Citrus Sinensis ID: 028911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQASEEQEVYMDVETQLSIGPPERRVA
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvrgktqmKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIfsprgklyefsscSINKTIERYQKKtkdiginskivedhsqhakeeTSNMMTKLEFLEVAKRKLlgdglepctiDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLreqcgmqprqaseeqEVYMDVEtqlsigpperrva
Flexible Loop (DISEMBL)
mvrgktqmkrienatsrqvtfskrrnGLLKKAFELSVLCDAEVALIIfsprgklyefsSCSINKTIEryqkktkdiginskivedhsqhakeetsnmmtkLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILieentklreqcgmQPRQASEEQEVYMDVetqlsigpperrva
Low Complexity Region (SEG)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQieklkekekilieentklREQCGMQPRQASEEQEVYMDVETQLSIGPPERRVA
Disordered region (IsUnstruct)
************************RNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN*********************LEFLEVAKRKLLGDGLEPCTIDEL******************************************************************************
Disordered Region (DISOPRED)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ********************KEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL****************************PP*****
Disordered Region (DISEMBL)
*************ATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQASEEQEVYMDVETQLSIGPPERRVA
Disordered Region (DISPRO)
*****TQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQ*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGMQPRQASEEQEVYMDVETQLSIGPPERRVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
O82743	219	Agamous-like MADS-box pro	yes	no	0.985	0.908	0.649	1e-66
O64645	214	MADS-box protein SOC1 OS=	no	no	0.896	0.845	0.641	7e-61
Q38838	221	Agamous-like MADS-box pro	no	no	0.985	0.900	0.629	4e-59
Q9XJ60	230	MADS-box transcription fa	yes	no	0.980	0.860	0.579	3e-56
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.970	0.841	0.509	2e-51
P0C5B2	233	MADS-box transcription fa	no	no	0.970	0.841	0.504	8e-51
Q7XUN2	249	MADS-box transcription fa	no	no	0.831	0.674	0.568	1e-44
Q6EU39	250	MADS-box transcription fa	no	no	0.985	0.796	0.473	2e-42
Q40704	236	MADS-box transcription fa	no	no	0.866	0.741	0.464	5e-42
Q38836	230	Agamous-like MADS-box pro	no	no	0.851	0.747	0.476	9e-41

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score =  252 bits (643), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/211 (64%), Positives = 165/211 (78%), Gaps = 12/211 (5%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+
Sbjct: 61  SIAATIERYQRRIKEIGNNHK-RNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC-GM------ 173
           I+ELQQLENQL+RSLSRIRA+K QL RE+IEKLK +E+ L++EN  L+E+  GM      
Sbjct: 120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIA 179

Query: 174 QPRQASEEQEVYMD----VETQLSIGPPERR 200
             +      EV +D    VET L IGPPE R
Sbjct: 180 SSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score =  233 bits (594), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 147/187 (78%), Gaps = 6/187 (3%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF+S 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           ++  TI+RY + TKD      + E++ QH K E +NMM K+E LE +KRKLLG+G+  C+
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQASE 180
           I+ELQQ+E QLE+S+  IRARK Q+F+EQIE+LK+KEK L  EN KL E+ G      S 
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWG------SH 174

Query: 181 EQEVYMD 187
           E EV+ +
Sbjct: 175 ESEVWSN 181

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score =  227 bits (579), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 134/213 (62%), Positives = 159/213 (74%), Gaps = 14/213 (6%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SS 59
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 60  CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            SI KT+ERYQK+ +D+G N K   D+SQ +K+ET  +  K+E LE++ RK++G+GL+  
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHK-RNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQAS 179
           +I+ELQQLENQL+RSL +IRA+K QL RE+ EKLKEKE+ LI EN  L E+C MQ R   
Sbjct: 120 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGII 179

Query: 180 EEQEVY------------MDVETQLSIGPPERR 200
                             M+V T L IGPPE R
Sbjct: 180 GRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/214 (57%), Positives = 148/214 (69%), Gaps = 16/214 (7%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRGKLYEF+S 
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S  KTIERY+  TK+  I +K V+   +  K +   +  KLE LE  KRKLLG+ L+ C+
Sbjct: 61  STQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECS 119

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPR---- 176
           I+EL  LE +LERSL  IR RK +L  EQ+ KL+EKE  L ++N +LRE+C  QP     
Sbjct: 120 IEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAP 179

Query: 177 ---QASEEQ--------EVYMDVETQLSIGPPER 199
              +A +E            MDVET+L IG P R
Sbjct: 180 LTVRAEDENPDRNINTTNDNMDVETELFIGLPGR 213

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 148/222 (66%), Gaps = 26/222 (11%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S 
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE C
Sbjct: 61  PSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGC 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ--------- 170
           +I+EL+ LE +LE+SL  IR +K +L   QI KLKEKE+ L+++N  LR +         
Sbjct: 120 SIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAAL 179

Query: 171 ----------CGMQPRQ-----ASEEQEVYMDVETQLSIGPP 197
                         PR      ++      MDVET L IG P
Sbjct: 180 VANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLP 221

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score =  199 bits (507), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 112/222 (50%), Positives = 149/222 (67%), Gaps = 26/222 (11%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S 
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE  
Sbjct: 61  PSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGF 119

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ--------- 170
           +I+EL+ LE +LE+SL +IR +K +L  +QI KLKEKE+ L+++N  LR +         
Sbjct: 120 SIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAAL 179

