00077, asparagine synthetase-like pro 2e-10
PLN02549 578 PLN02549, PLN02549, asparagine synthase (glutamine 2e-08
PRK09431 554 PRK09431, asnB, asparagine synthetase B; Provision 2e-07
pfam13537120 pfam13537, GATase_7, Glutamine amidotransferase do 2e-04
pfam00310223 pfam00310, GATase_2, Glutamine amidotransferases c 2e-04
cd00712220 cd00712, AsnB, Glutamine amidotransferases class-I 0.002
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein Back     alignment and domain information 
 Score =  334 bits (859), Expect = e-118
 Identities = 124/192 (64%), Positives = 144/192 (75%), Gaps = 3/192 (1%)

Query: 2   LAIFHKAFANPPEELHSPAS-QKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYV 60
           LA+FHK+ A PPEEL+SPAS    S + K PE+ L DF+S +  N  S+NFG +A LAY 
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANP-NAVSVNFGDSAFLAYS 59

Query: 61  PPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRG 120
                     RLF   +DI+CLF G L NL SL +QYGLSK  +EAM VIEAYRTLRDRG
Sbjct: 60  HSKQSPLL-PRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRG 118

Query: 121 PYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKE 180
           PYPADQVVKDL+GSFAFV+YDSK GTVF AL +DG V L+WGIAADGS+V SDDLE++K 
Sbjct: 119 PYPADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKA 178

Query: 181 GCAKSFAPFPQG 192
           GC KSFAPFPQG
Sbjct: 179 GCGKSFAPFPQG 190

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional Back     alignment and domain information
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain Back     alignment and domain information
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II Back     alignment and domain information
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
cd01910224 Wali7 This domain is present in Wali7, a protein o 100.0
PF12481228 DUF3700: Aluminium induced protein ; InterPro: IPR 100.0
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 100.0
PTZ00077 586 asparagine synthetase-like protein; Provisional 100.0
PRK09431 554 asnB asparagine synthetase B; Provisional 100.0
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 99.98
cd00712220 AsnB Glutamine amidotransferases class-II (GATase) 99.97
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 99.97
PF13537125 GATase_7: Glutamine amidotransferase domain; PDB: 99.97
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 99.97
PRK07631 475 amidophosphoribosyltransferase; Provisional 99.97
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 99.96
cd01909199 betaLS_CarA_N Glutamine amidotransferases class-II 99.96
PRK08525 445 amidophosphoribosyltransferase; Provisional 99.96
PRK07272 484 amidophosphoribosyltransferase; Provisional 99.96
PRK07349 500 amidophosphoribosyltransferase; Provisional 99.96
cd03766181 Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn 99.96
PRK06388 474 amidophosphoribosyltransferase; Provisional 99.96
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 99.96
PRK06781 471 amidophosphoribosyltransferase; Provisional 99.96
PRK08341 442 amidophosphoribosyltransferase; Provisional 99.96
cd00714215 GFAT Glutamine amidotransferases class-II (Gn-AT)_ 99.96
PLN02440 479 amidophosphoribosyltransferase 99.96
PRK09123 479 amidophosphoribosyltransferase; Provisional 99.95
PRK07847 510 amidophosphoribosyltransferase; Provisional 99.95
PRK05793 469 amidophosphoribosyltransferase; Provisional 99.95
PRK09246 501 amidophosphoribosyltransferase; Provisional 99.95
cd01907249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 99.95
TIGR01134 442 purF amidophosphoribosyltransferase. Alternate nam 99.94
cd00352220 Gn_AT_II Glutamine amidotransferases class-II (GAT 99.94
cd00715252 GPATase_N Glutamine amidotransferases class-II (GN 99.94
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 99.94
COG0034 470 PurF Glutamine phosphoribosylpyrophosphate amidotr 99.94
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.93
PF13522133 GATase_6: Glutamine amidotransferase domain 99.92
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.92
KOG0572 474 consensus Glutamine phosphoribosylpyrophosphate am 99.92
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.89
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.88
cd00713413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.8
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.79
cd01908257 YafJ Glutamine amidotransferases class-II (Gn-AT)_ 99.73
TIGR03442251 conserved hypothetical protein TIGR03442. Members 99.71
PF00310361 GATase_2: Glutamine amidotransferases class-II; In 99.67
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 99.47
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.43
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 99.28
PF13230271 GATase_4: Glutamine amidotransferases class-II; PD 98.62
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 98.33
PF09147201 DUF1933: Domain of unknown function (DUF1933); Int 97.92
COG0121252 Predicted glutamine amidotransferase [General func 96.29
KOG0399 2142 consensus Glutamate synthase [Amino acid transport 94.11
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 82.18
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information 
Probab=100.00  E-value=7e-52  Score=341.31  Aligned_cols=193  Identities=58%  Similarity=0.922  Sum_probs=177.7

