Citrus Sinensis ID: 028907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEccccccccccEEEEEcEEEcccccHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccEEEEEEcc
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHHHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHcccccccEEEEEEEEc
makprysrfptrkssssTLILTLLIMFTFAILILLAFGIlsmpsssgdsrkandLSSIVRKSmersegdegrAEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplengeglqvlhyeagqkyephfdyfmdefntknggQRMATVLMYL
makprysrfptrksssstLILTLLIMFTFAILILLAFGILSMpsssgdsrkandlSSIVRKsmersegdegraeqWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
MAKPRYSRFPTRKsssstliltllimftfailillafgilsMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
*****************TLILTLLIMFTFAILILLAFGIL**********************************QWVEVISWEPRAFVYHNFLSKEECEYLINLATP**************************FLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTK*************
****************STLILTLLIMFTFAILILLAFGI*******************************GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV****GKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
***************SSTLILTLLIMFTFAILILLAFGILSMP************SSIVR*************EQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMR*********************GTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
***************SSTLILTLLIMFTFAILILLAFGILSMPS***********SSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.623 0.233 0.361 2e-17
P54001534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.354 2e-15
Q60715534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.338 4e-14
Q10576 559 Prolyl 4-hydroxylase subu no no 0.623 0.225 0.330 5e-14
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.330 1e-13
P13674534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.330 1e-13
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.594 0.224 0.330 1e-13
P16924516 Prolyl 4-hydroxylase subu yes no 0.594 0.232 0.346 2e-13
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.599 0.226 0.330 4e-13
O15460535 Prolyl 4-hydroxylase subu no no 0.599 0.226 0.317 5e-12
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L 
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
              D +I  + +RI DFT       E LQV +Y  G  Y+PHFD+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 193 QRMATVLMYL 202
            R+ATVL Y+
Sbjct: 438 NRIATVLFYM 447
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
357483927204 Prolyl 4-hydroxylase alpha-2 subunit [Me 1.0 0.990 0.763 6e-89
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 1.0 0.698 0.763 1e-88
147800995288 hypothetical protein VITISV_014644 [Viti 1.0 0.701 0.762 7e-87
225468574288 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.701 0.762 8e-87
363806698289 uncharacterized protein LOC100806046 [Gl 0.995 0.695 0.779 2e-86
255633460207 unknown [Glycine max] 1.0 0.975 0.764 3e-86
240256489289 iron ion binding / oxidoreductase/ oxido 1.0 0.698 0.747 5e-86
10177121267 prolyl 4-hydroxylase, alpha subunit-like 1.0 0.756 0.747 6e-86
356540840290 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.696 0.764 6e-86
297797785266 oxidoreductase [Arabidopsis lyrata subsp 1.0 0.759 0.742 2e-85
>gi|357483927|ref|XP_003612250.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513585|gb|AES95208.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 155/203 (76%), Positives = 181/203 (89%), Gaps = 1/203 (0%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIV 59
           MAK RYSR P+RKSSS  TLI +L I FTF ILILL FGILS+PSS+ +  K NDL+SIV
Sbjct: 1   MAKSRYSRLPSRKSSSPYTLIFSLFIAFTFLILILLVFGILSIPSSNQNLPKPNDLTSIV 60

Query: 60  RKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDT 119
             +++R++ +EG+ EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P M KSTVVDS+T
Sbjct: 61  HNTVDRNDDEEGKGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPSMHKSTVVDSET 120

Query: 120 GKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHF 179
           GKSKDSRVRTSSGTFLARGRDKI+R+IEK+IADFTF P+E+GEGLQVLHYE GQKYEPH+
Sbjct: 121 GKSKDSRVRTSSGTFLARGRDKIVRNIEKKIADFTFIPVEHGEGLQVLHYEVGQKYEPHY 180

Query: 180 DYFMDEFNTKNGGQRMATVLMYL 202
           DYF+DEFNTKNGGQR+ATVLMYL
Sbjct: 181 DYFLDEFNTKNGGQRIATVLMYL 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255633460|gb|ACU17088.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10177121|dbj|BAB10411.1| prolyl 4-hydroxylase, alpha subunit-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information
>gi|297797785|ref|XP_002866777.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312612|gb|EFH43036.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 1.0 0.698 0.584 2.7e-59
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.995 0.700 0.594 2.2e-57
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.792 0.549 0.685 2.3e-55
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.797 0.555 0.628 5.2e-49
TAIR|locus:2088892 288 AT3G28490 [Arabidopsis thalian 0.608 0.427 0.564 9.8e-32
TAIR|locus:2144960 298 AT5G18900 [Arabidopsis thalian 0.623 0.422 0.5 3.8e-30
TAIR|locus:2081106 299 P4H2 "prolyl 4-hydroxylase 2" 0.623 0.421 0.507 2.7e-29
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.618 0.441 0.543 4.4e-29
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.589 0.437 0.496 7.3e-27
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.668 0.468 0.311 3.3e-15
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 118/202 (58%), Positives = 139/202 (68%)

Query:     1 MAKPRYSRFPTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSSSGDSRKANDLSSIVR 60
             MA+PR  R   RK                            +PS++  S KANDL+SIVR
Sbjct:     2 MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query:    61 KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
             K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct:    62 KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query:   121 KSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFD 180
             KS DSRVRTSSGTFLA              +DFTF P+E+GEGLQVLHYE GQKYEPH+D
Sbjct:   122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQKYEPHYD 181

Query:   181 YFMDEFNTKNGGQRMATVLMYL 202
             YFMDE+NT+NGGQR+ATVLMYL
Sbjct:   182 YFMDEYNTRNGGQRIATVLMYL 203
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PLN00052 310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 2e-49
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 3e-22
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  162 bits (411), Expect = 2e-49
 Identities = 70/126 (55%), Positives = 90/126 (71%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           V+ +SW+PR FVY  FLS  EC++L+ LA   +++S V D+ +GKS  S VRTSSG FL 
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLD 106

Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMA 196
           + +D ++  IE+RIA +TF P EN E +Q+L YE GQKYEPHFDYF D+ N   GG R A
Sbjct: 107 KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYA 166

Query: 197 TVLMYL 202
           TVLMYL
Sbjct: 167 TVLMYL 172

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PLN00052 310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.88
PRK05467 226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.15
PHA02813 354 hypothetical protein; Provisional 98.05
PHA02869 418 C4L/C10L-like gene family protein; Provisional 97.94
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 97.02
COG3128 229 PiuC Uncharacterized iron-regulated protein [Funct 96.51
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 93.87
KOG3200224 consensus Uncharacterized conserved protein [Funct 93.61
KOG3710 280 consensus EGL-Nine (EGLN) protein [Signal transduc 92.44
TIGR02408 277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 92.36
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 91.35
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 90.1
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 89.45
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 88.53
KOG3959 306 consensus 2-Oxoglutarate- and iron-dependent dioxy 85.64
PHA02866 333 Hypothetical protein; Provisional 83.04
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-37  Score=273.48  Aligned_cols=132  Identities=53%  Similarity=0.909  Sum_probs=123.5

Q ss_pred             CCCCceEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHH
Q 028907           71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  150 (202)
Q Consensus        71 ~~~~~~vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri  150 (202)
                      ...+.|+|+|||+|+|++||||||++||++||++|++++++|+++++.+|+...+++|+|+++|+++.+++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999887777777889999999999988899999999999


Q ss_pred             HhhhCCCCCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907          151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL  202 (202)
Q Consensus       151 ~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL  202 (202)
                      ++++|+|.+++|++||+||++||+|++|+|+|.+..+...+|+|++|+|+||
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YL  172 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYL  172 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEe
Confidence            9999999999999999999999999999999986544556899999999998

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 4e-35
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 4e-35
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 4e-35
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 3e-33
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 6e-13
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 89/134 (66%), Gaps = 5/134 (3%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 7   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
           +GT+ A              A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   
Sbjct: 67  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 189 KNGGQRMATVLMYL 202
           ++GGQR+ T+LMYL
Sbjct: 127 EHGGQRVVTMLMYL 140
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 3e-58
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 5e-54
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  181 bits (461), Expect = 3e-58
 Identities = 76/132 (57%), Positives = 96/132 (72%), Gaps = 2/132 (1%)

Query: 73  AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSG 132
               V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS+G
Sbjct: 9   WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTG 68

Query: 133 TFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KN 190
           T+ A+G D +I  IEKR+A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   ++
Sbjct: 69  TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128

Query: 191 GGQRMATVLMYL 202
           GGQR+ T+LMYL
Sbjct: 129 GGQRVVTMLMYL 140
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 99.98
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 99.96
3dkq_A 243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.62
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.41
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 95.88
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.67
3tht_A 345 Alkylated DNA repair protein ALKB homolog 8; struc 95.05
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 94.74
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 83.21
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=99.98  E-value=5.2e-32  Score=226.20  Aligned_cols=132  Identities=58%  Similarity=0.993  Sum_probs=121.4

Q ss_pred             CCCCceEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHH
Q 028907           71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  150 (202)
Q Consensus        71 ~~~~~~vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri  150 (202)
                      .+++.|+|+||++|+|++||||||++||++|+++++++++++++.++.+|....+++|+|+++|++...++++++|++||
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri   86 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV   86 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999887667777889999999999987789999999999


Q ss_pred             HhhhCCCCCCCccceeeecCCCccccccccCCCcccCC--CCCCCceEEEEecC
Q 028907          151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYL  202 (202)
Q Consensus       151 ~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~--~~~g~R~aTvLiYL  202 (202)
                      .+++|+|...+|.+||+||++||+|++|+|++....+.  ..+++|++|+|+||
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YL  140 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYL  140 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEEC
T ss_pred             HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEe
Confidence            99999999999999999999999999999998754322  45689999999998
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 95.31
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 89.97
d2fcta1 308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 81.65
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.06  Score=41.15  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CceEEEeecCCC----EEEEcCCCCHHHHHHHHHHhcC--CCccceeeeCCCCCccc----------cceeccceeeec-
Q 028907           74 EQWVEVISWEPR----AFVYHNFLSKEECEYLINLATP--HMRKSTVVDSDTGKSKD----------SRVRTSSGTFLA-  136 (202)
Q Consensus        74 ~~~vE~LS~~P~----I~l~~nfLs~~Ec~~Li~~a~~--~L~~s~v~~~~~g~~~~----------s~~RtS~~~wL~-  136 (202)
                      ......|+..|.    +.++.|||+++|.+.|.+....  .++.......  |+...          ..++-+...... 
T Consensus         5 ~~~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~--g~~~~~pR~~~~~~d~~y~y~~~~~~~~   82 (210)
T d2iuwa1           5 REGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIRE--DITYQQPRLTAWYGELPYTYSRITMEPN   82 (210)
T ss_dssp             SSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESS--SCEEECSSEEEEEECCCTTSCHHHHCCB
T ss_pred             ccCceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceecc--CcccceeeeeEEecCcCccccccccccC
Confidence            345667888874    8999999999999999886532  2222222110  11111          111111111111 


Q ss_pred             CCCcHHHHHHHHHHHhhhCCCCCCCccceeeecCC-CccccccccC
Q 028907          137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEA-GQKYEPHFDY  181 (202)
Q Consensus       137 ~~~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~-Gg~Y~~H~D~  181 (202)
                      ..-.+.+..+.+++...++.+.   ....+.+|.. |+.=.+|.|.
T Consensus        83 ~~~~~~l~~l~~~~~~~~~~~~---~~~~ln~Y~~~~~~I~~H~D~  125 (210)
T d2iuwa1          83 PHWHPVLRTLKNRIEENTGHTF---NSLLCNLYRNEKDSVDWHSDD  125 (210)
T ss_dssp             SSCCHHHHHHHHHHHHHHSCCC---CEEEEEEECSTTCCEEEECCC
T ss_pred             CCCcHHHHHHHHhhhhhcCccc---hhhhhhccccCCCccccCcCC
Confidence            1124788889999999888764   3456677755 5678999995
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure