Citrus Sinensis ID: 028873

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MLASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
ccccccEEEEEEccccccccccccccccccccccEEEcHHHHHHHHHHccccccccccccccccccccEEEEccccEEEEEEEEEEEEEEcccccEEEEEEEccEEEEccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccEEEEcccEEEEEEc
ccccHHHHHHHHcccccccHcHHHHHHHccccccEEccHHHHHHHHHHcccEEEccccccccccccccccccccccEEEccEEEEEEEcccccccHEEEEEEccEEEcccHccccHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccHccccccccEEccccEEEEEEc
MLASFSTIALFVGflpmglddlrDWTNNVQRHIPIYVAMRDFEVMKKTHYYLvdtsgiipgaavselqfniideepftvqdlkitplpvwhgagyrslgfrfgnicyisdvseipeetypflqdCEILIMdalrpdrsssthfglprALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETegldvqlsydglrvpvml
MLASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSssthfglpraleevrkiqPKRTLFIGMMHLMDHEKVNEELLKLMETegldvqlsydglrvpvml
MLASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
****FSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALR********FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR*****
**ASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
MLASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
*L*SFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLASFSTIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
O74545301 Putative hydrolase C777.0 yes no 0.856 0.574 0.305 9e-20
Q7MUY1 492 Octanoyltransferase OS=Po yes no 0.831 0.341 0.256 1e-09
>sp|O74545|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1 Back     alignment and function desciption
 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 20/193 (10%)

Query: 18  GLDDLRDWT-NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE 75
           G+DDLR+WT   +Q  + IY+  R ++V++++  Y+V+      G +V    F++   ++
Sbjct: 107 GMDDLREWTLGFLQPSVKIYLTERTYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDK 166

Query: 76  PFTVQDLKI--TPLPVWHGA---------GYRSLGFRFGNICYISDVSEIPEETYPFLQD 124
           PF + D+ I  TPLPV HG           Y  +GFR G++ YISD + +P  T   ++ 
Sbjct: 167 PFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLMEG 226

Query: 125 CEILIMDALRPDRSSSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLM 182
             ++++DAL+ +   S HF   +A E +  ++  P R L+ G  H ++H +  +EL  L 
Sbjct: 227 SNVVVVDALKHEPYPS-HFSFKQAEEFIASLEHVPSRVLYTGFSHKVEHNETVKELSVLK 285

Query: 183 ETEGLDVQLSYDG 195
               +  + +YDG
Sbjct: 286 ----VPTEPAYDG 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q7MUY1|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
255572929 346 catalytic, putative [Ricinus communis] g 0.915 0.534 0.902 1e-93
449458165 357 PREDICTED: putative hydrolase C777.06c-l 0.915 0.518 0.864 2e-92
225442301 350 PREDICTED: putative hydrolase C777.06c [ 0.915 0.528 0.875 5e-92
224135033 314 predicted protein [Populus trichocarpa] 0.915 0.589 0.859 8e-90
297829934 359 metallo-beta-lactamase family protein [A 0.915 0.515 0.838 1e-89
42564134 361 metallo-beta-lactamase family protein [A 0.915 0.512 0.833 5e-89
363814330 342 uncharacterized protein LOC100786919 [Gl 0.915 0.540 0.837 9e-89
9294602 309 hydrolase-like protein [Arabidopsis thal 0.915 0.598 0.833 2e-88
218202019 365 hypothetical protein OsI_31065 [Oryza sa 0.915 0.506 0.827 3e-88
357513653 341 Hydrolase-like protein [Medicago truncat 0.915 0.542 0.848 3e-88
>gi|255572929|ref|XP_002527395.1| catalytic, putative [Ricinus communis] gi|223533205|gb|EEF34961.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/185 (90%), Positives = 173/185 (93%)

Query: 18  GLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPF 77
           GLDDLRDWTNNVQ HIPIYVA RDFEVMKKTHYYLVDTS IIPGAAVSELQFNI+ EEPF
Sbjct: 162 GLDDLRDWTNNVQPHIPIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSELQFNIMHEEPF 221

