Citrus Sinensis ID: 028891

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHc
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
MSATKEFKEVLTMRTENLKVHESRRQLfsstaskdsanpfvrqrplatrsaaastssspppwangspsssqlfprkqdgesqpllQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
msatkefkEVLTmrtenlkvhesrrqlfsstaskdsanpfVRQRPLATRsaaastssspppwangSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQrplatrsaaastssspppWANGSPSSSQLFPRKQDGESQPLLqqqqhhqqqqhhqqqqqqqMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWlmikiffvlifflmiflffvA
***************************************************************************************************************************ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV*
*SATKEFKEVLTM******************************************************************************************************RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQ****************************************************************LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
***TKEFKEVLTMRTENLKVHESRR*********************************************************************QHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
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MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q9LK09347 Syntaxin-32 OS=Arabidopsi yes no 0.960 0.559 0.754 9e-72
Q9FFK1336 Syntaxin-31 OS=Arabidopsi no no 0.945 0.568 0.488 3e-43
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.792 0.342 0.383 7e-24
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.757 0.430 0.378 1e-22
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.737 0.419 0.375 2e-22
Q08851355 Syntaxin-5 OS=Rattus norv no no 0.762 0.433 0.391 2e-22
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.762 0.433 0.380 5e-22
O13644309 Integral membrane protein yes no 0.821 0.537 0.352 4e-21
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.772 0.377 0.357 3e-20
Q01590340 Integral membrane protein yes no 0.366 0.217 0.540 1e-17
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function desciption
 Score =  269 bits (688), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 169/204 (82%), Gaps = 10/204 (4%)

Query: 1   MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPP 60
           M  TKEFK+VLTMRTEN+KVHESRRQLFSS ASK+S NPFVRQRPLA ++AA  + S P 
Sbjct: 152 MDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAA--SESVPL 209

Query: 61  PWANGSPSSS-QLFPRK-QDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAE 118
           PWANGS SSS QL P K  +GES PLLQQ Q  QQQQ      QQQMVPLQD+YMQ RAE
Sbjct: 210 PWANGSSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQ------QQQMVPLQDTYMQGRAE 263

Query: 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISS 178
           AL  VESTIHEL +IF QLAT+VSQQGEIAIRID+NM+DT+ANVEGAQ  L +YLNSISS
Sbjct: 264 ALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISS 323

Query: 179 NRWLMIKIFFVLIFFLMIFLFFVA 202
           NRWLM+KIFFVLI FLMIFLFFVA
Sbjct: 324 NRWLMMKIFFVLIAFLMIFLFFVA 347
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
255549032 346 syntaxin, putative [Ricinus communis] gi 0.950 0.554 0.798 4e-76
225445330 338 PREDICTED: syntaxin-32 [Vitis vinifera] 0.945 0.565 0.787 4e-76
225430105 340 PREDICTED: syntaxin-32 [Vitis vinifera] 0.905 0.538 0.859 5e-76
356515506 339 PREDICTED: syntaxin-32-like [Glycine max 0.886 0.528 0.818 5e-74
356507790 337 PREDICTED: syntaxin-32-like [Glycine max 0.891 0.534 0.812 6e-74
356507792 339 PREDICTED: syntaxin-32-like [Glycine max 0.891 0.530 0.807 2e-71
30687459 347 syntaxin-32 [Arabidopsis thaliana] gi|28 0.960 0.559 0.754 5e-70
334185588 361 syntaxin-32 [Arabidopsis thaliana] gi|33 0.960 0.537 0.754 5e-70
388499590 345 unknown [Lotus japonicus] 0.900 0.527 0.793 6e-70
356515504 336 PREDICTED: syntaxin-32-like [Glycine max 0.846 0.508 0.804 8e-69
>gi|255549032|ref|XP_002515572.1| syntaxin, putative [Ricinus communis] gi|223545516|gb|EEF47021.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/203 (79%), Positives = 174/203 (85%), Gaps = 11/203 (5%)

Query: 1   MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPP 60
           MSATKEFKEVLTMRTENLKVHE+RRQLFSSTASKDS NPFVRQRPLA+RS A ++ + PP
Sbjct: 154 MSATKEFKEVLTMRTENLKVHENRRQLFSSTASKDSTNPFVRQRPLASRSTANASPAPPP 213

Query: 61  PWANGSPSSSQLFPRKQ-DGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEA 119
           PWANGS SSSQLFP KQ DGESQ               Q+QQQQQMVPLQDSYMQSRAEA
Sbjct: 214 PWANGSASSSQLFPSKQTDGESQ----------PLLQQQRQQQQQMVPLQDSYMQSRAEA 263

Query: 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 179
           L NVESTIHEL NIF QLAT+VSQQGE+AIRIDENMDDT++NVEGAQ  L++YLNSISSN
Sbjct: 264 LHNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLSNVEGAQNQLVRYLNSISSN 323

Query: 180 RWLMIKIFFVLIFFLMIFLFFVA 202
           RWLMIKIFFVLI FLMIFLFFVA
Sbjct: 324 RWLMIKIFFVLIVFLMIFLFFVA 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445330|ref|XP_002284775.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|297738869|emb|CBI28114.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430105|ref|XP_002284618.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|296081933|emb|CBI20938.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515506|ref|XP_003526441.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|356507790|ref|XP_003522647.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|356507792|ref|XP_003522648.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|30687459|ref|NP_189078.2| syntaxin-32 [Arabidopsis thaliana] gi|28380163|sp|Q9LK09.1|SYP32_ARATH RecName: Full=Syntaxin-32; Short=AtSYP32 gi|11994697|dbj|BAB02935.1| probable t-SNARE (soluble NSF attachment protein receptor) SED5; ER to Golgi transport [Arabidopsis thaliana] gi|28393777|gb|AAO42298.1| putative syntaxin SYP32 [Arabidopsis thaliana] gi|30793955|gb|AAP40429.1| putative syntaxin SYP32 [Arabidopsis thaliana] gi|332643371|gb|AEE76892.1| syntaxin-32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185588|ref|NP_001189961.1| syntaxin-32 [Arabidopsis thaliana] gi|332643372|gb|AEE76893.1| syntaxin-32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388499590|gb|AFK37861.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356515504|ref|XP_003526440.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.376 0.226 0.657 3e-31
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.381 0.254 0.597 1.9e-26
ZFIN|ZDB-GENE-030131-1825347 stx5al "syntaxin 5A, like" [Da 0.381 0.221 0.532 4.7e-24
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.381 0.297 0.532 1.3e-23
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.381 0.216 0.532 5.7e-23
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.381 0.216 0.532 5.7e-23
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.381 0.216 0.532 1.2e-22
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.381 0.216 0.532 1.2e-22
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.381 0.216 0.532 1.2e-22
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.381 0.216 0.519 1.3e-22
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 252 (93.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query:   106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165
             VP Q++Y QSRA AL +VES I EL  IF QLAT+V+QQGE+AIRID+NMD+++ NVEGA
Sbjct:   240 VPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGA 299

Query:   166 QGALLKYLNSISSNRW 181
             + ALL++L  ISSNRW
Sbjct:   300 RSALLQHLTRISSNRW 315
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1825 stx5al "syntaxin 5A, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LK09SYP32_ARATHNo assigned EC number0.75490.96030.5590yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032536001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (411 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034036001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (218 aa)
    ••• 0.854
GSVIVG00007496001
SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (123 aa)
    ••• 0.838
GSVIVG00003818001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (224 aa)
    ••• 0.804
GSVIVG00020498001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (170 aa)
     •• 0.803

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
pfam0573962 pfam05739, SNARE, SNARE domain 2e-12
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 1e-10
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 2e-10
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-09
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 3e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 3e-04
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 116 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175
           R EAL+ +ES+I EL  +F  +   V +QGE+  RID+N+D+T + VE A   L K    
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 176 IS 177
             
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.86
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.85
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.85
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.79
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.66
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.56
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.41
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.36
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.06
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.9
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.5
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 98.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.61
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.59
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.52
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.37
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 97.06
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.92
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.39
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 96.13
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 96.01
KOG2678244 consensus Predicted membrane protein [Function unk 95.02
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 94.57
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 94.03
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 93.06
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 93.02
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 92.02
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 91.77
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 91.27
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 91.21
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 90.33
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 90.0
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 89.51
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 88.55
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 88.14
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 86.69
PF14992280 TMCO5: TMCO5 family 86.36
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 85.94
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-43  Score=302.94  Aligned_cols=179  Identities=42%  Similarity=0.654  Sum_probs=137.6

Q ss_pred             CccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCCCcccCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 028891            1 MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGE   80 (202)
Q Consensus         1 ~~~s~~Fk~vLe~Rt~n~k~~~~Rr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (202)
                      +|++++||+|||+||+|||++++||++|+.++++....|.      ++..+..+  +.+.....-...+.++.+...++.
T Consensus       133 a~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~------~n~~a~~~--~~~~l~~~~~~~sq~~~~ln~gd~  204 (311)
T KOG0812|consen  133 ANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPV------SNSAARLH--PLKLLVDPKDEASQDVESLNMGDS  204 (311)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCccc------CcccccCC--chhhhcCchhhcccccccccccCC
Confidence            5899999999999999999999999999997654322221      11000000  000000000001112111111111


Q ss_pred             CCchhhHHhhhHhhhhhhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028891           81 SQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA  160 (202)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~  160 (202)
                         +            ..+++|++++|+.++|+++|.+++++||++|.||++||.+||+||.||||+|.|||+||+++..
T Consensus       205 ---~------------~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~l  269 (311)
T KOG0812|consen  205 ---S------------NPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDL  269 (311)
T ss_pred             ---C------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence               1            1126788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhC
Q 028891          161 NVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA  202 (202)
Q Consensus       161 nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~iifvlf~a  202 (202)
                      ||++|+.+|.||+.+.++|||+|++||+|+||||++||||+|
T Consensus       270 nI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  270 NIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLFLA  311 (311)
T ss_pred             hhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14992 TMCO5: TMCO5 family Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-21
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 1e-17
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-14
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 3e-14
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-13
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-13
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 4e-13
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 9e-12
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 1e-11
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-04
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 83.3 bits (206), Expect = 3e-21
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 95  QHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDEN 154
            H      +Q +    S +++R   +  +E++I EL ++F  +A LV  QGE+  RI+ N
Sbjct: 2   SHMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57

Query: 155 MDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFV 201
           ++  +  VE A     K +   S  R   I I    +   +I    +
Sbjct: 58  VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.92
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.88
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.86
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.83
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.83
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.79
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.79
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.69
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.64
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.07
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 98.59
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 98.26
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 98.2
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 98.13
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 98.12
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.9
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.85
3b5n_D64 Protein transport protein SEC9; snare complex, syn 97.71
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.58
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.78
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.67
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.91
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.38
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 94.55
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 94.35
2nps_C81 Vesicle transport through interaction with T- snar 94.18
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 88.61
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 88.44
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 81.07
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
Probab=99.92  E-value=1.2e-24  Score=165.46  Aligned_cols=79  Identities=30%  Similarity=0.378  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 028891          109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIF  187 (202)
Q Consensus       109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if  187 (202)
                      ...++++|++++++||++|.||++||.+|+.||.+||++||+||+|++.|..||++|+++|.||.+|++++|+++|+++
T Consensus        12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l   90 (109)
T 3hd7_B           12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII   90 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence            5779999999999999999999999999999999999999999999999999999999999999999987765444333
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 7e-08
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 13/68 (19%), Positives = 27/68 (39%)

Query: 77  QDGESQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQ 136
           +D     +          Q      ++       + +Q+R + L  +E ++ EL  +FN 
Sbjct: 128 EDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFND 187

Query: 137 LATLVSQQ 144
           +  LV +Q
Sbjct: 188 MEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 98.55
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.3e-08  Score=79.21  Aligned_cols=40  Identities=28%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891          106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG  145 (202)
Q Consensus       106 ~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQg  145 (202)
                      ......++++|+++|.+||++|.||++||.+||.||.+|.
T Consensus       157 ~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            3457889999999999999999999999999999999883