Citrus Sinensis ID: 028909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccEEEEEEEEEccccccEEEEEEEEcccccccccEEEEEcEEcccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccEEEEEEEcccccEEEEEEEEccccccccccccccEEEEEEEEccccccEEEEEEEEccccEEEcEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MPKASPILRKGQKALQDLNLLKILNSEIThelssnrfqdnqsgtlgdfkveydapqshdvVLRTKFESGEEVAVSALlgpetfvresrfpreVLMKVCLTKPVLCSILQFDCRvtekhiegsdfdirnayylqsstclgrplyrgpmfssldPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Flexible Loop (DISEMBL)
mpkaspilrkgqKALQDLNLLKILNSEITHelssnrfqdnQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAvsallgpetfvresrfprEVLMKVCLTKPVLCSILQFDCRVTEKhiegsdfdirnAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Low Complexity Region (SEG)
MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Disordered region (IsUnstruct)
****************DLNLLKILNSEI******************DFKVEYDA**SHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL*******
Disordered Region (DISOPRED)
*********************KILNSEI***********************YDAPQSHDVVLRTKFESGEEVAVSA*****************LMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYY******LGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMV***
Disordered Region (DISEMBL)
MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Disordered Region (DISPRO)
*************ALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
P40513	266	Mitochondrial acidic prot	yes	no	0.267	0.203	0.407	6e-08
O94675	269	Mitochondrial acidic prot	yes	no	0.356	0.267	0.341	5e-06
Q8W487	250	Uncharacterized protein A	no	no	0.806	0.652	0.235	0.0005

>sp|P40513|MAM33_YEAST Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
           +Y GP FS+LD +LQ +L+ YL +RG+ E L +++  +   KE ++Y++WL+K+
Sbjct: 208 VYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKM 261

Not known. Binds to the sorting sequence of cytochrome b2.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 124 FDIRNAYYLQSSTCLG----------RPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLT 173
           FDI N Y+ +    L           R  Y GP F  LDP+LQ     YL  R I E L+
Sbjct: 183 FDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKELDPELQDLFHSYLEERKIDESLS 242

Query: 174 NYLLLHLHKKEQDQYVNWLQKL 195
           ++++     KE  +Y+NWL+ +
Sbjct: 243 SFIVSFGLTKELKEYINWLESV 264

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 32/195 (16%)

Query: 20  LLKILNSEITHELSSNRFQDNQSGTLGDF--KVEYDAPQSHDVVLRTKFESGEEVAVSAL 77
           L+++++SEI   L S+    ++  T G F  ++E D P + +V L T+  +GE + V   
Sbjct: 65  LIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIE-DKPGNQNVTL-TRDYNGEHIKVVVS 122

Query: 78  L----------------GPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEG 121
           +                GP     ES  P    + V +TK    + L+F C      I  
Sbjct: 123 MPSLVSDENDDDDDDDEGPSN---ESSIP----LVVTVTKKSGLT-LEFSCMAFPDEIAI 174

Query: 122 SDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLH 181
               +++       +   +    GP F  LD  L+    ++L  RG+    TN+L  ++ 
Sbjct: 175 DALSVKHP----GDSLEDQLANEGPDFEDLDENLKKTFYKFLEIRGVKASTTNFLHEYMT 230

Query: 182 KKEQDQYVNWLQKLE 196
           +K   +Y  WL+ ++
Sbjct: 231 RKVNREYFLWLKNVK 245

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255582708	200	conserved hypothetical protein [Ricinus	0.985	0.995	0.633	8e-67
225441898	204	PREDICTED: uncharacterized protein LOC10	0.995	0.985	0.618	9e-64
449475781	208	PREDICTED: mitochondrial acidic protein	0.995	0.966	0.603	1e-63
449444362	208	PREDICTED: mitochondrial acidic protein	0.995	0.966	0.603	2e-63
255637654	229	unknown [Glycine max]	0.940	0.829	0.607	3e-61
317106702	202	JHL06B08.3 [Jatropha curcas]	0.965	0.965	0.599	1e-59
388507844	197	unknown [Lotus japonicus]	0.945	0.969	0.596	1e-59
363808230	232	uncharacterized protein LOC100784023 [Gl	0.940	0.818	0.598	8e-59
255642229	230	unknown [Glycine max]	0.940	0.826	0.588	4e-58
357509645	213	Mitochondrial acidic protein mam33 [Medi	0.995	0.943	0.564	1e-53

>gi|255582708|ref|XP_002532132.1| conserved hypothetical protein [Ricinus communis] gi|223528191|gb|EEF30252.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 159/199 (79%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV 60
           MP+ + ILR+G KAL+D++LLK+L SEI HE+SS  FQ+N+SG LGDF V+YD+ +S D+
Sbjct: 1   MPRPTQILRRGCKALEDVHLLKVLQSEIKHEISSPPFQENRSGYLGDFVVDYDSSESQDI 60

Query: 61  VLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIE 120
            LRT  ESGEEVAVSAL+GP++   +  F  +V+MKVC+ KP L S+LQFDC V+EK I 
Sbjct: 61  FLRTNCESGEEVAVSALVGPKSIREDGSFRGDVMMKVCVRKPGLNSMLQFDCGVSEKLIT 120

Query: 121 GSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHL 180
           GS F+I NAYYLQS+T      YRGP+FS+LDP LQ ALKEYLVA+GI E LTN+LLLHL
Sbjct: 121 GSHFNILNAYYLQSTTSPSPSAYRGPLFSTLDPHLQAALKEYLVAKGISESLTNFLLLHL 180

Query: 181 HKKEQDQYVNWLQKLESMV 199
           ++KEQ QYVNWLQKLES++
Sbjct: 181 NQKEQGQYVNWLQKLESLM 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441898|ref|XP_002284412.1| PREDICTED: uncharacterized protein LOC100246864 isoform 1 [Vitis vinifera] gi|359481872|ref|XP_003632683.1| PREDICTED: uncharacterized protein LOC100246864 isoform 2 [Vitis vinifera] gi|297739624|emb|CBI29806.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/202 (61%), Positives = 152/202 (75%), Gaps = 1/202 (0%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV 60
           M + + ILR+ QKALQDL+LLK+L SEI HE S +RFQ+ Q G  GDF V++D+P S DV
Sbjct: 1   MRRVNGILRQSQKALQDLDLLKVLQSEIRHEQSHDRFQNYQGGNPGDFVVDWDSPASQDV 60

Query: 61  VLRTKFESGEEVAVSALLGPETFVRE-SRFPREVLMKVCLTKPVLCSILQFDCRVTEKHI 119
           VLR K ESGEEVAVSALL P TF  E   FPR++LMKVC+ KP L  +LQFDC V  K  
Sbjct: 61  VLRRKCESGEEVAVSALLSPITFRNEEGSFPRDLLMKVCVKKPGLSPVLQFDCGVFSKDH 120

Query: 120 EGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLH 179
           E  +F+I +AYY+ S  CL    YRGP FSSLDP LQ ALKEYL+ARGIG+ LTN+L++H
Sbjct: 121 ERLEFNIHSAYYIPSPACLNPSAYRGPSFSSLDPNLQDALKEYLLARGIGDDLTNFLVIH 180

Query: 180 LHKKEQDQYVNWLQKLESMVAK 201
           LH+KEQ QY +WL KLE+M+AK
Sbjct: 181 LHRKEQTQYTSWLHKLEAMMAK 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475781|ref|XP_004154549.1| PREDICTED: mitochondrial acidic protein mam33-like [Cucumis sativus]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 153/202 (75%), Gaps = 1/202 (0%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQD-NQSGTLGDFKVEYDAPQSHD 59
           M +A+ I RK +KA  DLNLLKIL SEITHELSS   Q+   + T  DF VE+D+ +S D
Sbjct: 1   MARATQIFRKARKAFHDLNLLKILQSEITHELSSTPCQNYENNSTSSDFTVEHDSLKSQD 60

Query: 60  VVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHI 119
           VVLR K +SGEEV +SALLGP     E  FPR++LMK+C++KP + S+LQFDC V+E   
Sbjct: 61  VVLRRKLDSGEEVVISALLGPLRLGYEGAFPRDILMKICVSKPGVSSLLQFDCGVSENGH 120

Query: 120 EGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLH 179
            GS F++ NAYYL SS CLG  +YRGP FSSLDP+LQ ALKE+L++RG+ E LTN+LL+H
Sbjct: 121 GGSPFELYNAYYLPSSDCLGPSVYRGPSFSSLDPRLQDALKEFLISRGVEERLTNFLLIH 180

Query: 180 LHKKEQDQYVNWLQKLESMVAK 201
           LHKKEQ QY+NWLQ +ES +AK
Sbjct: 181 LHKKEQGQYLNWLQNVESSIAK 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444362|ref|XP_004139944.1| PREDICTED: mitochondrial acidic protein mam33-like [Cucumis sativus]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 153/202 (75%), Gaps = 1/202 (0%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQD-NQSGTLGDFKVEYDAPQSHD 59
           M +A+ I RK +KA  DLNLLKIL SEITHELSS   Q+   + T  DF VE+D+ +S D
Sbjct: 1   MARATQIFRKARKAFHDLNLLKILQSEITHELSSTPCQNYENNSTSSDFTVEHDSLKSQD 60

Query: 60  VVLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHI 119
           VVLR K +SGEEV +SALLGP     E  FPR++LMK+C++KP + S+LQFDC V+E   
Sbjct: 61  VVLRRKLDSGEEVVISALLGPLRLGYEGAFPRDILMKICVSKPGVSSLLQFDCGVSENGH 120

Query: 120 EGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLH 179
            GS F++ NAYYL SS CLG  +YRGP FSSLDP+LQ ALKE+L++RG+ E LTN+LL+H
Sbjct: 121 GGSPFELYNAYYLPSSDCLGPSVYRGPSFSSLDPRLQDALKEFLISRGVEERLTNFLLIH 180

Query: 180 LHKKEQDQYVNWLQKLESMVAK 201
           LHKKEQ QY+NWLQ +ES +AK
Sbjct: 181 LHKKEQGQYLNWLQDVESSIAK 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637654|gb|ACU19151.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 146/191 (76%), Gaps = 1/191 (0%)

Query: 12  QKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEE 71
           QK LQDL LLK   SEI  EL+SN FQ+ QSG+LGDF V+  +P S DVVLR KF+SGEE
Sbjct: 27  QKHLQDLELLKCFKSEIQFELASNHFQNAQSGSLGDFVVDPTSPNSKDVVLRRKFDSGEE 86

Query: 72  VAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYY 131
           VA+SA+LGP  +V++  FPR+  MKVC+ KP L  ++QFDC V E+  +GSDFDI NAYY
Sbjct: 87  VAISAILGPPNYVKDLIFPRDAFMKVCVKKPALSFMVQFDCDVYEETDKGSDFDIYNAYY 146

Query: 132 LQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNW 191
           L+SSTC    +YRGP+F +LD +LQ A KEYL+A+GIG  LTN+L  +LHK+EQ+QYVNW
Sbjct: 147 LKSSTCFSTSIYRGPLFRTLDDELQDAFKEYLIAKGIGVSLTNFLFHYLHKREQEQYVNW 206

Query: 192 LQKLE-SMVAK 201
           L+K E + VAK
Sbjct: 207 LKKGEAAFVAK 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106702|dbj|BAJ53202.1| JHL06B08.3 [Jatropha curcas]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 148/202 (73%), Gaps = 7/202 (3%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV 60
           M +A+ IL K QKAL DL+L K+L SEI HELSS   Q N++G+LGDF +++D+  S D+
Sbjct: 1   MFRATQILLKCQKALGDLDLRKVLRSEIKHELSSPHVQGNRNGSLGDFVMDWDSSNSKDI 60

Query: 61  VLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIE 120
           VLR K ESGEEVAV+ LL P        + RE LMKV + K  L SILQFDC V EK   
Sbjct: 61  VLRRKCESGEEVAVTVLLDP-------CYAREFLMKVFVKKAGLNSILQFDCEVYEKGAS 113

Query: 121 GSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHL 180
           GS FDI NAYYLQ++TC G   YRGP+FS LD QLQ ALKEYLVA+G+ E LTN++LLHL
Sbjct: 114 GSGFDIHNAYYLQTTTCPGPSAYRGPLFSDLDTQLQNALKEYLVAKGVSEELTNFILLHL 173

Query: 181 HKKEQDQYVNWLQKLESMVAKS 202
            +KE++QYVNWLQK+ES+V K 
Sbjct: 174 QEKEKNQYVNWLQKVESLVVKG 195

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507844|gb|AFK41988.1| unknown [Lotus japonicus]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 147/191 (76%)

Query: 8   LRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFE 67
           L+KG +A+QDL LLK+L SEI  ELS NRFQ+ ++G+LG+F V+ D+ ++ DV+LR K +
Sbjct: 7   LKKGFQAVQDLELLKLLRSEIHFELSENRFQNAETGSLGEFVVDSDSRRTKDVILRRKCD 66

Query: 68  SGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIR 127
           SGEEVAVSA+LGP  F +E  FPR+V MKVC+ KP L SILQFDC V E+ + GS FDI 
Sbjct: 67  SGEEVAVSAILGPPYFDKELVFPRDVFMKVCVKKPSLSSILQFDCEVYEETLHGSAFDID 126

Query: 128 NAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQ 187
           N Y+L SSTCL   +YRGP+FS LD  LQ A KEYL+A+GI   LTN+LL +LH +EQ+Q
Sbjct: 127 NVYFLNSSTCLSSSVYRGPLFSELDINLQDAFKEYLIAKGIRLGLTNFLLHYLHTREQEQ 186

Query: 188 YVNWLQKLESM 198
           YVNWL+KL+ +
Sbjct: 187 YVNWLKKLKHL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808230|ref|NP_001242490.1| uncharacterized protein LOC100784023 [Glycine max] gi|255631434|gb|ACU16084.1| unknown [Glycine max]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 148/192 (77%), Gaps = 2/192 (1%)

Query: 12  QKALQDLNLLKILNSEITHELSSNRFQDNQS-GTLGDFKVEYDAPQSHDVVLRTKFESGE 70
           QK LQDL LLK   SEI  EL+SN FQ+ +S  +LGDF V+ D+P S DVVLR KF+SGE
Sbjct: 27  QKHLQDLELLKCFKSEIQFELASNHFQNARSDSSLGDFVVDPDSPSSKDVVLRRKFDSGE 86

Query: 71  EVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAY 130
           E+A+SA+LGP  +V++  FPR+  +KVC+ KP L S+LQFDC V E+  +GSDFDI NAY
Sbjct: 87  EIAISAILGPPNYVKDLVFPRDAFVKVCVKKPALSSMLQFDCDVYEETDKGSDFDIYNAY 146

Query: 131 YLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVN 190
           YL+S TCL   +YRGP+F +LD +LQ ALKEYL+A+GIG  LTN+LL +LHK+E +QY+N
Sbjct: 147 YLRSPTCLSPSIYRGPLFRTLDDELQDALKEYLIAKGIGVSLTNFLLHYLHKREHEQYMN 206

Query: 191 WLQKLE-SMVAK 201
           WL+K E + VAK
Sbjct: 207 WLKKGEAAFVAK 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642229|gb|ACU21379.1| unknown [Glycine max]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 147/192 (76%), Gaps = 2/192 (1%)

Query: 12  QKALQDLNLLKILNSEITHELSSNRFQDNQS-GTLGDFKVEYDAPQSHDVVLRTKFESGE 70
           QK LQDL LLK   SEI  EL+SN FQ+ +S  +LGDF V+ ++P S DVVLR KF+SGE
Sbjct: 27  QKHLQDLELLKCFKSEIQFELASNHFQNARSDSSLGDFVVDPNSPSSKDVVLRRKFDSGE 86

Query: 71  EVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAY 130
           E+A+SA+LGP  +V++  FPR+  +KVC+ KP L S+LQFDC V E+  +GSDFDI NAY
Sbjct: 87  EIAISAILGPPNYVKDLVFPRDAFVKVCVKKPALSSMLQFDCDVYEETDKGSDFDISNAY 146