Q ss_pred             ceeccccccCCCccccCCCCCcCCCCCCCcchHHHHhccCCCCCcccccccceeEEEEeCCCCCCCCCCceeecCCcEEE
Q 028867            2 LAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYC   81 (202)
Q Consensus         2 l~~f~~~~a~~p~~l~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~QP~~~~~~~~~l   81 (202)
                      ||||+|+||+|||||++|.+.+.   ++.+++|++.|.+..| +.+++.+|+.+.|||++..++ ...|.+++.+++++|
T Consensus         1 laif~~~~~~~p~el~~~~~~~~---~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~   75 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP---AKTAEELLKRFLSANP-SAVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC   75 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc---CCCHHHHHHHHHhcCC-CcEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence            89999999999999999986543   6678899999999999 899999999999999988765 568888888899999


Q ss_pred             EEEeEEccHHHHHHHcCCCCCCCHHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEE
Q 028867           82 LFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYW  161 (202)
Q Consensus        82 v~nG~I~N~~eL~~~lg~~~~~~D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyy  161 (202)
                      ++||+|||+.+|+++|+..++.+|+|+|+++|++|+++|++++.+++++|+|+|||||||..++++++|||++|++||||
T Consensus        76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYy  155 (224)
T cd01910          76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYW  155 (224)
T ss_pred             EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEE
Confidence            99999999999999998878899999999999998778977777899999999999999999999999999999999999


Q ss_pred             EEECCceEEEEechhhHhhhcccceEEeCCCcEEEccc
Q 028867          162 GIAADGSVVISDDLEVIKEGCAKSFAPFPQGKLNFFSH  199 (202)
Q Consensus       162 g~~~dg~~~faSe~~aL~~~~~~~~~~~ppG~~~~~~~  199 (202)
                      +.+.+|.++||||+++|...|++.+++|||||||+++.
T Consensus       156 g~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~g  193 (224)
T cd01910         156 GIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEG  193 (224)
T ss_pred             EEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCC
Confidence            98878899999999999999977899999999999843

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>PRK07631 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type Back     alignment and domain information
>PRK08525 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07272 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07349 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd03766 Gn_AT_II_novel Gn_AT_II_novel Back     alignment and domain information
>PRK06388 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PRK06781 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08341 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type Back     alignment and domain information
>PLN02440 amidophosphoribosyltransferase Back     alignment and domain information
>PRK09123 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07847 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK05793 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09246 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information
>TIGR01134 purF amidophosphoribosyltransferase Back     alignment and domain information
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>PF13522 GATase_6: Glutamine amidotransferase domain Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type Back     alignment and domain information
>TIGR03442 conserved hypothetical protein TIGR03442 Back     alignment and domain information
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices Back     alignment and domain information
>COG0121 Predicted glutamine amidotransferase [General function prediction only] Back     alignment and domain information
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 2e-05
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Back     alignment and structure
 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 128 VKDLDGSFAFVVYDSKAGTVFTALGSDG-GVK-LYWGIAADGSVVISDDLEVIKEGCAKS 185
           + DL G FAF +YDS+       +G D  G+  LY G    G + ++ +++ +   C ++
Sbjct: 114 LDDLQGMFAFALYDSEKDAYL--IGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RT 170

Query: 186 FAPFPQGKLNFFSHYWL 202
              FP G       Y  
Sbjct: 171 IKEFPAG------SYLW 181

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 99.97
1xff_A240 D-fructose-6-, glucosamine--fructose-6-phosphate a 99.96
1ao0_A 459 Glutamine phosphoribosylpyrophosphate amidotransfe 99.96
1ecf_A 504 Glutamine phosphoribosylpyrophosphate amidotransf; 99.95
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 99.95
2bpl_A 608 Glucosamine--fructose-6-phosphate aminotransferase 99.94
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 99.92
3mdn_A274 Glutamine aminotransferase class-II domain protei; 99.9
1te5_A257 Conserved hypothetical protein; glutamine amidotra 99.81
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.76
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.74
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
Probab=99.97  E-value=1.1e-30  Score=241.21  Aligned_cols=157  Identities=19%  Similarity=0.334  Sum_probs=133.2

Q ss_pred             hHHHHhccCCCCCcccccccceeEEEEeC---CCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---CCCCCCHH
Q 028867           33 DTLSDFLSRHSDNTFSMNFGHAAVLAYVP---PHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---LSKGTDEA  106 (202)
Q Consensus        33 ~l~~~f~~~~~~~~~~~~~g~~~~l~~~~---~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~~~~~~D~  106 (202)
                      +|++.+.+|+| +...++..+...+++++   .+.. .++||+.+.+++++++|||+|||+.+|+++|.   .+.+.||+
T Consensus        22 ~m~~~l~hRGp-D~~G~~~~~~~~lgh~Rlsi~~~~-~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDt   99 (553)
T 1ct9_A           22 ELSRLMRHRGP-DWSGIYASDNAILAHERLSIVDVN-AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDC   99 (553)
T ss_dssp             HHHHTTGGGCB-TEEEEEECSSEEEEEEECCCSCTT-TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTT
T ss_pred             HHHHHHhccCC-CcccEEEECCEEEEEEeeeeeCCC-CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcH
Confidence            45688899999 87776655444444444   3333 68999988888899999999999999999984   38899999


Q ss_pred             HHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhcccce
Q 028867          107 MFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAKSF  186 (202)
Q Consensus       107 e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~~~  186 (202)
                      |+|+++|++   +|    .+++++|+|+|||++||..+++|+++||++|+|||||+...++.++||||.++|...+. .+
T Consensus       100 Evil~l~~~---~g----~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~-~i  171 (553)
T 1ct9_A          100 EVILALYQE---KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCR-TI  171 (553)
T ss_dssp             HHHHHHHHH---HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCS-EE
T ss_pred             HHHHHHHHH---HH----HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcC-CE
Confidence            999999996   46    58999999999999999988999999999999999999854678999999999987775 69


Q ss_pred             EEeCCCcEEEccc
Q 028867          187 APFPQGKLNFFSH  199 (202)
Q Consensus       187 ~~~ppG~~~~~~~  199 (202)
                      .+|||||++..++
T Consensus       172 ~~l~pG~~~~~~~  184 (553)
T 1ct9_A          172 KEFPAGSYLWSQD  184 (553)
T ss_dssp             EECCTTEEEETTT
T ss_pred             EEECCCeEEEEcC
Confidence            9999999998643
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Back     alignment and structure
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Back     alignment and structure
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Back     alignment and structure
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1ct9a2192 Asparagine synthetase B, N-terminal domain {Escher 100.0
d1jgta2206 beta-Lactam synthetase {Streptomyces clavuligerus 99.97
d1gph12234 Glutamine PRPP amidotransferase, N-terminal domain 99.95
d1q15a2204 beta-Lactam synthetase {Pectobacterium carotovorum 99.94
d1ecfa2249 Glutamine PRPP amidotransferase, N-terminal domain 99.93
d1xffa_238 Glucosamine 6-phosphate synthase, N-terminal domai 99.89
d1te5a_253 Hypothetical protein YafJ (PA1307) {Pseudomonas ae 99.23
d1ea0a3422 Alpha subunit of glutamate synthase, N-terminal do 99.23
d1ofda3430 Alpha subunit of glutamate synthase, N-terminal do 99.21
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-36  Score=241.17  Aligned_cols=160  Identities=19%  Similarity=0.314  Sum_probs=135.2

Q ss_pred             cchHHHHhccCCCCCcccccccceeEEEEeC---CCCCCCCCCceeecCCcEEEEEEeEEccHHHHHHHcC---CCCCCC
Q 028867           31 PEDTLSDFLSRHSDNTFSMNFGHAAVLAYVP---PHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYG---LSKGTD  104 (202)
Q Consensus        31 ~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~~---~~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~~~~~~  104 (202)
                      ..+|.+.+.+|+| |...++..+...+++++   .+.. .+.||....+++++++|||+|||+.+|++.|.   .+.+.+
T Consensus        20 ~~~m~~~l~hRGp-D~~~~~~~~~~~lgh~Rlsi~~~~-~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~s   97 (192)
T d1ct9a2          20 ALELSRLMRHRGP-DWSGIYASDNAILAHERLSIVDVN-AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGS   97 (192)
T ss_dssp             HHHHHHTTGGGCB-TEEEEEECSSEEEEEEECCCSCTT-TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCC
T ss_pred             HHHHHHHhcccCC-CCCCeEEeCCEEEEEEEEEEcccc-CCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCCC
Confidence            3456677899999 87777665554444444   3333 46778777788999999999999999999984   367889


Q ss_pred             HHHHHHHHHHHhHhcCCchHHHHhhhccCcEEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHhhhccc
Q 028867          105 EAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTALGSDGGVKLYWGIAADGSVVISDDLEVIKEGCAK  184 (202)
Q Consensus       105 D~e~i~~~y~~~~~~G~~~~~~~l~~L~G~Fafvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~~  184 (202)
                      |+|+++++|++   +|    .++++.|+|+|||++||..+++|+++||++|+|||||+..++|.++||||+++|...|. 
T Consensus        98 Dtevll~~~~~---~g----~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~~~-  169 (192)
T d1ct9a2          98 DCEVILALYQE---KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCR-  169 (192)
T ss_dssp             TTHHHHHHHHH---HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCS-
T ss_pred             cHHHHHHHhhh---cc----hhhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHhhC-
Confidence            99999999996   56    58999999999999999999999999999999999999976778999999999999986 


Q ss_pred             ceEEeCCCcEEEcccc
Q 028867          185 SFAPFPQGKLNFFSHY  200 (202)
Q Consensus       185 ~~~~~ppG~~~~~~~~  200 (202)
                      .+++|||||++.++++
T Consensus       170 ~i~~~~pG~~l~~~~~  185 (192)
T d1ct9a2         170 TIKEFPAGSYLWSQDG  185 (192)
T ss_dssp             EEEECCTTEEEETTTC
T ss_pred             CeEEcCCccEEEEcCC
Confidence            6999999999987653
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure