Citrus Sinensis ID: 028906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccccHHHHHccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHcEEEEEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHccHHHHHHHccccccEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccEcccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKrykaldidKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKlnnatlfeeagesnllldhkhitlefasfpdgKEAVAKAANLLFMKYVKlggsgkiqeekIFTEAHMSEALRAVAKARNLTCY
Flexible Loop (DISEMBL)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Low Complexity Region (SEG)
MDFRDTMQKVYSWACQignlglwiiwlliHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Disordered region (IsUnstruct)
*******QKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEA******************
Disordered Region (DISOPRED)
********KVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKES****************SNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYV************IFTEAHMSEALRAVAKARNLTCY
Disordered Region (DISEMBL)
********KVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Disordered Region (DISPRO)
*DFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARNLTCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224077818	254	predicted protein [Populus trichocarpa]	0.960	0.763	0.649	1e-65
359475282	255	PREDICTED: nogo-B receptor-like isoform	0.960	0.760	0.639	2e-63
255556087	243	conserved hypothetical protein [Ricinus	0.891	0.740	0.613	7e-56
147800089	199	hypothetical protein VITISV_032483 [Viti	0.915	0.929	0.596	3e-52
363814545	254	uncharacterized protein LOC100796301 [Gl	0.940	0.748	0.517	1e-44
297849548	414	predicted protein [Arabidopsis lyrata su	0.960	0.468	0.466	9e-41
357481047	287	Nogo-B receptor [Medicago truncatula] gi	0.900	0.634	0.486	7e-40
4835781	417	F25C20.9 [Arabidopsis thaliana]	0.960	0.465	0.456	8e-40
449460714	262	PREDICTED: nogo-B receptor-like [Cucumis	0.871	0.671	0.516	8e-40
145323858	254	cis-prenyltransferase, dehydrodolichyl d	0.960	0.763	0.456	2e-39

>gi|224077818|ref|XP_002305421.1| predicted protein [Populus trichocarpa] gi|222848385|gb|EEE85932.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 151/194 (77%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDF+D +Q+V     QIGN GL ++W  +H  V  WY  + +A  IESYLISSG+LKRY+
Sbjct: 1   MDFKDEVQRVKFGINQIGNFGLRLVWHSVHLLVRFWYLGVGVANVIESYLISSGLLKRYR 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D+ KLRYLAIVIES++A  I  VIQLLQWL  IGVKH+CLYD EG+LKKSKESIL KL
Sbjct: 61  SIDVGKLRYLAIVIESDDACRISKVIQLLQWLQAIGVKHLCLYDTEGVLKKSKESILAKL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
            NATLFEEA E + LLD KH+TLEFAS  DGKEAVAK  N+LFMKY K+  SG  Q+E+I
Sbjct: 121 KNATLFEEADERDSLLDQKHMTLEFASISDGKEAVAKGGNVLFMKYSKVANSGAEQKEQI 180

Query: 181 FTEAHMSEALRAVA 194
           FTEA+M+EALRAV 
Sbjct: 181 FTEANMTEALRAVG 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475282|ref|XP_003631634.1| PREDICTED: nogo-B receptor-like isoform 1 [Vitis vinifera] gi|359475284|ref|XP_003631635.1| PREDICTED: nogo-B receptor-like isoform 2 [Vitis vinifera] gi|297741434|emb|CBI32565.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 147/194 (75%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDF D +QKVY W   IG+LGL ++W  +HF V +W+ A   A  +ES  ISSG+LKRY+
Sbjct: 1   MDFGDEVQKVYCWISHIGSLGLKVLWHFLHFIVSVWFLARQAAYVLESCFISSGLLKRYE 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           AL++  LRYLAIVIESEEA+ IP VI+LL WL  IGVKHVCLYD EG+LKKSKE+IL KL
Sbjct: 61  ALNLGNLRYLAIVIESEEAHQIPKVIELLNWLATIGVKHVCLYDNEGVLKKSKEAILEKL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
            +ATLFE   E+NLLLD +HITLEFAS  DGK AV KAAN+LFMKY+K   SG    E I
Sbjct: 121 TDATLFEGVDENNLLLDQEHITLEFASISDGKGAVTKAANILFMKYLKSADSGGSSAESI 180

Query: 181 FTEAHMSEALRAVA 194
           FTE HM+EAL+AV 
Sbjct: 181 FTEPHMAEALKAVG 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556087|ref|XP_002519078.1| conserved hypothetical protein [Ricinus communis] gi|223541741|gb|EEF43289.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 136/181 (75%), Gaps = 1/181 (0%)

Query: 14  ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
           + QIG+LGL ++W  +H  V LWY    IA   ESYLIS+G+L RYK LD+ KLRYLAIV
Sbjct: 5   SVQIGDLGLRLLWHFVHLLVSLWYLGAGIAQVTESYLISNGLLNRYKTLDVGKLRYLAIV 64

Query: 74  IESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESN 133
           +ESE+AY I  V+QLLQWL  IGVKH+CLYD+EG+LKKSK+ I+ +L NA   EEA E +
Sbjct: 65  VESEDAYQISEVLQLLQWLEAIGVKHLCLYDSEGVLKKSKKFIIERLPNAIQLEEAVEKD 124

Query: 134 LLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193
           L LDHKH+TLEFAS  DGKEA+AKAANLLFM Y+K      I +E++ TEAHM EALR +
Sbjct: 125 LPLDHKHMTLEFASVSDGKEAIAKAANLLFMNYMK-SAKTNIGQEEVITEAHMDEALRTL 183

Query: 194 A 194
            
Sbjct: 184 G 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800089|emb|CAN70934.1| hypothetical protein VITISV_032483 [Vitis vinifera]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 136/186 (73%), Gaps = 1/186 (0%)

Query: 10  VYSWACQIGNLGLWIIWLLIHFAVD-LWYFALHIACAIESYLISSGILKRYKALDIDKLR 68
           +YSW  +  +   ++I   +   +D +W+ A   A  +ES  ISSG+LKRY+AL++  LR
Sbjct: 12  LYSWDSEKPHELKFLIAXSLRDKLDNVWFLARQAAYVLESCFISSGLLKRYEALNLGNLR 71

Query: 69  YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEE 128
           YLAIVIESEEA+ IP VI+LL WL  IGVKHVCLYD EG+LKKSKE+IL KL +ATLFE 
Sbjct: 72  YLAIVIESEEAHQIPKVIELLNWLATIGVKHVCLYDNEGVLKKSKEAILEKLTDATLFEG 131

Query: 129 AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSE 188
             E+NLLLD +HITLEFAS  DGK AV KAAN+LFMKY+K   SG    E IFTE HM+E
Sbjct: 132 VDENNLLLDQEHITLEFASISDGKGAVTKAANILFMKYLKSADSGGSSAESIFTEPHMAE 191

Query: 189 ALRAVA 194
           AL+AV 
Sbjct: 192 ALKAVG 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814545|ref|NP_001242452.1| uncharacterized protein LOC100796301 [Glycine max] gi|255645054|gb|ACU23026.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 129/197 (65%), Gaps = 7/197 (3%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDFRD   K       IGNLGL ++W  +   +  WYF   +    ESY IS G+LK+YK
Sbjct: 1   MDFRDLAHKFSRCIVTIGNLGLQLLWYFLRIILSAWYFISVVGNLFESYFISCGVLKKYK 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           +L   K+RYLAIVIESEEAY I  V++LLQWL  IGVK+VCLYD  G+LKKSKE+I  +L
Sbjct: 61  SLHSGKVRYLAIVIESEEAYQISRVVKLLQWLDIIGVKNVCLYDMNGVLKKSKETIFKEL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVK---LGGSGKIQE 177
            NA   EE  E   L D  H+TLEF S+ DGKEAVAKAANL+F++++K   LGG    + 
Sbjct: 121 KNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHELGG----EL 176

Query: 178 EKIFTEAHMSEALRAVA 194
           + I  E  ++EAL+ V 
Sbjct: 177 DLILLEPQLNEALQIVG 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849548|ref|XP_002892655.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338497|gb|EFH68914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MD   +M+ + SW  QIG+LGL ++W  IH  V LWY    I+ AIESY IS G+ K+Y 
Sbjct: 143 MDSNQSMRLLSSWIGQIGDLGLNLLWRFIHIVVSLWYIVSGISEAIESYAISLGLNKKYS 202

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D++KLR LA+V++ E    +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct: 203 SIDLEKLRCLAVVVDIEAVQDVAKVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 262

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             + L EE G+ +   D K I LEF S  D KEAV KAAN+L  +Y+K       Q E  
Sbjct: 263 PGSMLLEEIGK-DFSPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPENDQGENF 321

Query: 181 FTEAHMSEALRAVAK 195
           FTE+H++EAL  V +
Sbjct: 322 FTESHLNEALGVVGE 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481047|ref|XP_003610809.1| Nogo-B receptor [Medicago truncatula] gi|355512144|gb|AES93767.1| Nogo-B receptor [Medicago truncatula]

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 119/189 (62%), Gaps = 7/189 (3%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDFRD    +Y     I NLGL ++W  +   V  WY+   +A   ESY IS G+ K+YK
Sbjct: 1   MDFRDVAHNLYHSILAIRNLGLQLLWYFLQIIVSAWYYISVVANLFESYFISYGVFKKYK 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           +L I KLRYLAIVIESE+A+    V+QLLQWL  +G+K+VCLYD  G+LKKSKE+I   +
Sbjct: 61  SLPIAKLRYLAIVIESEDAHQTSKVVQLLQWLDSLGIKNVCLYDMNGVLKKSKEAIFHTM 120

Query: 121 NNATLFEEAGESNLLLDH--KHITLEFASFPDGKEAVAKAANLLFMKYVK---LGGSGKI 175
            NA   EE  ++  + DH   H+TLEF S+ DGKEAV KAANL+F++  K   L G    
Sbjct: 121 KNAKSIEEVNKA--VTDHVPDHMTLEFVSYVDGKEAVTKAANLIFVESSKRHNLDGELDY 178

Query: 176 QEEKIFTEA 184
           Q E    +A
Sbjct: 179 QLEPRLNQA 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4835781|gb|AAD30247.1|AC007296_8 F25C20.9 [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 127/195 (65%), Gaps = 1/195 (0%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MD   +M+ + +W  QIG+LGL ++W  IH  V LWY    I  AIESY I+ G+ K+Y 
Sbjct: 164 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 223

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct: 224 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 283

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct: 284 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 342

Query: 181 FTEAHMSEALRAVAK 195
           FTE+H+++ALR V +
Sbjct: 343 FTESHLNDALRVVGE 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460714|ref|XP_004148090.1| PREDICTED: nogo-B receptor-like [Cucumis sativus] gi|449483980|ref|XP_004156749.1| PREDICTED: nogo-B receptor-like [Cucumis sativus]

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 128/180 (71%), Gaps = 4/180 (2%)

Query: 16  QIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIE 75
           +IG LGL +IW  +HF V  +YF + IA  +ESYLIS G   +YK L+ID+++YLAIV+E
Sbjct: 25  KIGLLGLQLIWHFLHFIVSAFYFVVGIATTLESYLISWGFPCKYKHLNIDRVQYLAIVVE 84

Query: 76  SEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLL 135
           S+EAY+   +I+LL+WLV +G++ VCLYDAEG+LK+SKE IL K+ NA+ F+   E  L 
Sbjct: 85  SDEAYNTLKMIELLEWLVSLGIRSVCLYDAEGVLKQSKEIILKKVKNASEFQGIDEP-LQ 143

Query: 136 LDHKHITLEFASFPDGKEAVAKAANLLFM-KYVKLGGSGKIQEEKIFTEAHMSEALRAVA 194
           L+ K ITLEF S  DGKEA+A+AAN L   K+ K   SG    ++  +E+ M+EAL+AV 
Sbjct: 144 LNKKGITLEFISASDGKEAIARAANFLLQNKWRKTNMSG--DHKRCLSESQMTEALKAVG 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145323858|ref|NP_001077518.1| cis-prenyltransferase, dehydrodolichyl diphosphate synthase [Arabidopsis thaliana] gi|25083010|gb|AAN72032.1| Unknown protein [Arabidopsis thaliana] gi|332190659|gb|AEE28780.1| cis-prenyltransferase, dehydrodolichyl diphosphate synthase [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 127/195 (65%), Gaps = 1/195 (0%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MD   +M+ + +W  QIG+LGL ++W  IH  V LWY    I  AIESY I+ G+ K+Y 
Sbjct: 1   MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct: 61  SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct: 121 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 179

Query: 181 FTEAHMSEALRAVAK 195
           FTE+H+++ALR V +
Sbjct: 180 FTESHLNDALRVVGE 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:4010713435	254	LEW1 "LEAF WILTING 1" [Arabido	0.960	0.763	0.420	8.3e-35

TAIR|locus:4010713435 LEW1 "LEAF WILTING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 82/195 (42%), Positives = 117/195 (60%)

Query:     1 MDFRDTMQKVYSWACQXXXXXXXXXXXXXHFAVDLWYFALHIACAIESYLISSGILKRYK 60
             MD   +M+ + +W  Q             H  V LWY    I  AIESY I+ G+ K+Y 
Sbjct:     1 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 60

Query:    61 ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
             ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct:    61 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 120

Query:   121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
               + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct:   121 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 179

Query:   181 FTEAHMSEALRAVAK 195
             FTE+H+++ALR V +
Sbjct:   180 FTESHLNDALRVVGE 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       189   0.00089  110 3  11 22  0.40    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.59u 0.11s 16.70t   Elapsed:  00:00:01
  Total cpu time:  16.59u 0.11s 16.70t   Elapsed:  00:00:01
  Start:  Thu May  9 21:23:27 2013   End:  Thu May  9 21:23:28 2013

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009645 "response to low light intensity stimulus" evidence=IMP

GO:0019408 "dolichol biosynthetic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG2818	263	consensus Predicted undecaprenyl diphosphate synth	99.25
PRK14829	243	undecaprenyl pyrophosphate synthase; Provisional	98.67
PRK14831	249	undecaprenyl pyrophosphate synthase; Provisional	98.62
PRK14830	251	undecaprenyl pyrophosphate synthase; Provisional	98.49
PRK14827	296	undecaprenyl pyrophosphate synthase; Provisional	98.43
PRK14836	253	undecaprenyl pyrophosphate synthase; Provisional	98.42
PRK14828	256	undecaprenyl pyrophosphate synthase; Provisional	98.42
cd00475	221	CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (	98.29
PRK14834	249	undecaprenyl pyrophosphate synthase; Provisional	98.27
PRK14840	250	undecaprenyl pyrophosphate synthase; Provisional	98.16
PRK14842	241	undecaprenyl pyrophosphate synthase; Provisional	97.92
PF01255	223	Prenyltransf: Putative undecaprenyl diphosphate sy	97.85
PRK14832	253	undecaprenyl pyrophosphate synthase; Provisional	97.73
PRK10240	229	undecaprenyl pyrophosphate synthase; Provisional	97.65
PRK14835	275	undecaprenyl pyrophosphate synthase; Provisional	97.64
PRK14841	233	undecaprenyl pyrophosphate synthase; Provisional	97.61
PRK14838	242	undecaprenyl pyrophosphate synthase; Provisional	97.54
COG0020	245	UppS Undecaprenyl pyrophosphate synthase [Lipid me	97.53
PRK14833	233	undecaprenyl pyrophosphate synthase; Provisional	97.42
TIGR00055	226	uppS undecaprenyl diphosphate synthase. Alternate	97.39
PRK14837	230	undecaprenyl pyrophosphate synthase; Provisional	97.26
PRK14839	239	undecaprenyl pyrophosphate synthase; Provisional	96.93
PTZ00349	322	dehydrodolichyl diphosphate synthetase; Provisiona	96.07
KOG1602	271	consensus Cis-prenyltransferase [Lipid transport a	92.5

>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]

Probab=99.25  E-value=1.8e-10  Score=102.59  Aligned_cols=126  Identities=19%  Similarity=0.251  Sum_probs=103.2

Q ss_pred             ccCcceEEEEEecccc--cChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcc--cCC-----------cccc
Q 028906           64 IDKLRYLAIVIESEEA--YHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN--NAT-----------LFEE  128 (202)
Q Consensus        64 ~~kl~~LaiVvdseea--~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~--n~~-----------~~~~  128 (202)
                      .++|+||++||..-+.  -++++.++++.|+.++||||++|||..|.+|++-.....++.  +++           .++.
T Consensus        62 ~k~p~hl~lvI~~v~~~~~~~~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~  141 (263)
T KOG2818|consen   62 KKGPKHLALVIHPVEDGEGSFSDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKL  141 (263)
T ss_pred             hhcchhheEEEEecccCCceehhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCC
Confidence            7888999999888555  589999999999999999999999999999999999999985  443           3444


Q ss_pred             cccccccccCCceEEEeecCCCCH---HHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhcc
Q 028906          129 AGESNLLLDHKHITLEFASFPDGK---EAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAK  195 (202)
Q Consensus       129 aN~k~~~~~~~~MtlE~LS~sDGK---EaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG~  195 (202)
                      +|+.+.+.+.+++.+-.+|.+||+   -++.++++.+|..+.++-...      -.|=..|+.-|+.-++
T Consensus       142 snD~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~~~------~itve~vds~l~e~~~  205 (263)
T KOG2818|consen  142 SNDEPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRSET------DITVETVDSELKEFVE  205 (263)
T ss_pred             CCCCcccccccchhheecccccccHHHHHHHHHHHHHHHHHHHhCCCc------cccHHHHHHHHHhcCC
Confidence            888888899999999999999999   555678888888777333322      2677888888887443

>PRK14829 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.67  E-value=7.4e-08  Score=84.54  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=87.8

Q ss_pred             CcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEecc-cchhhhchh------HHHhhc----
Q 028906           66 KLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKE------SILGKL----  120 (202)
Q Consensus        66 kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e------~l~~~~----  120 (202)
                      -|+|+||+-|.-  =|            .=..++.+++.||...||+||++|+- .+.+|++.+      .++.+.    
T Consensus        14 ~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~   93 (243)
T PRK14829         14 LPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRR   93 (243)
T ss_pred             CCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHH
Confidence            378999999971  11            13568899999999999999999995 889999987      444322    


Q ss_pred             ----ccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          121 ----NNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       121 ----~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                          .+.          ..+|.      ..-...+..+..|+|+++.+-+|++.|+.|++.++++..++.-+.+     .
T Consensus        94 ~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~~~~-----~  168 (243)
T PRK14829         94 REQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGD-----R  168 (243)
T ss_pred             HHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----h
Confidence                111          12221      1111235667889999999999999999999999987654433222     3


Q ss_pred             cchHhHHHHHHH
Q 028906          181 FTEAHMSEALRA  192 (202)
Q Consensus       181 fTEadm~eALka  192 (202)
                      +||..++..|-.
T Consensus       169 i~e~~i~~~L~~  180 (243)
T PRK14829        169 VTEKMISDHLYN  180 (243)
T ss_pred             CCHHHHHHHhcc
Confidence            788888888764

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.62  E-value=1.9e-07  Score=82.32  Aligned_cols=121  Identities=14%  Similarity=0.188  Sum_probs=87.3

Q ss_pred             cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEeccc-chhhhchhHH------Hh-------
Q 028906           67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI------LG-------  118 (202)
Q Consensus        67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~~-GvLKks~e~l------~~-------  118 (202)
                      |+|+||+-|.  +=|            .-..++.+++.||...||++|+||.-. ..+|++.+.+      +.       
T Consensus        21 P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~  100 (249)
T PRK14831         21 PKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRREL  100 (249)
T ss_pred             CCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence            7899999997  111            235789999999999999999999965 8889887432      21       


Q ss_pred             -hcc-cC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906          119 -KLN-NA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (202)
Q Consensus       119 -~~~-n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f  181 (202)
                       .+. +.         ..+|.      ......+-.+.+++|+++.+-+|++.|+.|++.++++..++.-+.++     +
T Consensus       101 ~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~~g~l~~~~-----i  175 (249)
T PRK14831        101 EELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSE-----I  175 (249)
T ss_pred             HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----C
Confidence             111 11         12222      11123366788999999999999999999999999987654433322     7


Q ss_pred             chHhHHHHHHH
Q 028906          182 TEAHMSEALRA  192 (202)
Q Consensus       182 TEadm~eALka  192 (202)
                      ||..+++.|-.
T Consensus       176 ~e~~~~~~L~t  186 (249)
T PRK14831        176 DENLFESELYT  186 (249)
T ss_pred             CHHHHHHhhcc
Confidence            88888888753

>PRK14830 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.49  E-value=7.9e-07  Score=78.53  Aligned_cols=122  Identities=17%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchh---HHHh---------
Q 028906           66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKE---SILG---------  118 (202)
Q Consensus        66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e---~l~~---------  118 (202)
                      .|+|+||+.|...            .  .=..++.+++.||...||++|++|. ..-.+|++.+   .+|+         
T Consensus        22 ~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~  101 (251)
T PRK14830         22 IPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKF  101 (251)
T ss_pred             CCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4789999999942            2  2467999999999999999999998 5556677755   3332         


Q ss_pred             --hcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          119 --KLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       119 --~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                        .+.+.          ..+|.      ..-...+-.+.+++|+++.+-+|+..|+.|++.++++...+.-+.+     -
T Consensus       102 ~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~~~-----~  176 (251)
T PRK14830        102 VPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPE-----D  176 (251)
T ss_pred             HHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----h
Confidence              11111          12222      0111235568889999999999999999999999988744332222     3


Q ss_pred             cchHhHHHHHHH
Q 028906          181 FTEAHMSEALRA  192 (202)
Q Consensus       181 fTEadm~eALka  192 (202)
                      +||..+++.|..
T Consensus       177 I~e~~i~~~L~~  188 (251)
T PRK14830        177 ITEELISNYLMT  188 (251)
T ss_pred             CCHHHHHHHhCc
Confidence            788888888853

>PRK14827 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.43  E-value=8.5e-07  Score=80.25  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             cceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEecc-cchhhhchhH------HHhhc-cc--
Q 028906           67 LRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKES------ILGKL-NN--  122 (202)
Q Consensus        67 l~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e~------l~~~~-~n--  122 (202)
                      |+|+||+-|.-  =|            .-..++.+.+.||..+||+||+||.- ...+|++.+.      ++++. +.  
T Consensus        68 P~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~  147 (296)
T PRK14827         68 PNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRR  147 (296)
T ss_pred             CCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            67999999971  11            12567889999999999999999995 8889999876      32222 11  


Q ss_pred             -----CC----------cccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906          123 -----AT----------LFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (202)
Q Consensus       123 -----~~----------~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f  181 (202)
                           .+          ..|.     . .....+-.+.+|+|+++..-+|+..|+.|++.++++..++.-..++     +
T Consensus       148 ~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v~~g~l~~~~-----I  222 (296)
T PRK14827        148 DNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPER-----I  222 (296)
T ss_pred             HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhh-----c
Confidence                 10          1111     0 0112366788999999999999999999999999987655443333     7


Q ss_pred             chHhHHHHHHHh
Q 028906          182 TEAHMSEALRAV  193 (202)
Q Consensus       182 TEadm~eALkaV  193 (202)
                      ||..+++-|..-
T Consensus       223 ~e~~i~~~L~t~  234 (296)
T PRK14827        223 TESTIARHLQRP  234 (296)
T ss_pred             cHHHHHHHhccC
Confidence            888888887653

>PRK14836 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.42  E-value=7.1e-07  Score=78.97  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=85.7

Q ss_pred             CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---Hh---------
Q 028906           66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---LG---------  118 (202)
Q Consensus        66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~~---------  118 (202)
                      -|+|+||+.|..            +.  .=..++.+++.||...||++|++|. ..-.+|+.++.+   |+         
T Consensus        14 ~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~   93 (253)
T PRK14836         14 IPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDRE   93 (253)
T ss_pred             CCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999983            12  2478999999999999999999998 555557766532   11         


Q ss_pred             --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                        ++. +         ...+|.      .+....+-.+.+++|+++..=+|++.|+.|++.++++...+.-+.     ..
T Consensus        94 ~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~~-----~~  168 (253)
T PRK14836         94 VDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAP-----DE  168 (253)
T ss_pred             HHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCh-----Hh
Confidence              111 1         112222      111233567788999999999999999999999998875433222     23


Q ss_pred             cchHhHHHHHHH
Q 028906          181 FTEAHMSEALRA  192 (202)
Q Consensus       181 fTEadm~eALka  192 (202)
                      +||..++.-|-.
T Consensus       169 i~e~~i~~~L~~  180 (253)
T PRK14836        169 IDEALLAQHLAL  180 (253)
T ss_pred             CCHHHHHHHhcc
Confidence            888888887753

>PRK14828 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.42  E-value=1.3e-06  Score=77.41  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             CcceEEEEEecc---------cc------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhhc----cc
Q 028906           66 KLRYLAIVIESE---------EA------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGKL----NN  122 (202)
Q Consensus        66 kl~~LaiVvdse---------ea------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~~----~n  122 (202)
                      -|+|+||+.|.-         +.      .-..++.+++.||...||++|++|. ..-.+|++.+.   +|+-+    ++
T Consensus        26 ~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~  105 (256)
T PRK14828         26 VPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQ  105 (256)
T ss_pred             CCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            478999999983         11      2357899999999999999999998 34455666522   22111    11


Q ss_pred             ---C-----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcc
Q 028906          123 ---A-----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT  182 (202)
Q Consensus       123 ---~-----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fT  182 (202)
                         .           ..+|.      ......+..+.+|+|+++.+-+||+.|++|++.++++..++.-+.++. ...+|
T Consensus       106 ~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~~-~~~i~  184 (256)
T PRK14828        106 LAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDEL-AESVT  184 (256)
T ss_pred             HHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChhhc-cccCC
Confidence               1           11222      011134677888999999999999999999999999987654433221 22478


Q ss_pred             hHhHHHHHHHh
Q 028906          183 EAHMSEALRAV  193 (202)
Q Consensus       183 Eadm~eALkaV  193 (202)
                      |..++..|-..
T Consensus       185 e~~i~~~L~~~  195 (256)
T PRK14828        185 VDAISTHLYTG  195 (256)
T ss_pred             HHHHHHHhccC
Confidence            89999888543

>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

Probab=98.29  E-value=2e-06  Score=74.61  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=81.1

Q ss_pred             cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEe------------cccchhhhchhHHHhhc
Q 028906           67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLY------------DAEGILKKSKESILGKL  120 (202)
Q Consensus        67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lY------------D~~GvLKks~e~l~~~~  120 (202)
                      |+|+||+-|.  +=|            .-..++.+++-||...||++|++|            ..+++++=..+.+-+..
T Consensus         1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~   80 (221)
T cd00475           1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL   80 (221)
T ss_pred             CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence            6899999887  111            135688999999999999999999            44444433333332222


Q ss_pred             ---ccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906          121 ---NNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (202)
Q Consensus       121 ---~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f  181 (202)
                         .+.          ..+|.      ..-...+..+.+|+|+++++-||++.|+.|++.++++..+..-+..+     +
T Consensus        81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~~~~~~-----i  155 (221)
T cd00475          81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPED-----I  155 (221)
T ss_pred             HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----C
Confidence               111          12332      11112355688899999999999999999999999887654433222     7


Q ss_pred             chHhHHHHHHH
Q 028906          182 TEAHMSEALRA  192 (202)
Q Consensus       182 TEadm~eALka  192 (202)
                      ||..++.-|..
T Consensus       156 ~~~~~~~~L~~  166 (221)
T cd00475         156 DESTLNKHLYT  166 (221)
T ss_pred             CHHHHHHhhCc
Confidence            77777777653

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.

>PRK14834 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.27  E-value=6e-06  Score=73.04  Aligned_cols=125  Identities=14%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             cccC-cceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HH------
Q 028906           63 DIDK-LRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---IL------  117 (202)
Q Consensus        63 ~~~k-l~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~------  117 (202)
                      +.+. |+|+||+.|.--            .  +-..++.+++-||...||++|++|. ..-.+|+.++.   ||      
T Consensus        10 ~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~   89 (249)
T PRK14834         10 DAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLF   89 (249)
T ss_pred             CCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHH
Confidence            3344 679999999832            1  2357899999999999999999998 33344555432   21      


Q ss_pred             -----hhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028906          118 -----GKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ  176 (202)
Q Consensus       118 -----~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~  176 (202)
                           +.+.+.          ..+|.      ......+..+.+|+|++...=+|++.|++|++.++++..++.-+.+  
T Consensus        90 l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~~~--  167 (249)
T PRK14834         90 IRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPA--  167 (249)
T ss_pred             HHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChh--
Confidence                 222111          12222      1122346678899999999999999999999999998765544332  


Q ss_pred             cchhcchHhHHHHHHH
Q 028906          177 EEKIFTEAHMSEALRA  192 (202)
Q Consensus       177 ~~~~fTEadm~eALka  192 (202)
                         -+||..+++.|..
T Consensus       168 ---dI~e~~i~~~L~~  180 (249)
T PRK14834        168 ---SIDAETISANLDT  180 (249)
T ss_pred             ---hCCHHHHHHHhcc
Confidence               3888888888764

>PRK14840 undecaprenyl pyrophosphate synthase; Provisional

Probab=98.16  E-value=1e-05  Score=71.80  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=83.3

Q ss_pred             CcceEEEEEec--cccc----------------ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH----------
Q 028906           66 KLRYLAIVIES--EEAY----------------HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI----------  116 (202)
Q Consensus        66 kl~~LaiVvds--eea~----------------~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l----------  116 (202)
                      -|+|+||+-|.  +=|+                -..++.+++.||...||++|++|= ..-.+|++++.+          
T Consensus        18 ~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~   97 (250)
T PRK14840         18 LPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQ   97 (250)
T ss_pred             CCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence            36799999998  2222                246788999999999999999996 333335554432          


Q ss_pred             ----Hhhcc-cC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028906          117 ----LGKLN-NA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ  176 (202)
Q Consensus       117 ----~~~~~-n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~  176 (202)
                          .+.+. +.         ..+|+      .+-...+-.+.+|+|++..+-+|++.|+.|++.++++.-++.-+..  
T Consensus        98 l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~~~~~~~--  175 (250)
T PRK14840         98 LDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSD--  175 (250)
T ss_pred             HHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHHHhCCCChh--
Confidence                22221 11         12333      1112346778889999999999999999999999998754433222  


Q ss_pred             cchhcchHhHHHHHHHh
Q 028906          177 EEKIFTEAHMSEALRAV  193 (202)
Q Consensus       177 ~~~~fTEadm~eALkaV  193 (202)
                         -+||..++..|..-
T Consensus       176 ---~i~~~~i~~~L~~~  189 (250)
T PRK14840        176 ---DISEELISSYLDTS  189 (250)
T ss_pred             ---hCCHHHHHHHhccC
Confidence               27788887777543

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.92  E-value=5.6e-05  Score=66.74  Aligned_cols=125  Identities=16%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH--------------H
Q 028906           66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES--------------I  116 (202)
Q Consensus        66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~--------------l  116 (202)
                      -|+|+||+.|.  +=|            .=..++.+++.||...||++|++|= ..-.+|++++.              .
T Consensus         8 ~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~   87 (241)
T PRK14842          8 IPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETR   87 (241)
T ss_pred             CCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            37899999997  111            2357899999999999999999997 33334555432              2


Q ss_pred             HhhcccC----------Ccccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          117 LGKLNNA----------TLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       117 ~~~~~n~----------~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                      .+.+.+.          ..+|+     . +-...+-.+..|+|++.-.-+|++.|+.|++.++++.....-..    +..
T Consensus        88 ~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~----~~~  163 (241)
T PRK14842         88 LDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTL----EKP  163 (241)
T ss_pred             HHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCc----ccc
Confidence            2222111          12333     1 11233667889999999999999999999999998875443321    113


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||.+++..|-.-+
T Consensus       164 i~e~~~~~~L~t~~  177 (241)
T PRK14842        164 LKEKEFEKFLYTSP  177 (241)
T ss_pred             CCHHHHHHHhCcCC
Confidence            88999988886433

>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2

Probab=97.85  E-value=7e-05  Score=64.39  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---Hhhcc--------------cC---------Ccccc-----c
Q 028906           82 IPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---LGKLN--------------NA---------TLFEE-----A  129 (202)
Q Consensus        82 ~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~~~~~--------------n~---------~~~~~-----a  129 (202)
                      ..++.+++.||...||++|++|- ..-.+|++.+.+   |+-++              +.         ..+|.     .
T Consensus        24 ~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i  103 (223)
T PF01255_consen   24 AEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDLSLLPEELQKAI  103 (223)
T ss_dssp             HHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-GGGS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEeccCcCCHHHHHHH
Confidence            56788999999999999999997 224447665542   32221              11         12222     1


Q ss_pred             c-cccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhc
Q 028906          130 G-ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVA  194 (202)
Q Consensus       130 N-~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG  194 (202)
                      + -...+-.+.+|+|+++.+=+||+.|+.|++.++.++.+..-+..+     +||+.+++.|..-+
T Consensus       104 ~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~~~-----i~~~~i~~~L~~~~  164 (223)
T PF01255_consen  104 AEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSPED-----IDEELISSHLYTPD  164 (223)
T ss_dssp             HHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGGGG------SHHHHHHTSTTTT
T ss_pred             HHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCcccccc-----CCHHHHHhhccccC
Confidence            1 112245678999999999999999999999999988766554433     88888888776544

5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.73  E-value=0.0002  Score=63.77  Aligned_cols=121  Identities=14%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------
Q 028906           66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------  116 (202)
Q Consensus        66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------  116 (202)
                      -|+|+||+-|.  +=|            +-..++.+++.||...||++|++|= ..-.+|++++.+              
T Consensus        18 iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~   97 (253)
T PRK14832         18 IPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRE   97 (253)
T ss_pred             CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            37899999998  111            2357889999999999999999997 333335554432              