Query: 131 YLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVN 190
           YL+S TCL   +YRGP+F +LD + Q ALKEYL+A+GIG  LTN+LL +LHK+E +QY+N
Sbjct: 147 YLRSPTCLSPSIYRGPLFRTLDDEFQDALKEYLIAKGIGVSLTNFLLHYLHKREHEQYMN 206

Query: 191 WLQKLE-SMVAK 201
           WL+K E + VAK
Sbjct: 207 WLKKGEAAFVAK 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509645|ref|XP_003625111.1| Mitochondrial acidic protein mam33 [Medicago truncatula] gi|355500126|gb|AES81329.1| Mitochondrial acidic protein mam33 [Medicago truncatula] gi|388521343|gb|AFK48733.1| unknown [Medicago truncatula]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV 60
           M +A  + RKG KALQDL LLK+L SEI  ELSSN FQ  Q+G+LG+F V+ D+P S DV
Sbjct: 1   MARARAV-RKGLKALQDLELLKLLKSEINFELSSNHFQKAQTGSLGEFVVDSDSPNSKDV 59

Query: 61  VLRTKFESGEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIE 120
           +LR K  SGEE+A+SA+LGP  + ++  F R+V MKVC+ KP L SILQFDC+V +K+ E
Sbjct: 60  ILRRKCNSGEEIALSAILGPPNYEKDLIFVRDVFMKVCIKKPTLSSILQFDCKVYQKNDE 119

Query: 121 GSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHL 180
            S+FDI NA YL S T L   +YRGP+FS L+  LQ A KEYL+ +GIG  LTN+LL +L
Sbjct: 120 SSEFDINNACYLGSPTSLSSSIYRGPLFSELNNNLQKAFKEYLIDKGIGGSLTNFLLHYL 179

Query: 181 HKKEQDQYVNWLQKLESMVAKS 202
           H +EQ QY NWL+K E+ ++K+
Sbjct: 180 HTREQKQYANWLKKGEAFLSKN 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2062667	220	AT2G41600 "AT2G41600" [Arabido	1.0	0.918	0.519	1.2e-51
TAIR|locus:2116597	234	AT4G31930 "AT4G31930" [Arabido	0.861	0.743	0.291	2.4e-12
TAIR|locus:2025772	190	AT1G80720 "AT1G80720" [Arabido	0.886	0.942	0.266	2.8e-11
ASPGD|ASPL0000037267	303	suAprgA1 [Emericella nidulans	0.292	0.194	0.440	1.1e-08
GENEDB_PFALCIPARUM|PF14_0329	252	PF14_0329 "hypothetical protei	0.881	0.706	0.266	2.4e-08
UNIPROTKB|Q8ILB6	252	PF14_0329 "Putative uncharacte	0.881	0.706	0.266	2.4e-08
TAIR|locus:2036184	242	AT1G15870 "AT1G15870" [Arabido	0.876	0.731	0.245	8.3e-08
SGD|S000001332	266	MAM33 "Michochondrial matrix p	0.272	0.206	0.4	1.7e-07
CGD|CAL0003133	264	MAM33 [Candida albicans (taxid	0.262	0.200	0.415	9.2e-06
UNIPROTKB|Q5A0A8	264	MAM33 "Putative uncharacterize	0.262	0.200	0.415	9.2e-06

TAIR|locus:2062667 AT2G41600 "AT2G41600" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 106/204 (51%), Positives = 147/204 (72%)

Query:     1 MPKASPILRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV 60
             M K +P+L++G KA+++ +LLKIL SEI HE+S  RFQ  ++G+LGDFK+++D+P+S D+
Sbjct:     1 MRKLNPLLKRGLKAIENGDLLKILQSEIRHEISHPRFQGVETGSLGDFKLDWDSPESQDI 60

Query:    61 VLRTKFESGEEVAVSALLGPETFVRESR--FPREVLMKVCLTKPVLCSILQFDCRVTEKH 118
             VL+ +F+SGE+V VSALL PE    E    FPRE   KVC+ KP L SILQF CRV E  
Sbjct:    61 VLKRQFDSGEKVVVSALLQPEPIELEDDLVFPREAHAKVCIKKPGLSSILQFHCRVYESG 120

Query:   119 IEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLL 178
                S FDI +AY+++S        Y    FS +DP+L  AL++YL+++G+ E LTN+LL 
Sbjct:   121 SGSSHFDIESAYFIRSFVSAPSSTYGDHFFSQVDPKLHSALEQYLISKGVSEGLTNFLLC 180

Query:   179 HLHKKEQDQYVNWLQKLESMVAKS 202
             HL+KKEQDQYVNWL++LES ++ S
Sbjct:   181 HLNKKEQDQYVNWLRRLESTMSHS 204

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116597 AT4G31930 "AT4G31930" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 56/192 (29%), Positives = 94/192 (48%)

Query:    19 NLLKILNSEITHELSSNRFQDNQSGT-LGDFKVEYDAPQSHDVVLRTKFESGEEVAVSAL 77
             N+L+I+ +EI  E  S+    +Q  T    F VE D P    +V++ KF   E++ + A 
Sbjct:    52 NILRIIRNEI--EYQSDYAPPHQPATEFKSFSVE-DCPGEQCIVMKGKFGEDEDIKMEAT 108

Query:    78 L--G----PETFVRESRFP-R-EVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNA 129
             +  G    P   +  S    R  + + V ++K      ++F C V    IE     IR  
Sbjct:   109 MFDGFMNVPRAGLDASGHDVRLHISLLVDISKVDGSEEIEFLCSVWPNRIE-----IRKL 163

Query:   130 YYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYV 189
             Y L+ +   G+P Y GP F +L    Q A++E+L  RGI   L  +L  ++  K++ + +
Sbjct:   164 YKLRRNKITGQP-YMGPNFGNLKYDFQTAIREFLRVRGIDAELCFFLHEYMMNKDRIELI 222

Query:   190 NWLQKLESMVAK 201
              WL+KL S +++
Sbjct:   223 QWLRKLNSFISQ 234

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025772 AT1G80720 "AT1G80720" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 52/195 (26%), Positives = 90/195 (46%)

Query:    12 QKALQDLNLLKILNSEITHELS-SNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGE 70
             QK+    N+L+++ +EI +EL  S   Q   S   G F V+ + P    + L+  F   E
Sbjct:     2 QKSAFQGNILRLIRNEIEYELDHSPPLQPPNS--FGPFTVD-ERPGEQWISLKRNFGDKE 58

Query:    71 EVAVSALLGPETFV--RESRFPREVLMKVC----LTKPVLCSILQFDCRVTEKHIEGSDF 124
             ++ + A +   +    + ++   E ++ +     ++K      L+  C      IE S  
Sbjct:    59 DIKIEATMFDRSVPTSKSTKTEPEYILHITFIVNISKAGATEALEIMCSAWPDTIEISKL 118

Query:   125 DIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKE 184
              IR       S+      Y GP F  LD QLQ AL ++L  RGI + L  +L  ++  K 
Sbjct:   119 CIRRGINTSPSS------YGGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKG 172

Query:   185 QDQYVNWLQKLESMV 199
             + +YV W++ ++S V
Sbjct:   173 KAEYVRWMESVKSYV 187

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000037267 suAprgA1 [Emericella nidulans (taxid:162425)]

 Score = 131 (51.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query:   142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200
             LY GP F +LD  LQ  L+ YL  RGI   L N +  ++  KEQ +YV WL+ + + VA
Sbjct:   244 LYAGPPFENLDEDLQTYLERYLEERGINAELANMIPDYIQVKEQKEYVRWLENVRNFVA 302

GO:0042318 "penicillin biosynthetic process" evidence=IGI;IMP

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0009060 "aerobic respiration" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0329 PF14_0329 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 49/184 (26%), Positives = 83/184 (45%)

Query:    20 LLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV-VLRTKFESGEEVAVS-AL 77
             L +++ +E+ HE S+    DN    L     +++  Q  DV ++ TK   G ++ +   L
Sbjct:    69 LSEVVKAEVQHEKSNYEAPDNIKKFLQTSGWKFEE-QEGDVNMVLTKNVDGMKIIIDFQL 127

Query:    78 LGPETFVRESRFPREVL-MKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNA-YYLQSS 135
             + P     E+    E+    V + KP     + F C  T ++ E   + I N  YY    
Sbjct:   128 VSPFQAEGENEAQAEMTDFSVTVEKPNQNGGITFYC-TTLQNDEKFRYMIGNVKYYKNEE 186

Query:   136 TCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
                    Y GP F  LD  LQ +L E+L   G+   L +++      KEQ +Y++WLQ +
Sbjct:   187 GKNSVSAYNGPEFEDLDDSLQTSLDEWLANLGVDSELCDFIDSCSIDKEQREYMSWLQNI 246

Query:   196 ESMV 199
              + +
Sbjct:   247 SNFI 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILB6 PF14_0329 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 49/184 (26%), Positives = 83/184 (45%)

Query:    20 LLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDV-VLRTKFESGEEVAVS-AL 77
             L +++ +E+ HE S+    DN    L     +++  Q  DV ++ TK   G ++ +   L
Sbjct:    69 LSEVVKAEVQHEKSNYEAPDNIKKFLQTSGWKFEE-QEGDVNMVLTKNVDGMKIIIDFQL 127

Query:    78 LGPETFVRESRFPREVL-MKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNA-YYLQSS 135
             + P     E+    E+    V + KP     + F C  T ++ E   + I N  YY    
Sbjct:   128 VSPFQAEGENEAQAEMTDFSVTVEKPNQNGGITFYC-TTLQNDEKFRYMIGNVKYYKNEE 186

Query:   136 TCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
                    Y GP F  LD  LQ +L E+L   G+   L +++      KEQ +Y++WLQ +
Sbjct:   187 GKNSVSAYNGPEFEDLDDSLQTSLDEWLANLGVDSELCDFIDSCSIDKEQREYMSWLQNI 246

Query:   196 ESMV 199
              + +
Sbjct:   247 SNFI 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036184 AT1G15870 "AT1G15870" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 45/183 (24%), Positives = 86/183 (46%)

Query:    19 NLLKILNSEITHELS-SNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSAL 77
             N+L+++  EI  EL  S   Q  +S   G F V+ + P    + LR KF   E++ + A 
Sbjct:    61 NILRLIRLEIQSELDHSPILQPEES--FGPFTVD-ERPGEQWISLRRKFGEKEDIKIEAT 117

Query:    78 LGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIR-NAYYLQSST 136
             +   + V  S+        V L    + +I + D    E         I+   ++++ S+
Sbjct:   118 MFDGS-VPSSKSTTSDPEDVQLHITFIVNISKGDGETLEIMCSAWPDTIQITKFFVRKSS 176

Query:   137 CLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLE 196
                   Y GP F  ++ +LQ ++  +L  RGI + L  +L  ++  K++ +Y+ W++ ++
Sbjct:   177 QNSPNAYIGPEFQEMEDELQDSVYRFLEERGISDDLAEFLHQYMKNKDKAEYIRWMETVK 236

Query:   197 SMV 199
             S V
Sbjct:   237 SYV 239

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

SGD|S000001332 MAM33 "Michochondrial matrix protein involved in oxidative phosphorylation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 135 (52.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 22/55 (40%), Positives = 40/55 (72%)

Query:   142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLE 196
             +Y GP FS+LD +LQ +L+ YL +RG+ E L +++  +   KE ++Y++WL+K++
Sbjct:   208 VYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMK 262

GO:0009060 "aerobic respiration" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

CGD|CAL0003133 MAM33 [Candida albicans (taxid:5476)]

 Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query:   143 YRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
             Y+GP F  LD  LQV  + YLV++GI E L ++++ +   KE+ +Y NWL  +
Sbjct:   207 YQGPKFGLLDESLQVEFENYLVSKGIDEQLADFIIGYSDVKEETEYRNWLNSV 259

GO:0003674 "molecular_function" evidence=ND

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

UNIPROTKB|Q5A0A8 MAM33 "Putative uncharacterized protein MAM33" [Candida albicans SC5314 (taxid:237561)]

 Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query:   143 YRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
             Y+GP F  LD  LQV  + YLV++GI E L ++++ +   KE+ +Y NWL  +
Sbjct:   207 YQGPKFGLLDESLQVEFENYLVSKGIDEQLADFIIGYSDVKEETEYRNWLNSV 259

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam02330	202	pfam02330, MAM33, Mitochondrial glycoprotein	2e-09

>gnl|CDD|216977 pfam02330, MAM33, Mitochondrial glycoprotein

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 38/208 (18%)

Query: 24  LNSEITHELSSNRFQDNQSGTL--GDFKVEYDAPQSHDVVLRTKFESGEEVAVS------ 75
           L+SEI  E       DN + +L    F +E D P   +V L T+   GE++ V+      
Sbjct: 1   LSSEIKEEKEQQLSLDNLNKSLPPMSFDIE-DTPGDAEVKL-TRKVGGEKIHVTFNVNQS 58

Query: 76  ---ALLGPETF--------VRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSD- 123
                 G                 F  EV        P     L  +       IE  D 
Sbjct: 59  VPPPYDGEMDESQEQEPEQTSTPNFVVEVPNNDNGNFP----PLVLEISKPGVSIEFEDE 114

Query: 124 -----FDIRNAYYLQSSTCLGRPL-------YRGPMFSSLDPQLQVALKEYLVARGIGEH 171
                F +   Y+  S   L +         Y GP F +LDP+LQ     YL  RG+   
Sbjct: 115 AQSDIFSVEEVYFYPSGDSLNQSAEAEWRDTYYGPSFKNLDPELQDLFHRYLEERGVDAT 174

Query: 172 LTNYLLLHLHKKEQDQYVNWLQKLESMV 199
              +L+ +   KE  +Y+ WL+K++  V
Sbjct: 175 FAKFLVAYSTAKEHQEYITWLEKVKKFV 202

This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG2536	263	consensus MAM33, mitochondrial matrix glycoprotein	100.0
PF02330	204	MAM33: Mitochondrial glycoprotein; InterPro: IPR00	100.0
KOG4024	266	consensus Complement component 1, Q subcomponent b	99.98
TIGR01881	127	cas_Cmr5 CRISPR-associated protein, Cmr5 family. C	80.64

>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]

Probab=100.00  E-value=2.5e-45  Score=307.88  Aligned_cols=181  Identities=27%  Similarity=0.391  Sum_probs=149.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC----CCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeC-----C--C
Q 028909           13 KALQDLNLLKILNSEITHELSSNRFQD----NQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLG-----P--E   81 (202)
Q Consensus        13 ~~~~d~~L~~~L~~EI~~E~~~~~~~~----~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~-----~--~   81 (202)
                      +++.++.|++++.+||+++++..++..    ..+....+|.++ |.||.++|+|+|+|+ ||+|+|++.|.     +  +
T Consensus        56 rss~t~~~~r~i~~EI~s~~~~~~~~~~~~~~~~~~~~pf~ie-d~PG~q~V~L~r~~~-GE~i~V~v~v~~~~~~~~~e  133 (263)
T KOG2536|consen   56 RSSFTQNLLRVILSEIKSEKKHDPPHQVLEEEIPLSKFPFEIE-DRPGEQWVVLTRKFE-GETIKVEVDVTQLVTDEPEE  133 (263)
T ss_pred             hcccccchHHHHHHHHHHhhhcCCchhhhhhccccCCCCccee-cCCCceEEEEEeecC-CceEEEEEeeehhccCCcch
Confidence            456689999999999999988764322    123344679996 999999999999998 89999999862     1  1


Q ss_pred             CCC------CCC---------CCCcceeeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCCC-CCCCCccC
Q 028909           82 TFV------RES---------RFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTC-LGRPLYRG  145 (202)
Q Consensus        82 ~~~------ed~---------~~~~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~~-~~~~~Y~G  145 (202)
                      +.+      +++         .....+.+.|+|+|++ |.+|+|.|++|||+     |.|+++++.++... ...-+|.|
T Consensus       134 ~~de~e~~~~~~~~~~~~~~~~~~~~iplvV~vsK~~-~~sLef~cta~pD~-----i~Idslsv~~~~d~~~~~l~Y~G  207 (263)
T KOG2536|consen  134 DEDETEEEDEDEDQEDDDPLSDNISNIPLVVTVSKGD-GVSLEFLCTAFPDE-----IVIDSLSVRPPIDASEDQLAYEG  207 (263)
T ss_pred             hccccccccccccccccccCCCcceeeEEEEEEecCC-CceEEEEeecCCCc-----eEEeeeEecCCCCccchhhhccC
Confidence            110      110         1122478999999966 68999999999875     89999999988753 33369999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028909          146 PMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAK  201 (202)
Q Consensus       146 P~f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~~  201 (202)
                      |.|++|||+||++||.|||+|||+++|+.||++||.+|+++||++||++||+||++
T Consensus       208 P~F~eLDe~Lqd~fh~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK~Fv~~  263 (263)
T KOG2536|consen  208 PSFEELDEELQDSFHRFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVKSFVEQ  263 (263)
T ss_pred             CChhHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999974

>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q

Probab=100.00  E-value=6e-42  Score=283.77  Aligned_cols=167  Identities=33%  Similarity=0.527  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCCCCCC--CCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeC----CC---CCC-----CC-C-
Q 028909           24 LNSEITHELSSNRFQDNQS--GTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLG----PE---TFV-----RE-S-   87 (202)
Q Consensus        24 L~~EI~~E~~~~~~~~~~~--~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~----~~---~~~-----ed-~-   87 (202)
                      |++||++|++++...+...  -+..+|.+. +.+|+++|+|+|+|+ +|+|+|.|+++    ++   +.+     ++ + 
T Consensus         1 L~~EI~~E~~~~~~~~~~~~~l~~~~f~i~-d~~g~~~V~L~r~~~-~E~I~V~f~v~~~~~~~~~~~~~~~~~~e~~~~   78 (204)
T PF02330_consen    1 LKSEIKYEKENYESPDSLKEFLPPSPFEIE-DKPGGSEVTLTREFG-GEKIRVTFNVNDSVDPPFDEDEDEEEGEEEEEE   78 (204)
T ss_dssp             HHHHHHHHHHHCT-HHHHCCHHHHTTTCEE-EECCTTEEEEEEEET-TEEEEEEEECCCH--------------------
T ss_pred             ChHHHHHHHHcccccHHHHhhCCCCCCEEE-EcCCCcEEEEEEecC-CcEEEEEEECCccCCCCCCccccchhccccccc
Confidence            7899999998774100111  134668996 899999999999998 69999999864    11   100     00 0 


Q ss_pred             --C-------CC-----cceeeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCCC-------CCCCCccCC
Q 028909           88 --R-------FP-----REVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTC-------LGRPLYRGP  146 (202)
Q Consensus        88 --~-------~~-----~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~~-------~~~~~Y~GP  146 (202)
                        .       .+     ..+.++|+++|++  +.|.|.|+++++     .|.|++|+++++...       .....|.||
T Consensus        79 ~~~~~~fe~~~~~~~~~~~~~~~v~~~k~~--~~l~f~~~~~~d-----~~~I~~v~~~~~~~~~~~~~~~e~~~~y~gp  151 (204)
T PF02330_consen   79 EISEPDFEVEIPKEDEVSFPFFVVVISKPG--DGLEFDCSAQDD-----EFSIDNVSFYPDGDSTKDSAEAEWEDAYYGP  151 (204)
T ss_dssp             ------CEEECCCCCCCEEEEEEEEEECTC--EEEEEEEECCTT-----EEEEEEEEEESSHHHH--SHHHHHHCSS-EC
T ss_pred             ccccccchhcccccccccceeEEEEEEcCC--CceEEeEeccCc-----eEEEEEEEEecCccccccccchhccccccCC
Confidence              0       11     1235788999987  459999998654     499999999987542       114689999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028909          147 MFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMV  199 (202)
Q Consensus       147 ~f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv  199 (202)
                      .|++||++||++|++||++||||++||+||++||++|||++|++||++|++||
T Consensus       152 ~f~~LDe~Lq~~~~~yLeeRGId~~la~fl~~y~~~kEq~eYi~wL~~l~~Fv  204 (204)
T PF02330_consen  152 DFDELDENLQDAFMNYLEERGIDEELANFLHDYSTDKEQREYIRWLKNLKKFV  204 (204)
T ss_dssp             EGGGSBHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999997

; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.

>KOG4024 consensus Complement component 1, Q subcomponent binding protein/mRNA splicing factor SF2, subunit P32 [Defense mechanisms]

Probab=99.98  E-value=9.4e-31  Score=214.35  Aligned_cols=182  Identities=21%  Similarity=0.293  Sum_probs=144.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeC----CC-CCCCCC
Q 028909           13 KALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLG----PE-TFVRES   87 (202)
Q Consensus        13 ~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~----~~-~~~ed~   87 (202)
                      |+..++.|+++|..||+.|.++.... ..|+.+.||.++   ..+.+|.|+|+.+ +|+|.|+||++    ++ ++++++
T Consensus        66 ht~~~~alv~fl~~Ei~~erk~qkgk-t~Pkt~~Gf~v~---l~gaev~Ltkk~~-~Eki~V~FNvNhsvd~~e~~e~eP  140 (266)
T KOG4024|consen   66 HTELQQALVRFLEAEIQLERKNQKGK-TAPKTFAGFQVT---LKGAEVRLTKKNG-SEKILVVFNVNHSVDMDEGFEDEP  140 (266)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCC-ccCccccceEEE---ecCceeEEeeccC-CceEEEEEecCCccCcccCCccCc
Confidence            89999999999999999999887653 467789999997   3457999999999 79999999985    22 222221


Q ss_pred             --------CCCcceeeEEEEEcCCCCceEEEEeeecccccCCCce--EEeeEEEecC---CC-CCCCCCccCCCCCCCCH
Q 028909           88 --------RFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDF--DIRNAYYLQS---ST-CLGRPLYRGPMFSSLDP  153 (202)
Q Consensus        88 --------~~~~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~--~I~~v~~~~~---~~-~~~~~~Y~GP~f~~LDe  153 (202)
                              +..+.++|+|.|.|++  ++|+|+|++.+++.++++|  .|..++....   +. ......|.- .-+.||+
T Consensus       141 sq~~~~~pe~tS~P~F~VeiiKG~--~~L~f~c~~~~~e~QedEy~~~~~~~~~a~f~~~gn~~~~d~vYa~-~gd~lD~  217 (266)
T KOG4024|consen  141 SQAVAPVPEATSMPPFTVEIIKGD--QRLCFHCELVPVEDQEDEYDFRVEEFYVAPFAKNGNEDVPDEVYAS-SGDYLDP  217 (266)
T ss_pred             cccCCCCcccccCCCeEEEEEeCC--eeEEEEeecCCcccCcccccceeeeEEeeecccCCCccCCcceeec-cCcccCH
Confidence                    2223578999999976  8999999999877766633  3333332222   21 123456763 5689999


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028909          154 QLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS  202 (202)
Q Consensus       154 ~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~~~  202 (202)
                      .|++.|+.||++||||++||.-|.+|++..||.+||.+|++||+|+++.
T Consensus       218 ~LyDlL~~~LeerG~d~~Fa~~Lv~laTa~EH~~YIglLeklkkF~~~q  266 (266)
T KOG4024|consen  218 DLYDLLFVYLEERGLDARFAKTLVALATAYEHSQYIGLLEKLKKFISKQ  266 (266)
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999873

>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family

Probab=80.64  E-value=6.3  Score=30.36  Aligned_cols=43  Identities=21%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCCHH---HHHHHH-----HHH-HHHHHHHHHHHHHHHH
Q 028909          154 QLQVALKEYLVARGIGEH---LTNYLL-----LHL-HKKEQDQYVNWLQKLE  196 (202)
Q Consensus       154 ~Lq~~~~~yLeeRGId~e---la~fl~-----~y~-~~KE~~eYi~WL~~vk  196 (202)
                      -|...+..||.++|+-+.   +...|.     .|+ ...|=-+|+.||+++.
T Consensus        70 ~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfA  121 (127)
T TIGR01881        70 KYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLA  121 (127)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999986554   333322     233 4557778999998864

CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3qv0_A	227	Crystal Structure Of Saccharomyces Cerevisiae Mam33		6e-09

>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33 Length = 227

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)
Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
           +Y GP FS+LD +LQ +L+ YL +RG+ E L +++  +   KE ++Y++WL+K+
Sbjct: 169 VYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKM 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	3e-32
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	2e-31
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	6e-27
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	2e-26

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} Length = 182

 Score =  113 bits (285), Expect = 3e-32
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 25/197 (12%)

Query: 14  ALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVA 73
           A+ D  L +    E+  E         +      + ++   P      +R      EE+ 
Sbjct: 1   AVSDQRLSEATLRELEDERQ-RAGLPEKPEIPEGWTID-RKPGVTHFTMRKSHG-DEEII 57

Query: 74  VSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQ 133
           +       +         E+   + +        L F   V +      +F I N  +  
Sbjct: 58  LQLTGEDRS-------NEEITRTLDVLVVNGGKALVFGMSVED-----GEFVINNVCFRH 105

Query: 134 SSTCLG----------RPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKK 183
                             LY GP  + L+  L  +   YL ARG+ + L N++       
Sbjct: 106 DGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWS 165

Query: 184 EQDQYVNWLQKLESMVA 200
           EQ  Y  WL  +   V+
Sbjct: 166 EQADYEEWLSSINKFVS 182

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1 Length = 203

 Score =  112 bits (281), Expect = 2e-31
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 24/199 (12%)

Query: 12  QKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEE 71
           +++  D  L      E+  E+     +  Q      ++V    P +    L   FE GE+
Sbjct: 19  RRSASDAALADATRRELEEEMG-RSDKPEQPTPPAGWQVV-RKPGTCTFDLTKSFE-GED 75

Query: 72  VAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYY 131
           + V          ++S       + V +T+    + +Q D  + E      +  + N  +
Sbjct: 76  LVVRYSTN-----QDSDKANSHNIFVYITQKNGQT-MQADLSIEE-----GELVLNNIRF 124

Query: 132 LQSST----------CLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLH 181
              +                LY GP+   LD  L   +  YL  RG+ E L  +++L+  
Sbjct: 125 YDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSF 184

Query: 182 KKEQDQYVNWLQKLESMVA 200
             EQ  Y  WL  +    +
Sbjct: 185 WAEQQDYEAWLTTMNKFAS 203

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A Length = 209

 Score =  100 bits (251), Expect = 6e-27
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 17  DLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVS- 75
           D   +  L+ EI  E    +         G +++E       +  L  K   GE++ V+ 
Sbjct: 6   DKAFVDFLSDEIKEERKIQK-HKTLPKMSGGWELEL---NGTEAKLVRKVA-GEKITVTF 60

Query: 76  --ALLGPETFVRESRFPRE-------------VLMKVCLTK-PVLCSILQFDCRVTEKHI 119
                 P TF  E    +                  V + K       L  DC   E  +
Sbjct: 61  NINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEV 120

Query: 120 EGSD------FDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLT 173
              D      F IR   +  +     +         SLD  L   L ++L  RG+     
Sbjct: 121 GQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFA 180

Query: 174 NYLLLHLHKKEQDQYVNWLQKLESMVA 200
           + L+      E  +Y+ +L+ L+S V 
Sbjct: 181 DELVELSTALEHQEYITFLEDLKSFVK 207

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae} Length = 227

 Score =  100 bits (249), Expect = 2e-26
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 41/221 (18%)

Query: 16  QDLNLLKILNSEITHELSSNRFQDNQSG-----TLGDFKVEYDAPQSHDVVLRTKFESGE 70
           +   +  IL SE+  E  +     +            F +  + P  ++  +  + ESGE
Sbjct: 10  ETQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLV-ETPGKNEAEIVRRTESGE 68

Query: 71  EVAVSALL---------------------GPETFVRESRFPREVLMKVCLTKPVLC-SIL 108
            V V   +                     G      ++       + V ++K       +
Sbjct: 69  TVHVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAV 128

Query: 109 QFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRP----------LYRGPMFSSLDPQLQVA 158
            F+  +     +   F + +A    S                 +Y GP FS+LD +LQ +
Sbjct: 129 SFELLMNL---QEGSFYVDSATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQES 185

Query: 159 LKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMV 199
           L+ YL +RG+ E L +++  +   KE ++Y++WL+K++   
Sbjct: 186 LEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3jv1_A	182	P22 protein; MAM33 family, hydrolase; 2.00A {Trypa	100.0
1yqf_A	203	Hypothetical protein LMAJ011689; structural genomi	100.0
1p32_A	209	Mitochondrial matrix protein, SF2P32; 2.25A {Homo	100.0
3qv0_A	227	Mitochondrial acidic protein MAM33; A BOWL like st	100.0

>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0

Probab=100.00  E-value=7.5e-50  Score=324.93  Aligned_cols=172  Identities=20%  Similarity=0.338  Sum_probs=149.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCCCCCCCCCCCCcce
Q 028909           14 ALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREV   93 (202)
Q Consensus        14 ~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~~~~~ed~~~~~~~   93 (202)
                      +.+|++|+++|++||++|+++...+ ..|+.+.+|+|. |+||+++|+|+|+|| +|+|+|+|++.+++   |+ . ..+
T Consensus         1 ~~~d~~L~~~L~~EI~~E~~~~~~~-~~p~~~~~f~i~-d~pG~~~v~L~r~~~-~E~I~V~f~~~~ed---d~-~-~~~   72 (182)
T 3jv1_A            1 AVSDQRLSEATLRELEDERQRAGLP-EKPEIPEGWTID-RKPGVTHFTMRKSHG-DEEIILQLTGEDRS---NE-E-ITR   72 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSTTCC-CCCCCCTTCEEE-CCTTCCSCEEEEEET-TEEEEEEEEEECSS---CS-S-CCE
T ss_pred             CcchHHHHHHHHHHHHHHHhccccc-CCCCCCCCCEEE-ecCCCcEEEEEEEeC-CcEEEEEEecCCcc---cc-c-cCc
Confidence            4689999999999999999986432 244466789996 999999999999999 59999999998642   21 1 258


Q ss_pred             eeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCC----------CCCCCCccCCCCCCCCHHHHHHHHHHH
Q 028909           94 LMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSST----------CLGRPLYRGPMFSSLDPQLQVALKEYL  163 (202)
Q Consensus        94 ~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~----------~~~~~~Y~GP~f~~LDe~Lq~~~~~yL  163 (202)
                      +|+|+|+| + +++|.|+|++++     +.|.|++|+++++..          +.+...|.||+|++||++||++|++||
T Consensus        73 ~~~V~I~K-~-~~~L~f~c~~~~-----~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yL  145 (182)
T 3jv1_A           73 TLDVLVVN-G-GKALVFGMSVED-----GEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYL  145 (182)
T ss_dssp             EEEEEEEE-T-TEEEEEEEEEET-----TEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCHHHHHHHHHHH
T ss_pred             cEEEEEEE-C-CcEEEEEEEecC-----CEEEEEEEEEeccchhhccccccccccccccccCCCccccCHHHHHHHHHHH
Confidence            89999999 4 589999999975     469999999998643          234579999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909          164 VARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA  200 (202)
Q Consensus       164 eeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~  200 (202)
                      ++||||++||+||++||++|||+||++||++|++||+
T Consensus       146 eeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs  182 (182)
T 3jv1_A          146 SARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS  182 (182)
T ss_dssp             HTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999985

>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1

Probab=100.00  E-value=2.3e-49  Score=327.09  Aligned_cols=177  Identities=21%  Similarity=0.356  Sum_probs=148.4

Q ss_pred             hcccchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCCCCCCCCCCC
Q 028909           10 KGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRF   89 (202)
Q Consensus        10 r~~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~~~~~ed~~~   89 (202)
                      ...++++|.+|+++|++||++|+++...+ ..+..+++|+|. |.||+++|+|+|+|| +|+|+|+|++.+...+ |+  
T Consensus        17 ~~~~~~~d~~L~~~L~~EI~~E~~~~~~~-~~~~~p~~F~i~-d~pG~~~v~L~R~~~-~E~I~V~f~~~~~~~~-de--   90 (203)
T 1yqf_A           17 VPRRSASDAALADATRRELEEEMGRSDKP-EQPTPPAGWQVV-RKPGTCTFDLTKSFE-GEDLVVRYSTNQDSDK-AN--   90 (203)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCSSCC-CCCCCCTTCEEE-ECTTSSEEEEEEEET-TEEEEEEEESCCCSSC-SS--
T ss_pred             ccccCcchHHHHHHHHHHHHHHHhcccCC-CCCCCCCCcEEE-ecCCCcEEEEEEecC-CeEEEEEEEcCCCCCC-CC--
Confidence            34478999999999999999999876321 123345699996 999999999999999 6999999998754322 22  


Q ss_pred             CcceeeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCCC----------CCCCCccCCCCCCCCHHHHHHH
Q 028909           90 PREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTC----------LGRPLYRGPMFSSLDPQLQVAL  159 (202)
Q Consensus        90 ~~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~~----------~~~~~Y~GP~f~~LDe~Lq~~~  159 (202)
                      |.  +|+|+|+|++ |++|.|+|++++     +.|.|++|+++++...          .+...|.||.|++||++||++|
T Consensus        91 ~s--~~~V~I~K~~-~~~L~f~C~~~~-----~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LDe~Lq~~l  162 (203)
T 1yqf_A           91 SH--NIFVYITQKN-GQTMQADLSIEE-----GELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCV  162 (203)
T ss_dssp             CE--EEEEEEECTT-SCEEEEEEEEET-----TEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHHHHHHH
T ss_pred             cc--eEEEEEEeCC-CCEEEEEEEecC-----CEEEEEEEEEeccccccccccccccccccccccCCCcccCCHHHHHHH
Confidence            42  8999999998 689999999875     4599999999976421          2346899999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909          160 KEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA  200 (202)
Q Consensus       160 ~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~  200 (202)
                      ++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus       163 ~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~  203 (203)
T 1yqf_A          163 MTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  203 (203)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999985

>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A

Probab=100.00  E-value=1.3e-48  Score=323.89  Aligned_cols=185  Identities=23%  Similarity=0.323  Sum_probs=153.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeC---CCCC--C--
Q 028909           12 QKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLG---PETF--V--   84 (202)
Q Consensus        12 ~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~---~~~~--~--   84 (202)
                      .|+.+|.+|+++|++||++|+++..+. ..|..+++|+++ + +| ++|+|+|+|+ +|+|+|+|+|+   |+.+  +  
T Consensus         1 ~~~~~d~~L~~~L~~EI~~E~~~~~~~-~~p~~~~~F~v~-~-~g-~~v~L~r~~~-~E~I~V~f~v~~~~~~~~~~~~e   75 (209)
T 1p32_A            1 MHTDGDKAFVDFLSDEIKEERKIQKHK-TLPKMSGGWELE-L-NG-TEAKLVRKVA-GEKITVTFNINNSIPPTFDGEEE   75 (209)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSTTS-CCCCCTTCCEEE-E-ET-TEEEEEEEET-TEEEEEEEECTTCCC--------
T ss_pred             CCchHHHHHHHHHHHHHHHHHhccccc-CCCCCCCCcEEE-E-CC-CEEEEEEecC-CcEEEEEEEccCCCCcccccccc
Confidence            488999999999999999999876432 345567899997 5 46 8999999999 69999999874   2211  0  


Q ss_pred             ---------CCCCCCcceeeEEEEEcC-CCCceEEEEeeeccccc------CCCceEEeeEEEecCCCC-CCCCCccCCC
Q 028909           85 ---------RESRFPREVLMKVCLTKP-VLCSILQFDCRVTEKHI------EGSDFDIRNAYYLQSSTC-LGRPLYRGPM  147 (202)
Q Consensus        85 ---------ed~~~~~~~~~~V~I~K~-~~~~~L~f~C~~~~~~~------~~~~~~I~~v~~~~~~~~-~~~~~Y~GP~  147 (202)
                               ++...+..++|+|+|+|+ +++++|.|+|++++++.      .++.|.|++|++++++.. .....|.| .
T Consensus        76 ~~~~~~~~ee~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e~~~~~~~Y~g-~  154 (209)
T 1p32_A           76 PSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTL-N  154 (209)
T ss_dssp             -------------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTTSCEE-E
T ss_pred             cccccccccccccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcccccccccccc-c
Confidence                     011234457999999998 34689999999998752      356799999999986532 35678999 8


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028909          148 FSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS  202 (202)
Q Consensus       148 f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~~~  202 (202)
                      |.+||++||++|++||++||||++||+||++||++|||+||++||++|++||+++
T Consensus       155 f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~~  209 (209)
T 1p32_A          155 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             STTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999874

>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-44  Score=301.51  Aligned_cols=182  Identities=23%  Similarity=0.374  Sum_probs=138.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCCCCC------CCCceEeecCCCCceE-EEEeecCCCceEEEEEeeC-----C
Q 028909           13 KALQDLNLLKILNSEITHELSSNRFQDNQSGT------LGDFKVEYDAPQSHDV-VLRTKFESGEEVAVSALLG-----P   80 (202)
Q Consensus        13 ~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~------~~~F~i~~d~~g~~~v-~L~r~~~~~E~I~V~~~~~-----~   80 (202)
                      |-+....|+.+|++||++|+++.... ..|+.      -++|+|. |+||.+.| .|+|+|| +|+|+|.|++.     |
T Consensus         7 ~~~~~~~l~~~L~~Ei~~E~~~~~~e-~~p~~~~~Fl~~~~f~i~-d~~G~~~V~llkr~~g-~EkI~V~F~i~d~~~~p   83 (227)
T 3qv0_A            7 HHQETQRVGDILQSELKIEKETLPES-TSLDSFNDFLNKYKFSLV-ETPGKNEAEIVRRTES-GETVHVFFDVAQIANLP   83 (227)
T ss_dssp             ---CHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTTCEEE-CCTTCSEEEEEEECTT-SCEEEEEEEHHHHC---
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccccc-cCchHHHHHHhcCCcEEE-ecCCCceEEEEEeecC-CcEEEEEEEccccccCC
Confidence            45667899999999999999876432 12222      2679995 99999999 8899999 69999999862     1


Q ss_pred             C-C-C------------CCC-CCCCc-ceeeEEEEEcCCCC-ceEEEEeeecccccCCCceEEeeEEEecCCC-------
Q 028909           81 E-T-F------------VRE-SRFPR-EVLMKVCLTKPVLC-SILQFDCRVTEKHIEGSDFDIRNAYYLQSST-------  136 (202)
Q Consensus        81 ~-~-~------------~ed-~~~~~-~~~~~V~I~K~~~~-~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~-------  136 (202)
                      . + .            +|| ++.+. .++|+|+|+|+++. ++|.|+|++.   +.+|.|.|++|++++++.       
T Consensus        84 ~e~~~~e~~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~---~~eg~f~Id~V~~~~d~~~a~~~s~  160 (227)
T 3qv0_A           84 YNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMN---LQEGSFYVDSATPYPSVDAALNQSA  160 (227)
T ss_dssp             ---------------------------CEEEEEEEEC---CCCEEEEEEEEE---TTTTEEEEEEEEEESSHHHHHCCSH
T ss_pred             cccccccccccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEee---cCCCcEEEEEEEEecchHhhhcccc
Confidence            1 0 0            011 11222 37899999999743 7999999953   245789999999998753       


Q ss_pred             ---CCCCCCccCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909          137 ---CLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA  200 (202)
Q Consensus       137 ---~~~~~~Y~GP~f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~  200 (202)
                         +.+...|.||.|++||++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus       161 e~~~~r~~~Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~  227 (227)
T 3qv0_A          161 EAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH  227 (227)
T ss_dssp             HHHHHHHHSCCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               2345689999999999999999999999999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1yqfa1	182	d.25.1.1 (A:14-195) Hypothetical protein Lmaj01168	4e-31
d1p32a_	209	d.25.1.1 (A:) Acidic mitochondrial matrix protein	3e-30

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

 Score =  109 bits (275), Expect = 4e-31
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 14/189 (7%)

Query: 17  DLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSA 76
           D  L      E+  E+     +  Q      ++V    P +    L   FE GE++ V  
Sbjct: 3   DAALADATRRELEEEMGR-SDKPEQPTPPAGWQVV-RKPGTCTFDLTKSFE-GEDLVVRY 59

Query: 77  LLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSST 136
               ++            + V +T+      +Q D  + E  +  ++    +   L   T
Sbjct: 60  STNQDSDKAN-----SHNIFVYITQKN-GQTMQADLSIEEGELVLNNIRFYDEAALAKDT 113

Query: 137 CLG-----RPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNW 191
                     LY GP+   LD  L   +  YL  RG+ E L  +++L+    EQ  Y  W
Sbjct: 114 GAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAW 173

Query: 192 LQKLESMVA 200
           L  +    +
Sbjct: 174 LTTMNKFAS 182

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-30
 Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 28/206 (13%)

Query: 17  DLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSA 76
           D   +  L+ EI  E    +         G +++E +     +  L  K   GE++ V+ 
Sbjct: 6   DKAFVDFLSDEIKEERK-IQKHKTLPKMSGGWELELN---GTEAKLVRKVA-GEKITVTF 60

Query: 77  LL----------------GPETFVRESRFPREVLMKVCLTKPVLC-SILQFDCRVTEKHI 119
            +                G +   +E          V + K       L  DC   E  +
Sbjct: 61  NINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEV 120

Query: 120 ------EGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLT 173
                 E   F IR   +  +     +         SLD  L   L ++L  RG+     
Sbjct: 121 GQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFA 180

Query: 174 NYLLLHLHKKEQDQYVNWLQKLESMV 199
           + L+      E  +Y+ +L+ L+S V
Sbjct: 181 DELVELSTALEHQEYITFLEDLKSFV 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1yqfa1	182	Hypothetical protein Lmaj011689 {Leishmania major	100.0
d1p32a_	209	Acidic mitochondrial matrix protein p32 {Human (Ho	100.0

>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Hypothetical protein Lmaj011689
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=4.3e-49  Score=318.49  Aligned_cols=172  Identities=22%  Similarity=0.355  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCCCCCCCCCCCCccee
Q 028909           15 LQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREVL   94 (202)
Q Consensus        15 ~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~~~~~ed~~~~~~~~   94 (202)
                      ++|..|+++|++||++|++..... ..|.++.||+|+ |+||+++|+|+|+++ +|+|+|+|++++...++     ..++
T Consensus         1 asd~~L~~~l~~Ei~~E~~~~~~~-~~p~~~~gf~i~-d~~g~~~v~L~r~~~-~E~I~V~~~~~~~~~~~-----~~~~   72 (182)
T d1yqfa1           1 ASDAALADATRRELEEEMGRSDKP-EQPTPPAGWQVV-RKPGTCTFDLTKSFE-GEDLVVRYSTNQDSDKA-----NSHN   72 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSCC-CCCCCCTTCEEE-ECTTSSEEEEEEEET-TEEEEEEEESCCCSSCS-----SCEE
T ss_pred             CchHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCEEE-EcCCceEEEEEEecC-CeEEEEEEECCCCCCcc-----CCCC
Confidence            579999999999999999877543 355577899996 999999999999999 69999999987643211     1478


Q ss_pred             eEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCCC----------CCCCCccCCCCCCCCHHHHHHHHHHHH
Q 028909           95 MKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTC----------LGRPLYRGPMFSSLDPQLQVALKEYLV  164 (202)
Q Consensus        95 ~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~~----------~~~~~Y~GP~f~~LDe~Lq~~~~~yLe  164 (202)
                      |+|+|+|++ +++|.|+|++++     +.|.|++|+++++...          .+...|.||.|++||++||++|++||+
T Consensus        73 ~~V~i~K~~-~~~L~f~c~~~~-----~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yLe  146 (182)
T d1yqfa1          73 IFVYITQKN-GQTMQADLSIEE-----GELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLE  146 (182)
T ss_dssp             EEEEEECTT-SCEEEEEEEEET-----TEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHHHHHHHHHHHH
T ss_pred             eEEEEEECC-CCEEEEEEEecC-----CceEEEEEEeeCchhhccccccccccccccccCCCCccccCHHHHHHHHHHHH
Confidence            999999998 579999999975     4599999999987531          233569999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909          165 ARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA  200 (202)
Q Consensus       165 eRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~  200 (202)
                      +||||++||+||++||++|||++|++||++|++||+
T Consensus       147 eRGId~~la~fl~~~~~~kE~~eYi~WL~~l~~Fvs  182 (182)
T d1yqfa1         147 KRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS  182 (182)
T ss_dssp             HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999985

>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Mitochondrial glycoprotein MAM33-like
superfamily: Mitochondrial glycoprotein MAM33-like
family: Mitochondrial glycoprotein MAM33-like
domain: Acidic mitochondrial matrix protein p32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-48  Score=321.34  Aligned_cols=186  Identities=22%  Similarity=0.287  Sum_probs=152.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCC---CCC-----
Q 028909           12 QKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGP---ETF-----   83 (202)
Q Consensus        12 ~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~---~~~-----   83 (202)
                      +||.+|.+|+++|++||++|+++.... ..|+.+++|+++ +.+|  +|+|+|+|| +|+|+|+|+++.   .+.     
T Consensus         1 ~~t~~d~~L~~~L~~EI~~E~~~~~~~-~~p~~~~~F~v~-~~~~--ev~L~R~~~-~E~I~V~f~v~~~~~~~~~~~~~   75 (209)
T d1p32a_           1 MHTDGDKAFVDFLSDEIKEERKIQKHK-TLPKMSGGWELE-LNGT--EAKLVRKVA-GEKITVTFNINNSIPPTFDGEEE   75 (209)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSTTS-CCCCCTTCCEEE-EETT--EEEEEEEET-TEEEEEEEECTTCCC--------
T ss_pred             CCchhHHHHHHHHHHHHHHHHhccccc-CCCCCCCCcEEE-ecCC--EEEEEEecC-CceEEEEEEcCCCCCCCcCcccc
Confidence            489999999999999999999876543 466678999997 6554  699999999 699999998741   100     


Q ss_pred             --------CCCCCCCcceeeEEEEEcCC-CCceEEEEeeeccccc------CCCceEEeeEEEecCCCCCCCCCccCCCC
Q 028909           84 --------VRESRFPREVLMKVCLTKPV-LCSILQFDCRVTEKHI------EGSDFDIRNAYYLQSSTCLGRPLYRGPMF  148 (202)
Q Consensus        84 --------~ed~~~~~~~~~~V~I~K~~-~~~~L~f~C~~~~~~~------~~~~~~I~~v~~~~~~~~~~~~~Y~GP~f  148 (202)
                              ++++..+..++|+|+|+|++ ++++|.|.|++..++.      ..+.|.|++++++..+.......|.||.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~V~Itk~~~~~~~L~f~c~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~gp~f  155 (209)
T d1p32a_          76 PSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNT  155 (209)
T ss_dssp             -------------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTTSCEEES
T ss_pred             ccccccccccccccccCCceEEEEEecCCCCceEEEEeecccccccccccccccceEEeEEeeeccccccccccccCCCh
Confidence                    01123344678999999964 3589999999765432      23469999999998776555567889999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028909          149 SSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS  202 (202)
Q Consensus       149 ~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~~~  202 (202)
                      .+||++||++|++||++||||++||.||++||++|||+||++||++||+||+.+
T Consensus       156 ~~LDe~Lq~~~~~YLeeRGI~~~la~fi~~y~~~KEq~EYi~WL~~lk~Fv~~~  209 (209)
T d1p32a_         156 DSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ  209 (209)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999875