Query: 78  TVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDR 137
            V DLKITPLPVWHG GYRSLGFRFG ICYISDVS+IPEETYP L+DCEILI+DALRPDR
Sbjct: 222 IVCDLKITPLPVWHGPGYRSLGFRFGKICYISDVSDIPEETYPLLKDCEILILDALRPDR 281

Query: 138 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR 197
           SSSTHFGLPRAL+EVRKIQPKRTLF GMMHLMDHEKVNE LLKLME+EGLDVQLSYDGLR
Sbjct: 282 SSSTHFGLPRALDEVRKIQPKRTLFTGMMHLMDHEKVNEYLLKLMESEGLDVQLSYDGLR 341

Query: 198 VPVML 202
           VPV L
Sbjct: 342 VPVTL 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458165|ref|XP_004146818.1| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus] gi|449476657|ref|XP_004154798.1| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225442301|ref|XP_002280465.1| PREDICTED: putative hydrolase C777.06c [Vitis vinifera] gi|297743093|emb|CBI35960.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135033|ref|XP_002327550.1| predicted protein [Populus trichocarpa] gi|222836104|gb|EEE74525.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297829934|ref|XP_002882849.1| metallo-beta-lactamase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328689|gb|EFH59108.1| metallo-beta-lactamase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42564134|ref|NP_187996.2| metallo-beta-lactamase family protein [Arabidopsis thaliana] gi|62318851|dbj|BAD93913.1| hydrolase like protein [Arabidopsis thaliana] gi|63003856|gb|AAY25457.1| At3g13800 [Arabidopsis thaliana] gi|90093300|gb|ABD85163.1| At3g13800 [Arabidopsis thaliana] gi|110739543|dbj|BAF01680.1| hydrolase like protein [Arabidopsis thaliana] gi|332641895|gb|AEE75416.1| metallo-beta-lactamase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|363814330|ref|NP_001242806.1| uncharacterized protein LOC100786919 [Glycine max] gi|255644437|gb|ACU22723.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|9294602|dbj|BAB02903.1| hydrolase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218202019|gb|EEC84446.1| hypothetical protein OsI_31065 [Oryza sativa Indica Group] gi|222641433|gb|EEE69565.1| hypothetical protein OsJ_29077 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357513653|ref|XP_003627115.1| Hydrolase-like protein [Medicago truncatula] gi|355521137|gb|AET01591.1| Hydrolase-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2087974361 AT3G13800 "AT3G13800" [Arabido 0.915 0.512 0.833 3.9e-83
TAIR|locus:2009827324 AT1G30300 "AT1G30300" [Arabido 0.866 0.540 0.382 4e-26
TAIR|locus:2140695303 AT4G03610 [Arabidopsis thalian 0.841 0.561 0.377 6.1e-23
POMBASE|SPCC777.06c301 SPCC777.06c "hydrolase (predic 0.856 0.574 0.314 3.9e-21
TIGR_CMR|GSU_2465251 GSU_2465 "metallo-beta-lactama 0.831 0.669 0.303 3.8e-14
UNIPROTKB|Q5LPV6266 SPO2743 "Uncharacterized prote 0.752 0.571 0.311 2e-11
TIGR_CMR|SPO_2743266 SPO_2743 "conserved hypothetic 0.752 0.571 0.311 2e-11
TIGR_CMR|APH_1062263 APH_1062 "metallo-beta-lactama 0.866 0.665 0.252 7.5e-11
TIGR_CMR|ECH_0985263 ECH_0985 "metallo-beta-lactama 0.876 0.673 0.239 2e-06
TIGR_CMR|NSE_0580264 NSE_0580 "metallo-beta-lactama 0.594 0.454 0.284 2.2e-05
TAIR|locus:2087974 AT3G13800 "AT3G13800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 155/186 (83%), Positives = 170/186 (91%)

Query:    18 GLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEE-P 76
             GLDDLRDWTNNVQ HIPIY A+RD EVMKKTHYYLVDTS IIPGAAVSEL+F +I E+ P
Sbjct:   176 GLDDLRDWTNNVQPHIPIYTAIRDLEVMKKTHYYLVDTSVIIPGAAVSELEFKVIHEDQP 235

Query:    77 FTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPD 136
             F V DLKITPLPVWHG+ YRSLGFRFGN+CYISDVS+IPEETYP L+DC++LIMDALRPD
Sbjct:   236 FVVNDLKITPLPVWHGSNYRSLGFRFGNVCYISDVSDIPEETYPLLKDCDLLIMDALRPD 295

Query:   137 RSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 196
             RSS+THFGLPRALEEVRKI+PKRTLF GMMHLMDHEKV+EEL KL  TEGLDVQLSYDGL
Sbjct:   296 RSSATHFGLPRALEEVRKIKPKRTLFTGMMHLMDHEKVSEELEKLRNTEGLDVQLSYDGL 355

Query:   197 RVPVML 202
             RVP+ +
Sbjct:   356 RVPISI 361
GO:0003824 "catalytic activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0016787 "hydrolase activity" evidence=IEA
TAIR|locus:2009827 AT1G30300 "AT1G30300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140695 AT4G03610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC777.06c SPCC777.06c "hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2465 GSU_2465 "metallo-beta-lactamase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LPV6 SPO2743 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2743 SPO_2743 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1062 APH_1062 "metallo-beta-lactamase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0985 ECH_0985 "metallo-beta-lactamase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0580 NSE_0580 "metallo-beta-lactamase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034184001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (350 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00003532001
SubName- Full=Chromosome undetermined scaffold_145, whole genome shotgun sequence; (317 aa)
•       0.475

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PRK02113252 PRK02113, PRK02113, putative hydrolase; Provisiona 1e-25
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 1e-10
PRK11244250 PRK11244, phnP, carbon-phosphorus lyase complex ac 3e-10
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 7e-09
TIGR03307238 TIGR03307, PhnP, phosphonate metabolism protein Ph 1e-08
pfam07718279 pfam07718, Coatamer_beta_C, Coatamer beta C-termin 4e-04
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional Back     alignment and domain information 
 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 18  GLDDLRDWTNNVQRHIPIYVAMRDFEVMK-KTHYYLVDTSGIIPGAAVSELQFNIIDEEP 76
           GLDDLR +       +PIY      E ++ +  Y  V+ S   PG     L+  I  + P
Sbjct: 82  GLDDLRPFCR--FGEVPIYAEQYVAERLRSRMPYCFVEHS--YPGVPNIPLR-EIEPDRP 136

Query: 77  FTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPD 136
           F V   ++TPL V HG     LG+R G + YI+D+  +PEE Y  LQ  ++L+M+ALR  
Sbjct: 137 FLVNHTEVTPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI- 194

Query: 137 RSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 196
               TH  L  ALE +++I  K T  I M H +      E+ L         V  +YDGL
Sbjct: 195 APHPTHQSLEEALENIKRIGAKETYLIHMSHHIGLHADVEKELP------PHVHFAYDGL 248

