Citrus Sinensis ID: 028900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MGGDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mggdwfktfvcqkkvkvgsskqvkgssasakskgfkwkkplgkessifaigstlgmpveDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLeidwsggpeTMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Flexible Loop (DISEMBL)
mggdwfktfvcqkkvkvgsskqvkgssasakskgfkwkkplgkESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKgtirlqgvsqrhsvqkqatttlsylhtWSKLQAEIRARRLCMVKEgrlrqkklenqlkldaklnsleidwsggpeTMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Low Complexity Region (SEG)
MGGDWFKTFVCQkkvkvgsskqvkgssasakskgfkwkkPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Disordered region (IsUnstruct)
****WFKTFVCQKKV*****************************SSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQ**L**QLKLDAKLNSLEIDW*********************VKRERAMAYAFSHQVCQTLTYTLCA***
Disordered Region (DISOPRED)
*GGDWFKT****************************************************VAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR*******************************************************ERAMAYAF*****************
Disordered Region (DISEMBL)
MGGDWFKTFVCQKKV*********************WKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRL*************TTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Disordered Region (DISPRO)
***DWFKTFVCQKKV***************************************GMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLN**E*DWSGGPETMEEILSRINQREKAAVKRERAMAYAFSHQVCQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAMAYAFSHQVCQTLTYTLCAASV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.613	0.185	0.385	3e-18
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.628	0.279	0.368	3e-14
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.316	0.109	0.437	5e-06

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/140 (38%), Positives = 85/140 (60%), Gaps = 16/140 (11%)

Query: 56  MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQ 115
           +PV+  +A +IQ AFR Y ARK+FR LKG +RLQGV + +SV++Q    + Y+    ++Q
Sbjct: 318 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 377

Query: 116 AEIRARRLCMVKEGRLRQKKLENQLKL---DAKLNSLEI---DWSGGPETMEEILSRINQ 169
           ++I++RR+          K LENQ ++   +AK  + E    +W     T EE  SR  +
Sbjct: 378 SQIQSRRI----------KMLENQAQVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQR 427

Query: 170 REKAAVKRERAMAYAFSHQV 189
           +  A +KRER+MAYA+S ++
Sbjct: 428 KTDAIIKRERSMAYAYSRKL 447

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 86/133 (64%), Gaps = 6/133 (4%)

Query: 59  EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
           E+ AAI IQ+ FR + AR+  + ++G  RL+ + +   VQ+QA  TL  + T S++Q++I
Sbjct: 107 EEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQI 166

Query: 119 RARRLCMVKEGRLRQKKLENQLKLDAK-LNSLEI--DWSGGPETMEEILSRINQREKAAV 175
           R+RR+ M +E + R K+L   L+  AK L  L+   +W+   ++ E++ + +  + +A +
Sbjct: 167 RSRRIRMSEENQARHKQL---LQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATM 223

Query: 176 KRERAMAYAFSHQ 188
           +RERA+AYAF+HQ
Sbjct: 224 RRERALAYAFTHQ 236

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 60  DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
           ++AA  +Q AFR Y AR+ F  LKG IRLQ + + H V++QA  TL  +    +LQA  R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172

Query: 120 ARRL 123
            R +
Sbjct: 173 GREI 176

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224079131	312	predicted protein [Populus trichocarpa]	0.930	0.602	0.697	6e-71
118489299	312	unknown [Populus trichocarpa x Populus d	0.930	0.602	0.692	9e-70
224116948	312	predicted protein [Populus trichocarpa]	0.930	0.602	0.702	4e-69
225443514	306	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.930	0.614	0.661	1e-66
255563056	310	calmodulin binding protein, putative [Ri	0.930	0.606	0.666	3e-66
225461608	309	PREDICTED: protein IQ-DOMAIN 1 [Vitis vi	0.925	0.605	0.607	2e-56
147777594	309	hypothetical protein VITISV_013534 [Viti	0.925	0.605	0.602	1e-55
356555392	308	PREDICTED: protein IQ-DOMAIN 1-like [Gly	0.930	0.610	0.589	2e-54
224056547	302	predicted protein [Populus trichocarpa]	0.920	0.615	0.559	3e-53
449434304	326	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.930	0.576	0.585	4e-53

>gi|224079131|ref|XP_002305760.1| predicted protein [Populus trichocarpa] gi|222848724|gb|EEE86271.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 162/195 (83%), Gaps = 7/195 (3%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG GDWFKT +  KKVK  SSKQ KGS+ SAKS GFKWK  L KES+IFA GS+      
Sbjct: 1   MGSGDWFKTMISMKKVKDDSSKQPKGSTTSAKSNGFKWKNKLRKESAIFANGSSRANPRF 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           + MPVEDVAA +IQTAFRAY ARKT RRLKGT+RLQ +++ +SV+KQA TTL+Y+H+WS+
Sbjct: 61  IDMPVEDVAATQIQTAFRAYMARKTLRRLKGTVRLQIITKNYSVKKQAATTLNYIHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
           +QA+IRARRLCMV E RLRQKKLENQLKL+AKL+ LE++W GG +TMEE L+RI+ RE+A
Sbjct: 121 IQAQIRARRLCMVTESRLRQKKLENQLKLEAKLHDLEVEWCGGFDTMEETLARIHLREEA 180

Query: 174 AVKRERAMAYAFSHQ 188
           AVKRERAMAYAFSHQ
Sbjct: 181 AVKRERAMAYAFSHQ 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489299|gb|ABK96454.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 160/195 (82%), Gaps = 7/195 (3%)

Query: 1   MGG-DWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG  DWFKT +  KKVK  SSKQ KG + SAKS GFKWK  L KES+IFA GS+      
Sbjct: 1   MGSVDWFKTMISMKKVKDDSSKQPKGCTTSAKSNGFKWKNKLRKESAIFANGSSRANPRF 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           + MPVEDVAA +IQTAFRAY ARKT RRLKGT+RLQ +++ +SV+KQA TTL+YLH+WS+
Sbjct: 61  IDMPVEDVAATQIQTAFRAYMARKTLRRLKGTVRLQIITKNYSVKKQAATTLNYLHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
           +QA+IRARRLCMV E RLRQKKLENQLKL+AKL+ LE++W GG +TMEE L+RI+ RE+A
Sbjct: 121 IQAQIRARRLCMVTESRLRQKKLENQLKLEAKLHDLEVEWCGGFDTMEETLARIHLREEA 180

Query: 174 AVKRERAMAYAFSHQ 188
           AVKRERAMAYAFSHQ
Sbjct: 181 AVKRERAMAYAFSHQ 195

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116948|ref|XP_002317436.1| predicted protein [Populus trichocarpa] gi|222860501|gb|EEE98048.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 159/195 (81%), Gaps = 7/195 (3%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG GDWFKT +  KKVK  SSKQ KGSS S KS GFKWK  L KES+ FA GS       
Sbjct: 1   MGSGDWFKTIISIKKVKDDSSKQAKGSSTSEKSNGFKWKHKLQKESASFANGSNRANPRF 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
             MPVED+AA RIQTAFRAY+ARKT R LKG +RLQ ++Q +S +KQA TTL+YLH+WS+
Sbjct: 61  PDMPVEDLAATRIQTAFRAYRARKTLRCLKGKVRLQIITQNYSFKKQAATTLNYLHSWSQ 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
           +QA+IRARRL MV EGRLRQKKLENQLKL+AKL+ LE++WSGG ETME+IL+RI+QRE+A
Sbjct: 121 IQAQIRARRLFMVTEGRLRQKKLENQLKLEAKLHDLEVEWSGGCETMEKILARIHQREEA 180

Query: 174 AVKRERAMAYAFSHQ 188
           AVKRERAMAYAFSHQ
Sbjct: 181 AVKRERAMAYAFSHQ 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443514|ref|XP_002272018.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|297740471|emb|CBI30653.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/195 (66%), Positives = 156/195 (80%), Gaps = 7/195 (3%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGST------ 53
           MG GDWFK  +  KKVK  +S++ KG+S  AKS GFKW+    K S+ F+ GST      
Sbjct: 1   MGSGDWFKAILSSKKVKGDNSRKTKGTSTDAKSNGFKWRSRTLKGSTGFSYGSTSGNPGV 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
           LG+PVED+AA RIQTAFRA+ ARKT RRLKG +RLQ ++Q   V+KQA+TTLSYL +WS+
Sbjct: 61  LGIPVEDIAATRIQTAFRAFMARKTLRRLKGIVRLQKLTQGDCVRKQASTTLSYLSSWSR 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
           +Q +IRARRLCMV EGR+RQKKLENQLKLDAKL+ LE++W GGPETMEEIL+RI  RE+A
Sbjct: 121 IQTQIRARRLCMVTEGRIRQKKLENQLKLDAKLHDLEVEWCGGPETMEEILARIYHREEA 180

Query: 174 AVKRERAMAYAFSHQ 188
           AVKRERA+AYAFSHQ
Sbjct: 181 AVKRERALAYAFSHQ 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563056|ref|XP_002522532.1| calmodulin binding protein, putative [Ricinus communis] gi|223538223|gb|EEF39832.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLGMPVE 59
           MG GDWFKT +  KKVK  SSK+VK SSA+AKS GFKWK    K+S+       L MPVE
Sbjct: 1   MGSGDWFKTIISLKKVKDDSSKRVKDSSAAAKSNGFKWKNQPRKKSATSCNPRVLDMPVE 60

Query: 60  DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
           D AA RIQTAFRAY ARK+  RLKG +RLQ ++Q +S++KQA TTL++LH+WSK+Q +IR
Sbjct: 61  DFAATRIQTAFRAYMARKSLHRLKGAVRLQNLTQNYSIKKQAATTLNHLHSWSKIQGQIR 120

Query: 120 ARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRER 179
            RR CMV+EGRLRQK+LENQLKL+A+L+ LE++WS G ETMEE L+RI+QRE+AAVKRER
Sbjct: 121 DRRHCMVREGRLRQKRLENQLKLEAELHHLEVEWSDGSETMEETLARIHQREEAAVKRER 180

Query: 180 AMAYAFSHQ 188
           AMAYAFSHQ
Sbjct: 181 AMAYAFSHQ 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461608|ref|XP_002282973.1| PREDICTED: protein IQ-DOMAIN 1 [Vitis vinifera] gi|302142924|emb|CBI20219.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/196 (60%), Positives = 145/196 (73%), Gaps = 9/196 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLG---- 55
           MG G WFK  +  +KVK   SK  K  S + KS   K K  + KESS  A G+ LG    
Sbjct: 1   MGAGGWFKMIISLRKVKEDRSKPAKVHSTTEKSSNSKGKHHIDKESSSLANGA-LGKSAG 59

Query: 56  ---MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWS 112
              +PVE+ AAI+IQT +RAYKARK   RL+GT+R Q ++Q   V+KQA+TTLSY+H WS
Sbjct: 60  VHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWS 119

Query: 113 KLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREK 172
           ++QA+I ARR CM +EGR+RQKKLENQLKL+AKL+ LE++W GG ETMEEILSRI QRE+
Sbjct: 120 RIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRIQQREE 179

Query: 173 AAVKRERAMAYAFSHQ 188
           AAVKRERAMAYAFSHQ
Sbjct: 180 AAVKRERAMAYAFSHQ 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777594|emb|CAN67034.1| hypothetical protein VITISV_013534 [Vitis vinifera]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 143/196 (72%), Gaps = 9/196 (4%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGSTLG---- 55
           MG G WFK  +  +KVK   SK  K  S + KS   K K    KE S  A G+ LG    
Sbjct: 1   MGAGGWFKMIISLRKVKXDRSKPAKVHSTTEKSSNSKGKHHTDKEXSSLANGA-LGKSAG 59

Query: 56  ---MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWS 112
              +PVE+ AAI+IQT +RAYKARK   RL+GT+R Q ++Q   V+KQA+TTLSY+H WS
Sbjct: 60  VHKIPVEERAAIQIQTTYRAYKARKNLHRLRGTVRFQVMTQGDIVRKQASTTLSYIHAWS 119

Query: 113 KLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREK 172
           ++QA+I ARR CM +EGR+RQKKLENQLKL+AKL+ LE++W GG ETMEEILSRI QRE+
Sbjct: 120 RIQAQISARRHCMAQEGRVRQKKLENQLKLEAKLHELEVEWCGGSETMEEILSRIQQREE 179

Query: 173 AAVKRERAMAYAFSHQ 188
           AAVKRERAMAYAFSHQ
Sbjct: 180 AAVKRERAMAYAFSHQ 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555392|ref|XP_003546016.1| PREDICTED: protein IQ-DOMAIN 1-like [Glycine max]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 143/195 (73%), Gaps = 7/195 (3%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIG------ST 53
           MG GDWFKT +  +K K G SK+ KG     K    K     GKESS    G       +
Sbjct: 1   MGSGDWFKTIISLRKSKEGRSKKAKGILTQEKLNASKSNNYPGKESSGLTNGIKSENLVS 60

Query: 54  LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSK 113
            G+ VE +AA RIQTAFRAYKARK  RR+KG  +L+ +++  SV+KQA+T ++YLH+WSK
Sbjct: 61  AGVSVETIAATRIQTAFRAYKARKALRRMKGFTKLKILTEGFSVKKQASTAVTYLHSWSK 120

Query: 114 LQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
           +QAEIRARR+CMV E R+R+KKLE+QLKL+AKL+ LE++W GG ETMEEIL RI+ RE+A
Sbjct: 121 IQAEIRARRICMVTEDRIRRKKLESQLKLEAKLHDLEVEWCGGSETMEEILGRIHHREEA 180

Query: 174 AVKRERAMAYAFSHQ 188
           AVKRERAMAYAFSHQ
Sbjct: 181 AVKRERAMAYAFSHQ 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056547|ref|XP_002298904.1| predicted protein [Populus trichocarpa] gi|222846162|gb|EEE83709.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 137/193 (70%), Gaps = 7/193 (3%)

Query: 3   GDWFKTFVCQKKVKVGSSKQVKGSSASAKSKGFKWKKPLGKESSIFAIGS-------TLG 55
           G+W K+ +  +K K  +SK+VK  SA+ K+ G K   P   ESS  A G          G
Sbjct: 7   GNWLKSIIRTRKAKKDASKKVKVHSATEKANGSKESSPAHGESSNLANGDLESNIHVAPG 66

Query: 56  MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQ 115
           +  E +AA+RIQ AFRAYKARK   RLKG +R   +   H  QKQA++TLS++H+WS +Q
Sbjct: 67  LSAEYIAAVRIQDAFRAYKARKAMHRLKGAVRFNVLIHGHDTQKQASSTLSHIHSWSNIQ 126

Query: 116 AEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAV 175
           A+IRARR  MV EGR++QKKLENQLKL+A+L  +E++W GG +TMEEILSRI QRE+AAV
Sbjct: 127 AQIRARRHHMVTEGRIKQKKLENQLKLEARLQEIEVEWCGGSDTMEEILSRIQQREEAAV 186

Query: 176 KRERAMAYAFSHQ 188
           KRERAMAYAFSHQ
Sbjct: 187 KRERAMAYAFSHQ 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434304|ref|XP_004134936.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 145/200 (72%), Gaps = 12/200 (6%)

Query: 1   MG-GDWFKTFVCQKKVKVGSSKQVK-----GSSASAKSKGFKWKKPLGKESSIF----AI 50
           MG G WFK  +  KKVK  SSKQ K        A A+S    +     K+S  F    A 
Sbjct: 1   MGSGRWFKAVIRLKKVKTSSSKQTKLGLVFFKLALARSSFHLYAFANLKDSPRFKSDGAN 60

Query: 51  GST--LGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYL 108
           G++  L MP+EDVAA+RIQTA+RAY+ARK  R LKG  RLQ ++Q HSV+K AT+TL YL
Sbjct: 61  GNSKSLSMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLGYL 120

Query: 109 HTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRIN 168
           H+WS +QA+IRARRLCMV EGR RQK+LENQ KL+AKL+ +E++W GG ++M+ ILSRI+
Sbjct: 121 HSWSHIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIH 180

Query: 169 QREKAAVKRERAMAYAFSHQ 188
            RE+AAVKRERAMAYAFSHQ
Sbjct: 181 DREEAAVKRERAMAYAFSHQ 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2055430	263	iqd9 "AT2G33990" [Arabidopsis	0.683	0.524	0.608	5.9e-41
TAIR|locus:2086385	259	IQD10 "AT3G15050" [Arabidopsis	0.702	0.548	0.563	1.7e-36
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.702	0.336	0.420	8.8e-23
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.668	0.324	0.430	3.9e-22
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.628	0.245	0.401	9.8e-21
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.653	0.306	0.358	2.4e-19
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.658	0.288	0.377	3.9e-19
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.643	0.194	0.380	9e-18
TAIR|locus:2030225	414	iqd8 "AT1G72670" [Arabidopsis	0.618	0.301	0.370	9.6e-17
TAIR|locus:2018837	371	IQD7 "AT1G17480" [Arabidopsis	0.574	0.312	0.346	1.1e-16

TAIR|locus:2055430 iqd9 "AT2G33990" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 84/138 (60%), Positives = 111/138 (80%)

Query:    51 GSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHT 110
             G++L    ED AA RIQTAF+AYKARK+ RRLKG  R +  +++ SV+ QA  TL YLH+
Sbjct:    38 GTSLVTRSEDWAATRIQTAFKAYKARKSLRRLKGIARAKLSTEKQSVKNQAVVTLRYLHS 97

Query:   111 WSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQR 170
             WSK+Q+EI+ARR+CMV E RL+ K+LE+Q KL+AKL+ +E++W+GG ET +EIL RI QR
Sbjct:    98 WSKIQSEIKARRVCMVTEWRLKNKRLEHQQKLEAKLHDVEVEWNGGSETKDEILERILQR 157

Query:   171 EKAAVKRERAMAYAFSHQ 188
             E+A +KRERA+AYAFSHQ
Sbjct:   158 EEATIKRERALAYAFSHQ 175

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/142 (56%), Positives = 102/142 (71%)

Query:    60 DVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR 119
             +VA IRIQ AFRA+KARK    LK   R   + Q H+V  Q +T L+ +H+W  +Q +IR
Sbjct:    50 EVAVIRIQKAFRAFKARKRLCSLKSARRFNSLIQGHTVMNQTSTALNVIHSWYDIQNQIR 109

Query:   120 ARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRER 179
             ARRL MV +GRL+ K+LEN+LKL+ KL+ LE++W GG ETMEEIL++I Q+E+A VKRER
Sbjct:   110 ARRLYMVTQGRLQHKRLENRLKLEIKLHELEVEWCGGSETMEEILAKIQQKEEATVKRER 169

Query:   180 AMAYAFSHQVCQTLTYTLCAAS 201
             AMAYAFSHQ     T  L  AS
Sbjct:   170 AMAYAFSHQWRANATQYLGQAS 191

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 61/145 (42%), Positives = 91/145 (62%)

Query:    59 EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
             E+ AA RIQTA+R + AR+  R LKG +RLQ + + H+V+KQA  TL  +    ++QA +
Sbjct:    87 ENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARV 146

Query:   119 RARR--LCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVK 176
             RARR  L +  E    Q+ L+ QL  +A++  +E  W     ++E+I +++ +R++AA K
Sbjct:   147 RARRVRLALELESETSQQTLQQQLADEARVREIEEGWCDSIGSVEQIQAKLLKRQEAAAK 206

Query:   177 RERAMAYAFSHQVCQTLTYTLCAAS 201
             RERAMAYA +HQ  Q  T  L A S
Sbjct:   207 RERAMAYALTHQ-WQAGTRLLSAHS 230

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.9e-22, P = 3.9e-22
 Identities = 59/137 (43%), Positives = 87/137 (63%)

Query:    59 EDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
             E+ AAIRIQTAFR + AR+  R LKG +RLQ + +   V+KQA  TL  +    ++QA +
Sbjct:    83 EEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARV 142

Query:   119 RARRLCMVKEGRLRQKKL-ENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKR 177
             RARR+ M  EG+  QK L E++ K D  L  +E  W     T+++I S++ QR++ A KR
Sbjct:   143 RARRVRMTVEGQAVQKLLDEHRTKSDL-LKEVEEGWCDRKGTVDDIKSKLQQRQEGAFKR 201

Query:   178 ERAMAYAFSHQVCQTLT 194
             ERA+AYA + +  ++ T
Sbjct:   202 ERALAYALAQKQWRSTT 218

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 9.8e-21, P = 9.8e-21
 Identities = 53/132 (40%), Positives = 87/132 (65%)

Query:    58 VEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAE 117
             V++  AI+IQ AFR Y AR++FR LKG +RLQGV + HSV++Q    + Y+    ++Q +
Sbjct:   167 VKNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQ 226

Query:   118 IRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKR 177
             +++RR+ M+ E R R  K + +L + ++++    DW     T EE   R++++  A +KR
Sbjct:   227 VQSRRIQML-ENRARNDKDDTKL-VSSRMSD---DWDDSVLTKEEKDVRLHRKIDAMIKR 281

Query:   178 ERAMAYAFSHQV 189
             ER+MAYA+SHQ+
Sbjct:   282 ERSMAYAYSHQL 293

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 48/134 (35%), Positives = 87/134 (64%)

Query:    55 GMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKL 114
             G  +E++AAI+IQTAFR Y AR+  R L+G +RL+ + Q   V++QAT+TL  + T +++
Sbjct:   103 GKSMEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARV 162

Query:   115 QAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAA 174
             Q +IR RRL + ++ +   ++L+ +   D   +    +W+    + E++ + +  ++ A 
Sbjct:   163 QYQIRERRLRLSEDKQALTRQLQQKHNKD--FDKTGENWNDSTLSREKVEANMLNKQVAT 220

Query:   175 VKRERAMAYAFSHQ 188
             ++RE+A+AYAFSHQ
Sbjct:   221 MRREKALAYAFSHQ 234

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 3.9e-19, P = 3.9e-19
 Identities = 51/135 (37%), Positives = 88/135 (65%)

Query:    55 GMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKL 114
             G   E+ AAI IQT FR Y AR+  R ++G +RL+ + +   V++QA  TL  + T S++
Sbjct:   110 GKSNEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRV 169

Query:   115 QAEIRARRLCMVKEGRLRQKKL-ENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKA 173
             Q++IRARR+ M +E + RQK+L +   K  A L + + +W+   ++ E++ + +  + +A
Sbjct:   170 QSQIRARRIRMSEENQARQKQLLQKHAKELAGLKNGD-NWNDSIQSKEKVEANLLSKYEA 228

Query:   174 AVKRERAMAYAFSHQ 188
              ++RERA+AY++SHQ
Sbjct:   229 TMRRERALAYSYSHQ 243

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 9.0e-18, P = 9.0e-18
 Identities = 51/134 (38%), Positives = 83/134 (61%)

Query:    56 MPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQ 115
             +PV+  +A +IQ AFR Y ARK+FR LKG +RLQGV + +SV++Q    + Y+    ++Q
Sbjct:   319 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 378

Query:   116 AEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAV 175
             ++I++RR+ M+ E + + +K E +       N    +W     T EE  SR  ++  A +
Sbjct:   379 SQIQSRRIKML-ENQAQVEKDEAKWAASEAGND---NWDDSVLTKEERDSRSQRKTDAII 434

Query:   176 KRERAMAYAFSHQV 189
             KRER+MAYA+S ++
Sbjct:   435 KRERSMAYAYSRKL 448

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2030225 iqd8 "AT1G72670" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 9.6e-17, P = 9.6e-17
 Identities = 47/127 (37%), Positives = 72/127 (56%)

Query:    62 AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121
             AA RIQ AFRA+ AR+  R LK  +R+Q + +   V+KQA  TL  +    ++QA +RA 
Sbjct:    95 AATRIQAAFRAFLARQALRALKAVVRIQAIFRGRQVRKQADVTLRCMQALVRVQARVRAH 154

Query:   122 RLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAM 181
                   +G+  +K  + Q    AK    E  W   P ++ E+ +++  R++ A+KRERAM
Sbjct:   155 CNRGPSDGQELEKPSDQQKDDPAK--QAEKGWCDSPGSINEVRTKLQMRQEGAIKRERAM 212

Query:   182 AYAFSHQ 188
              YA +HQ
Sbjct:   213 VYALTHQ 219

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2018837 IQD7 "AT1G17480" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/127 (34%), Positives = 73/127 (57%)

Query:    62 AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121
             A+ RIQ AFRA+ AR+ FR LK  +R+Q + +   V+KQA  TL  +    ++Q+ +RA 
Sbjct:    96 ASTRIQAAFRAFLARQAFRALKAVVRIQAIFRGRQVRKQAAVTLRCMQALVRVQSRVRAH 155

Query:   122 RLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRERAM 181
             R           +   + L+L   +   E  W G P +++E+ +++  +++ A+KRERAM
Sbjct:   156 R-----------RAPSDSLELKDPVKQTEKGWCGSPRSIKEVKTKLQMKQEGAIKRERAM 204

Query:   182 AYAFSHQ 188
              YA +HQ
Sbjct:   205 VYALTHQ 211

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV0437 hypothetical protein (312 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	98.11
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.65
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.59
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.69
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.31
PTZ00014	821	myosin-A; Provisional	96.23
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	94.21
COG5022	1463	Myosin heavy chain [Cytoskeleton]	93.87
KOG2128	1401	consensus Ras GTPase-activating protein family - I	92.82
smart00015	26	IQ Short calmodulin-binding motif containing conse	90.75
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	89.36
KOG0520	975	consensus Uncharacterized conserved protein, conta	87.95
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	83.87
PTZ00014	821	myosin-A; Provisional	83.8

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=98.11  E-value=3.6e-06  Score=47.58  Aligned_cols=21  Identities=48%  Similarity=0.680  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q 028900           60 DVAAIRIQTAFRAYKARKTFR   80 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~   80 (202)
                      ..|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999884

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.65  E-value=5e-05  Score=44.77  Aligned_cols=22  Identities=50%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHH
Q 028900           59 EDVAAIRIQTAFRAYKARKTFR   80 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~   80 (202)
                      .+.||+.||+.||||++|+.|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5689999999999999999984

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.59  E-value=0.0002  Score=72.71  Aligned_cols=63  Identities=27%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      ....+++.||..||||+.|+.|..++ +++.+|+.+||.++|+..   . ...+++.+|..+|+...|
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r  734 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNR  734 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHH
Confidence            34567888999999999999999665 788899999999999821   1 344555555555554443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.69  E-value=0.0017  Score=66.74  Aligned_cols=71  Identities=25%  Similarity=0.367  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhh
Q 028900           59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTL-------SYLHTWSKLQAEIRARRLCMVKEG  129 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tl-------r~~~a~vkIQs~iRarr~Rm~~e~  129 (202)
                      ...||..||.-||||+.|+.+..++ -+|++|+.+||+.+|++|....       +.+.+|-++|+.+|++..+-..|.
T Consensus       809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~  887 (975)
T KOG0520|consen  809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE  887 (975)
T ss_pred             chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence            3468999999999999999999665 7999999999999999997322       236788889999999988766443

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.31  E-value=0.012  Score=60.04  Aligned_cols=65  Identities=20%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           58 VEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        58 ree~AAi~IQsafRGylARr~l~~lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      ..-.+++.||+.+||+++|+....-...+.+|..+|++..|+++   .....+++.+|+.+|+..+|.
T Consensus       694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence            45578999999999999998333445788899999999999998   444578999999999999987

>PTZ00014 myosin-A; Provisional

Probab=96.23  E-value=0.0064  Score=61.82  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHH-HHhHHHhhhhhhhhHHHHHH
Q 028900           61 VAAIRIQTAFRAYKARKTFRR-LKGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        61 ~AAi~IQsafRGylARr~l~~-lkgiVrLQalvRG~~vRrq~  101 (202)
                      ..++.||+++|||++|+.|.. ..+++.+|+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            368899999999999999995 55899999999999998753

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=94.21  E-value=0.047  Score=30.53  Aligned_cols=19  Identities=21%  Similarity=0.137  Sum_probs=15.8

Q ss_pred             HhHHHhhhhhhhhHHHHHH
Q 028900           83 KGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        83 kgiVrLQalvRG~~vRrq~  101 (202)
                      +++|.||+.+||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4678889999999998876

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=93.87  E-value=0.13  Score=55.03  Aligned_cols=65  Identities=23%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~-~lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      -...++.||+++||++.|+.|. .++.+..+|.+.+|..+++.+..-+. .....++|..++...-|
T Consensus       744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~r  809 (1463)
T COG5022         744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLGSR  809 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHhhH
Confidence            3468999999999999999998 78888888999999988876643332 35666777776655443

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=92.82  E-value=0.31  Score=52.19  Aligned_cols=67  Identities=18%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhhhHHH---HHH-HH-HHHhHHHhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q 028900           59 EDVAAIRIQTAFRAYKA---RKT-FR-RLKGTIRLQGVSQRHSVQKQATTTL----SYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        59 ee~AAi~IQsafRGylA---Rr~-l~-~lkgiVrLQalvRG~~vRrq~~~tl----r~~~a~vkIQs~iRarr~Rm  125 (202)
                      .....+.||++.|||+.   +.. +. ..+.+|.+|++.||+++|+.+...+    .++.+.+.||+.+|.+..|-
T Consensus       564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~  639 (1401)
T KOG2128|consen  564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK  639 (1401)
T ss_pred             cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence            45678999999999993   222 22 5668999999999999999997443    47999999999999998764

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=90.75  E-value=0.22  Score=29.00  Aligned_cols=19  Identities=16%  Similarity=0.151  Sum_probs=16.4

Q ss_pred             HhHHHhhhhhhhhHHHHHH
Q 028900           83 KGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        83 kgiVrLQalvRG~~vRrq~  101 (202)
                      +.++.||+.+||+.+|+.+
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4688899999999999887

Calmodulin-binding motif.

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=89.36  E-value=1  Score=46.09  Aligned_cols=25  Identities=32%  Similarity=0.598  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhH
Q 028900           61 VAAIRIQTAFRAYKARKTFRRLKGT   85 (202)
Q Consensus        61 ~AAi~IQsafRGylARr~l~~lkgi   85 (202)
                      .-|+.||.++||+++|..|+.++.+
T Consensus       697 ~lvtllQK~~RG~~~R~ry~rmka~  721 (1001)
T KOG0164|consen  697 SLVTLLQKAWRGWLARQRYRRMKAS  721 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999988753

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=87.95  E-value=1.5  Score=45.72  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHH-HhHH----------HhhhhhhhhHHHHHHH----------------------HHHHHH
Q 028900           62 AAIRIQTAFRAYKARKTFRRL-KGTI----------RLQGVSQRHSVQKQAT----------------------TTLSYL  108 (202)
Q Consensus        62 AAi~IQsafRGylARr~l~~l-kgiV----------rLQalvRG~~vRrq~~----------------------~tlr~~  108 (202)
                      =+++||+++|||-.|+.|..+ .++-          ++|...||+..|..+.                      ...+--
T Consensus       835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~  914 (975)
T KOG0520|consen  835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT  914 (975)
T ss_pred             ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999833 2311          4477888876665432                      222336


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028900          109 HTWSKLQAEIRARRLC  124 (202)
Q Consensus       109 ~a~vkIQs~iRarr~R  124 (202)
                      +|+++||+.+|....+
T Consensus       915 ~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  915 RAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHhcCHHHH
Confidence            7999999999888766

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.87  E-value=1.2  Score=45.91  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             chhHHHHHHHHHHhhhHHHHHHHH
Q 028900           57 PVEDVAAIRIQTAFRAYKARKTFR   80 (202)
Q Consensus        57 ~ree~AAi~IQsafRGylARr~l~   80 (202)
                      .+.|.||+.||..+|||++|+.++
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~   50 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQ   50 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999987

>PTZ00014 myosin-A; Provisional

Probab=83.80  E-value=2.9  Score=42.96  Aligned_cols=38  Identities=11%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      .++.+|+.+||+..|+.+.   +..++++.||+.+|++..+
T Consensus       779 ~~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~  816 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVI  816 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4668899999999999983   3467999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-04
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	7e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 62  AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIR-- 119
           AAI IQ   R Y  RK ++ ++          R  + +     +   H    +Q  +R  
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877

Query: 120 ------------ARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPET-MEEILSR 166
                          L       + +++L+  LK++A+          G E  + ++  +
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKK-LKIEARSVERYKKLHIGLENKIMQLQRK 936

Query: 167 INQREKAAVKRERAMA 182
           I+++ K        M 
Sbjct: 937 IDEQNKEYKSLLEKMN 952

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 10/124 (8%)

Query: 61  VAAIRIQTAFRAYKARKTFRRL---KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAE 117
            +   +Q+   A+K  K   +    +    L+ +      + +      ++        E
Sbjct: 796 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNE 855

Query: 118 IRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKR 177
           I +    + K  +   + L  +LK   K+  L        +    IL ++          
Sbjct: 856 IDSTWSALEKAEQEHAEALRIELKRQKKIAVLL-------QKYNRILKKLENWATTKSVY 908

Query: 178 ERAM 181
             + 
Sbjct: 909 LGSN 912

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 4/125 (3%)

Query: 62  AAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRH-SVQKQATTTLSY--LHTWSKLQAEI 118
              +     RA +  +     + ++  +       SVQ        Y       K Q   
Sbjct: 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVS 824

Query: 119 RARRLCMVKEGRLRQKKLENQL-KLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKR 177
               +    + +LR  K E  +       N ++  WS   +  +E    +    K   K 
Sbjct: 825 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 884

Query: 178 ERAMA 182
              + 
Sbjct: 885 AVLLQ 889

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 11/35 (31%)

Query: 132 RQ--KKLENQLKLDAKLNS---LEIDWSGGPETME 161
           +Q  KKL+  LKL A  +S   L I       TME
Sbjct: 19  KQALKKLQASLKLYAD-DSAPALAIK-----ATME 47

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 62  AAIRIQTAFRAYKA---RKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118
           +   +Q+   A+K     +   + +    L+ +      + +      ++        EI
Sbjct: 789 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 848

Query: 119 RARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEEILSRINQREKAAVKRE 178
            +    + K  +   + L  +LK   K+  L        +    IL ++           
Sbjct: 849 DSTWSALEKAEQEHAEALRIELKRQKKIAVLL-------QKYNRILKKLENWATTKSVYL 901

Query: 179 RAM 181
            + 
Sbjct: 902 GSN 904

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Length = 168

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 36  KWKKPLGKESSIFAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRH 95
           K+      + S   I +TL    E+V+A+ IQ AFR +  +++ +      R Q      
Sbjct: 106 KFMAANPSKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSLKHASFLFRQQ---AGS 162

Query: 96  SVQKQ 100
            + ++
Sbjct: 163 GLSEE 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.12
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.85
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.68
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.67
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	98.13
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	98.0
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.93
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.29
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	97.24
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.2
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.8
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.8
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.79
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.54
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.71
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	93.59
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	93.06
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	91.06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	89.68
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	86.6

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.12  E-value=1.4e-10  Score=79.03  Aligned_cols=53  Identities=23%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 028900           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTW  111 (202)
Q Consensus        58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~  111 (202)
                      ..+.||+.||+.||||++|+.|..++ +++.||+.+||+.+|+.+. .++...++
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence            46789999999999999999999776 8999999999999999994 44444443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.85  E-value=4.6e-09  Score=68.73  Aligned_cols=41  Identities=17%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHH---hHHHhhhhhhhhHHHHHH
Q 028900           61 VAAIRIQTAFRAYKARKTFRRLK---GTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        61 ~AAi~IQsafRGylARr~l~~lk---giVrLQalvRG~~vRrq~  101 (202)
                      .||+.||+.+|||++|+.+..++   +++.||+.+||+.+|+.+
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            58999999999999999998554   788999999999999875

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.68  E-value=4.2e-08  Score=99.35  Aligned_cols=65  Identities=26%  Similarity=0.277  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      ..||+.||++||||++|+.|..++ +++.||+.+||+.+|+.+ ..++...|++.||+.+|++.+|.
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk  833 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRK  833 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHH
Confidence            579999999999999999999665 889999999999999988 44566788888888888887764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.67  E-value=3.1e-08  Score=100.31  Aligned_cols=67  Identities=25%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      +++.||+.||+.||||++|+.|..++ +++.||+.+||+.+|+.+. .++...+++.||+.+|+...|.
T Consensus       814 r~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~  881 (1080)
T 2dfs_A          814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARV  881 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHH
T ss_pred             ccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888888888888555 7888899999999988874 3444456777777777666654

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=98.13  E-value=1.4e-06  Score=53.62  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             cchhHHHHHHHHHHhhhHHHHHHHH
Q 028900           56 MPVEDVAAIRIQTAFRAYKARKTFR   80 (202)
Q Consensus        56 ~~ree~AAi~IQsafRGylARr~l~   80 (202)
                      ...||.||+.||.|||+||.|+.+.
T Consensus         2 rk~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            2 PGSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3579999999999999999998754

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=98.00  E-value=2.7e-06  Score=50.77  Aligned_cols=22  Identities=41%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             chhHHHHHHHHHHhhhHHHHHH
Q 028900           57 PVEDVAAIRIQTAFRAYKARKT   78 (202)
Q Consensus        57 ~ree~AAi~IQsafRGylARr~   78 (202)
                      ..||.||+.||.|||+||.|+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999865

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.93  E-value=2.2e-05  Score=50.96  Aligned_cols=42  Identities=14%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             HhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        83 kgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      .+++.||+.+||+++|+.+ ..++...+++.||+.+|+..+|.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence            4789999999999999999 44566679999999999998873

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.29  E-value=0.00049  Score=47.32  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH---H-hHHHhhhhhhhhHHHHH
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQKQ  100 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~l---k-giVrLQalvRG~~vRrq  100 (202)
                      ...++.||+.+|||++|+.|..+   + ++..+|.-+|++..++.
T Consensus         6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            34567777777777777776633   2 34455666666555544

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=97.24  E-value=0.00057  Score=45.87  Aligned_cols=41  Identities=15%  Similarity=0.087  Sum_probs=35.2

Q ss_pred             HhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028900           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV  126 (202)
Q Consensus        83 kgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm~  126 (202)
                      .++|.||+.+||+.+|+.+..   ...+++.||+.+||+.+|..
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~   46 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCY   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999943   33699999999999998853

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.20  E-value=0.00045  Score=47.42  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=20.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHH---H-hHHHhhhhhhhhHHHH
Q 028900           61 VAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQK   99 (202)
Q Consensus        61 ~AAi~IQsafRGylARr~l~~l---k-giVrLQalvRG~~vRr   99 (202)
                      ..++.||+.+|||++|+.|..+   + ++..+|.-+|+++.++
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456666666666666666532   1 3334455555544444

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.80  E-value=0.0026  Score=43.60  Aligned_cols=42  Identities=14%  Similarity=-0.047  Sum_probs=37.5

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      .++.+|+.+||+++|+.+...+....|+..||..+|++..+.
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            578899999999999999888888889999999999988754

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.80  E-value=0.0024  Score=43.71  Aligned_cols=42  Identities=14%  Similarity=-0.045  Sum_probs=37.5

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM  125 (202)
Q Consensus        84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm  125 (202)
                      .++.+|+.+||+++|+.+...+....|+..||..+|++..+.
T Consensus         6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            477899999999999999888888889999999999988764

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.79  E-value=0.0012  Score=65.59  Aligned_cols=42  Identities=21%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH----HhHHHhhhhhhhhHHHHHH
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~l----kgiVrLQalvRG~~vRrq~  101 (202)
                      ..+|+.||+++|||++|+.|..+    .+++.||..+||+++|+..
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            34789999999999999999855    3678888888888888775

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.54  E-value=0.0026  Score=51.51  Aligned_cols=34  Identities=18%  Similarity=0.488  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHhhhhh
Q 028900           59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVS   92 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~-~lkgiVrLQalv   92 (202)
                      ...|+|.||+..||||+|+.++ .+.|++++.++.
T Consensus        44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4678999999999999999999 778888776654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.71  E-value=0.0093  Score=60.66  Aligned_cols=41  Identities=22%  Similarity=0.188  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHH----HhHHHhhhhhhhhHHHHHH
Q 028900           61 VAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        61 ~AAi~IQsafRGylARr~l~~l----kgiVrLQalvRG~~vRrq~  101 (202)
                      .+|+.||+.+|||++|+.|..+    .+++.+|..+||++.++.+
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999855    3788999999999998763

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=93.59  E-value=0.049  Score=44.71  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             cchhHHHHHHHHHHhhhHHHHHHHHH
Q 028900           56 MPVEDVAAIRIQTAFRAYKARKTFRR   81 (202)
Q Consensus        56 ~~ree~AAi~IQsafRGylARr~l~~   81 (202)
                      ...++.||+.||.|||.|+.|+.+..
T Consensus       126 ~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          126 RKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            35789999999999999999988763

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=93.06  E-value=0.21  Score=49.68  Aligned_cols=41  Identities=15%  Similarity=-0.035  Sum_probs=36.3

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      .++.+|+.+||+++|+.+...+....|++.||..+|++..|
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~  821 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL  821 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999976666678999999999998876

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=91.06  E-value=0.13  Score=50.89  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHh
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRLKG   84 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~lkg   84 (202)
                      ..+|+.||+++|||++|+.|..++.
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~  792 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMRR  792 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999997763

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=89.68  E-value=0.68  Score=47.11  Aligned_cols=41  Identities=15%  Similarity=0.026  Sum_probs=36.2

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      .++.||+.+||+++|+.+...+....+++.||+.+|++..+
T Consensus       794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~  834 (1184)
T 1i84_S          794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV  834 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999977666778999999999998765

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=86.60  E-value=1  Score=45.83  Aligned_cols=42  Identities=7%  Similarity=0.176  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHH
Q 028900           59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~  101 (202)
                      -+.+|+.||. +|||++|+.|+.++ +++.+|.+.|+...|+..
T Consensus       774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3467787875 79999999999665 777888877776665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.23
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.13
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	94.45
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.72
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.26

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.23  E-value=0.00011  Score=69.94  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH----hHHHhhhhhhhhHHHHHH
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRLK----GTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~lk----giVrLQalvRG~~vRrq~  101 (202)
                      ..+|+.||+.||||++|+.|+.+|    +++.+|..+||+.+||.+
T Consensus       731 ~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            568999999999999999999765    577889999999999876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.13  E-value=0.00022  Score=67.74  Aligned_cols=42  Identities=14%  Similarity=0.111  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH----HhHHHhhhhhhhhHHHHHH
Q 028900           60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA  101 (202)
Q Consensus        60 e~AAi~IQsafRGylARr~l~~l----kgiVrLQalvRG~~vRrq~  101 (202)
                      ..+|+.||+.+|||++|+.|+.+    .+++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999744    3788899999999998876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.45  E-value=0.039  Score=51.90  Aligned_cols=43  Identities=7%  Similarity=-0.072  Sum_probs=37.6

Q ss_pred             HHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           82 LKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        82 lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      .+.++.||+.+||+.+|+.+...+....|++.||+.+|++..|
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~  777 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV  777 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999987666678999999999999876

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.72  E-value=0.033  Score=51.77  Aligned_cols=25  Identities=36%  Similarity=0.602  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHH
Q 028900           59 EDVAAIRIQTAFRAYKARKTFRRLK   83 (202)
Q Consensus        59 ee~AAi~IQsafRGylARr~l~~lk   83 (202)
                      ...+|+.||+.+|||++|+.|..+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999998664

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.26  E-value=0.14  Score=47.92  Aligned_cols=42  Identities=17%  Similarity=-0.008  Sum_probs=34.8

Q ss_pred             HhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900           83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC  124 (202)
Q Consensus        83 kgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R  124 (202)
                      +.++.||+.+||+.+|+.+........+++.||+.+|++..|
T Consensus       732 ~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~r  773 (789)
T d1kk8a2         732 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL  773 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788999999999999965444456889999999998776