Query: 171 ----------CGMQPRQ-----ASEEQEVYMDVETQLSIGPP 197
                         PR      ++      MDVET L IG P
Sbjct: 180 VANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLP 221

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            INKT+E+Y     +  G NS +     Q   +E S + TKLE L+ ++R +LG+ L P 
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLR 168
           +I ELQQLE QLE SLS+ R RK Q+  EQ++ L+ KE+ L E N +L+
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLK 169

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 136/226 (60%), Gaps = 27/226 (11%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
            I KT+ERYQ    +    N+ + E  S +   E S +  K E L+  +R LLG+ L P 
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWY--HEMSKLKAKFEALQRTQRHLLGEDLGPL 118

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQP---- 175
           ++ ELQQLE QLE +LS+ R RK QL  EQ+E+L+ KE+ L E N +L+ +  ++     
Sbjct: 119 SVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSN 178

Query: 176 ----RQASEEQ----------------EVYMDVETQLSIGPPERRV 201
               +QAS  Q                   MD E  L IG P + V
Sbjct: 179 YRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFV 224

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  170 bits (431), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 129/181 (71%), Gaps = 6/181 (3%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK-RKLLGDGLEPC 119
           S+  T+ERY+K   D   +  + E ++QH ++E+S +  ++  L+ A  R ++GD +   
Sbjct: 61  SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTM 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC-----GMQ 174
           ++ +L+Q+EN+LE+ +++IRARKN+L   ++E ++++E  L  +N  LR +      G Q
Sbjct: 121 SLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQ 180

Query: 175 P 175
           P
Sbjct: 181 P 181

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 127/172 (73%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           M RGK ++KRIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           +I  TIERY+K   D    S + E ++ + ++E++ +  +++ ++ + R L+GD L   +
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172
           + EL+Q+EN+LE+++SRIR++K++L   +IE  +++E  L  EN  LR +  
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVA 172

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
95103172	217	MADS box transcription factor [Populus t	0.990	0.921	0.729	1e-79
224074776	212	MIKC mads-box transcription factor [Popu	1.0	0.952	0.722	3e-78
224053999	170	predicted protein [Populus trichocarpa]	0.841	1.0	0.794	6e-72
225453843	218	PREDICTED: MADS-box protein SOC1 [Vitis	0.995	0.922	0.668	2e-70
444230588	215	SOC1 [Prunus salicina]	0.995	0.934	0.671	6e-70
226291977	214	SOC1 [Prunus armeniaca] gi|444230590|gb|	0.990	0.934	0.669	8e-70
346214851	214	SOC1-like protein [Prunus mume]	0.990	0.934	0.669	2e-69
269116072	218	suppressor of overexpression of CO 1 [Vi	0.995	0.922	0.663	2e-69
317106627	218	JHL05D22.4 [Jatropha curcas]	0.990	0.917	0.647	3e-69
359806378	224	uncharacterized protein LOC100805260 [Gl	0.995	0.897	0.658	2e-68

>gi|95103172|gb|ABF51526.1| MADS box transcription factor [Populus tomentosa]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/207 (72%), Positives = 179/207 (86%), Gaps = 7/207 (3%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELS+LCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSILCDAEVALIVFSTRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+N+TIERYQK+ KD+GI+S++V+D+ Q  KE+   +  K++ LEV+KRKLLGDGLE C+
Sbjct: 61  SMNRTIERYQKRAKDVGISSRMVKDNMQPVKEDAFTLAKKIDILEVSKRKLLGDGLEQCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQP--RQA 178
           ID+LQQLENQLERSL+RIRARKNQLFREQIEKLK +EKIL+EENTKLRE+CGMQP   QA
Sbjct: 121 IDDLQQLENQLERSLTRIRARKNQLFREQIEKLKGEEKILMEENTKLREKCGMQPLDLQA 180

Query: 179 SEEQEVYMD-----VETQLSIGPPERR 200
           ++  ++  D     VET+L IGPP+ R
Sbjct: 181 TKTPQILQDRQIIEVETELFIGPPDSR 207

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074776|ref|XP_002304455.1| MIKC mads-box transcription factor [Populus trichocarpa] gi|222841887|gb|EEE79434.1| MIKC mads-box transcription factor [Populus trichocarpa]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/209 (72%), Positives = 179/209 (85%), Gaps = 7/209 (3%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSSRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SIN+TIERYQK+ KD+GI+SK+V+D+ Q  KE+T  +  K+E LEV+KRKLLG+GLE C+
Sbjct: 61  SINRTIERYQKRAKDVGISSKMVQDNIQPVKEDTFTLAKKIELLEVSKRKLLGEGLETCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM-QPRQAS 179
            D+LQQLENQL RSL+RIRARKNQLFRE+IEKLK +EKIL+EENT+LRE+CGM QP  +S
Sbjct: 121 TDDLQQLENQLGRSLTRIRARKNQLFRERIEKLKGEEKILLEENTRLREKCGMQQPDLSS 180

Query: 180 EEQEVYM------DVETQLSIGPPERRVA 202
             ++  +      +VET+L IGPPE R+A
Sbjct: 181 TRKQQLLEDRQITEVETELFIGPPETRLA 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053999|ref|XP_002298078.1| predicted protein [Populus trichocarpa] gi|222845336|gb|EEE82883.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 155/170 (91%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FS RGKLYEFSS 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+N+TIE YQK+ KD+G +SK+V+D+ Q  KE+   +  K+E LEV+KRKLLGDGLEPC+
Sbjct: 61  SMNRTIESYQKRAKDVGTSSKMVKDNMQPVKEDAFTLAKKIELLEVSKRKLLGDGLEPCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170
           ID+LQQLENQLERSL+RIRARKNQLFREQIEKLK +EKIL+EENT+LRE+
Sbjct: 121 IDDLQQLENQLERSLTRIRARKNQLFREQIEKLKGEEKILMEENTELREK 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453843|ref|XP_002277773.1| PREDICTED: MADS-box protein SOC1 [Vitis vinifera] gi|95116634|gb|ABF56527.1| MADS-box protein [Vitis vinifera] gi|296089122|emb|CBI38825.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/211 (66%), Positives = 163/211 (77%), Gaps = 10/211 (4%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGL KKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINS-KIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
           S+ +TIERYQ+ TKD+  N+ K  E + QH K E +NM  K+E LE++KRKLLG+GL  C
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQA- 178
           +I+ELQQ+E QLERS+S IRARKNQ+F+EQIE+LKEKEK L  EN  L E+CG+QP QA 
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAP 180

Query: 179 --------SEEQEVYMDVETQLSIGPPERRV 201
                   S E+    DV T L IG PE R 
Sbjct: 181 NQENETLPSAERSQNSDVSTDLFIGLPEGRA 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444230588|gb|AGD88523.1| SOC1 [Prunus salicina]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 171/213 (80%), Gaps = 12/213 (5%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVALIIFSPRGKLYEF+S 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SINKTIERYQKKTKDIGINSKIV--EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP 118
           S+  TIERYQK  KD   N+K V  + + QH K+E+S+MM ++E LEV+KRKLLG+GL  
Sbjct: 61  SMQTTIERYQKHAKDNHTNNKPVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG-MQPRQ 177
           CTI+ELQ++E QLERS+S +RARK Q+F+EQIE+LKEK K L  EN +L E+CG +QPRQ
Sbjct: 121 CTIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLKEKGKALAAENERLIEKCGRIQPRQ 180

Query: 178 ASEEQE---VYM------DVETQLSIGPPERRV 201
           AS EQ     Y+      DVET+L IG PERR+
Sbjct: 181 ASNEQRENLAYIESSPSSDVETELFIGLPERRM 213

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226291977|gb|ACO40488.1| SOC1 [Prunus armeniaca] gi|444230590|gb|AGD88524.1| SOC1 [Prunus armeniaca]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 142/212 (66%), Positives = 171/212 (80%), Gaps = 12/212 (5%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVALIIFSPRGKLYEF+S 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SINKTIERYQKKTKDIGINSKIV--EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP 118
           S+  TIERYQK TKD   N+K V  + + QH K+E+S+MM ++EFLE++KRKLLG+GL  
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIEFLEISKRKLLGEGLGS 120

Query: 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG-MQPRQ 177
           C+I+ELQ++E QLERS+S +RARK Q+F+EQIE+L+EK K L  EN +L E+CG +QPRQ
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENERLIEKCGRIQPRQ 180

Query: 178 ASEEQE---VYM------DVETQLSIGPPERR 200
           AS EQ     Y       DVET+L IG PERR
Sbjct: 181 ASNEQRENLAYTESSPSSDVETELFIGLPERR 212

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214851|gb|AEO20229.1| SOC1-like protein [Prunus mume]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/212 (66%), Positives = 170/212 (80%), Gaps = 12/212 (5%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVALIIFSPRGKLYEF+S 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SINKTIERYQKKTKDIGINSKIV--EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP 118
           S+  TIERYQK TKD   N+K V  + + QH K+E+S+MM ++E LEV+KRKLLG+GL  
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG-MQPRQ 177
           C+I+ELQ++E QLERS+S +RARK Q+F+EQIE+L+EK K L  EN KL E+CG +QPRQ
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENEKLIEKCGRIQPRQ 180

Query: 178 ASEEQEVYM---------DVETQLSIGPPERR 200
           AS EQ   +         DVET+L IG PERR
Sbjct: 181 ASNEQRENLAFTESSPSSDVETELFIGLPERR 212

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269116072|gb|ACZ26527.1| suppressor of overexpression of CO 1 [Vitis vinifera]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/211 (66%), Positives = 162/211 (76%), Gaps = 10/211 (4%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGL KKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINS-KIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
           S+ +TIERYQ+ TKD+  N+ K  E + Q  K E +NM  K+E LE++KRKLLG+GL  C
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQQLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQA- 178
           +I+ELQQ+E QLERS+S IRARKNQ+F+EQIE+LKEKEK L  EN  L E+CG+QP QA 
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAP 180

Query: 179 --------SEEQEVYMDVETQLSIGPPERRV 201
                   S E+    DV T L IG PE R 
Sbjct: 181 NQENETLPSAERSQNSDVSTDLFIGLPEGRA 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106627|dbj|BAJ53133.1| JHL05D22.4 [Jatropha curcas]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 136/210 (64%), Positives = 164/210 (78%), Gaps = 10/210 (4%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRGKLYEFSS 
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           S+  TIER++K  KD  +  KI +++ QH K E ++M+ K+E LE AKRKLLG+GL  CT
Sbjct: 61  SMQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKLLGEGLGLCT 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQA-- 178
           ++ELQQ+E QL RS+S IRARKNQ+F+EQIE+L+EKE++L  EN +L E+CG+QP Q   
Sbjct: 121 LEELQQIEQQLGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFK 180

Query: 179 --------SEEQEVYMDVETQLSIGPPERR 200
                   SEE     DVET+L IG PE R
Sbjct: 181 QLGEQNMPSEESSPVSDVETELFIGLPETR 210

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806378|ref|NP_001240979.1| uncharacterized protein LOC100805260 [Glycine max] gi|255647867|gb|ACU24392.1| unknown [Glycine max]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 170/208 (81%), Gaps = 7/208 (3%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFS RG+LYEFSS 
Sbjct: 1   MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSS 60

Query: 61  SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
           SINKT+ERYQ+K +D+G+++K + +++QH KE   +M  K+E LE ++RKLLGD L+ C+
Sbjct: 61  SINKTVERYQRKIEDLGVSNKGIHENTQHLKEVDMSMAKKIEHLEDSRRKLLGDELDKCS 120

Query: 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQPRQASE 180
           IDELQQLENQLERSL +IRA KNQLFR++IEKLKE+EK L+E N +LREQ  ++ ++   
Sbjct: 121 IDELQQLENQLERSLDKIRATKNQLFRKRIEKLKEEEKCLLEVNKRLREQYRIERQRCLS 180

Query: 181 EQEVYM-------DVETQLSIGPPERRV 201
           +Q+V         +VET+L IG PERR+
Sbjct: 181 DQDVEFATKKEGEEVETELFIGRPERRM 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.985	0.908	0.606	1.1e-55
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.985	0.900	0.582	1.1e-53
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.980	0.916	0.582	4.9e-53
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.990	0.930	0.548	1.3e-50
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.975	0.920	0.545	5.8e-50
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.985	0.947	0.519	2.3e-48
UNIPROTKB|Q7XUN2	249	MADS17 "MADS-box transcription	0.737	0.598	0.593	7.8e-39
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.727	0.588	0.58	1.7e-36
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.717	0.566	0.510	2.7e-36
TAIR|locus:2165386	211	AGL72 "AGAMOUS-like 72" [Arabi	0.737	0.706	0.493	4e-35

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 128/211 (60%), Positives = 153/211 (72%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+
Sbjct:    61 SIAATIERYQRRIKEIGNNHKR-NDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQ-CGM------ 173
             I+ELQQLENQL+RSLSRIRA+K QL RE+                  +E+  GM      
Sbjct:   120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIA 179

Query:   174 --QPRQASEEQEV--YMDVETQLSIGPPERR 200
               Q   +S E  +   M+VET L IGPPE R
Sbjct:   180 SSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 124/213 (58%), Positives = 150/213 (70%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 S-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S I KT+ERYQK+ +D+G N K   D+SQ +K+ET  +  K+E LE++ RK++G+GL+  
Sbjct:    61 SSIPKTVERYQKRIQDLGSNHKR-NDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCGMQPR--- 176
             +I+ELQQLENQL+RSL +IRA+K QL RE+                   E+C MQ R   
Sbjct:   120 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGII 179

Query:   177 ----QASEEQEV-----YMDVETQLSIGPPERR 200
                  +S   E+      M+V T L IGPPE R
Sbjct:   180 GRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 124/213 (58%), Positives = 151/213 (70%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDA+V L+IFSPRGK YEFSS 
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLVIFSPRGKQYEFSSS 60

Query:    61 SINKTIERYQKKTKD-IGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S+ + IERY+  TKD +   ++  E + QH   ET+ +M K+EFLE +KRKLLG+GL  C
Sbjct:    61 SMQEIIERYKGHTKDKVQTENQAGEQNLQH---ETAGLMKKIEFLETSKRKLLGEGLGSC 117

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCG-MQPRQA 178
             T++ELQ++E QLERS+S IRARK Q+F+EQ                  RE+ G +Q RQA
Sbjct:   118 TLEELQKIEKQLERSVSIIRARKMQVFKEQIEKLNEKEKALAAENAMLREKFGGLQQRQA 177

Query:   179 S---EEQEVYM-------DVETQLSIGPPERRV 201
             S   +E EV         DVET+L IGPPE R+
Sbjct:   178 SSGEKEGEVVCTEGSDKSDVETELFIGPPECRI 210

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 114/208 (54%), Positives = 146/208 (70%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFS RGKLYEFSS 
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
             S+ + IERY++ ++D+ G    + +++ Q+ K + +++M K+E LE +KRKLLG+ L  C
Sbjct:    61 SMQEIIERYRRHSEDVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDLGSC 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCG---MQPR 176
             +++ELQQ+E QLERS+S IRARK ++FREQ                   E+CG   MQ  
Sbjct:   121 SLEELQQIEKQLERSISTIRARKMEVFREQIERLKGNVKVLATENAMLWEKCGDLEMQQT 180

Query:   177 QASEEQEVY----MDVETQLSIGPPERR 200
                E+  +      DVET+L IG PE R
Sbjct:   181 SGGEDLSIEGSEKSDVETELFIGLPECR 208

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/209 (54%), Positives = 139/209 (66%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF+S 
Sbjct:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             ++  TI+RY + TKD      + E++ QH K E +NMM K+E LE +KRKLLG+G+  C+
Sbjct:    61 NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCGMQPRQA-- 178
             I+ELQQ+E QLE+S+  IRARK Q+F+EQ                   E+ G    +   
Sbjct:   121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query:   179 ----------SEEQEVYMDVETQLSIGPP 197
                        EE     +VETQL IG P
Sbjct:   181 NKNQESTGRGDEESSPSSEVETQLFIGLP 209

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 108/208 (51%), Positives = 144/208 (69%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGK +MK+IENATSRQVTFSKRRNGLLKKA+ELSVLCDA+++LIIFS RG+LYEFSS 
Sbjct:     1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
              + KTIERY+K TKD   ++   + H Q  K+E S+M+TK+E LE  KRKLLG G+  C+
Sbjct:    61 DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query:   121 IDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCGMQPRQAS- 179
             ++ELQ++++QL+RSL ++R RK QLF+EQ                   ++  + P + S 
Sbjct:   121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query:   180 --EEQEVY------MDVETQLSIGPPER 199
               ++QE Y      ++VET L IG P R
Sbjct:   181 TDQQQEKYKVIDLNLEVETDLFIGLPNR 208

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q7XUN2 MADS17 "MADS-box transcription factor 17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 89/150 (59%), Positives = 108/150 (72%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              INKT+E+Y     +  G NS +     Q   +E S + TKLE L+ ++R +LG+ L P 
Sbjct:    61 GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQ 149
             +I ELQQLE QLE SLS+ R RK Q+  EQ
Sbjct:   121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQ 150

GO:0010093 "specification of floral organ identity" evidence=IMP

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 87/150 (58%), Positives = 105/150 (70%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 SINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              I KT+ERYQ    +    N+ + E  S +   E S +  K E L+  +R LLG+ L P 
Sbjct:    61 GITKTLERYQHCCYNAQDSNNALSETQSWY--HEMSKLKAKFEALQRTQRHLLGEDLGPL 118

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQ 149
             ++ ELQQLE QLE +LS+ R RK QL  EQ
Sbjct:   119 SVKELQQLEKQLECALSQARQRKTQLMMEQ 148

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/145 (51%), Positives = 114/145 (78%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             M RGK ++KRIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ 
Sbjct:    27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query:    61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCT 120
             +I  TIERY+K   D    S + E ++ + ++E++ +  +++ ++ + R L+GD L   +
Sbjct:    87 NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 146

Query:   121 IDELQQLENQLERSLSRIRARKNQL 145
             + EL+Q+EN+LE+++SRIR++K++L
Sbjct:   147 VKELKQVENRLEKAISRIRSKKHEL 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2165386 AGL72 "AGAMOUS-like 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 74/150 (49%), Positives = 108/150 (72%)

Query:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
             MVRGK ++K+IEN TSRQVTFSKRR+GL KKA ELSVLCDA+VA +IFS +G+LYEF+S 
Sbjct:     1 MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFASS 60

Query:    61 SINKTIERYQKKTKDIGI-NSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119
              I  TI+RY +  ++  +  +  +E + Q  K+E   M+ K+E LEV  RK++G  L+ C
Sbjct:    61 DIRNTIKRYAEYKREYFVAETHPIEQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQSLDSC 120

Query:   120 TIDELQQLENQLERSLSRIRARKNQLFREQ 149
             ++ EL ++  Q+E+SL  +R RK +L+ ++
Sbjct:   121 SVKELSEIATQIEKSLHMVRLRKAKLYEDE 150

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2Z9Q7	MAD56_ORYSI	No assigned EC number	0.5090	0.9702	0.8412	N/A	no
O82743	AGL19_ARATH	No assigned EC number	0.6492	0.9851	0.9086	yes	no
Q9XJ60	MAD50_ORYSJ	No assigned EC number	0.5794	0.9801	0.8608	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-42
smart00432	59	smart00432, MADS, MADS domain	6e-32
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-31
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	8e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-24
pfam01486	100	pfam01486, K-box, K-box region	4e-22
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  136 bits (346), Expect = 2e-42
 Identities = 57/69 (82%), Positives = 62/69 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          RGK ++KRIEN+T+RQVTFSKRRNGLLKKA ELSVLCDAEVALIIFS  GKLYEFSS S+
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSM 61

Query: 63 NKTIERYQK 71
           K IERYQK
Sbjct: 62 EKIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  109 bits (275), Expect = 6e-32
 Identities = 46/57 (80%), Positives = 51/57 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K ++KRIEN T+RQVTFSKRRNGL KKA ELSVLCDAEVALI+FSP GKLYEF+S
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  107 bits (269), Expect = 7e-31
 Identities = 47/57 (82%), Positives = 51/57 (89%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          RGK ++KRIEN TSRQVTFSKRRNGL KKA ELSVLCDAEVA+I+FSP GKLYEF S
Sbjct: 2  RGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 92.3 bits (230), Expect = 8e-25
 Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCS 61
          R K ++KRIEN   R VTFSKRR GL KKA ELS LC AEVA+I++SP GKLY F  S  
Sbjct: 2  RKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE 61

Query: 62 INKTIERYQKKTK 74
          +   I R++  + 
Sbjct: 62 VEGVISRFEVLSA 74

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 89.4 bits (222), Expect = 4e-24
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 9  KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          KRIEN ++RQVTFSKRRNG+ KKA ELSVLCDAEVA+IIFS  GKLYE+SS
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 85.7 bits (213), Expect = 4e-22
 Identities = 37/87 (42%), Positives = 57/87 (65%)

Query: 84  EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN 143
           E   ++ ++E + +  + E L+  +R LLG+ L   ++ ELQQLE QLE  L  IR+RKN
Sbjct: 11  ESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKN 70

Query: 144 QLFREQIEKLKEKEKILIEENTKLREQ 170
           +L   QIE+L++KE+ L EEN  LR++
Sbjct: 71  ELLLNQIEELQKKERELQEENRNLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
           +   K  +  I N T R VTFSKR++G+ KKAFELSVL   EV L++ S  G ++ F++
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT 139

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.95
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.84
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.82
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.54
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.21
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	90.83
PRK04098	158	sec-independent translocase; Provisional	88.66
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.11
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	87.46
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	86.84
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.46
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.61
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.15
KOG4797	123	consensus Transcriptional regulator [Transcription	84.24
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.42

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=2e-40  Score=263.78  Aligned_cols=162  Identities=47%  Similarity=0.656  Sum_probs=132.1

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc--cchhhhhhhcccccccc
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGI   78 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s--~~~il~RY~~~~~~~~~   78 (202)
                      |||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++++  |..|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999986  99999999997766544


Q ss_pred             cccccccc-h-------------------HHHHHHHhhhHhHHHHHHH---HHhhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 028911           79 NSKIVEDH-S-------------------QHAKEETSNMMTKLEFLEV---AKRKLLGDGLEPCTI-DELQQLENQLERS  134 (202)
Q Consensus        79 ~~~~~~~~-~-------------------~~l~~e~~kL~~~~e~le~---~~r~l~Ge~L~~Ls~-~EL~~Le~~Le~~  134 (202)
                      ........ .                   ..+......+....+.++.   ..+++.|+++.+++. .+|..++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            33221110 0                   1133445555566666554   378899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 028911          135 LSRIRARKNQLFREQIE-KLKEKEKILIE  162 (202)
Q Consensus       135 L~~Ir~RK~~ll~~~i~-~l~~k~~~l~~  162 (202)
                      +..++..+...+.+++. .++.++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEA  189 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhccc
Confidence            99999999988888776 55555544443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=5.4e-36  Score=203.83  Aligned_cols=75  Identities=76%  Similarity=1.040  Sum_probs=72.7

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI   76 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~   76 (202)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~   75 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS   75 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.3e-32  Score=189.96  Aligned_cols=78  Identities=51%  Similarity=0.732  Sum_probs=73.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc-cchhhhhhhccccccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGIN   79 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s-~~~il~RY~~~~~~~~~~   79 (202)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+++.|++++ +..++++|...+...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence            899999999999999999999999999999999999999999999999999999998875 999999999988765443

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=6.2e-32  Score=173.74  Aligned_cols=59  Identities=78%  Similarity=1.100  Sum_probs=58.1

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC   60 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~   60 (202)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999886

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=3.9e-31  Score=170.16  Aligned_cols=59  Identities=80%  Similarity=1.116  Sum_probs=57.8

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC   60 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~   60 (202)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.95  E-value=1.2e-29  Score=157.97  Aligned_cols=51  Identities=69%  Similarity=1.072  Sum_probs=47.1

Q ss_pred             eeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc
Q 028911            9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS   59 (202)
Q Consensus         9 k~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s   59 (202)
                      |+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999987

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.84  E-value=3.4e-20  Score=132.61  Aligned_cols=90  Identities=42%  Similarity=0.623  Sum_probs=86.7

Q ss_pred             ccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911           84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEE  163 (202)
Q Consensus        84 ~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~e  163 (202)
                      ..+.+.|+.++.+|+.+++.|+..+|+++|++|++||++||..||.+|+.+|.+||+||++++.++|+.|++|++.|.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcc
Q 028911          164 NTKLREQCGM  173 (202)
Q Consensus       164 n~~L~~~~~~  173 (202)
                      |..|+.++++
T Consensus        91 n~~L~~~~~e  100 (100)
T PF01486_consen   91 NNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHhcC
Confidence            9999999863

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.82  E-value=1.8e-21  Score=158.96  Aligned_cols=66  Identities=42%  Similarity=0.644  Sum_probs=62.1

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhh
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIE   67 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~   67 (202)
                      ||+||+|.+|+|+..|.|||||||.|+||||+|||||+|.+|-|+|.|.+|.+|.|+.|.++.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            799999999999999999999999999999999999999999999999999999999986655543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.54  E-value=2.6e-15  Score=128.13  Aligned_cols=68  Identities=40%  Similarity=0.593  Sum_probs=63.6

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhh
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIER   68 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~R   68 (202)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++|..+.|+.-
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            78999999999999999999999999999999999999999999999999999999999866655443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.21  E-value=0.21  Score=33.30  Aligned_cols=48  Identities=35%  Similarity=0.562  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC  171 (202)
Q Consensus       119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~  171 (202)
                      +|++.|..||..+..++..|     .++..+++.|+.+-..|.++|..|....
T Consensus         1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            57889999999999999998     4566777888887666666665555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=90.83  E-value=0.057  Score=27.78  Aligned_cols=14  Identities=36%  Similarity=0.888  Sum_probs=11.4

Q ss_pred             eeeeeecCCCCccc
Q 028911           43 VALIIFSPRGKLYE   56 (202)
Q Consensus        43 valivfs~~gk~~~   56 (202)
                      -.+.+|||.|++|.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45678999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK04098 sec-independent translocase; Provisional

Probab=88.66  E-value=0.18  Score=38.76  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             ceeeeeecCCCCcccccccccchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCH
Q 028911           42 EVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI  121 (202)
Q Consensus        42 ~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~  121 (202)
                      =||||||+| +|++.++- .+-..+..|++........- ..+-.+..++.+..+.+..++.....+|       ..+++
T Consensus        14 vVaLlvfGP-~KLP~~~r-~lGk~ir~~K~~~~~~k~~l-~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~~   83 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV-DIAKFFKAVKKTINDAKSTL-DKEINIEEIKEEALKYKKEFESAVESLK-------KKLKF   83 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccCh
Confidence            378999999 48776654 35555666655443321100 0012344556666666666555554443       22667


Q ss_pred             HHHHHHHHHHHH
Q 028911          122 DELQQLENQLER  133 (202)
Q Consensus       122 ~EL~~Le~~Le~  133 (202)
                      ++|.++-..+..
T Consensus        84 eel~~~~~~~~~   95 (158)
T PRK04098         84 EELDDLKITAEN   95 (158)
T ss_pred             HHHHHHhhhhhh
Confidence            777766544444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.11  E-value=4.7  Score=27.22  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENT  165 (202)
Q Consensus       119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~  165 (202)
                      +|++=|..||..+..++..|     .++.=+|+.|+.+-..|.+++.
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~   42 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999988     5677777888877655555433

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=87.46  E-value=1.7  Score=27.61  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911          144 QLFREQIEKLKEKEKILIEENTKLREQCGM  173 (202)
Q Consensus       144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~  173 (202)
                      +.+.++|..|..+...|+.||..|+..+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~p   46 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNASP   46 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            567889999999999999999999987653

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=86.84  E-value=1.1  Score=32.16  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911          149 QIEKLKEKEKILIEENTKLREQCGM  173 (202)
Q Consensus       149 ~i~~l~~k~~~l~~en~~L~~~~~~  173 (202)
                      ++..++++.+.|+|||+.|+-|++.
T Consensus        73 e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667788889999999888763

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.46  E-value=1.9  Score=27.58  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911          110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARK  142 (202)
Q Consensus       110 ~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK  142 (202)
                      +..|+||+.||++||..--..|+.-+.+++.-.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~   44 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI   44 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999998888888777776543

The function of this family is unknown.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.61  E-value=8.1  Score=25.45  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENT  165 (202)
Q Consensus       119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~  165 (202)
                      +|++=|..||..+..++..|     .|+.=+|+.|+.|-..|..|-.
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q   42 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHH
Confidence            46777888888888888777     4566666666666554444333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=85.15  E-value=13  Score=27.45  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911          144 QLFREQIEKLKEKEKILIEENTKLREQCGM  173 (202)
Q Consensus       144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~  173 (202)
                      ..|..++..++.+...|..+|..|..+++.
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999874

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=84.24  E-value=7.5  Score=27.85  Aligned_cols=26  Identities=35%  Similarity=0.602  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          144 QLFREQIEKLKEKEKILIEENTKLRE  169 (202)
Q Consensus       144 ~ll~~~i~~l~~k~~~l~~en~~L~~  169 (202)
                      +.+.++|..|-.+...|++||..|+.
T Consensus        70 e~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   70 EVLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777777777777777777764

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.42  E-value=7.3  Score=33.42  Aligned_cols=59  Identities=31%  Similarity=0.513  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911          114 DGLEPCTIDELQQLENQLERSLSRIRARKNQLF--REQIEKLKEKEKILIEENTKLREQCG  172 (202)
Q Consensus       114 e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll--~~~i~~l~~k~~~l~~en~~L~~~~~  172 (202)
                      ..++.++..+|..+...|...-..|..++..+-  ..+...+..+...+.++-..+...+.
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            558899999999999999998888887765543  35555555555555555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-15
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-15
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-15
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		3e-11
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		5e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		5e-08

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERYQKKTK--DIGINSKIVE 84
          +K + +Y +  +  +   NS IVE
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVE 85

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERY 69
          +K + +Y
Sbjct: 62 DKVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERY 69
          +K + +Y
Sbjct: 62 DKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVL DAE+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDM 61
Query: 63 NKTIERYQKKTK--DIGINSKIVE 84
          +K + +Y +  +  +   NS IVE
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVE 85

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 53/69 (76%)
Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
          M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   +L++++S 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SINKTIERY 69
           +++ + +Y
Sbjct: 61 DMDRVLLKY 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 52/67 (77%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   +L++++S  +
Sbjct: 2  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 61
Query: 63 NKTIERY 69
          ++ + +Y
Sbjct: 62 DRVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++
Sbjct: 12 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++
Sbjct: 11 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1egw_A	77	MADS box transcription enhancer factor 2, polypept	8e-40
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	8e-40
1hbx_A	92	SRF, serum response factor; gene regulation, trans	6e-39
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-38
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	8e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  129 bits (327), Expect = 8e-40
 Identities = 35/73 (47%), Positives = 54/73 (73%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQKKTKD 75
          +K + +Y +  + 
Sbjct: 62 DKVLLKYTEYNEP 74

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  130 bits (328), Expect = 8e-40
 Identities = 35/73 (47%), Positives = 54/73 (73%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQKKTKD 75
          +K + +Y +  + 
Sbjct: 62 DKVLLKYTEYNEP 74

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  127 bits (322), Expect = 6e-39
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SINKTIERYQKKT 73
           +   I     K 
Sbjct: 70 KLQPMITSETGKA 82

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  126 bits (318), Expect = 4e-38
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 SINKTIERYQKKT 73
               + + + + 
Sbjct: 76 KFEPIVTQQEGRN 88

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  125 bits (316), Expect = 8e-38
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60
            R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 SINKTIERYQKKT 73
           +   I     K 
Sbjct: 69 KLQPMITSETGKA 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 31/151 (20%)

Query: 63  NKTIERYQ-KKTKDIGINSKIVED-----H-SQHAKE----ETSNMMTK----LEFLEVA 107
              ++ Y   KT D         D     H   H K     E   +         FLE  
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-- 504

Query: 108 KRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEK------LKEKEKILI 161
            +K+  D         +     QL+     I    N    E++         K +E ++ 
Sbjct: 505 -QKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 162 EENTKLREQCGMQPRQASEEQEVYMDVETQL 192
            + T L  +  +      E++ ++ +   Q+
Sbjct: 562 SKYTDLL-RIALMA----EDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.06
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	88.14
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.3
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	82.69

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.2e-41  Score=227.83  Aligned_cols=74  Identities=47%  Similarity=0.805  Sum_probs=70.3

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD   75 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~   75 (202)
                      ||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+||++.+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987653

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=4.2e-41  Score=231.77  Aligned_cols=77  Identities=45%  Similarity=0.753  Sum_probs=74.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccccccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGI   78 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~~~   78 (202)
                      ||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||+++++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~   77 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES   77 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998775544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=3.9e-39  Score=225.59  Aligned_cols=71  Identities=44%  Similarity=0.657  Sum_probs=69.5

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhc
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK   71 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~   71 (202)
                      |||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999854

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5e-39  Score=222.28  Aligned_cols=70  Identities=37%  Similarity=0.562  Sum_probs=68.5

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhh
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ   70 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~   70 (202)
                      |||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2.5e-38  Score=222.87  Aligned_cols=69  Identities=38%  Similarity=0.570  Sum_probs=67.8

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhh
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY   69 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY   69 (202)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999983

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.06  E-value=1.7  Score=28.62  Aligned_cols=43  Identities=28%  Similarity=0.523  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTK  166 (202)
Q Consensus       119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~  166 (202)
                      +|++=|.+||..+..++..|     .++.-+|+.|+.+-..|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999988     56667777777776665554444

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=88.14  E-value=3.1  Score=25.51  Aligned_cols=53  Identities=25%  Similarity=0.411  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911          117 EPCTIDELQQLENQLERSLSRIRA--RKNQLFREQIEKLKEKEKILIEENTKLRE  169 (202)
Q Consensus       117 ~~Ls~~EL~~Le~~Le~~L~~Ir~--RK~~ll~~~i~~l~~k~~~l~~en~~L~~  169 (202)
                      +..+++|..++...|-.+=.+|..  +-+.-+.+++..++++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            457888988888888777666643  34455678899999999999999999874

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.30  E-value=1.8  Score=27.82  Aligned_cols=30  Identities=37%  Similarity=0.471  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911          144 QLFREQIEKLKEKEKILIEENTKLREQCGM  173 (202)
Q Consensus       144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~  173 (202)
                      +.|.++|.+|..+...|+.||+.|+.-...
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~asp   47 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLASP   47 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            467899999999999999999999876553

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=82.69  E-value=4.4  Score=25.21  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911          134 SLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM  173 (202)
Q Consensus       134 ~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~  173 (202)
                      +-.+.|.||    .+.+..|..++..|..+|..|...+..
T Consensus        20 AArrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~   55 (63)
T 2dgc_A           20 AARRSRARK----LQRMKQLEDKVEELLSKNYHLENEVAR   55 (63)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666    566788888889999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-34
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	5e-33
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	7e-33

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (288), Expect = 2e-34
 Identities = 35/69 (50%), Positives = 53/69 (76%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 NKTIERYQK 71
          +K + +Y +
Sbjct: 62 DKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 5e-33
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K +M+ I+N   R  TFSKR+ G++KKA+ELS L   +V L++ S  G +Y F++  +
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 63

Query: 63 NKTIERYQKK 72
             I     K
Sbjct: 64 QPMITSETGK 73

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (279), Expect = 7e-33
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query: 3  RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSI 62
          R K ++K IEN T R VTFSKR++G++KKAFELSVL   +V L++ S  G +Y FS+   
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 63

Query: 63 NKTIERYQKK 72
             + + + +
Sbjct: 64 EPIVTQQEGR 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-41  Score=219.31  Aligned_cols=71  Identities=49%  Similarity=0.834  Sum_probs=69.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK   72 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~   72 (202)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++++|++||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999763

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=214.23  Aligned_cols=71  Identities=37%  Similarity=0.549  Sum_probs=69.6

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhc
Q 028911            1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK   71 (202)
Q Consensus         1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~   71 (202)
                      +||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.|+++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-38  Score=213.57  Aligned_cols=73  Identities=42%  Similarity=0.651  Sum_probs=70.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccc
Q 028911            2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK   74 (202)
Q Consensus         2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~   74 (202)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..|++||...+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999986543