Q ss_pred             Hhhcc----------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          117 LGKLN----------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       117 ~~~~~----------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                      ++++.          +...+|.      ......+..+.+++|+++-.=+|++.|+.|++.++.+.-.+.-+.     ..
T Consensus        98 ~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~~~-----~~  172 (253)
T PRK14832         98 LAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSA-----DA  172 (253)
T ss_pred             HHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCh-----hh
Confidence            22221          1123333      112233677888999999999999999999999998764433222     23


Q ss_pred             cchHhHHHHHH
Q 028906          181 FTEAHMSEALR  191 (202)
Q Consensus       181 fTEadm~eALk  191 (202)
                      +||..++..|-
T Consensus       173 i~e~~i~~~L~  183 (253)
T PRK14832        173 VNEQLVEQHLY  183 (253)
T ss_pred             CCHHHHHHhhC
Confidence            78888887775

>PRK10240 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.65  E-value=0.00023  Score=62.33  Aligned_cols=106  Identities=12%  Similarity=0.189  Sum_probs=73.1

Q ss_pred             ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------HhhcccC----------Ccccc------c
Q 028906           81 HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------LGKLNNA----------TLFEE------A  129 (202)
Q Consensus        81 ~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------~~~~~n~----------~~~~~------a  129 (202)
                      -..++.+++.||...||++|++|= ..-.+|++++.+              .+.+.+.          ..+|.      .
T Consensus        22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~~l~~~i~  101 (229)
T PRK10240         22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIR  101 (229)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCHHHHHHHH
Confidence            367889999999999999999996 223334544322              1112111          13333      1


Q ss_pred             ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHH
Q 028906          130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALR  191 (202)
Q Consensus       130 N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALk  191 (202)
                      .....+..+.+|+|+++.+=+|++.|+.|++.++++..++.-+.++     +||..++.-|-
T Consensus       102 ~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~-----i~e~~i~~~L~  158 (229)
T PRK10240        102 KSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQ-----IDEEMLNQHIC  158 (229)
T ss_pred             HHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhh-----CCHHHHHHHhc
Confidence            1122367788899999999999999999999999988766544333     78888887774

>PRK14835 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.64  E-value=0.00028  Score=63.38  Aligned_cols=126  Identities=17%  Similarity=0.322  Sum_probs=80.4

Q ss_pred             CcceEEEEEecccc--------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhh--------
Q 028906           66 KLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGK--------  119 (202)
Q Consensus        66 kl~~LaiVvdseea--------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~--------  119 (202)
                      -|+|+||+.|.-.=              +-..++.+++.||...||++|++|= ..-.+|++.+.   ||+-        
T Consensus        41 ~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~  120 (275)
T PRK14835         41 LPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARRM  120 (275)
T ss_pred             CCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH
Confidence            36799999998221              1357889999999999999999996 22223444321   1111        


Q ss_pred             -----cc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccc
Q 028906          120 -----LN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (202)
Q Consensus       120 -----~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~  178 (202)
                           +. +         ...+|.      ..-...+-.+++++|++.-+=+|++.|+.|++.+.++...+.-+.++. .
T Consensus       121 ~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~~~g~~~~~~i-~  199 (275)
T PRK14835        121 AVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEV-A  199 (275)
T ss_pred             hchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChHHh-c
Confidence                 11 0         011121      001123556788999999999999999999999998876543322221 1


Q ss_pred             hhcchHhHHHHHHH
Q 028906          179 KIFTEAHMSEALRA  192 (202)
Q Consensus       179 ~~fTEadm~eALka  192 (202)
                      ...||.++++.|-.
T Consensus       200 ~~~~e~~i~~~L~~  213 (275)
T PRK14835        200 AELTPEHISAHLYT  213 (275)
T ss_pred             ccCCHHHHHHHhcc
Confidence            12578888777743

>PRK14841 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.61  E-value=0.0004  Score=60.99  Aligned_cols=120  Identities=15%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------
Q 028906           66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------  116 (202)
Q Consensus        66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------  116 (202)
                      -|+|+||+.|.-            +.  .=..++.+++.||...|||+|++|= ..-.+|++++.+              
T Consensus         3 ~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~   82 (233)
T PRK14841          3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDRE   82 (233)
T ss_pred             CCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            488999999871            11  2357899999999999999999996 333345544332              


Q ss_pred             HhhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          117 LGKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       117 ~~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                      .+.+...          ..+|.      ..-...+-.+++++|++.-.=+|++.|+.|++.+..+..++..       ..
T Consensus        83 ~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~-------~~  155 (233)
T PRK14841         83 MELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKK-------IE  155 (233)
T ss_pred             HHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCc-------CC
Confidence            1222111          12232      1111235667889999999999999999999999987655432       13


Q ss_pred             cchHhHHHHHHH
Q 028906          181 FTEAHMSEALRA  192 (202)
Q Consensus       181 fTEadm~eALka  192 (202)
                      .||..++.-|-.
T Consensus       156 i~~~~~~~~L~~  167 (233)
T PRK14841        156 LTEETFRQYLYL  167 (233)
T ss_pred             CCHHHHHHHhcc
Confidence            678888777753

>PRK14838 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.54  E-value=0.00035  Score=61.71  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=83.7

Q ss_pred             CcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhhcc------
Q 028906           66 KLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGKLN------  121 (202)
Q Consensus        66 kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~~~------  121 (202)
                      -|+|+||+-|.-  =|            .=..++.+++.||...||++|++|= ..-.+|++++.   ||+-+.      
T Consensus        10 ~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~~   89 (242)
T PRK14838         10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEE   89 (242)
T ss_pred             CCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            378999999971  11            1256889999999999999999997 33344666543   222111      


Q ss_pred             -------------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcc
Q 028906          122 -------------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT  182 (202)
Q Consensus       122 -------------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fT  182 (202)
                                   +...+|.      ..-...+-.+.+|+|++.=.=+|++.|+.|++.++.+.....-+.++     +|
T Consensus        90 ~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~-----i~  164 (242)
T PRK14838         90 TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEE-----IT  164 (242)
T ss_pred             HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCCCChhh-----CC
Confidence                         1112333      11123366788899999999999999999999999887554433222     78


Q ss_pred             hHhHHHHHHH
Q 028906          183 EAHMSEALRA  192 (202)
Q Consensus       183 Eadm~eALka  192 (202)
                      |..+++.|-.
T Consensus       165 e~~~~~~L~~  174 (242)
T PRK14838        165 EESISEHLTT  174 (242)
T ss_pred             HHHHHHHhcc
Confidence            8888887753

>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]

Probab=97.53  E-value=0.00053  Score=60.72  Aligned_cols=123  Identities=22%  Similarity=0.277  Sum_probs=86.9

Q ss_pred             cCcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHHHh-----------
Q 028906           65 DKLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESILG-----------  118 (202)
Q Consensus        65 ~kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l~~-----------  118 (202)
                      .-|+|+||+.|.-  =|            .-...+.+++.|+..+|||+|++|. .....|+.++.+-.           
T Consensus        15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~   94 (245)
T COG0020          15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE   94 (245)
T ss_pred             ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence            4578999999982  11            2357888999999999999999998 23333666543221           


Q ss_pred             ---hc-ccC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccch
Q 028906          119 ---KL-NNA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (202)
Q Consensus       119 ---~~-~n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~  179 (202)
                         ++ ++.         +.+|.      ......+..+..++|+++..=+|++.|+.|++.+.+++..+.-+.++    
T Consensus        95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~----  170 (245)
T COG0020          95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPED----  170 (245)
T ss_pred             HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCCCChHH----
Confidence               11 111         12222      11223366788999999999999999999999999999877765444    


Q ss_pred             hcchHhHHHHHHH
Q 028906          180 IFTEAHMSEALRA  192 (202)
Q Consensus       180 ~fTEadm~eALka  192 (202)
                       +||.-++.-|..
T Consensus       171 -I~e~~i~~~L~~  182 (245)
T COG0020         171 -IDEELISSHLYT  182 (245)
T ss_pred             -cCHHHHHHhhcc
Confidence             788877777766

>PRK14833 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.42  E-value=0.00088  Score=58.88  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---H-----------
Q 028906           66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---I-----------  116 (202)
Q Consensus        66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l-----------  116 (202)
                      -|+|+||+-|.-            +.  .-..++.+++.||...||++|++|= ..-.+|++.+.   +           
T Consensus         4 ~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~   83 (233)
T PRK14833          4 TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDE   83 (233)
T ss_pred             CCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHHH
Confidence            378999999871            11  2357899999999999999999996 22233444431   1           


Q ss_pred             HhhcccC----------Ccccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          117 LGKLNNA----------TLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       117 ~~~~~n~----------~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                      .+.+.+.          ..+|.     . .-...+-.+.+|+|++.-.=+|++.|+.|++.+.++.....+ .     ..
T Consensus        84 ~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~~~~-~-----~~  157 (233)
T PRK14833         84 RSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIG-E-----LE  157 (233)
T ss_pred             HHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhcccC-c-----cc
Confidence            1222111          12222     1 112236677889999999999999999999999987521111 1     13


Q ss_pred             cchHhHHHHHH
Q 028906          181 FTEAHMSEALR  191 (202)
Q Consensus       181 fTEadm~eALk  191 (202)
                      +||..+++.|-
T Consensus       158 i~e~~l~~~L~  168 (233)
T PRK14833        158 SLEEEISNCLD  168 (233)
T ss_pred             CCHHHHHHHhc
Confidence            78888887774

>TIGR00055 uppS undecaprenyl diphosphate synthase

Probab=97.39  E-value=0.00097  Score=58.47  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------Hhhcc----------cCCcccc------c
Q 028906           81 HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------LGKLN----------NATLFEE------A  129 (202)
Q Consensus        81 ~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------~~~~~----------n~~~~~~------a  129 (202)
                      -...+.+.+.||...||++|++|= ..-.+|++++.+              .+.+.          +...+|.      .
T Consensus        28 G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i~  107 (226)
T TIGR00055        28 GVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIK  107 (226)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHH
Confidence            357889999999999999999997 333335544431              11111          1123333      1


Q ss_pred             ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhc
Q 028906          130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVA  194 (202)
Q Consensus       130 N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG  194 (202)
                      .-...+..+.+|+|++.-.=+|++.|+.|++.++.+.....-..+     .+||..++.-|-.-+
T Consensus       108 ~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~-----~i~e~~~~~~L~t~~  167 (226)
T TIGR00055       108 KAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPE-----DIDEETLNKHLYTAN  167 (226)
T ss_pred             HHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChh-----hCCHHHHHHhhccCC
Confidence            112236678899999999999999999999999988765443332     388988888875433

Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional

Probab=97.26  E-value=0.0012  Score=58.11  Aligned_cols=120  Identities=13%  Similarity=0.216  Sum_probs=79.6

Q ss_pred             CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHh---------
Q 028906           66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILG---------  118 (202)
Q Consensus        66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~---------  118 (202)
                      -|+|+||+.|.  +=|            +-..++.+.+.||...||++|+||= ..-.+|++++.   ||+         
T Consensus         6 ~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~   85 (230)
T PRK14837          6 LPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSE   85 (230)
T ss_pred             CCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            37899999998  111            1356889999999999999999996 23333554442   111         


Q ss_pred             --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                        .+. +         ...+|.      .+-...+-.+.+|+|++.=.=.|++.|+.|++.++..    .     .....
T Consensus        86 ~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~----~-----~~~~~  156 (230)
T PRK14837         86 FNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSS----G-----LDLET  156 (230)
T ss_pred             HHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhc----C-----CChhh
Confidence              111 1         112232      1111236678899999999999999999999999842    1     11234


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||..++..|-.-+
T Consensus       157 i~e~~~~~~L~~~~  170 (230)
T PRK14837        157 LNENVFSKFLDNPE  170 (230)
T ss_pred             CCHHHHHHhhccCC
Confidence            88888888875433

>PRK14839 undecaprenyl pyrophosphate synthase; Provisional

Probab=96.93  E-value=0.0031  Score=55.89  Aligned_cols=117  Identities=17%  Similarity=0.269  Sum_probs=79.3

Q ss_pred             hccccCcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHh----
Q 028906           61 ALDIDKLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILG----  118 (202)
Q Consensus        61 ~l~~~kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~----  118 (202)
                      +|+...|+|+||+-|.-            +.  .-..++.+++.||...||++|++|= ..-.+|++++.   ||+    
T Consensus         4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~   83 (239)
T PRK14839          4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA   83 (239)
T ss_pred             ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence            57788899999999971            11  1357889999999999999999997 33344555543   221    


Q ss_pred             -------hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCcc
Q 028906          119 -------KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI  175 (202)
Q Consensus       119 -------~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~  175 (202)
                             .+. +         ...+|.      ..-...+..+++|+|++.=.=.|++.|+.|++.+.       + .+ 
T Consensus        84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~-------~-~~-  154 (239)
T PRK14839         84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL-------G-PE-  154 (239)
T ss_pred             HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc-------C-cc-
Confidence                   111 1         112222      11112366788999999999999999999999864       1 11 


Q ss_pred             ccchhcchHhHHHHH
Q 028906          176 QEEKIFTEAHMSEAL  190 (202)
Q Consensus       176 ~~~~~fTEadm~eAL  190 (202)
                          ..||..+++-|
T Consensus       155 ----~i~e~~~~~~l  165 (239)
T PRK14839        155 ----GLSREAFSDLL  165 (239)
T ss_pred             ----cCCHHHHHHHh
Confidence                26777777766

>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional

Probab=96.07  E-value=0.036  Score=51.32  Aligned_cols=100  Identities=12%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH------H--------
Q 028906           67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI------L--------  117 (202)
Q Consensus        67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l------~--------  117 (202)
                      |+|+||+.|.  +=|            .-...+.+.+.||...||++|++|= ..-.+||+++.+      +        
T Consensus        20 P~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~~~~   99 (322)
T PTZ00349         20 IKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILINED   99 (322)
T ss_pred             CCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHHHhh
Confidence            6799999998  111            1256889999999999999999997 333346665543      1        


Q ss_pred             ---hhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHH----------HHHHHHHHHH
Q 028906          118 ---GKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMKY  166 (202)
Q Consensus       118 ---~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIa----------KAAnlLc~~~  166 (202)
                         +.+.+.          ..+|.      ..-...+-.+.+|+|++.=+=.|+..|+          .|++.+..+.
T Consensus       100 ~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~~  177 (322)
T PTZ00349        100 FFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEK  177 (322)
T ss_pred             hhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHHh
Confidence               112111          12222      1112336778899999988888999999          7999988774

>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]

Probab=92.50  E-value=0.68  Score=42.24  Aligned_cols=111  Identities=15%  Similarity=0.213  Sum_probs=74.8

Q ss_pred             hhcc-ccCcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH-------
Q 028906           60 KALD-IDKLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI-------  116 (202)
Q Consensus        60 ~~l~-~~kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l-------  116 (202)
                      +.++ --.|+|+|.+-|..  =|            .-...++++|.||--+||++|++|- .--.+|++++..       
T Consensus        29 ~~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~  108 (271)
T KOG1602|consen   29 RLLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLA  108 (271)
T ss_pred             HHHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHH
Confidence            4444 34678999999871  11            1467899999999999999999997 333556655432       


Q ss_pred             -------Hhhc-------------ccCCcccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcC
Q 028906          117 -------LGKL-------------NNATLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLG  170 (202)
Q Consensus       117 -------~~~~-------------~n~~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~  170 (202)
                             .+.-             .|....|+     + .-...+..+.+.+|.+.-+=-||..|+.|.+.++...-.+.
T Consensus       109 ~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~~~g~  188 (271)
T KOG1602|consen  109 LEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRVKDGD  188 (271)
T ss_pred             HHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhhhcCC
Confidence                   1110             01122222     1 11122667788999999999999999999999998876433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 14  ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLR--YLA 71
                   L II   I   +  W    H+ C   + +I S +      L+  + R  +  
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDR 377

Query: 72  IVIESEEAYHIPA-VIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAG 130
           + +    A HIP  ++ L+ W                ++K     ++ KL+  +L E+  
Sbjct: 378 LSVFPPSA-HIPTILLSLI-W--------------FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 131 ESNLLLDHKHITLEFASFPDGKEAV 155
           + + +     I LE     + + A+
Sbjct: 422 KESTISIP-SIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	99.05
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	99.02
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	99.0
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	98.97
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	98.85
3sgv_B	253	Undecaprenyl pyrophosphate synthase; alpha/beta, t	98.21
4h8e_A	256	Undecaprenyl pyrophosphate synthase; alpha-helix,	98.12
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	97.64

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*

Probab=99.05  E-value=4.7e-10  Score=95.93  Aligned_cols=128  Identities=16%  Similarity=0.253  Sum_probs=92.1

Q ss_pred             CcceEEEEEeccc--------c-------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhh-------
Q 028906           66 KLRYLAIVIESEE--------A-------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGK-------  119 (202)
Q Consensus        66 kl~~LaiVvdsee--------a-------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~-------  119 (202)
                      -|+|+||+.|...        -       .-+.++.+++.||..+||++|+||+ ..+.+|+.++.   +|+-       
T Consensus         2 iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~~   81 (227)
T 2vg0_A            2 LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEE   81 (227)
T ss_dssp             CCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHHH
Confidence            3789999999732        1       2468999999999999999999999 59999999852   2222       


Q ss_pred             -cccCC-----------ccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906          120 -LNNAT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (202)
Q Consensus       120 -~~n~~-----------~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f  181 (202)
                       +..++           .+|..      .-...+..+.+|+|++++.-+||+.|+.|++.+++++.++.-+.++. ...+
T Consensus        82 ~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~~g~l~~~~~-~~~I  160 (227)
T 2vg0_A           82 ICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEEL-VDAV  160 (227)
T ss_dssp             HTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHH-HHHC
T ss_pred             HhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhHh-hccC
Confidence             21111           11110      01133567889999999999999999999999999987654322111 2248


Q ss_pred             chHhHHHHHHHhc
Q 028906          182 TEAHMSEALRAVA  194 (202)
Q Consensus       182 TEadm~eALkaVG  194 (202)
                      ||..+++-|...+
T Consensus       161 ~e~~i~~~L~t~~  173 (227)
T 2vg0_A          161 TVEGISENLYTSG  173 (227)
T ss_dssp             CHHHHHHHSTTTT
T ss_pred             CHHHHHHhhccCC
Confidence            9999999886544

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A

Probab=99.02  E-value=4.8e-10  Score=99.25  Aligned_cols=124  Identities=17%  Similarity=0.213  Sum_probs=90.0

Q ss_pred             CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchh---HHHhhcc------
Q 028906           66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKE---SILGKLN------  121 (202)
Q Consensus        66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e---~l~~~~~------  121 (202)
                      -|+|+||+.|..            +.  .-..++.+++.||..+||++|+||+ ....+|+.++   .||+-++      
T Consensus        55 iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~~  134 (284)
T 2vg3_A           55 LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRR  134 (284)
T ss_dssp             SCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence            378999999973            11  2468999999999999999999999 5666777766   2322111      


Q ss_pred             ---------------cCCccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          122 ---------------NATLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       122 ---------------n~~~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                                     +...+|..      .....+..+.+|+|++++.-+||+.|++|++.|++++..+.-+.+     -
T Consensus       135 ~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~~g~l~~~-----d  209 (284)
T 2vg3_A          135 RDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPE-----R  209 (284)
T ss_dssp             HHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCGG-----G
T ss_pred             HHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----H
Confidence                           11122220      012335678899999999999999999999999999876654332     2


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||..+++-|..-+
T Consensus       210 I~e~~i~~~L~t~~  223 (284)
T 2vg3_A          210 ITESTIARHLQRPD  223 (284)
T ss_dssp             CCHHHHHHHSSSTT
T ss_pred             CCHHHHHHHhccCC
Confidence            89999998886544

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*

Probab=99.00  E-value=6.2e-10  Score=96.93  Aligned_cols=124  Identities=15%  Similarity=0.187  Sum_probs=83.6

Q ss_pred             CcceEEEEEeccc------------cc--ChHHHHHHHHHHHHhccceeEEecc-cchhhhchh--------------HH
Q 028906           66 KLRYLAIVIESEE------------AY--HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKE--------------SI  116 (202)
Q Consensus        66 kl~~LaiVvdsee------------a~--~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e--------------~l  116 (202)
                      +|+|+||+.|..-            .|  -+.++.+++.||..+||++|+||+- .-.+|+.++              ..
T Consensus        17 ~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~~l~~~   96 (253)
T 3qas_B           17 GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSE   96 (253)
T ss_dssp             CCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CTHHHHH
T ss_pred             CCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHHHHHHH
Confidence            4589999999832            11  4689999999999999999999993 233455432              21


Q ss_pred             Hhhcc----------cCCccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          117 LGKLN----------NATLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       117 ~~~~~----------n~~~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                      ++++.          +...+|..      .-...+..+.+|+|++++.-+||+.|++|++.+++++..+.-+.++     
T Consensus        97 ~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v~~g~l~~~~-----  171 (253)
T 3qas_B           97 VKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ-----  171 (253)
T ss_dssp             HHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHTTSCCGGG-----
T ss_pred             HHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHH-----
Confidence            22221          11222321      0123356788999999999999999999999999998766543333     


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||..+++-|...+
T Consensus       172 I~e~~i~~~L~t~~  185 (253)
T 3qas_B          172 IDEEMLNQHVCMHE  185 (253)
T ss_dssp             CCHHHHHTTSTTTT
T ss_pred             CCHHHHHHhhccCC
Confidence            89999888776544

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1

Probab=98.97  E-value=1.1e-09  Score=94.99  Aligned_cols=124  Identities=19%  Similarity=0.244  Sum_probs=82.7

Q ss_pred             CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhch-----------hHHHh-
Q 028906           66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK-----------ESILG-  118 (202)
Q Consensus        66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~-----------e~l~~-  118 (202)
                      -|+|+||+.|..-            .  .-+.++.+++.||..+||++|+||+ ....+|+.+           +.+-+ 
T Consensus        20 iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~   99 (249)
T 1f75_A           20 IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTF   99 (249)
T ss_dssp             SCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHHHH
T ss_pred             CCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHHHH
Confidence            3789999999831            1  2478999999999999999999999 444444443           22222 


Q ss_pred             --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                        ++. +         ...+|.      ......+..+.+|+|++++.-+||+.|+.|++.++++...+.-+.++     
T Consensus       100 ~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~~g~l~~~~-----  174 (249)
T 1f75_A          100 LPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE-----  174 (249)
T ss_dssp             HHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG-----
T ss_pred             HHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----
Confidence              221 1         112222      01122366788999999999999999999999999998765443322     


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||..+++-|...|
T Consensus       175 I~e~~i~~~L~t~~  188 (249)
T 1f75_A          175 ISETHFNEYLFTAN  188 (249)
T ss_dssp             CSHHHHGGGSTTTT
T ss_pred             CCHHHHHHhhccCC
Confidence            88988888776544

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A

Probab=98.85  E-value=1.3e-09  Score=94.40  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhch---hHHHh---------
Q 028906           66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK---ESILG---------  118 (202)
Q Consensus        66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~---e~l~~---------  118 (202)
                      -|+|+||+.|...            .  .-+.++.+++.||..+||++|+||+ ....+|+.+   +.+|+         
T Consensus        15 iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~   94 (245)
T 2d2r_A           15 TLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDE   94 (245)
T ss_dssp             CCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence            4789999999832            1  1468999999999999999999999 455566664   22322         


Q ss_pred             --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906          119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (202)
Q Consensus       119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~  180 (202)
                        ++. +         ...+|.      ......+..+.+|+|++++.-+||+.|++|++.++++...  +    .+..-
T Consensus        95 ~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~~--~----l~~~~  168 (245)
T 2d2r_A           95 RSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPS--N----ISLLE  168 (245)
T ss_dssp             HHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCT--T----GGGCS
T ss_pred             HHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh--c----CChhh
Confidence              221 1         112222      0011235678899999999999999999999999998655  2    12223


Q ss_pred             cchHhHHHHHHHhc
Q 028906          181 FTEAHMSEALRAVA  194 (202)
Q Consensus       181 fTEadm~eALkaVG  194 (202)
                      +||..+++-|..-|
T Consensus       169 I~e~~i~~~L~t~~  182 (245)
T 2d2r_A          169 SLENEISNRLDTRN  182 (245)
T ss_dssp             CCHHHHHTTSTTTT
T ss_pred             CCHHHHHHHhccCC
Confidence            89999888776544

>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...

Probab=98.21  E-value=1.6e-06  Score=75.69  Aligned_cols=128  Identities=15%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             ccccCcceEEEEEec--cccc------------ChHHHHHHHHHHHHhccceeEEec-ccchhhhch-----------hH
Q 028906           62 LDIDKLRYLAIVIES--EEAY------------HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK-----------ES  115 (202)
Q Consensus        62 l~~~kl~~LaiVvds--eea~------------~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~-----------e~  115 (202)
                      +...-|+|+||+-|.  +=|+            -..++.+.+.||..+||++|+||= ..-.+|+.+           +.
T Consensus        13 ~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~   92 (253)
T 3sgv_B           13 LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWA   92 (253)
T ss_dssp             CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHH
Confidence            334457899999998  2221            357889999999999999999994 111123322           22


Q ss_pred             HHh---hcc----------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028906          116 ILG---KLN----------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ  176 (202)
Q Consensus       116 l~~---~~~----------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~  176 (202)
                      +-+   ++.          +...+|.      ..-...+..+.+|+|++...=+|++.|++|++.++.+...+.-+.++ 
T Consensus        93 l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~~g~l~~~~-  171 (253)
T 3sgv_B           93 LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ-  171 (253)
T ss_dssp             HHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHHTSSCGGG-
T ss_pred             HHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhh-
Confidence            222   221          1122332      11112366788999999999999999999999999998765543322 


Q ss_pred             cchhcchHhHHHHHHHhc
Q 028906          177 EEKIFTEAHMSEALRAVA  194 (202)
Q Consensus       177 ~~~~fTEadm~eALkaVG  194 (202)
                          +||..+++-|-.-|
T Consensus       172 ----I~e~~i~~~L~t~~  185 (253)
T 3sgv_B          172 ----IDEEMLNQHVCMHE  185 (253)
T ss_dssp             ----CCHHHHHTTSTTTT
T ss_pred             ----CCHHHHHHhhcccC
Confidence                88988887765433

>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}

Probab=98.12  E-value=3e-06  Score=74.15  Aligned_cols=128  Identities=18%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             ccccC-cceEEEEEeccc--c------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH----------
Q 028906           62 LDIDK-LRYLAIVIESEE--A------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES----------  115 (202)
Q Consensus        62 l~~~k-l~~LaiVvdsee--a------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~----------  115 (202)
                      ++.++ |+|+||+-|.--  |            .-..++.+.+.||...||++|+||= ..-..|+.++.          
T Consensus        19 ~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~   98 (256)
T 4h8e_A           19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVN   98 (256)
T ss_dssp             CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHH
Confidence            44344 779999999822  1            2356899999999999999999996 23334555433          


Q ss_pred             ----HHhhcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCcc
Q 028906          116 ----ILGKLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI  175 (202)
Q Consensus       116 ----l~~~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~  175 (202)
                          ..+++. +         ...+|.      ..-...+..+.+|+|++...=+|++.|+.|++.++.+...+.-+.++
T Consensus        99 ~l~~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~l~~~~  178 (256)
T 4h8e_A           99 FLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDI  178 (256)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCChhh
Confidence                222221 1         112333      11123467788999999999999999999999999998766544333


Q ss_pred             ccchhcchHhHHHHHHHhc
Q 028906          176 QEEKIFTEAHMSEALRAVA  194 (202)
Q Consensus       176 ~~~~~fTEadm~eALkaVG  194 (202)
                           +||..+++.|-.-|
T Consensus       179 -----I~e~~i~~~L~t~~  192 (256)
T 4h8e_A          179 -----IDETYINNHLMTKD  192 (256)
T ss_dssp             -----CCHHHHHTTSTTTT
T ss_pred             -----CCHHHHHHhCCCCC
Confidence                 89999888775544

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0

Probab=97.64  E-value=0.00017  Score=62.08  Aligned_cols=114  Identities=15%  Similarity=0.284  Sum_probs=77.2

Q ss_pred             cCcceEEEEEec--ccc----------c--ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---H--------h
Q 028906           65 DKLRYLAIVIES--EEA----------Y--HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---L--------G  118 (202)
Q Consensus        65 ~kl~~LaiVvds--eea----------~--~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~--------~  118 (202)
                      .-|+|+||+-|.  +=|          |  -..++.+.+.||..+||++|+||= ..-..|+.++..   |        +
T Consensus         5 ~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~~   84 (225)
T 3ugs_B            5 NELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDE   84 (225)
T ss_dssp             CCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHHH
Confidence            458999999997  111          1  357889999999999999999997 333456665432   1        2


Q ss_pred             h---cccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccch
Q 028906          119 K---LNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (202)
Q Consensus       119 ~---~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~  179 (202)
                      +   +...          ..+|.      ..-...+..+.+|+|++.-.=+|++.|+.|++.+..    ..   ++    
T Consensus        85 ~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~----~g---~~----  153 (225)
T 3ugs_B           85 ALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIE----KK---LE----  153 (225)
T ss_dssp             HHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHH----TT---CC----
T ss_pred             HHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHH----hc---Cc----
Confidence            1   1111          12222      111123677889999999999999999999999932    11   22    


Q ss_pred             hcchHhHHHHH
Q 028906          180 IFTEAHMSEAL  190 (202)
Q Consensus       180 ~fTEadm~eAL  190 (202)
                       +||..+++-|
T Consensus       154 -I~e~~i~~~L  163 (225)
T 3ugs_B          154 -LNEENLTQNL  163 (225)
T ss_dssp             -CSHHHHHHTS
T ss_pred             -CCHHHHHHhc
Confidence             8888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1ueha_	228	Undecaprenyl diphosphate synthase {Escherichia col	98.33
d1f75a_	229	Undecaprenyl diphosphate synthase {Micrococcus lut	97.94

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=5.9e-07  Score=74.69  Aligned_cols=123  Identities=13%  Similarity=0.184  Sum_probs=83.0

Q ss_pred             ccCcceEEEEEec-------c-----cc--cChHHHHHHHHHHHHhccceeEEe------------cccchhhhchhHHH
Q 028906           64 IDKLRYLAIVIES-------E-----EA--YHIPAVIQLLQWLVDIGVKHVCLY------------DAEGILKKSKESIL  117 (202)
Q Consensus        64 ~~kl~~LaiVvds-------e-----ea--~~~~kv~~Ll~Wl~~iGVk~v~lY------------D~~GvLKks~e~l~  117 (202)
                      ...|+|+||+.|.       .     +.  +-..++.+++.||...||++|++|            ..+.+++-..+.+.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l~   82 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD   82 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHHH
Confidence            4579999999995       0     11  236789999999999999999999            45555555555544


Q ss_pred             hhcc----c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccc
Q 028906          118 GKLN----N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (202)
Q Consensus       118 ~~~~----n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~  178 (202)
                      +...    +         ...+|.      ......+-.+.+|+|++.-.=+|++.|++|++.++.+..+..-..++   
T Consensus        83 ~~~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~---  159 (228)
T d1ueha_          83 SEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ---  159 (228)
T ss_dssp             HTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGGG---
T ss_pred             HhHHHHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHHHhCCCCHhH---
Confidence            3321    1         112222      11122356788999999999999999999999999998766554433   


Q ss_pred             hhcchHhHHHHHH
Q 028906          179 KIFTEAHMSEALR  191 (202)
Q Consensus       179 ~~fTEadm~eALk  191 (202)
                        +||..+.+-|-
T Consensus       160 --i~~~~~~~~l~  170 (228)
T d1ueha_         160 --IDEEMLNQHVC  170 (228)
T ss_dssp             --CCHHHHHTTST
T ss_pred             --hhhhheecccc
Confidence              67766655443

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

Probab=97.94  E-value=8.7e-06  Score=67.57  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=80.5

Q ss_pred             cceEEEEEec------------ccc--cChHHHHHHHHHHHHhccceeEEec------------ccchh---hhchhHHH
Q 028906           67 LRYLAIVIES------------EEA--YHIPAVIQLLQWLVDIGVKHVCLYD------------AEGIL---KKSKESIL  117 (202)
Q Consensus        67 l~~LaiVvds------------eea--~~~~kv~~Ll~Wl~~iGVk~v~lYD------------~~GvL---Kks~e~l~  117 (202)
                      |+|+||+.|.            .+.  +-..++.+++-||...||+++++|-            ++.++   ++..+...
T Consensus         8 P~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~~l~~~~   87 (229)
T d1f75a_           8 PKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTFL   87 (229)
T ss_dssp             CSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHHHHH
T ss_pred             CCeEEEeccCcHHHHHHCCCChhHHHHHHHHHHHHHHHHHHhcCCceEEEeeehhhhcccchHHHHHHHHHHHHHHHHHh
Confidence            5699999973            111  2477899999999999999999995            22222   22222222


Q ss_pred             hhcccCC----------cccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906          118 GKLNNAT----------LFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (202)
Q Consensus       118 ~~~~n~~----------~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f  181 (202)
                      +.+...+          .+|.      ......+-.+.+|+|++.-.=+||+.|++|++.+..+........++     .
T Consensus        88 ~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~~~~~~~~~~-----i  162 (229)
T d1f75a_          88 PELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE-----I  162 (229)
T ss_dssp             HHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG-----C
T ss_pred             hhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHhcCCCCeEEEEeccCcchhhHHHHHHHHHhhhcccccchhh-----h
Confidence            3322111          2222      11223366888999999999999999999999999988776654433     6


Q ss_pred             chHhHHHHHH
Q 028906          182 TEAHMSEALR  191 (202)
Q Consensus       182 TEadm~eALk  191 (202)
                      ||..+++.|-
T Consensus       163 ~e~~~~~~L~  172 (229)
T d1f75a_         163 SETHFNEYLF  172 (229)
T ss_dssp             SHHHHGGGST
T ss_pred             hHhhHHHhcC
Confidence            7777766553