Query: 197 RV 198
            +
Sbjct: 249 EI 250

Length = 252
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP Back     alignment and domain information
>gnl|CDD|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PRK02113252 putative hydrolase; Provisional 100.0
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 100.0
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 100.0
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.98
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.98
PRK02126334 ribonuclease Z; Provisional 99.97
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.97
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.97
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.96
PRK00055270 ribonuclease Z; Reviewed 99.95
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.94
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.9
PRK00685228 metal-dependent hydrolase; Provisional 99.85
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.83
PRK04286298 hypothetical protein; Provisional 99.82
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.79
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.7
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.65
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 99.55
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 99.54
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.2
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.04
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.03
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 98.96
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.8
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.53
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.46
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 98.45
KOG1361 481 consensus Predicted hydrolase involved in interstr 98.42
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.28
PLN02398329 hydroxyacylglutathione hydrolase 98.23
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 98.17
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.06
COG1782 637 Predicted metal-dependent RNase, consists of a met 97.95
KOG1136 501 consensus Predicted cleavage and polyadenylation s 97.94
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 97.84
PLN02469258 hydroxyacylglutathione hydrolase 97.81
KOG0813265 consensus Glyoxylase [General function prediction 97.68
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 97.64
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 97.61
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 97.48
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 97.33
PLN02962251 hydroxyacylglutathione hydrolase 97.28
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 97.24
PRK11539755 ComEC family competence protein; Provisional 97.0
KOG0814237 consensus Glyoxylase [General function prediction 96.96
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 95.7
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 95.05
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 92.47
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.3e-35  Score=236.00  Aligned_cols=181  Identities=35%  Similarity=0.544  Sum_probs=147.2

Q ss_pred             cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCEEE
Q 028873            6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKI   84 (202)
Q Consensus         6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I   84 (202)
                      -+|||.|.||++||+.++.+.  +.++++||||+++.+.+++...+.+.+. .+++  .+.++++++++ +++++++++|
T Consensus        70 I~lTH~H~DH~~gl~~l~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~i  144 (252)
T PRK02113         70 VLITHEHYDHVGGLDDLRPFC--RFGEVPIYAEQYVAERLRSRMPYCFVEH-SYPG--VPNIPLREIEPDRPFLVNHTEV  144 (252)
T ss_pred             EEECCCChhhhCCHHHHHHhc--cCCCceEEECHHHHHHHHhhCCeeeccC-CCCC--CcceeeEEcCCCCCEEECCeEE
Confidence            469999999999999997653  4578999999999999988766544322 1222  12466777764 7899999999


Q ss_pred             EEEEecCCCCceeeeEEEccEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEEEEec
Q 028873           85 TPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG  164 (202)
Q Consensus        85 ~~~~v~H~~~~~~~gy~i~~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~lvltH  164 (202)
                      ++++++|+. .+++||++++++|++||++++++.+++++++|+||+||++. ...++|+++++++++++++++|+++|||
T Consensus       145 ~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~-~~~~~H~t~~~a~~~~~~~~~k~l~l~H  222 (252)
T PRK02113        145 TPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENIKRIGAKETYLIH  222 (252)
T ss_pred             EEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC-CCCCCcCCHHHHHHHHHHhCCCEEEEEc
Confidence            999999974 38999999999999999988777889999999999999874 3568999999999999999999999999


Q ss_pred             CCCCCC-hHHHHHHHhhccccCCCcEEEeecCeEEee
Q 028873          165 MMHLMD-HEKVNEELLKLMETEGLDVQLSYDGLRVPV  200 (202)
Q Consensus       165 l~~~~~-~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l  200 (202)
                      +++++. .+++.++       ...++.+|+|||++++
T Consensus       223 ~s~~~~~~~~~~~~-------~~~~~~~A~Dg~~~~~  252 (252)
T PRK02113        223 MSHHIGLHADVEKE-------LPPHVHFAYDGLEIIF  252 (252)
T ss_pred             ccccchhHHHHHHh-------CCCCceeccCceEEeC
Confidence            999873 3333322       2236899999999964

>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3py6_A274 Crystal Structure Of A Beta-Lactamase-Like Protein 2e-15
3md7_A293 Crystal Structure Of A Beta-Lactamase-Like Protein 2e-15
3g1p_A258 Crystals Structure Of Phnp From E.Coli K-12 Length 2e-04
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From Brucella Melitensis Bound To Gmp Length = 274 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 18  GLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSEL--QFNIIDEE 75
           G+DDLR +  +  R + +Y        +  T  Y  +T     G++   +    +I  E 
Sbjct: 96  GIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETP---VGSSYPPILSMHDIAPET 152
Query: 76  PFTVQD----LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMD 131
           PF+++     ++  P    HG    SLGFR G++ Y +DVS  PE++  +++D ++LI+ 
Sbjct: 153 PFSIEGAGGAIRFEPFSQVHGD-IESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIG 211
Query: 132 ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQL 191
           AL+  R   +HF L  ALE + K+ PKR +   M   +D+E V  E    +E        
Sbjct: 212 ALQ-YRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPHHVEP------- 263
Query: 192 SYDGLRVPVML 202
            YDGLR  V +
Sbjct: 264 GYDGLRFEVAV 274
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound To Gmp From Brucella Melitensis Length = 293 Back     alignment and structure
>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12 Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 2e-51
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 2e-45
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 3e-14
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 2e-06
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293 Back     alignment and structure
 Score =  166 bits (422), Expect = 2e-51
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 17  MGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEP 76
            G+DDLR +  +  R + +Y        +  T  Y  +T        +  +  +I  E P
Sbjct: 114 HGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSM-HDIAPETP 172

Query: 77  FTVQ----DLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDA 132
           F+++     ++  P    HG    SLGFR G++ Y +DVS  PE++  +++D ++LI+ A
Sbjct: 173 FSIEGAGGAIRFEPFSQVHG-DIESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGA 231

Query: 133 LRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLS 192
           L+  R   +HF L  ALE + K+ PKR +   M   +D+E V  E           V+  
Sbjct: 232 LQY-RPHPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPH-------HVEPG 283

Query: 193 YDGLRVPVML 202
           YDGLR  V +
Sbjct: 284 YDGLRFEVAV 293
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 100.0
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.98
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.97
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.97
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.97
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.97
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.96
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.96
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.84
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.84
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.83
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.83
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.78
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.77
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.7
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.69
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.65
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.65
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.58
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.51
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.46
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.36
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.35
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.35
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.33
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.12
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.89
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 98.87
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 98.83
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 98.78
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 98.74
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 98.68
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 98.61
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 98.6
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 98.58
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 98.57
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 98.54
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.46
3h3e_A267 Uncharacterized protein TM1679; structural genomic 98.46
4efz_A298 Metallo-beta-lactamase family protein; structural 98.46
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 98.43
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 98.42
1xm8_A254 Glyoxalase II; structural genomics, protein struct 98.39
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 98.37
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 98.35
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 98.33
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 98.3
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.29
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 98.29
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.22
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 98.22
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.2
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 98.18
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 98.15
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 98.13
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 98.09
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.09
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.07
3r2u_A 466 Metallo-beta-lactamase family protein; structural 98.05
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.05
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 98.05
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.01
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 97.9
1ztc_A221 Hypothetical protein TM0894; structural genomics, 97.85
3esh_A280 Protein similar to metal-dependent hydrolase; stru 97.76
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 97.65
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 97.6
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 97.44
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 97.18
2p97_A201 Hypothetical protein; putative metal-dependent hyd 96.8
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 95.83
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
Probab=100.00  E-value=6.4e-35  Score=239.47  Aligned_cols=186  Identities=30%  Similarity=0.491  Sum_probs=155.1

Q ss_pred             cchhhhhccccCChhhhhhhhccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCC---
Q 028873            6 STIALFVGFLPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQD---   81 (202)
Q Consensus         6 ~~i~h~H~DHi~GL~~l~~~~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---   81 (202)
                      -+|||.|.||++||+.|+.+...++.+++||+++++.+.+++.+++.+....  .....+.++++.+++ +++++++   
T Consensus       103 IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~~g~~~~  180 (293)
T 3md7_A          103 AVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMHDIAPETPFSIEGAGG  180 (293)
T ss_dssp             EECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCT--TCCCCCCEEEEECCTTCCEEECCTTC
T ss_pred             EEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhcccc--ccCCCCceEEEEcCCCCcEEECCCCC
Confidence            4789999999999999987544456789999999999999887766543210  001123467788864 7899999   


Q ss_pred             -EEEEEEEecCCCCceeeeEEEccEEEeCCCCCCCcchhhhccCCCEEEEeccCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 028873           82 -LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRT  160 (202)
Q Consensus        82 -~~I~~~~v~H~~~~~~~gy~i~~~~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~~~~~H~~~~ea~~~~~~~~~k~l  160 (202)
                       ++|++++++|+. .+++||+|++++|+|||++++++++++++++|+||+||++.. .+++|+++++++++++++++|++
T Consensus       181 ~~~v~~~~~~H~~-~~~~g~~i~~~~y~gDt~~~~~~~~~~~~~~Dlli~e~~~~~-~~~~H~~~~~a~~~~~~~~~k~l  258 (293)
T 3md7_A          181 AIRFEPFSQVHGD-IESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYR-PHPSHFSLGEALEWIEKLSPKRA  258 (293)
T ss_dssp             CEEEEEEEEEETT-EEEEEEEETTEEEECSCSBCCGGGHHHHTTCSEEEEECCCSS-CBTTBCCHHHHHHHHHHHCCSEE
T ss_pred             cEEEEEEEecCCC-CCEEEEEEeEEEEECCCCCCCHHHHHHhcCCCEEEEeCccCC-CCCCCCCHHHHHHHHHHcCCCEE
Confidence             999999999984 389999999999999999887789999999999999998764 67899999999999999999999


Q ss_pred             EEecCCCCCChHHHHHHHhhccccCCCcEEEeecCeEEeecC
Q 028873          161 LFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML  202 (202)
Q Consensus       161 vltHl~~~~~~~~~~~~~~~~~~~~~~~v~~A~DG~~i~l~~  202 (202)
                      ++||++++++++++.+++.       .++.+|+|||+|+|+.
T Consensus       259 vl~H~~~~~~~~~~~~~~~-------~~v~~a~DG~~i~l~~  293 (293)
T 3md7_A          259 ILTHMHVPLDYETVMRETP-------HHVEPGYDGLRFEVAV  293 (293)
T ss_dssp             EEESBCTTCCHHHHHHHSC-------TTEEECCTTCEEEECC
T ss_pred             EEECCCCCCCHHHHHhhcC-------CCcEEeeCCcEEEecC
Confidence            9999999998776654433       3899999999999863
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 2e-08
d1y44a1307 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci 0.003
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

 Score = 50.9 bits (120), Expect = 2e-08
 Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 41/218 (18%)

Query: 17  MGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEP 76
            GL  LR+          ++      + +          S    G   + ++        
Sbjct: 95  TGLLSLREG-----CPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEG-SFVI 148

Query: 77  FTVQDLKITPLPVWHGAGYR-----------------SLGFRFGNICYISDVSEIPEETY 119
               +LK TP P+   A                          G + Y   + ++ E+  
Sbjct: 149 DACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLL 208

Query: 120 PFLQDCEILIMDALRPD----------------RSSSTHFGLPRALEEVRKIQPKRTLFI 163
             +   + L++D    +                       G    LE +     +R + I
Sbjct: 209 AMMHGADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLI 268

Query: 164 GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 201
            + +       N      +   G  V++++DG+ + ++
Sbjct: 269 HINNTNPILDENSPERAEVLRRG--VEVAFDGMSIELL 304
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 100.0
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.97
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.93
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.93
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.76
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.39
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.05
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.01
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 98.7
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.07
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.06
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 98.05
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.89
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 97.88
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 97.87
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 97.79
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 97.73
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.55
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 97.51
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 97.44
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 97.4
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.39
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 97.35
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 97.09
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 97.08
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 97.07
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 96.99
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 96.81
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 96.8
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 90.85
d2i7ta1451 Cleavage and polyadenylation specificity factor su 90.69
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 87.26
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 85.46
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.3e-34  Score=230.54  Aligned_cols=182  Identities=16%  Similarity=0.209  Sum_probs=144.4

Q ss_pred             cchhhhhccccCChhhhhhh--hccCCCceeeeeCHHHHHHHHhcCceeeecCCCCCCCcccceEEEeeCC-CceEeCCE
Q 028873            6 STIALFVGFLPMGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDL   82 (202)
Q Consensus         6 ~~i~h~H~DHi~GL~~l~~~--~~~~~~~l~iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   82 (202)
                      -+|||+|+||++||+.+...  ...+.+++.||||+++.+.++..+.+....     .  ...+.++++++ ..++..++
T Consensus        59 I~iTH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~-----~--~~~~~~~~i~~~~~~~~~~~  131 (307)
T d1y44a1          59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTH-----L--TYPLAIQEIEEGIVFEDDQF  131 (307)
T ss_dssp             EECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCC-----C--SSCEEEEECCSEEEEECSSE
T ss_pred             EEEcccchHhccchhhhhhhhcccCCCCcccccCCcchhHHHHHHhhhcccc-----c--CcceeEEEccCCceEeccCc
Confidence            36999999999999998753  345678999999999988877644332211     1  12356777764 56777899


Q ss_pred             EEEEEEecCCCCceeeeEEEc------------------------------------------------------cEEEe
Q 028873           83 KITPLPVWHGAGYRSLGFRFG------------------------------------------------------NICYI  108 (202)
Q Consensus        83 ~I~~~~v~H~~~~~~~gy~i~------------------------------------------------------~~~y~  108 (202)
                      +|+++++.|..  +++||+++                                                      +++|+
T Consensus       132 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~g~~~~~s  209 (307)
T d1y44a1         132 IVTAVSVIHGV--EAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFS  209 (307)
T ss_dssp             EEEEEECBSSS--SBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEEC
T ss_pred             eEEEeeecccc--ccccccccccccccchhhhhhhhcCCCCcchhhhcccccEEEEeeeEEeecceeeeccccccccccc
Confidence            99999999988  89999873                                                      47899


Q ss_pred             CCCCCCCcchhhhccCCCEEEEeccCCCC-----CCCCCCCHHHHHHHHHHcCCCEEEEecCCCCCChHH---HHHHHhh
Q 028873          109 SDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEK---VNEELLK  180 (202)
Q Consensus       109 ~Dt~~~~~~~~~~~~~~DlLi~e~~~~~~-----~~~~H~~~~ea~~~~~~~~~k~lvltHl~~~~~~~~---~~~~~~~  180 (202)
                      +||.+. +.++++++|+|+||+||++.+.     ..++|+++++++++++++++|+++|||++++++.+.   +.+++++
T Consensus       210 gDt~~~-~~l~~~~~~~DlLi~E~~~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvltH~s~r~~~~~~~~~~~e~~~  288 (307)
T d1y44a1         210 GDTRVS-DKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVD  288 (307)
T ss_dssp             CSCBCC-HHHHHHTTTCSEEEEECCBCTTCHHHHHHTTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHH
T ss_pred             ccccch-HHHHHhhcCCceEEEeccccchhhhhcccCCCCCHHHHHHHHHHcCCCEEEEECcCcccCCchHHHHHHHHHH
Confidence            999976 4799999999999999999874     237899999999999999999999999999885433   4444443


Q ss_pred             ccccCCCcEEEeecCeEEeec
Q 028873          181 LMETEGLDVQLSYDGLRVPVM  201 (202)
Q Consensus       181 ~~~~~~~~v~~A~DG~~i~l~  201 (202)
                         .+. ++.+|+|||+|+|.
T Consensus       289 ---~~~-~~~~a~Dg~~i~i~  305 (307)
T d1y44a1         289 ---VFP-NSVAAYDFLEVNVP  305 (307)
T ss_dssp             ---HCS-SEEECCTTCEEECC
T ss_pred             ---HCC-CcEEccCCCEEecC
Confidence               233 78899999999874
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure