Citrus Sinensis ID: 028921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTGYTRV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccHHcccccEEEccccccccEEEc
Coil and Loop (DISEMBL)
mssqapphygslpptstsptyvppttafltrardttqsvfstrrPWRELLDIhaitrpssvgeatIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLyffrdgplvvfhrtVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHaafrgtedlycdegevadnglfsvvgtpirtgytrv
Flexible Loop (DISEMBL)
mssqapphygslpptstsptyVPPTTAfltrardttqsvfstrrpwrelLDIHAitrpssvgeatiHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEgevadnglfsvvgtpirtgytrv
Low Complexity Region (SEG)
MSSQAPPHYGSLpptstsptyvppttAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMivfivvfiawffLYFFRDGPLVVFHRTVDDRvllgilgvvtivslvltHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTGYTRV
Disordered region (IsUnstruct)
**************************AFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTG****
Disordered Region (DISOPRED)
*******************************************RPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGL**V************
Disordered Region (DISEMBL)
************PPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTGYTRV
Disordered Region (DISPRO)
*******************TYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTGYTR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTGYTRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9FRR1	209	PRA1 family protein E OS=	yes	no	0.861	0.832	0.516	6e-40
Q9C889	189	PRA1 family protein F2 OS	no	no	0.856	0.915	0.451	7e-35
O80915	220	PRA1 family protein B4 OS	no	no	0.915	0.840	0.375	1e-32
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.747	0.803	0.437	2e-32
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.861	0.801	0.482	2e-31
P93829	182	PRA1 family protein D OS=	no	no	0.757	0.840	0.424	3e-31
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.841	0.904	0.418	3e-31
Q9M012	223	PRA1 family protein B5 OS	no	no	0.900	0.816	0.392	3e-29
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.861	0.832	0.420	1e-27
Q9LYQ4	216	PRA1 family protein B6 OS	no	no	0.861	0.805	0.385	2e-26

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score =  163 bits (413), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 4/178 (2%)

Query: 15  TSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCY 74
           +STS T +  T +   RA+ TTQS+ +T RPWRE+LD+ A++ P    EA  HLK N+ Y
Sbjct: 21  SSTSNTTIIGTLS--ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISY 78

Query: 75  FRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDG--PLVVFHRTVDDRVLL 132
           FR NYA+ VLAI+FL L++HP+SMI FIVVFI W  LYF RD    +V+  + VDD+++L
Sbjct: 79  FRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVL 138

Query: 133 GILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSV 190
            +L +VT+++LV T V  NVLVSL+IG  IVG H AFR T+DL+ DE      GL S 
Sbjct: 139 VLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSA 196

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  146 bits (369), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 4/177 (2%)

Query: 8   HYGSLPPTSTSPTYVPPTT-AFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATI 66
           +YG++P TS+ P+  P     +++RA+   +S  +TRRPW+ + D  ++T P    +A  
Sbjct: 3   NYGAIP-TSSHPS--PAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAIS 59

Query: 67  HLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTV 126
            +K NL YFR NYA+ VL ILFLSLL+HP S+IV  ++ + W FLYF RD PLVVF   +
Sbjct: 60  RIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQI 119

Query: 127 DDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
           DDR +L  L V+T+V L+LTH   N+L SLL    +V +HAA R +++L+ DE   A
Sbjct: 120 DDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAA 176

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 7/192 (3%)

Query: 3   SQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVG 62
           S AP    S PP +T     P    F+ +  +T ++  S RRPW EL D  A+++P S+ 
Sbjct: 19  SAAPSSVESQPPIAT-----PAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESIS 73

Query: 63  EATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLV 120
           +A + +++N  YF+VNY  +  AI+  SL+ HP S++  + +  +W FLY FR  D P+V
Sbjct: 74  DAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIV 133

Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEG 180
           +F RT  DR  LG L + +I  + LT V   ++ +++IG  ++  H AFR  EDL+ DE 
Sbjct: 134 LFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQ 193

Query: 181 EVADNGLFSVVG 192
           E A  G  S +G
Sbjct: 194 EPAATGFLSFLG 205

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 97/151 (64%)

Query: 29  LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
           ++RA+   +   +TRR WR + D+H+   P  V +    +K NL YFR NYA+++L ++F
Sbjct: 22  ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81

Query: 89  LSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHV 148
            SL+WHP S+IVF  +   W FLYF RD PL VF   +DDR +L  L V+TIV L+LT+ 
Sbjct: 82  FSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141

Query: 149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
             N++ +L+ G  +V +HA  R T+DL+ DE
Sbjct: 142 TFNIVAALMAGAVLVLIHAVIRKTDDLFLDE 172

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 110/176 (62%), Gaps = 2/176 (1%)

Query: 16  STSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYF 75
           S  P   P    FL+R   + +   S RRPW EL+D  AI+RP S+ +A   ++RNL YF
Sbjct: 20  SQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYF 79

Query: 76  RVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDDRVLLG 133
           +VNY  IV  +L LSLL HP S++V + +F AW FLY FR  D PLVV  RT  DR  LG
Sbjct: 80  KVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLG 139

Query: 134 ILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFS 189
           +L ++TIV + LT V   +  +L+IGF IV LH AFR  EDL+ D+ E A+ GL S
Sbjct: 140 VLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 103/153 (67%)

Query: 29  LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
           +T  ++T QS+    RPW + LD+ A + PSS+ +AT  + +NL +FR+NY++I+  +L 
Sbjct: 6   ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query: 89  LSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHV 148
           L+L+  P++++ FI V +AWFFLYF R+ PL +F  T+DD ++  +L  ++I SLV T V
Sbjct: 66  LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query: 149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGE 181
           WL  L ++  G  ++ LHAA RGT+DL  D+ E
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLE 158

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 114/172 (66%), Gaps = 2/172 (1%)

Query: 8   HYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIH 67
           +YG++P +S +   V   +  L+RA+   ++  +TRR WR + D H++  P  V +A   
Sbjct: 3   NYGAIPTSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60

Query: 68  LKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVD 127
           +K NL YFR+NYA++VL ++F SL+WHP S+IVF V+ + W FLYF RD P+ +F   +D
Sbjct: 61  IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120

Query: 128 DRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
           DR +L +L V+T+V L+LT+   N++ +L+ G  +V +H+  R TEDL+ DE
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDE 172

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 13  PP--TSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKR 70
           PP  T+   +  P   AF+    +T     S  RPW ELLD  A T+P S+ EA    ++
Sbjct: 22  PPIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRK 81

Query: 71  NLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDD 128
           N  YFRVNY  IV  IL  SLL HP S+I+ + +  +W FLY FR  D PL++F R+  +
Sbjct: 82  NSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSE 141

Query: 129 RVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLF 188
              LG L + TI  +  T V   ++ +L+IG   + +H AFR  +DL+ DE + A +G  
Sbjct: 142 YETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQDHAASGFL 201

Query: 189 SVVGTP 194
           S +G P
Sbjct: 202 SFIGVP 207

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 16  STSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYF 75
           S  P   P    F +R   + +   S RRPW EL+D  ++ RP S+ +A   +++NL YF
Sbjct: 17  SQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYF 76

Query: 76  RVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDDRVLLG 133
           +VNY  IV  +L  SL  HP+S++V I +   W FLY FR  D PLVVF RT  DR  L 
Sbjct: 77  KVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLL 136

Query: 134 ILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFS 189
            L + TIV + +T V   +  +L+IG  IV +H AF   +DL+ DE E A+ GL S
Sbjct: 137 ALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLS 192

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 10/184 (5%)

Query: 14  PTSTSPTYVP--------PTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEAT 65
           PTST+P  +P             L+R   T +   +  RPW EL+D  A +RP S+ EAT
Sbjct: 7   PTSTTPDQLPGGDPQLLSSLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEAT 66

Query: 66  IHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFH 123
             +++N  YFR NY  +V  +L  SLL HP ++ +   +  +W FLYFFR  D PLV+  
Sbjct: 67  SRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGG 126

Query: 124 RTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
           RT  D   LGIL + T+V + +T V   ++ +L +G   V +H AFR  EDL+ +E E  
Sbjct: 127 RTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186

Query: 184 DNGL 187
            +GL
Sbjct: 187 GSGL 190

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224085589	201	predicted protein [Populus trichocarpa]	0.905	0.910	0.695	2e-69
224062230	195	predicted protein [Populus trichocarpa]	0.960	0.994	0.641	2e-65
147787959	206	hypothetical protein VITISV_021777 [Viti	0.990	0.970	0.576	3e-61
225453012	206	PREDICTED: PRA1 family protein E [Vitis	0.985	0.966	0.569	6e-61
224130630	212	predicted protein [Populus trichocarpa]	0.891	0.849	0.595	6e-57
225437243	188	PREDICTED: PRA1 family protein F2 isofor	0.925	0.994	0.573	5e-52
224062221	194	predicted protein [Populus trichocarpa]	0.702	0.731	0.666	8e-52
449455274	191	PREDICTED: PRA1 family protein F2-like [	0.940	0.994	0.620	1e-50
449528734	191	PREDICTED: LOW QUALITY PROTEIN: PRA1 fam	0.940	0.994	0.620	2e-50
255580921	216	Prenylated Rab acceptor protein, putativ	0.910	0.851	0.615	4e-50

>gi|224085589|ref|XP_002307629.1| predicted protein [Populus trichocarpa] gi|222857078|gb|EEE94625.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 19  PTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVN 78
           P+   P+T FLTR+ +TT + F+TRRPWREL++  + TRP S GEATI +KRNL YFRVN
Sbjct: 19  PSAAAPST-FLTRSANTTTNFFATRRPWRELIEFSSFTRPLSFGEATIRVKRNLYYFRVN 77

Query: 79  YAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVV 138
           Y MI+L ILFLSLLWHP+SMIVF+VVF+AWFFLYFFRD PLV+FHR +DDRV+LG+L +V
Sbjct: 78  YTMIILVILFLSLLWHPLSMIVFLVVFVAWFFLYFFRDQPLVIFHRPIDDRVVLGLLSIV 137

Query: 139 TIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRTG 198
           TI++L+ THVWLNVLVS+LIG  +V LHAAFRGTE+LY DE ++AD GLFSVVG+P+R G
Sbjct: 138 TIIALIFTHVWLNVLVSVLIGAAVVVLHAAFRGTENLYLDEHDLADEGLFSVVGSPMRDG 197

Query: 199 YTRV 202
           YTRV
Sbjct: 198 YTRV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062230|ref|XP_002300800.1| predicted protein [Populus trichocarpa] gi|222842526|gb|EEE80073.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 161/201 (80%), Gaps = 7/201 (3%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSS 60
           M+S +P  YGS PPT        P++ FLTRA +TT ++F+TRRPWREL++  +  RP S
Sbjct: 1   MNSPSPASYGSFPPTE-------PSSTFLTRATNTTSTIFATRRPWRELIEFSSFARPGS 53

Query: 61  VGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLV 120
           +G+ TI +KRNL YFRVNY MI+L+ILFLSLLWHP+SMIVF++VF+AWFFLYFFRD PLV
Sbjct: 54  LGDTTIRIKRNLSYFRVNYTMIILSILFLSLLWHPLSMIVFLIVFVAWFFLYFFRDQPLV 113

Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEG 180
           +FHRT+DDRV+LG+LGV TIV+L+ THVWLNVLVSLLIG  IV LHAAFR T+D+Y D+ 
Sbjct: 114 IFHRTIDDRVVLGLLGVATIVALIFTHVWLNVLVSLLIGAAIVVLHAAFRRTDDMYSDDQ 173

Query: 181 EVADNGLFSVVGTPIRTGYTR 201
           +VAD  L S VG+P R G+ R
Sbjct: 174 DVADGSLLSFVGSPTRAGHAR 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787959|emb|CAN73850.1| hypothetical protein VITISV_021777 [Vitis vinifera]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 160/208 (76%), Gaps = 8/208 (3%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTA----FLTRARDTTQSVFSTRRPWRELLDIHAIT 56
           MS ++P  YG+LP  + SP     +T+    F++RA   TQ++ +TRRPWRE LD  A++
Sbjct: 1   MSLKSPAGYGTLP--NASPAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSALS 58

Query: 57  RPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRD 116
           RP +  +A   +KRN+ YFRVNYAM++L ILF+SLLWHP SMIVF+++F+AWFFLYFFRD
Sbjct: 59  RPHNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFRD 118

Query: 117 GPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLY 176
            P+V+FH+T+DDRV+L +LG++T+V+LV T V LNVLVSL+IG  +VGLHAAFRGTEDL+
Sbjct: 119 NPVVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDLF 178

Query: 177 CDEGEVADNGLFSVV-GTPIR-TGYTRV 202
            +E EVA+ GL SV  G  +R T YTRV
Sbjct: 179 LNEEEVAEGGLLSVAGGQQLRPTNYTRV 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453012|ref|XP_002264376.1| PREDICTED: PRA1 family protein E [Vitis vinifera]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 159/209 (76%), Gaps = 10/209 (4%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTA-----FLTRARDTTQSVFSTRRPWRELLDIHAI 55
           MS ++P  YG+LP  S +   VP ++      F++RA   TQ++ +TRRPWRE LD   +
Sbjct: 1   MSLKSPAGYGTLPNASAA---VPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSVL 57

Query: 56  TRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR 115
           +RP +  +A   +KRN+ YFRVNYAM++L ILF+SLLWHP SMIVF+++F+AWFFLYFFR
Sbjct: 58  SRPHNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFR 117

Query: 116 DGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDL 175
           D P+V+FH+T+DDRV+L +LG++T+V+LV T V LNVLVSL+IG  +VGLHAAFRGTEDL
Sbjct: 118 DNPVVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDL 177

Query: 176 YCDEGEVADNGLFSVV-GTPIR-TGYTRV 202
           + +E EVA+ GL SV  G  +R T YTRV
Sbjct: 178 FLNEEEVAEGGLLSVAGGQQLRPTNYTRV 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130630|ref|XP_002328337.1| predicted protein [Populus trichocarpa] gi|222838052|gb|EEE76417.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 146/183 (79%), Gaps = 3/183 (1%)

Query: 23  PPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMI 82
           P T  F++R   +TQ++ +TRRPW+EL+ + +  RP++  +A   +K N+ YFRVNYAMI
Sbjct: 30  PTTLTFISRVSTSTQTLIATRRPWQELIKLSSFIRPNNYNDAISRIKFNVNYFRVNYAMI 89

Query: 83  VLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVS 142
            LAILFLSLLWHP+SMIVFIV+F+AW FLYF RDGP+VVF++++DDRV+L +LG+VTI++
Sbjct: 90  FLAILFLSLLWHPISMIVFIVMFVAWLFLYFGRDGPVVVFNKSLDDRVVLCVLGLVTILA 149

Query: 143 LVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGT-PIR--TGY 199
           LV THV LNVL++L+IG  IVG+HAAFRGTEDL+ DE    + GL SVVG+ P+R   GY
Sbjct: 150 LVFTHVGLNVLIALIIGVVIVGVHAAFRGTEDLFLDEESAVEGGLLSVVGSQPLRPTMGY 209

Query: 200 TRV 202
           TR+
Sbjct: 210 TRI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437243|ref|XP_002275619.1| PREDICTED: PRA1 family protein F2 isoform 1 [Vitis vinifera] gi|359479610|ref|XP_003632302.1| PREDICTED: PRA1 family protein F2 isoform 2 [Vitis vinifera]

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 144/197 (73%), Gaps = 10/197 (5%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSS 60
           MS  +   Y ++P  STS         F  RA    QS  +TRRPWR+  D+ + +RP +
Sbjct: 1   MSISSSSGYRNIPSPSTS------APQFNFRA----QSSPATRRPWRQFADLSSFSRPYA 50

Query: 61  VGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLV 120
            GE TI +KRN+ YFRVNY M+ L ILFLSLLWHPVSMIVF++VF+ WFFLYFFR+ PL+
Sbjct: 51  AGEVTIRVKRNVSYFRVNYVMMALFILFLSLLWHPVSMIVFLIVFLGWFFLYFFRNEPLM 110

Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEG 180
           +F+RT+ DR +L +LG+VTIV LVLTHVWLNV+VSL I   +VGLHAAFRGTED + DE 
Sbjct: 111 IFNRTIGDRTVLIVLGLVTIVVLVLTHVWLNVVVSLAIVVVVVGLHAAFRGTEDHFLDEQ 170

Query: 181 EVADNGLFSVVGTPIRT 197
           + A++GL SVVG+P+R 
Sbjct: 171 DAAEDGLLSVVGSPMRQ 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062221|ref|XP_002300798.1| predicted protein [Populus trichocarpa] gi|222842524|gb|EEE80071.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 124/147 (84%), Gaps = 5/147 (3%)

Query: 36  TQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHP 95
             ++F+TRRPWREL++     RP S+G  T+ +KRNL YF VNY MI+L++LFLSLLWHP
Sbjct: 2   ASTIFATRRPWRELIE-----RPYSLGNTTVRIKRNLSYFSVNYTMIILSVLFLSLLWHP 56

Query: 96  VSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVS 155
           +SMIVF++VF+AWF+LYFFRD PLV+FHRT++DRV+LG+LGV TIV+L+ THVWLNVLVS
Sbjct: 57  LSMIVFLIVFVAWFYLYFFRDQPLVIFHRTINDRVVLGLLGVATIVALIFTHVWLNVLVS 116

Query: 156 LLIGFFIVGLHAAFRGTEDLYCDEGEV 182
           LLIG  IV LHAAFR T+DLY DE ++
Sbjct: 117 LLIGAAIVLLHAAFRRTDDLYLDEQDL 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455274|ref|XP_004145378.1| PREDICTED: PRA1 family protein F2-like [Cucumis sativus] gi|449474215|ref|XP_004154107.1| PREDICTED: PRA1 family protein F2-like [Cucumis sativus]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 150/203 (73%), Gaps = 13/203 (6%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLD-IHAITRPS 59
           MSS  P  YG               T+ L+RAR  + S+++T RPWRELL  + + TRPS
Sbjct: 1   MSSNQPSPYGF------------TETSILSRARAASDSLYATLRPWRELLQPLSSFTRPS 48

Query: 60  SVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPL 119
           SVGEA I  KRNL YFRVNY  IVL ILFLSLLWHPVS+IVF++VF+AWFFLYFFRD PL
Sbjct: 49  SVGEAIIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPL 108

Query: 120 VVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
            VFHR VDDRV+L +LG+VTI +LVLT V LNVL+S+LIG F+V +HA  R T+DLY DE
Sbjct: 109 EVFHRVVDDRVVLVLLGIVTIFALVLTDVSLNVLISILIGVFLVLIHAGSRVTDDLYIDE 168

Query: 180 GEVADNGLFSVVGTPIRTGYTRV 202
            EVAD GL SVVG+P RT Y+R+
Sbjct: 169 QEVADGGLLSVVGSPTRTEYSRI 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528734|ref|XP_004171358.1| PREDICTED: LOW QUALITY PROTEIN: PRA1 family protein F2-like [Cucumis sativus]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/203 (62%), Positives = 149/203 (73%), Gaps = 13/203 (6%)

Query: 1   MSSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLD-IHAITRPS 59
           MSS  P  YG               T+ L+RAR  + SV++T RPWRELL  + + TRPS
Sbjct: 1   MSSNQPSPYGF------------TETSILSRARAASDSVYATLRPWRELLQPLSSFTRPS 48

Query: 60  SVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPL 119
           SVGEA I  KRNL YFRVNY  IVL ILFLSLLWHPVS+IVF++VF+AWFF YFFRD PL
Sbjct: 49  SVGEAIIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFXYFFRDEPL 108

Query: 120 VVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
            VFHR VDDRV+L +LG+VTI +LVLT V LNVL+S+LIG F+V +HA  R T+DLY DE
Sbjct: 109 EVFHRVVDDRVVLVLLGIVTIFALVLTDVSLNVLISILIGVFLVLIHAGSRVTDDLYIDE 168

Query: 180 GEVADNGLFSVVGTPIRTGYTRV 202
            EVAD GL SVVG+P RT Y+R+
Sbjct: 169 QEVADGGLLSVVGSPTRTEYSRI 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580921|ref|XP_002531279.1| Prenylated Rab acceptor protein, putative [Ricinus communis] gi|223529112|gb|EEF31092.1| Prenylated Rab acceptor protein, putative [Ricinus communis]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 149/195 (76%), Gaps = 11/195 (5%)

Query: 12  LPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRN 71
           LP T+TS T       F++RA   TQSV +TRRPW+ELL+  + + P +  EA   +K N
Sbjct: 29  LPTTATSLT-------FISRATSATQSVIATRRPWKELLNPSSFSCPCNYSEAMSRVKYN 81

Query: 72  LCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVL 131
           + YFRVNYAM+VL++LFLSLLWHPVSMIVFIVVFIAWFFLYF RDGP+V+F+R  DDRV+
Sbjct: 82  VNYFRVNYAMVVLSVLFLSLLWHPVSMIVFIVVFIAWFFLYFSRDGPIVLFNREFDDRVV 141

Query: 132 LGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVV 191
           L +LG+VTIV+LVLTHV LNVLV+L+IG  +VG+H AFR TEDL+ DE   A+ GL SVV
Sbjct: 142 LVVLGLVTIVALVLTHVGLNVLVALMIGAVVVGIHGAFRNTEDLFLDEESAAEGGLLSVV 201

Query: 192 GT----PIRTGYTRV 202
           G+    P  TGYTR+
Sbjct: 202 GSQPLRPTTTGYTRI 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2025615	209	PRA1.E "AT1G08770" [Arabidopsi	1.0	0.966	0.387	4.2e-31
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.801	0.746	0.420	1.2e-24
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.772	0.825	0.391	1.2e-24
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.811	0.872	0.351	2.6e-24
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.747	0.803	0.344	6.8e-24
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.841	0.798	0.372	1.8e-23
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.811	0.745	0.357	3.8e-23
TAIR|locus:2018359	182	MPI7 "CAMV movement protein in	0.811	0.901	0.329	6.1e-23
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.816	0.789	0.371	1.6e-22
TAIR|locus:2149815	223	PRA1.B5 "AT5G01640" [Arabidops	0.826	0.748	0.368	2.6e-22

TAIR|locus:2025615 PRA1.E "AT1G08770" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 81/209 (38%), Positives = 106/209 (50%)

Query:     1 MSSQAPPH-YGSLXXXXXXXXXXXXXXAFLT---RARDTTQSVFSTRRPWRELLDIHAIT 56
             M+ + PP+ YG                   T   RA+ TTQS+ +T RPWRE+LD+ A++
Sbjct:     1 MNQKPPPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALS 60

Query:    57 RPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRD 116
              P    EA  HLK N+ YFR NYA+ VLAI+FL L++HP+SM            LYF RD
Sbjct:    61 LPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRD 120

Query:   117 G--PLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVLVSLLIGFFIVGLHAAFRGTED 174
                 +V+  + VDD+                  V  NVLVSL+IG  IVG H AFR T+D
Sbjct:   121 ANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDD 180

Query:   175 LYCDEGEVADNGLFSV-VGTPIRTGYTRV 202
             L+ DE      GL S   G    + YT +
Sbjct:   181 LFLDEESARRGGLVSAGSGNRPPSSYTPI 209

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 69/164 (42%), Positives = 87/164 (53%)

Query:    28 FLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAIL 87
             FL+R   + +   S RRPW EL+D  AI+RP S+ +A   ++RNL YF+VNY  IV  +L
Sbjct:    32 FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVL 91

Query:    88 FLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDRXXXXXXXXXXXXXXXX 145
              LSLL HP S+            LY FR  D PLVV  RT  DR                
Sbjct:    92 ALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFL 151

Query:   146 XHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFS 189
               V   +  +L+IGF IV LH AFR  EDL+ D+ E A+ GL S
Sbjct:   152 TSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 61/156 (39%), Positives = 84/156 (53%)

Query:    28 FLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAIL 87
             +++RA+   +S  +TRRPW+ + D  ++T P    +A   +K NL YFR NYA+ VL IL
Sbjct:    21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFIL 80

Query:    88 FLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXH 147
             FLSLL+HP S+            LYF RD PLVVF   +DDR                 H
Sbjct:    81 FLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTH 140

Query:   148 VWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
                N+L SLL    +V +HAA R +++L+ DE   A
Sbjct:   141 ATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAA 176

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 59/168 (35%), Positives = 89/168 (52%)

Query:    29 LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
             L+RA+   ++  +TRR WR + D H++  P  V +A   +K NL YFR+NYA++VL ++F
Sbjct:    22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIF 81

Query:    89 LSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHV 148
              SL+WHP S+            LYF RD P+ +F   +DDR                 + 
Sbjct:    82 FSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNA 141

Query:   149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVAD---NGLFSVVGT 193
               N++ +L+ G  +V +H+  R TEDL+ DE E A    +GL S   T
Sbjct:   142 TFNIVGALVTGAVLVLIHSVVRKTEDLFLDE-EAATTETSGLTSYPST 188

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/151 (34%), Positives = 79/151 (52%)

Query:    29 LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
             ++RA+   +   +TRR WR + D+H+   P  V +    +K NL YFR NYA+++L ++F
Sbjct:    22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81

Query:    89 LSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHV 148
              SL+WHP S+            LYF RD PL VF   +DDR                 + 
Sbjct:    82 FSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141

Query:   149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
               N++ +L+ G  +V +HA  R T+DL+ DE
Sbjct:   142 TFNIVAALMAGAVLVLIHAVIRKTDDLFLDE 172

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 64/172 (37%), Positives = 87/172 (50%)

Query:    28 FLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAIL 87
             FL+R   + +   S RRPW EL+D  +  RP S+ ++   +++NL YF+VNY+ IV  +L
Sbjct:    31 FLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVL 90

Query:    88 FLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDRXXXXXXXXXXXXXXXX 145
               SLL HP S+            LY FR  D PLV+F R+  DR                
Sbjct:    91 AFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFM 150

Query:   146 XHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTPIRT 197
               V   +  +L IG  IV LH AFR  +DL+ DE E A+ GL S +G    T
Sbjct:   151 TSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGNSAAT 202

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/168 (35%), Positives = 88/168 (52%)

Query:    28 FLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAIL 87
             F+ +  +T ++  S RRPW EL D  A+++P S+ +A + +++N  YF+VNY  +  AI+
Sbjct:    39 FINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIV 98

Query:    88 FLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDRXXXXXXXXXXXXXXXX 145
               SL+ HP S+            LY FR  D P+V+F RT  DR                
Sbjct:    99 GFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFL 158

Query:   146 XHVWLNVLVS-LLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVG 192
               V  +VLVS ++IG  ++  H AFR  EDL+ DE E A  G  S +G
Sbjct:   159 TDVG-SVLVSAMMIGVALICAHGAFRAPEDLFLDEQEPAATGFLSFLG 205

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2018359 MPI7 "CAMV movement protein interacting protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 54/164 (32%), Positives = 86/164 (52%)

Query:    29 LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
             +T  ++T QS+    RPW + LD+ A + PSS+ +AT  + +NL +FR+NY++I+  +L 
Sbjct:     6 ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65

Query:    89 LSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHV 148
             L+L+  P+++            LYF R+ PL +F  T+DD                   V
Sbjct:    66 LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125

Query:   149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVG 192
             WL  L ++  G  ++ LHAA RGT+DL  D+ E     + S  G
Sbjct:   126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSG 169

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046739 "spread of virus in multicellular host" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 62/167 (37%), Positives = 85/167 (50%)

Query:    28 FLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAIL 87
             F +R   + +   S RRPW EL+D  ++ RP S+ +A   +++NL YF+VNY  IV  +L
Sbjct:    29 FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVL 88

Query:    88 FLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDRXXXXXXXXXXXXXXXX 145
               SL  HP+S+            LY FR  D PLVVF RT  DR                
Sbjct:    89 AFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFM 148

Query:   146 XHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVG 192
               V   +  +L+IG  IV +H AF   +DL+ DE E A+ GL S +G
Sbjct:   149 TSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLG 195

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2149815 PRA1.B5 "AT5G01640" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 63/171 (36%), Positives = 84/171 (49%)

Query:    27 AFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAI 86
             AF+    +T     S  RPW ELLD  A T+P S+ EA    ++N  YFRVNY  IV  I
Sbjct:    38 AFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALI 97

Query:    87 LFLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDRXXXXXXXXXXXXXXX 144
             L  SLL HP S+            LY FR  D PL++F R+  +                
Sbjct:    98 LGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIF 157

Query:   145 XXHVWLNVLVS-LLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGTP 194
                V  +VL+S L+IG   + +H AFR  +DL+ DE + A +G  S +G P
Sbjct:   158 FTSVG-SVLISALMIGIATICVHGAFRAPDDLFLDEQDHAASGFLSFIGVP 207

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FRR1	PRA1E_ARATH	No assigned EC number	0.5168	0.8613	0.8325	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam03208	153	pfam03208, PRA1, PRA1 family protein	4e-51
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	4e-06

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  161 bits (410), Expect = 4e-51
 Identities = 70/150 (46%), Positives = 91/150 (60%), Gaps = 1/150 (0%)

Query: 35  TTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWH 94
           + QS  +  RPW E  D    +RP S  EAT  ++RNL YF+ NYA++VLA+L LSLL +
Sbjct: 1   SVQSRLAPLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTN 60

Query: 95  PVSMIVFIVVFIAWFFLYFFRDG-PLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVL 153
           P+S+IV +V+  AW FLYF R   PLV+F RT  DR +L  L VV++  L LT     +L
Sbjct: 61  PLSLIVLLVLVAAWLFLYFLRPNEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVLL 120

Query: 154 VSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
             L  G  +V  HAAFR   DL+ DE E  
Sbjct: 121 WLLGAGLLLVLAHAAFRLRNDLFLDENEAE 150

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 25  TTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVL 84
              F    R   Q++       RE  +I  I+ P +  EA   +  NL  F  NY  I+ 
Sbjct: 12  EKTFSEIYRSIKQALGDKDVT-REFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIA 70

Query: 85  AILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTI---- 140
            +    LL++ + +IV  +V    + +   R  PLV         VL   L  V I    
Sbjct: 71  ILTIYYLLYNLLLLIVIGIVVAGVYGIRKLRGRPLVCNIELEPRSVLYAGLVCVLIPFGF 130

Query: 141 -VSLVLTHVWLNVLVSLLIGFFIVGLHAAFRG 171
             S ++T +WL+    +     +V  HAA   
Sbjct: 131 FASPIVTLLWLSGASGV-----VVFGHAALLE 157

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.9
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.84
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	87.72

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-51  Score=336.82  Aligned_cols=186  Identities=47%  Similarity=0.760  Sum_probs=175.3

Q ss_pred             CCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhcccCCCCChhHhhcCCCCCCCCCHHHHHHHHHhhHhhHHHHHHHHHHH
Q 028921            6 PPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLA   85 (202)
Q Consensus         6 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~yF~~NY~li~~~   85 (202)
                      |+.+|..|+++.... .++.+...++.+|++++.++++|||+||+|+++|++|+|++|+.+|+++|+.|||.||.+++.+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~   79 (187)
T KOG3142|consen    1 MTNQGAPPPSSSPSQ-ALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAI   79 (187)
T ss_pred             CCCCCCCCCCCCccc-ccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            456777776444432 5677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEecceeechhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 028921           86 ILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGL  165 (202)
Q Consensus        86 l~~i~ll~~P~~Li~l~~~~~~~~~l~~~~~~p~~i~gr~~~~~~~~~~l~~vs~~ll~~t~~~~~l~~~l~~s~~vvll  165 (202)
                      +.++++++||++|+++++++++|+++|+.||+|++++||+++++++++++++++++++|+++++.+++|++++|+++|+.
T Consensus        80 ~~~~sLi~~P~~Livl~~lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~  159 (187)
T KOG3142|consen   80 LLFLSLITHPLSLIVLLALVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLI  159 (187)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccCcccccCCCceeeec
Q 028921          166 HAAFRGTEDLYCDEGEVADNGLFSVVG  192 (202)
Q Consensus       166 HA~~R~~~~l~~de~~~~~~g~~~~~~  192 (202)
                      ||+||++||+|.||||+..+|++++.+
T Consensus       160 Haafr~~ddLF~dee~~~~~gl~s~~~  186 (187)
T KOG3142|consen  160 HAAFRNTDDLFLDEEEAAASGLLSFSS  186 (187)
T ss_pred             HHHHhChHhhhhhhhhcccccccccCC
Confidence            999999999999999999899998765

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=6.5e-37  Score=244.52  Aligned_cols=147  Identities=37%  Similarity=0.595  Sum_probs=138.5

Q ss_pred             hcccCCCCChhHhhcCCCCCCCCCHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 028921           37 QSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRD  116 (202)
Q Consensus        37 ~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll~~P~~Li~l~~~~~~~~~l~~~~~  116 (202)
                      +++++++|||+||+|.++|+.|+|.+++.+|+++|+.||++||++++++++++++++||..++++++++++|++++..++
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             --CCeEecceeechhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCCCCccCccccc
Q 028921          117 --GPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA  183 (202)
Q Consensus       117 --~p~~i~gr~~~~~~~~~~l~~vs~~ll~~t~~~~~l~~~l~~s~~vvllHA~~R~~~~l~~de~~~~  183 (202)
                        +++.+.++++++++++.++.+++++++++++++.+++|+++++++++++||+||++|+++.+|+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~  150 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIE  150 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHh
Confidence              8899999999999999999999999999999999999999999999999999999988766666654

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.90  E-value=7.7e-24  Score=166.31  Aligned_cols=147  Identities=23%  Similarity=0.182  Sum_probs=132.1

Q ss_pred             hhhhcccCCCCChhHhhcCCCCCCCCCHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 028921           34 DTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYF  113 (202)
Q Consensus        34 ~~~~~~l~~~RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll~~P~~Li~l~~~~~~~~~l~~  113 (202)
                      .+..+.+++.+.-+||||..|.++|++++|+.+|+-.|++||+.||..+...+..|.+++||.+|+++.+..++.+-+.+
T Consensus        20 ~s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~k   99 (169)
T COG5130          20 RSIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRK   99 (169)
T ss_pred             HHHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhh
Confidence            33444577789999999999999999999999999999999999999999999999999999999988888888877888


Q ss_pred             hcCCCeEecceeechhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCCCCccCccc
Q 028921          114 FRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGE  181 (202)
Q Consensus       114 ~~~~p~~i~gr~~~~~~~~~~l~~vs~~ll~~t~~~~~l~~~l~~s~~vvllHA~~R~~~~l~~de~~  181 (202)
                      .|++|++...+..+.+..|++++++-+++-++.+.+.+++|..++|+.+++.||++..++-. .|+||
T Consensus       100 l~g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e-~~fee  166 (169)
T COG5130         100 LRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE-KDFEE  166 (169)
T ss_pred             cccCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc-cchhh
Confidence            89999999888889999999999999999999999999999999999999999999986433 34443

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=3.7e-20  Score=148.27  Aligned_cols=134  Identities=20%  Similarity=0.261  Sum_probs=106.3

Q ss_pred             ccCCCCChhHhh-cCCCCCCC--CCHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHH
Q 028921           39 VFSTRRPWRELL-DIHAITRP--SSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVF-IVVF-IAWFFLYF  113 (202)
Q Consensus        39 ~l~~~RPw~eF~-~~~~fs~P--~s~~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll~~P~~Li~l-~~~~-~~~~~l~~  113 (202)
                      .+++.|.|+||+ +.+||..|  .|+++|.+|+.+|+.|||+||++.++..+.+..+.+|..++.- ++.+ +.-..++.
T Consensus        15 ~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa   94 (188)
T KOG4050|consen   15 ELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWA   94 (188)
T ss_pred             CCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999998 78999999  7999999999999999999999999999999999999887742 1111 11112222


Q ss_pred             hc-CCCeEecceeechhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCC
Q 028921          114 FR-DGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTE  173 (202)
Q Consensus       114 ~~-~~p~~i~gr~~~~~~~~~~l~~vs~~ll~~t~~~~~l~~~l~~s~~vvllHA~~R~~~  173 (202)
                      .. ++.++ .-|+-+|...+.+...++.+++++.++..++.+++..++++++.||++|.++
T Consensus        95 ~~~~a~~k-rmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   95 ASADANIK-RMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             HhccHHHH-HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22 22222 2244556777777888888999999999999999999999999999999884

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=87.72  E-value=2.8  Score=37.53  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=54.9

Q ss_pred             HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHhcCCCeEecceeechhHHHHHHHHHHHH
Q 028921           63 EATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPV-SMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIV  141 (202)
Q Consensus        63 ~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll~~P~-~Li~l~~~~~~~~~l~~~~~~p~~i~gr~~~~~~~~~~l~~vs~~  141 (202)
                      +.+.|..-++.-+  -|....++.+.++..+++. .++.+++++++|.|    .+.|..+....+.+-.....+..+.+.
T Consensus        91 ~~k~~~~l~l~l~--~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~Y----TgGp~PlgY~gLGEi~~~vffG~l~v~  164 (303)
T COG1575          91 SMKPALILSLALF--LLAGLALLGVILAALSDWLVLLLGLLCIAAGILY----TGGPFPLGYMGLGEIFVGVFFGPLIVL  164 (303)
T ss_pred             cCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeee----ccCCcCcccCCHHHHHHHHHHHHHHHH
Confidence            3444444444332  2344444444455556666 44456666666665    666766666677776666666655555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhhccCC
Q 028921          142 SLVLTHVWLNVLVSLLIGFFIVGLHAAFRGT  172 (202)
Q Consensus       142 ll~~t~~~~~l~~~l~~s~~vvllHA~~R~~  172 (202)
                      .-++.+....-...+..|+.+.++-+.....
T Consensus       165 g~~yiqt~~~~~~~ll~slp~gil~~~Il~a  195 (303)
T COG1575         165 GAYYIQTGRLSWAILLPSLPVGILIANILLA  195 (303)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence            5555554333333444455444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00