Citrus Sinensis ID: 028910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MQSAAYKPRFPSFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEEEEEEcccccccccccEEEEEEEEccEEEEEHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEEEEEEEcccccccccHHHHccHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHEEEEEEEEEEEEccccccccccccEEEEEEEccccEEEHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcHHHcccHHHHHHcccccccccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mqsaaykprfpsftcsepallggkmvtfrFHQYQvvgralptekdehpkiyRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFeknptkiknYGIWLRyqsrtgyhNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspcIQIIRTATIpaklckrestkqfhnskikfplvfkkvrpptrklkttykasrpnlfm
Flexible Loop (DISEMBL)
mqsaaykprfpsftcsePALLGGKMVTFRFHQYQVVgralptekdehpkIYRMklwatnevrakSKFWYFLRKLKKvkksngqmlaineifeknptkiknyGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspcIQIIRTAtipaklckrestkqfhnskikfplvfkkvrpptrklkttykasrpnlfm
Low Complexity Region (SEG)
MQSAAYKPRFPSFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Disordered region (IsUnstruct)
***********SFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKV********************
Disordered Region (DISOPRED)
************************MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Disordered Region (DISEMBL)
********RFPSFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Disordered Region (DISPRO)
*********FPSFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSAAYKPRFPSFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9ATF5	178	60S ribosomal protein L18	N/A	no	0.881	1.0	0.932	4e-96
P51418	178	60S ribosomal protein L18	yes	no	0.881	1.0	0.921	6e-95
Q9LUD4	178	60S ribosomal protein L18	no	no	0.881	1.0	0.910	2e-93
Q943F3	178	60S ribosomal protein L18	yes	no	0.881	1.0	0.893	2e-91
Q54MK8	171	60S ribosomal protein L18	yes	no	0.821	0.970	0.561	2e-52
Q02543	176	60S ribosomal protein L18	yes	no	0.826	0.948	0.523	4e-48
Q3T003	176	60S ribosomal protein L18	yes	no	0.826	0.948	0.523	4e-48
P62718	176	60S ribosomal protein L18	yes	no	0.826	0.948	0.523	5e-48
P62717	176	60S ribosomal protein L18	yes	no	0.826	0.948	0.523	5e-48
P41093	177	60S ribosomal protein L18	yes	no	0.782	0.892	0.537	1e-47

>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1

 Score =  350 bits (898), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 166/178 (93%), Positives = 172/178 (96%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

Castanea sativa (taxid: 21020)

>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2

 Score =  346 bits (888), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 164/178 (92%), Positives = 172/178 (96%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           M  FRFHQYQVVGRALPTEKD  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1

 Score =  341 bits (874), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/178 (91%), Positives = 168/178 (94%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           M  FRFHQYQVVGRALPTE DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQM
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1

 Score =  334 bits (857), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/178 (89%), Positives = 167/178 (93%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           M  FRFHQYQVVGR LPT  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 124/171 (72%), Gaps = 5/171 (2%)

Query: 31  HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 90
           H++QVVGR +PTE+D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct: 4   HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63

Query: 91  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 150
           FE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II
Sbjct: 64  FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123

Query: 151 RTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
               I A L +R +TKQFH+SKIKFPL  +       K K+T+ A+RPN F
Sbjct: 124 DIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169

Dictyostelium discoideum (taxid: 44689)

>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)

Query: 32  QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
           +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
              I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Homo sapiens (taxid: 9606)

>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)

Query: 32  QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
           +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
              I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Bos taurus (taxid: 9913)

>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)

Query: 32  QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
           +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
              I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Rattus norvegicus (taxid: 10116)

>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)

Query: 32  QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
           +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
              I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Mus musculus (taxid: 10090)

>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 119/158 (75%)

Query: 32  QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
           +Y+VVGR LP+EK+    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++
Sbjct: 9   EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVY 68

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQII+
Sbjct: 69  ETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIK 128

Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKL 189
             +IPA   +R   KQFH+SKIKFPLV +      RKL
Sbjct: 129 VDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
449519146	752	PREDICTED: protein ASPARTIC PROTEASE IN	0.886	0.238	0.955	2e-98
118482586	178	unknown [Populus trichocarpa] gi|1184855	0.881	1.0	0.971	4e-98
224062663	178	predicted protein [Populus trichocarpa]	0.881	1.0	0.966	5e-98
449459356	178	PREDICTED: 60S ribosomal protein L18a-li	0.881	1.0	0.949	2e-97
224078998	178	predicted protein [Populus trichocarpa]	0.881	1.0	0.966	4e-97
224116756	178	predicted protein [Populus trichocarpa]	0.881	1.0	0.960	4e-97
118484993	178	unknown [Populus trichocarpa]	0.881	1.0	0.960	4e-97
351727627	178	uncharacterized protein LOC100306365 [Gl	0.881	1.0	0.960	6e-97
225463466	178	PREDICTED: 60S ribosomal protein L18a [V	0.881	1.0	0.949	8e-97
147843375	178	hypothetical protein VITISV_011977 [Viti	0.881	1.0	0.949	1e-96

>gi|449519146|ref|XP_004166596.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/179 (95%), Positives = 177/179 (98%)

Query: 24  KMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ 83
           KMVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ
Sbjct: 574 KMVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ 633

Query: 84  MLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 143
           +LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR
Sbjct: 634 ILAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 693

Query: 144 SPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
            PCIQII+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 694 CPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482586|gb|ABK93213.1| unknown [Populus trichocarpa] gi|118485561|gb|ABK94632.1| unknown [Populus trichocarpa]

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/178 (97%), Positives = 176/178 (98%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALPTE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062663|ref|XP_002300869.1| predicted protein [Populus trichocarpa] gi|118481342|gb|ABK92614.1| unknown [Populus trichocarpa] gi|222842595|gb|EEE80142.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 172/178 (96%), Positives = 176/178 (98%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MV+FRFHQYQVVGRALPTE DEHPKIYRMKLWATNEVR+KSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRSKSKFWYFLRKLKKVKKSNGQI 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459356|ref|XP_004147412.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus] gi|449515807|ref|XP_004164939.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 177/178 (99%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MV+FRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078998|ref|XP_002305712.1| predicted protein [Populus trichocarpa] gi|224079000|ref|XP_002305713.1| predicted protein [Populus trichocarpa] gi|224079007|ref|XP_002305715.1| predicted protein [Populus trichocarpa] gi|118481545|gb|ABK92715.1| unknown [Populus trichocarpa] gi|222848676|gb|EEE86223.1| predicted protein [Populus trichocarpa] gi|222848677|gb|EEE86224.1| predicted protein [Populus trichocarpa] gi|222848679|gb|EEE86226.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 172/178 (96%), Positives = 175/178 (98%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALPT  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTGSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116756|ref|XP_002317384.1| predicted protein [Populus trichocarpa] gi|118483631|gb|ABK93710.1| unknown [Populus trichocarpa] gi|222860449|gb|EEE97996.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALPT+ DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTQSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484993|gb|ABK94361.1| unknown [Populus trichocarpa]

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MV+FRFHQYQVVGRALPTE DEHPKIYRMKLWATNEVR+KSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRSKSKFWYFLRKLKKVKKSNGQI 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKR STKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRGSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727627|ref|NP_001237679.1| uncharacterized protein LOC100306365 [Glycine max] gi|255628313|gb|ACU14501.1| unknown [Glycine max]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 174/178 (97%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALPTE D HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MVTFRFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYNEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463466|ref|XP_002276260.1| PREDICTED: 60S ribosomal protein L18a [Vitis vinifera] gi|147769189|emb|CAN71860.1| hypothetical protein VITISV_019859 [Vitis vinifera] gi|297740674|emb|CBI30856.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 174/178 (97%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYAEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRES+KQFHNSKIKFPL F+KVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843375|emb|CAN82658.1| hypothetical protein VITISV_011977 [Vitis vinifera]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 174/178 (97%)

Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYAEMASRHRVRS 120

Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TATIPAKLCKRES+KQFHNSKIKFPL F+KVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2040914	178	AT2G34480 [Arabidopsis thalian	0.881	1.0	0.921	1.6e-88
TAIR|locus:2089516	178	AT3G14600 [Arabidopsis thalian	0.866	0.983	0.92	2.9e-87
TAIR|locus:1005716700	178	AT1G29965 [Arabidopsis thalian	0.881	1.0	0.893	6.9e-86
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.851	0.551	0.912	4.9e-85
DICTYBASE|DDB_G0285881	171	rpl18a "S60 ribosomal protein	0.821	0.970	0.561	2.3e-48
UNIPROTKB|F1NPD3	182	RPL18A "60S ribosomal protein	0.896	0.994	0.494	8.8e-47
UNIPROTKB|Q3T003	176	RPL18A "60S ribosomal protein	0.826	0.948	0.523	3e-46
UNIPROTKB|E2RL34	176	RPL18A "60S ribosomal protein	0.826	0.948	0.523	3e-46
UNIPROTKB|Q02543	176	RPL18A "60S ribosomal protein	0.826	0.948	0.523	3e-46
UNIPROTKB|F1S935	224	RPL18A "Uncharacterized protei	0.826	0.745	0.523	3e-46

TAIR|locus:2040914 AT2G34480 [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 164/178 (92%), Positives = 172/178 (96%)

Query:    25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
             M  FRFHQYQVVGRALPTEKD  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct:     1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query:    85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
             LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct:    61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query:   145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
             PCIQII+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct:   121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2089516 AT3G14600 [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 161/175 (92%), Positives = 167/175 (95%)

Query:    28 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 87
             FRFHQYQVVGRALPTE DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAI
Sbjct:     4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query:    88 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 147
             NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct:    64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query:   148 QIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
             QII+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct:   124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716700 AT1G29965 [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 159/178 (89%), Positives = 168/178 (94%)

Query:    25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
             M   R HQYQVVGRALPTEKDE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQM
Sbjct:     1 MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query:    85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
             LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct:    61 LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query:   145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
             PCIQII+TAT+PA LCKRESTKQFHNSKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct:   121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 157/172 (91%), Positives = 166/172 (96%)

Query:    31 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 90
             HQYQVVGRALPTEKDE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQMLAINEI
Sbjct:   141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query:    91 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 150
             FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII
Sbjct:   201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query:   151 RTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
             +TAT+PA LCKRESTKQFHNSKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct:   261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

DICTYBASE|DDB_G0285881 rpl18a "S60 ribosomal protein L18a" [Dictyostelium discoideum (taxid:44689)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 96/171 (56%), Positives = 124/171 (72%)

Query:    31 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 90
             H++QVVGR +PTE+D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct:     4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63

Query:    91 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 150
             FE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II
Sbjct:    64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123

Query:   151 RTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
                 I A L +R +TKQFH+SKIKFPL  +       K K+T+ A+RPN F
Sbjct:   124 DIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NPD3 RPL18A "60S ribosomal protein L18a" [Gallus gallus (taxid:9031)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 91/184 (49%), Positives = 127/184 (69%)

Query:    18 PALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV 77
             P L     V+ +  +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+
Sbjct:     1 PRLTPLSFVSLQLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKM 60

Query:    78 KKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMA 137
             KKS+G+++   +++EK P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M 
Sbjct:    61 KKSSGEIVYCGQVYEKTPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMG 120

Query:   138 SRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASR 197
             +RHR R+  IQI++   I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   R
Sbjct:   121 ARHRARAHSIQIMKVEQIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKR 177

Query:   198 PNLF 201
             PN F
Sbjct:   178 PNTF 181

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q3T003 RPL18A "60S ribosomal protein L18a" [Bos taurus (taxid:9913)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 89/170 (52%), Positives = 123/170 (72%)

Query:    32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
             +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
                I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RL34 RPL18A "60S ribosomal protein L18a" [Canis lupus familiaris (taxid:9615)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 89/170 (52%), Positives = 123/170 (72%)

Query:    32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
             +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
                I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q02543 RPL18A "60S ribosomal protein L18a" [Homo sapiens (taxid:9606)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 89/170 (52%), Positives = 123/170 (72%)

Query:    32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
             +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
                I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S935 RPL18A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 89/170 (52%), Positives = 123/170 (72%)

Query:    32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
             +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:    57 EYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 116

Query:    92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI++
Sbjct:   117 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 176

Query:   152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
                I A  C+R + KQFH+SKIKFPL  + +R   R+ K  +   RPN F
Sbjct:   177 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 223

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62718	RL18A_RAT	No assigned EC number	0.5235	0.8267	0.9488	yes	no
Q9ATF5	RL18A_CASSA	No assigned EC number	0.9325	0.8811	1.0	N/A	no
P0CX23	RL20A_YEAST	No assigned EC number	0.4914	0.8168	0.9593	yes	no
P0CX24	RL20B_YEAST	No assigned EC number	0.4914	0.8168	0.9593	yes	no
Q3T003	RL18A_BOVIN	No assigned EC number	0.5235	0.8267	0.9488	yes	no
P05732	RL20_SCHPO	No assigned EC number	0.4853	0.8415	0.9659	yes	no
P62717	RL18A_MOUSE	No assigned EC number	0.5235	0.8267	0.9488	yes	no
P51418	R18A2_ARATH	No assigned EC number	0.9213	0.8811	1.0	yes	no
P41093	RL18A_DROME	No assigned EC number	0.5379	0.7821	0.8926	yes	no
Q9LUD4	R18A3_ARATH	No assigned EC number	0.9101	0.8811	1.0	no	no
Q943F3	RL18A_ORYSJ	No assigned EC number	0.8932	0.8811	1.0	yes	no
Q7ZWJ4	RL18A_DANRE	No assigned EC number	0.5117	0.8267	0.9488	yes	no
Q54MK8	RL18A_DICDI	No assigned EC number	0.5614	0.8217	0.9707	yes	no
Q02543	RL18A_HUMAN	No assigned EC number	0.5235	0.8267	0.9488	yes	no
O44480	RL18A_CAEEL	No assigned EC number	0.5337	0.7326	0.8222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam01775	55	pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX pro	4e-16
COG2157	85	COG2157, RPL20A, Ribosomal protein L20A (L18A) [Tr	1e-15

>gnl|CDD|216694 pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX protein domain

 Score = 68.8 bits (169), Expect = 4e-16
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 106 RYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 148
             +SR+G HN YKEYR     GAVE++Y+E+ SRHR++   IQ
Sbjct: 13  TEKSRSGTHNFYKEYRALNEEGAVEKVYSELGSRHRLKRSQIQ 55

This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. Length = 55

>gnl|CDD|225068 COG2157, RPL20A, Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

 Score = 68.6 bits (168), Expect = 1e-15
 Identities = 27/85 (31%), Positives = 43/85 (50%)

Query: 92  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
           E  P   +  GIW+ Y SR+G+H   KE R      A+E++Y++  SRH+V+   I+I  
Sbjct: 1   EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEE 60

Query: 152 TATIPAKLCKRESTKQFHNSKIKFP 176
              I  +  +    K+     +KFP
Sbjct: 61  VEEIEPEDVEDPVVKRLLTEDLKFP 85

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG0829	169	consensus 60S ribosomal protein L18A [Translation,	100.0
PF01775	124	Ribosomal_L18ae: Ribosomal L18ae/LX protein domain	100.0
PRK00773	76	rplX 50S ribosomal protein LX; Validated	100.0
COG2157	85	RPL20A Ribosomal protein L20A (L18A) [Translation,	99.96

>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.8e-94  Score=590.98  Aligned_cols=169  Identities=64%  Similarity=1.059  Sum_probs=165.8

Q ss_pred             eEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeEeeEEEEEecC
Q 028910           31 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSR  110 (202)
Q Consensus        31 keY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlrYdSr  110 (202)
                      +||+||||+||||++|+|+||+|+|||||||+|||||||||++|+||||++||||+|+||+|++|+.|||||||||||||
T Consensus         1 kEY~VvGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR   80 (169)
T KOG0829|consen    1 KEYQVVGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR   80 (169)
T ss_pred             CceEEeeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCcccC
Q 028910          111 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLK  190 (202)
Q Consensus       111 sgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~k~~~  190 (202)
                      ||||||||||||+|.+|||||||+|||+|||||+++||||+|+||++++|+|+.+|||||++|+||||||++..   +.+
T Consensus        81 sG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqFhd~kikFPL~~rv~~~---k~~  157 (169)
T KOG0829|consen   81 SGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQFHDSKIKFPLPHRVVNR---KSK  157 (169)
T ss_pred             CcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHhhccCcccccccccccc---ccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998866   557


Q ss_pred             CceeecCCCCCC
Q 028910          191 TTYKASRPNLFM  202 (202)
Q Consensus       191 ~~F~~~rP~t~~  202 (202)
                      ++|++.||||||
T Consensus       158 ~~fs~~rP~tf~  169 (169)
T KOG0829|consen  158 KTFSTKRPSTFF  169 (169)
T ss_pred             cccccCCCcccC
Confidence            899999999997

>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.1e-71  Score=442.27  Aligned_cols=124  Identities=64%  Similarity=1.131  Sum_probs=112.4

Q ss_pred             eeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeEeeEEEEEec
Q 028910           30 FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQS  109 (202)
Q Consensus        30 lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlrYdS  109 (202)
                      |+||+|+||+||||++|+|+||+|+|||||+|+|||||||||++|+|+||++||||+|++|+|++|+.||||||||+|||
T Consensus         1 l~ey~vvgr~lpt~k~~~p~iy~m~ifa~n~vvAkSrfwy~~~~~~K~Kk~~geiv~~~~i~ek~p~~VKnfgI~lry~s   80 (124)
T PF01775_consen    1 LKEYQVVGRKLPTEKEPNPPIYRMRIFAPNHVVAKSRFWYFLRKLKKMKKTSGEIVSCKEIFEKNPTKVKNFGIWLRYDS   80 (124)
T ss_dssp             -EEEEEEEEETT-STTS---EEEEEEEESSHHHHHHHHHHHHHHCTS--STTEEEEEEEEE-SSSTTS-EEEEEEEEEEE
T ss_pred             CeEEEEEEecCCCCCCCCCCeEEEEEecCCcEEEEhhHHHHHHHHHhhhcccceEEEeEcccCCCCcceeEEEEEEEEec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEee
Q 028910          110 RTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTA  153 (202)
Q Consensus       110 rsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVe  153 (202)
                      |+|+|||||||||+|++|||||||+|||||||+|+++|||++|+
T Consensus        81 r~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve  124 (124)
T PF01775_consen   81 RSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE  124 (124)
T ss_dssp             SSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred             CCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence            99999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.

>PRK00773 rplX 50S ribosomal protein LX; Validated

Probab=100.00  E-value=1.4e-33  Score=208.86  Aligned_cols=73  Identities=19%  Similarity=0.348  Sum_probs=71.8

Q ss_pred             eeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910           98 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN  170 (202)
Q Consensus        98 VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~  170 (202)
                      +||||||++|+||+|+|||||||||++++|||||||+||||||++++++|+|++|+||+++||+||+++||+.
T Consensus         2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~   74 (76)
T PRK00773          2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK   74 (76)
T ss_pred             ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999974

>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=6.7e-30  Score=193.19  Aligned_cols=84  Identities=31%  Similarity=0.597  Sum_probs=81.7

Q ss_pred             CCCceeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCC
Q 028910           93 KNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSK  172 (202)
Q Consensus        93 k~p~~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~~k  172 (202)
                      ..|..++|+|||+.|||++|+||||||+||+++++|+|.+||||||||++++++|+|++|+||+++|+.|+.|++|++.+
T Consensus         2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~   81 (85)
T COG2157           2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED   81 (85)
T ss_pred             CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCc
Q 028910          173 IKFP  176 (202)
Q Consensus       173 ikFP  176 (202)
                      ++||
T Consensus        82 ~~~~   85 (85)
T COG2157          82 LKFP   85 (85)
T ss_pred             ccCC
Confidence            9998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3izr_S	178	Localization Of The Large Subunit Ribosomal Protein		2e-92
3izs_S	167	Localization Of The Large Subunit Ribosomal Protein		3e-86
4a18_X	189	T.Thermophila 60s Ribosomal Subunit In Complex With		9e-47
3u5e_S	172	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-44
3zf7_S	179	High-resolution Cryo-electron Microscopy Structure		3e-27

>pdb|3IZR|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 178

Iteration: 1
 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/178 (89%), Positives = 167/178 (93%)
Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           M  FRFHQYQVVGR LPT  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
           PCIQII+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

>pdb|3IZS|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 167

Iteration: 1
 Score =  313 bits (803), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 149/167 (89%), Positives = 156/167 (93%)
Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           M  FRFHQYQVVGR LPT  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT 191
           PCIQII+TAT+  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKT
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKT 167

>pdb|4A18|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 189

Iteration: 1
 Score =  182 bits (463), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 119/174 (68%)
Query: 28  FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 87
            +  QY V    LP E+   P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L++
Sbjct: 16  MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSV 75
Query: 88  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 147
           NEI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +   I
Sbjct: 76  NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTI 135
Query: 148 QIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
           QIIRTAT+  K  KR +T    N+ +KFP+V    RP  +K +T YKA+RP  F
Sbjct: 136 QIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>pdb|3U5E|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 172

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 121/175 (69%), Gaps = 10/175 (5%)
Query: 30  FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 89
           F +YQV+GR LPTE    PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4   FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 90  IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 149
           I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I
Sbjct: 64  INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 150 IRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 201
           ++ A I      KR+  KQF    +KFPL       P R  K+  T+   RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171

>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 179

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
           MV      Y VVGR  P+EK+  P +Y+ +++A N V AKS+FW  +R+  KVK ++G +
Sbjct: 1   MVRPHLRHYCVVGRETPSEKNPQPTVYKFEVFAPNFVVAKSRFWRMMREKNKVKSTHGDV 60
Query: 85  LAINEIFEKNPTKIKNYGIWLRYQS-RTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 143
           L+  ++ +      +NY + + Y S R GY +M KE+RD    GAV Q Y ++ASRHR R
Sbjct: 61  LSC-KVVKDRKLAARNYSVDIAYYSQRCGYTHMVKEFRDVCKAGAVSQAYNDLASRHRAR 119
Query: 144 SPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPP 185
              I+++   +IP    +R +  QFH   + FPL+ ++V+ P
Sbjct: 120 YHNIEVLGVKSIPNHEVRRLNVAQFHPHNLSFPLLQRRVKAP 161
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	2e-87
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	4e-82
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	5e-78
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X Length = 189

 Score =  241 bits (616), Expect = 4e-82
 Identities = 87/176 (49%), Positives = 120/176 (68%)

Query: 26  VTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQML 85
           +  +  QY V    LP E+   P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L
Sbjct: 14  LQMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRIL 73

Query: 86  AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSP 145
           ++NEI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +  
Sbjct: 74  SVNEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPD 133

Query: 146 CIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
            IQIIRTAT+  K  KR +T    N+ +KFP+V    RP  +K +T YKA+RP  F
Sbjct: 134 TIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S Length = 172

 Score =  230 bits (587), Expect = 5e-78
 Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 6/174 (3%)

Query: 29  RFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 88
            F +YQV+GR LPTE    PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN
Sbjct: 3   HFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSIN 62

Query: 89  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 148
           +I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I 
Sbjct: 63  QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122

Query: 149 IIRTATI-PAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
           I++ A I      KR+  KQF    +KFPL  +      +K   T+   RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A Length = 78

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 97  KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIP 156
           K K + +  ++          KE          E++Y+E  S+HRV    ++I     I 
Sbjct: 4   KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEIS 63

Query: 157 AKLCKRESTKQ 167
            +  +    K 
Sbjct: 64  PEEVQDPVVKA 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 32/187 (17%), Positives = 52/187 (27%), Gaps = 51/187 (27%)

Query: 44  KDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGI 103
           K+E   I   K            FW  L K +++ +       + E+   N      Y  
Sbjct: 48  KEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQK-----FVEEVLRIN------YK- 92

Query: 104 WL------RYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTA---- 153
           +L        +  +    MY E RD   N    Q++ +    +  R      +R A    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAK---YNVSRLQPYLKLRQALLEL 147

Query: 154 -----------------TIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPT---RKLKTTY 193
                             +   +C     +   + KI F L  K    P      L+   
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLL 206

Query: 194 KASRPNL 200
               PN 
Sbjct: 207 YQIDPNW 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	100.0
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	100.0
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	100.0
3j21_l	77	50S ribosomal protein LX; archaea, archaeal, KINK-	100.0
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	100.0

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X

Probab=100.00  E-value=5.6e-99  Score=635.23  Aligned_cols=184  Identities=48%  Similarity=0.801  Sum_probs=178.4

Q ss_pred             CCCCCCcccccccccccceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEec
Q 028910           12 SFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF   91 (202)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~   91 (202)
                      +-+..||||+      +.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|+||+
T Consensus         6 ~~~~~~~~~~------~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~   79 (189)
T 4a18_X            6 AQEPKDDTLQ------MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIY   79 (189)
T ss_dssp             TTSCSSGGGS------CCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEEC
T ss_pred             ccCCCCcccc------cceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEc
Confidence            3456788887      7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccC
Q 028910           92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNS  171 (202)
Q Consensus        92 Ek~p~~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~~  171 (202)
                      ||+|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+|||++
T Consensus        80 Ek~p~~VKNfGIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~s  159 (189)
T 4a18_X           80 EKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNA  159 (189)
T ss_dssp             CSCTTSCEEEEEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCS
T ss_pred             cCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccccccCCCCcccCCceeecCCCCC
Q 028910          172 KIKFPLVFKKVRPPTRKLKTTYKASRPNLF  201 (202)
Q Consensus       172 kikFPl~~r~~~~~~k~~~~~F~~~rP~t~  201 (202)
                      +|+||||||+++.++++++++|+++||+||
T Consensus       160 kikFPl~hrv~~~~~~~~~~~F~~~rP~t~  189 (189)
T 4a18_X          160 ALKFPIVKTIHRPSEKKYRTVYKATRPTTF  189 (189)
T ss_dssp             CCEEECCCCCCCCSSGGGCCSSCSSCCCCC
T ss_pred             CCccccceeecccccccccceeeccCCCCC
Confidence            999999999998876778899999999997

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S

Probab=100.00  E-value=2.7e-98  Score=623.96  Aligned_cols=170  Identities=49%  Similarity=0.881  Sum_probs=166.9

Q ss_pred             cceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeEeeEEEEE
Q 028910           28 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY  107 (202)
Q Consensus        28 ~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlrY  107 (202)
                      +.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|+||+||+|++||||||||||
T Consensus         2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY   81 (172)
T 3u5e_S            2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY   81 (172)
T ss_dssp             CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred             CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeee-CCCccCCccccccccCCCcCcccccccCCCC
Q 028910          108 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI-PAKLCKRESTKQFHNSKIKFPLVFKKVRPPT  186 (202)
Q Consensus       108 dSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI-~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~  186 (202)
                      |||||||||||||||+|++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++||||||||+++.  
T Consensus        82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~--  159 (172)
T 3u5e_S           82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--  159 (172)
T ss_dssp             ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred             cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence            999999999999999999999999999999999999999999999999 89999999999999999999999999975  


Q ss_pred             cccCCceeecCCCCCC
Q 028910          187 RKLKTTYKASRPNLFM  202 (202)
Q Consensus       187 k~~~~~F~~~rP~t~~  202 (202)
                         +++|+++||+|||
T Consensus       160 ---~~~F~~~rP~t~~  172 (172)
T 3u5e_S          160 ---TKTFSYKRPSTFY  172 (172)
T ss_dssp             ---SSSCBSSCCCCCC
T ss_pred             ---CCceeccCCCCCC
Confidence               4899999999997

>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1e-36  Score=225.19  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             eeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910           97 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN  170 (202)
Q Consensus        97 ~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~  170 (202)
                      .|||||||++|+||+|+|||||||||++++|||||||+|||||||+|+++|||++|+||+++||+||+|+||+.
T Consensus         2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~   75 (77)
T 3j21_l            2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL   75 (77)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred             ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999974

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A

Probab=100.00  E-value=2.2e-34  Score=213.18  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             eeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910           97 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN  170 (202)
Q Consensus        97 ~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~  170 (202)
                      .|||||||++|+||+|+|||||||||++++||||+||+||||||++|+++|+|++|+||+++||+||+|+||+.
T Consensus         4 ~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~   77 (78)
T 4adx_G            4 KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_pred             eeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d2jxta1	78	d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Met	7e-27

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 78

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 95.6 bits (238), Expect = 7e-27
 Identities = 14/73 (19%), Positives = 26/73 (35%)

Query: 96  TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 155
            K K + +  ++          KE          E++Y+E  S+HRV    ++I     I
Sbjct: 3   MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 156 PAKLCKRESTKQF 168
             +  +    K  
Sbjct: 63  SPEEVQDPVVKAL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2jxta1	78	Ribosomal protein LX, RplX {Methanobacterium therm	99.97

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=2.7e-32  Score=200.32  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             ceeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910           96 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN  170 (202)
Q Consensus        96 ~~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~  170 (202)
                      ..|||||||++|.|++|+|||||||||+++++|+++||+|||||||+++++|+|++|+||+++||++|+|+||++
T Consensus         3 m~vK~y~V~G~~~~~~~~q~f~ke~ra~~~~~A~e~~Ys~~gSrHr~kr~~I~I~~V~eI~~~e~~~p~vkqll~   77 (78)
T d2jxta1           3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHHHHHHHHTCCCGGGEEEEEEEEECGGGCCCHHHHHHHH
T ss_pred             ceEEEEEEEEEEEcCCCccceEEEEecCCHHHHHHHHHHHHhhhcCCCccceEEEEEEEEChHHcCCHHHHHHhh
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999985