Citrus Sinensis ID: 028930

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MDSLCCFNASYSKLVGGRSSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPFP
cccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEEcccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEcccccEEEEEccEEEccccccccccHHHHHHHcccEEEEccccEEEEccEEEEccccc
ccccEEcccccccccccccccccccccccccEEEEEEEcccccccccHHcEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccEEEEEEcccccEEEEEccEEEEccccccccHHHHHHHHcccEEEcccccccccEEEEEEEcccc
mdslccfnasysklvggrssstgkgrsnvglVKFGFSLvkgkanhpmedyHVAKFVQLQghelglfaiydghlgetvPAYLQKHLFSNilkeeefwvdpqrsiSKAYEKTDQAILshssdlgrggstAVTAILINGQRLWVANVGDSRAVLSTAGVAVQmttdhepntergsiedkggfvsnmpEYQVILVGIINLICPFP
MDSLCCFNASYSklvggrssstgkgrsnvglVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILshssdlgrggSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVqmttdhepntergsiedkggfvSNMPEYQVILVGIINLICPFP
MDSLCCFNASYSKLVggrssstgkgrsNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPFP
***LCCFNASYSKLV************NVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSI*******************RGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQ******************GFVSNMPEYQVILVGIINLICP**
*******************************VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSH****GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPF*
MDSLCCFNASYSKLVG********GRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPFP
*****C***SYS****************VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPFP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSLCCFNASYSKLVGGRSSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGFVSNMPEYQVILVGIINLICPFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query201 2.2.26 [Sep-21-2011]
Q9S9Z7282 Probable protein phosphat yes no 0.915 0.652 0.8 4e-82
Q9LME4281 Probable protein phosphat no no 0.910 0.651 0.745 8e-77
Q7XQU7284 Probable protein phosphat no no 0.915 0.647 0.666 1e-69
Q8L7I4283 Probable protein phosphat no no 0.910 0.646 0.625 3e-63
Q0D673290 Probable protein phosphat no no 0.810 0.562 0.625 3e-53
Q9LDA7289 Probable protein phosphat no no 0.825 0.574 0.598 3e-52
Q93YW5283 Probable protein phosphat no no 0.835 0.593 0.579 6e-52
Q0JAA0321 Probable protein phosphat no no 0.865 0.542 0.543 5e-51
Q9SIU8290 Probable protein phosphat no no 0.845 0.586 0.573 6e-51
O64583339 Probable protein phosphat no no 0.736 0.436 0.532 4e-39
>sp|Q9S9Z7|P2C10_ARATH Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1 Back     alignment and function desciption
 Score =  303 bits (777), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 163/185 (88%), Gaps = 1/185 (0%)

Query: 1   MDSLCCFNASYSKLVGGR-SSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQ 59
           M  LCCF +S   LV GR S+S+GKGR+N G +KFG+SLVKGKANHPMEDYHV+KFV++ 
Sbjct: 1   MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKID 60

Query: 60  GHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS 119
           G+ELGLFAIYDGHLGE VPAYLQKHLFSNILKEE+F  DPQRSI  AYEKTDQAILSHSS
Sbjct: 61  GNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILSHSS 120

Query: 120 DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGF 179
           DLGRGGSTAVTAIL+NG+RLWVANVGDSRAVLS  G A+QMT DHEP+TER SIE KGGF
Sbjct: 121 DLGRGGSTAVTAILMNGRRLWVANVGDSRAVLSQGGQAIQMTIDHEPHTERLSIEGKGGF 180

Query: 180 VSNMP 184
           VSNMP
Sbjct: 181 VSNMP 185

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9LME4|P2C09_ARATH Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1 Back     alignment and function description
>sp|Q7XQU7|P2C41_ORYSJ Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0452000 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7I4|P2C17_ARATH Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1 Back     alignment and function description
>sp|Q0D673|P2C62_ORYSJ Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDA7|P2C39_ARATH Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1 Back     alignment and function description
>sp|Q93YW5|P2C58_ARATH Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1 Back     alignment and function description
>sp|Q0JAA0|P2C44_ORYSJ Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIU8|P2C20_ARATH Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3 Back     alignment and function description
>sp|O64583|P2C28_ARATH Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
224084662283 predicted protein [Populus trichocarpa] 0.915 0.650 0.870 1e-89
225459296283 PREDICTED: probable protein phosphatase 0.915 0.650 0.827 1e-85
449437018281 PREDICTED: probable protein phosphatase 0.900 0.644 0.844 3e-85
356508095283 PREDICTED: probable protein phosphatase 0.915 0.650 0.805 2e-84
356515790282 PREDICTED: probable protein phosphatase 0.915 0.652 0.805 3e-84
224063237283 predicted protein [Populus trichocarpa] 0.915 0.650 0.848 8e-84
255545728283 protein phosphatase 2c, putative [Ricinu 0.915 0.650 0.843 8e-84
449438775283 PREDICTED: probable protein phosphatase 0.915 0.650 0.783 3e-82
15218759282 putative protein phosphatase 2C 10 [Arab 0.915 0.652 0.8 2e-80
297846466282 hypothetical protein ARALYDRAFT_473609 [ 0.915 0.652 0.783 4e-79
>gi|224084662|ref|XP_002307378.1| predicted protein [Populus trichocarpa] gi|222856827|gb|EEE94374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 173/185 (93%), Gaps = 1/185 (0%)

Query: 1   MDSLCCFNASYSKLVGGRSSST-GKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQ 59
           MD LCCF  SYS+LVGGRSSST GKG+++ GL+K+GFSLVKGKANHPMEDYHVAKFVQ+Q
Sbjct: 1   MDWLCCFFPSYSQLVGGRSSSTSGKGKNHEGLIKYGFSLVKGKANHPMEDYHVAKFVQIQ 60

Query: 60  GHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS 119
            HELGLFAIYDGHLG+TVPAYLQKHLFSNILKEEEFWVDP RSISKAYE+TDQAILS+SS
Sbjct: 61  EHELGLFAIYDGHLGDTVPAYLQKHLFSNILKEEEFWVDPNRSISKAYERTDQAILSNSS 120

Query: 120 DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGF 179
           DLGRGGSTAVTAILIN +RLWVANVGDSRAVLS  G A QMTTDHEPNTERGSIE+KGGF
Sbjct: 121 DLGRGGSTAVTAILINSKRLWVANVGDSRAVLSRGGQARQMTTDHEPNTERGSIENKGGF 180

Query: 180 VSNMP 184
           VSNMP
Sbjct: 181 VSNMP 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459296|ref|XP_002285790.1| PREDICTED: probable protein phosphatase 2C 10 [Vitis vinifera] gi|302141960|emb|CBI19163.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437018|ref|XP_004136289.1| PREDICTED: probable protein phosphatase 2C 10-like [Cucumis sativus] gi|449496976|ref|XP_004160279.1| PREDICTED: probable protein phosphatase 2C 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356508095|ref|XP_003522796.1| PREDICTED: probable protein phosphatase 2C 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356515790|ref|XP_003526581.1| PREDICTED: probable protein phosphatase 2C 10-like [Glycine max] Back     alignment and taxonomy information
>gi|224063237|ref|XP_002301055.1| predicted protein [Populus trichocarpa] gi|222842781|gb|EEE80328.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255545728|ref|XP_002513924.1| protein phosphatase 2c, putative [Ricinus communis] gi|223547010|gb|EEF48507.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449438775|ref|XP_004137163.1| PREDICTED: probable protein phosphatase 2C 10-like [Cucumis sativus] gi|449520573|ref|XP_004167308.1| PREDICTED: probable protein phosphatase 2C 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15218759|ref|NP_174731.1| putative protein phosphatase 2C 10 [Arabidopsis thaliana] gi|75199903|sp|Q9S9Z7.1|P2C10_ARATH RecName: Full=Probable protein phosphatase 2C 10; Short=AtPP2C10 gi|5668780|gb|AAD46006.1|AC007894_4 Strong similarity to gb|AF092432 protein phosphatase type 2C from Lotus japonicus. EST gb|T76026 comes from this gene [Arabidopsis thaliana] gi|13877699|gb|AAK43927.1|AF370608_1 protein phosphatase type 2C-like protein [Arabidopsis thaliana] gi|110736368|dbj|BAF00153.1| putative protein phosphatase type 2C [Arabidopsis thaliana] gi|190684764|gb|ACE82593.1| At1g34750 [Arabidopsis thaliana] gi|332193613|gb|AEE31734.1| putative protein phosphatase 2C 10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846466|ref|XP_002891114.1| hypothetical protein ARALYDRAFT_473609 [Arabidopsis lyrata subsp. lyrata] gi|297336956|gb|EFH67373.1| hypothetical protein ARALYDRAFT_473609 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
TAIR|locus:2008341282 AT1G34750 [Arabidopsis thalian 0.915 0.652 0.756 1.6e-70
TAIR|locus:2194734283 AT1G78200 [Arabidopsis thalian 0.910 0.646 0.598 6.1e-55
TAIR|locus:2121373283 AT4G28400 [Arabidopsis thalian 0.761 0.540 0.614 1.6e-47
TAIR|locus:2087095289 AT3G15260 [Arabidopsis thalian 0.761 0.529 0.620 1.4e-46
TAIR|locus:2046046290 PIA1 "PP2C induced by AVRRPM1" 0.761 0.527 0.594 6.2e-46
TAIR|locus:2061579339 AT2G34740 [Arabidopsis thalian 0.736 0.436 0.532 1.1e-37
TAIR|locus:2183695 354 AT5G10740 [Arabidopsis thalian 0.741 0.420 0.422 4e-26
TAIR|locus:2124784 311 WIN2 "HOPW1-1-interacting 2" [ 0.741 0.479 0.415 6.6e-26
TAIR|locus:2163781 420 AT5G53140 [Arabidopsis thalian 0.741 0.354 0.396 6.6e-26
TAIR|locus:2149363 447 AT5G24940 [Arabidopsis thalian 0.741 0.333 0.422 4.9e-25
TAIR|locus:2008341 AT1G34750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 140/185 (75%), Positives = 153/185 (82%)

Query:     1 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQ 59
             M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMEDYHV+KFV++ 
Sbjct:     1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKID 60

Query:    60 GHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS 119
             G+ELGLFAIYDGHLGE VPAYLQKHLFSNILKEE+F  DPQRSI  AYEKTDQAILSHSS
Sbjct:    61 GNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILSHSS 120

Query:   120 DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGGF 179
             DLGRGGSTAVTAIL+NG+RLWVANVGDSRAVLS  G A+QMT DHEP+TER SIE KGGF
Sbjct:   121 DLGRGGSTAVTAILMNGRRLWVANVGDSRAVLSQGGQAIQMTIDHEPHTERLSIEGKGGF 180

Query:   180 VSNMP 184
             VSNMP
Sbjct:   181 VSNMP 185
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
TAIR|locus:2194734 AT1G78200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121373 AT4G28400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087095 AT3G15260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046046 PIA1 "PP2C induced by AVRRPM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061579 AT2G34740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183695 AT5G10740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124784 WIN2 "HOPW1-1-interacting 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163781 AT5G53140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149363 AT5G24940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S9Z7P2C10_ARATH3, ., 1, ., 3, ., 1, 60.80.91540.6524yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 7e-41
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 4e-37
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-28
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-20
PLN03145 365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 9e-18
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 7e-17
PRK14559645 PRK14559, PRK14559, putative protein serine/threon 5e-06
smart00331193 smart00331, PP2C_SIG, Sigma factor PP2C-like phosp 0.002
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  138 bits (350), Expect = 7e-41
 Identities = 65/161 (40%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 32  VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILK 91
              G S   G      ED  V K   L   + GLF ++DGH G     +  K L   +L+
Sbjct: 1   FSAGVSDKGGD-RKTNEDAVVIKP-NLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLE 58

Query: 92  EEEFWV-----DPQRSISKAYEKTDQAILSHS---SDLGRGGSTAVTAILINGQRLWVAN 143
           E E  +     D + ++ KA+ + D+ IL  +    D  R G+TAV A LI G +L+VAN
Sbjct: 59  ELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVA-LIRGNKLYVAN 117

Query: 144 VGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSN 182
           VGDSRAVL   G AVQ+T DH+P    ER  IE  GG VSN
Sbjct: 118 VGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PLN03145 365 Protein phosphatase 2c; Provisional 100.0
KOG0698 330 consensus Serine/threonine protein phosphatase [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.96
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.96
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.94
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.94
KOG0700 390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.93
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.93
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.77
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.57
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.4
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.18
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.17
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 98.17
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 97.8
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-37  Score=246.32  Aligned_cols=169  Identities=26%  Similarity=0.411  Sum_probs=144.8

Q ss_pred             CCCCceEEEEEeecCCCCCCCCccEEEEeee-cCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC--------
Q 028930           27 SNVGLVKFGFSLVKGKANHPMEDYHVAKFVQ-LQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--------   97 (201)
Q Consensus        27 ~~~~~~~~~~~s~~G~~r~~nED~~~~~~~~-~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~--------   97 (201)
                      ..-..++||..|++|+ |-+|||++.+.... ..-.+|.||||||||.|..+|.+++.+|+..+.....+..        
T Consensus        17 G~GNglryg~SSMQGW-R~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~   95 (379)
T KOG0697|consen   17 GEGNGLRYGVSSMQGW-RVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVE   95 (379)
T ss_pred             CcCCceeeeeccccch-hhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHH
Confidence            4456799999999999 79999999765433 3347899999999999999999999999999987655433        


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCC--CCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHH
Q 028930           98 DPQRSISKAYEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSI  173 (201)
Q Consensus        98 ~~~~~l~~~f~~~~~~l~~~~~~~--~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri  173 (201)
                      +.+.-|+..|.++|+.+.......  ...+|||.+++++.+.++|++|+||||++++|+|.+..-|.||+|  +.|++||
T Consensus        96 ~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRI  175 (379)
T KOG0697|consen   96 NVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERI  175 (379)
T ss_pred             HHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHH
Confidence            567889999999999887633211  122666666779999999999999999999999999999999999  9999999


Q ss_pred             HhCCCeEEeCCCCcceeeceeeecccCC
Q 028930          174 EDKGGFVSNMPEYQVILVGIINLICPFP  201 (201)
Q Consensus       174 ~~agg~i~~~~~~~~rv~G~l~~sR~~G  201 (201)
                      +.|||.|.-     .||||.|+|||+||
T Consensus       176 qnAGGSVMI-----qRvNGsLAVSRAlG  198 (379)
T KOG0697|consen  176 QNAGGSVMI-----QRVNGSLAVSRALG  198 (379)
T ss_pred             hcCCCeEEE-----EEecceeeeehhcc
Confidence            999999996     79999999999998

>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 3e-12
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 6e-12
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 7e-12
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 3e-10
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 5e-10
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 6e-10
3jrq_A 326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 3e-08
3nmn_B 319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 3e-08
3kdj_B 316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 3e-08
3nmv_B 324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 6e-08
3kb3_B 321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 8e-06
3qn1_B 337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 8e-06
4ds8_B 343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 8e-06
3nmt_B 341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 8e-06
3rt0_A 340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 9e-06
3ujg_B 350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 9e-06
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 55  FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAI 114
           F QL   E+  FA+YDGH G     +   H+   I+       + +  ++ A+ + D+A 
Sbjct: 28  FAQLTD-EVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF 86
Query: 115 LSHS-----SDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--N 167
            SH+     + L   G+TA  A+L +G  L VA+VGDSRA+L   G  +++T DH P   
Sbjct: 87  SSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERK 146
Query: 168 TERGSIEDKGGFVS 181
            E+  I+  GGFV+
Sbjct: 147 DEKERIKKCGGFVA 160
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 5e-56
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 2e-55
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 4e-49
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 7e-49
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 2e-48
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-47
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 3e-45
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 1e-44
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 7e-37
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 4e-31
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 3e-29
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 5e-28
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 1e-16
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 3e-13
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 7e-13
1txo_A237 Putative bacterial enzyme; serine/threonine protei 3e-11
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 2e-10
3rnr_A211 Stage II sporulation E family protein; structural 1e-09
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
 Score =  181 bits (460), Expect = 5e-56
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 16  GGRSSSTGKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGE 75
                  GK    + L   G +   GK     ED            E+  FA+YDGH G 
Sbjct: 106 ENLYFQAGKPIPKISLENVGCASQIGKRKE-NEDRFD---FAQLTDEVLYFAVYDGHGGP 161

Query: 76  TVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS-----DLGRGGSTAVT 130
               +   H+   I+       + +  ++ A+ + D+A  SH+       L   G+TA  
Sbjct: 162 AAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATV 221

Query: 131 AILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNMP 184
           A+L +G  L VA+VGDSRA+L   G  +++T DH P    E+  I+  GGFV+   
Sbjct: 222 ALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNS 277
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.98
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.97
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.95
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.95
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.94
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.93
3rnr_A211 Stage II sporulation E family protein; structural 99.85
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.19
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.12
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 98.47
3f79_A255 Probable two-component response regulator; adaptor 98.45
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 96.96
3eq2_A394 Probable two-component response regulator; adaptor 93.21
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.3e-35  Score=244.72  Aligned_cols=167  Identities=28%  Similarity=0.419  Sum_probs=141.7

Q ss_pred             CCceEEEEEeecCCCCCCCCccEEEEeeecC-CCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCC-----------
Q 028930           29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQ-GHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFW-----------   96 (201)
Q Consensus        29 ~~~~~~~~~s~~G~~r~~nED~~~~~~~~~~-~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~-----------   96 (201)
                      ...+.+++.+++|+ |++|||++++...... ..+..+|+|||||||..+|++++..+++.+.+...+.           
T Consensus        21 ~~~~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~   99 (307)
T 2p8e_A           21 GNGLRYGLSSMQGW-RVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALEL   99 (307)
T ss_dssp             ETTEEEEEEEEEET-SSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------
T ss_pred             CCCeeEEEEecCCC-CCcccceEEEEecCCCCCCCeEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhcccccccccc
Confidence            35799999999999 7999999876554321 2457899999999999999999999999987643222           


Q ss_pred             --CCHHHHHHHHHHHHHHHHHhcCCC--CCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHH
Q 028930           97 --VDPQRSISKAYEKTDQAILSHSSD--LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTER  170 (201)
Q Consensus        97 --~~~~~~l~~~f~~~~~~l~~~~~~--~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~  170 (201)
                        ..+.++|+++|.++|+.|.+....  ....+|||++++++.++++|+|||||||+|++|+|++.+||+||+|  +.|+
T Consensus       100 ~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~  179 (307)
T 2p8e_A          100 SVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREK  179 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECCccccCCCCCCCCCHHHH
Confidence              135788999999999999875432  2245788888889999999999999999999999999999999999  8899


Q ss_pred             HHHHhCCCeEEeCCCCcceeeceeeecccCC
Q 028930          171 GSIEDKGGFVSNMPEYQVILVGIINLICPFP  201 (201)
Q Consensus       171 ~Ri~~agg~i~~~~~~~~rv~G~l~~sR~~G  201 (201)
                      +||..+||.|..     .|++|.|++||+||
T Consensus       180 ~rI~~~gg~v~~-----~rv~g~l~ltRalG  205 (307)
T 2p8e_A          180 ERIQNAGGSVMI-----QRVNGSLAVSRALG  205 (307)
T ss_dssp             HHHHHTTCCEET-----TEETTTBSCSBCEE
T ss_pred             HHHHHcCCEEEe-----CcccCeEecccccc
Confidence            999999999986     79999999999997
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 201
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 1e-19
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 1e-10
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 1e-19
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 16/166 (9%)

Query: 32  VKFGFSLVKGKANHPMEDYHVAKFVQLQGHE-LGLFAIYDGHLGETVPAYLQKHLFSNIL 90
           +++G S ++G     MED H A      G E    FA+YDGH G  V  Y  +HL  +I 
Sbjct: 21  LRYGLSSMQGWRVE-MEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHIT 79

Query: 91  KEEEFW----VDPQRSISKAYEKTDQAILSH-------SSDLGRGGSTAVTAILINGQRL 139
             ++F          ++          I  H            R GSTAV  +LI+ Q  
Sbjct: 80  NNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAV-GVLISPQHT 138

Query: 140 WVANVGDSRAVLSTAGVAVQMTTDHEPN--TERGSIEDKGGFVSNM 183
           +  N GDSR +L         T DH+P+   E+  I++ GG V   
Sbjct: 139 YFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQ 184
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.95
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-38  Score=259.22  Aligned_cols=168  Identities=25%  Similarity=0.392  Sum_probs=143.8

Q ss_pred             CCCceEEEEEeecCCCCCCCCccEEEEeeecCC-CceEEEEEecCCCCChHHHHHHHHHHHHHHhccC--------CCCC
Q 028930           28 NVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQG-HELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE--------FWVD   98 (201)
Q Consensus        28 ~~~~~~~~~~s~~G~~r~~nED~~~~~~~~~~~-~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~--------~~~~   98 (201)
                      ....++||+++++|+ |++|||++++......+ +++.||||||||||.++|+++++.++..+.+...        ...+
T Consensus        17 ~~~~~~~g~~s~~G~-R~~~ED~~~~~~~~~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~   95 (295)
T d1a6qa2          17 QGNGLRYGLSSMQGW-RVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVEN   95 (295)
T ss_dssp             EETTEEEEEEEEEET-SSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHH
T ss_pred             cCCceEEEEEeCccC-CCcccCeeEEEcccCCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHH
Confidence            456799999999999 78999999877665433 5678999999999999999999999999876422        1124


Q ss_pred             HHHHHHHHHHHHHHHHHhc--CCCCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHH
Q 028930           99 PQRSISKAYEKTDQAILSH--SSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIE  174 (201)
Q Consensus        99 ~~~~l~~~f~~~~~~l~~~--~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~  174 (201)
                      +.++|+++|.++++.+...  .......+|||++++++.++++|+|||||||+|+++++.+++||.||+|  +.|++||+
T Consensus        96 ~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~~~~~lT~dH~~~~~~E~~Ri~  175 (295)
T d1a6qa2          96 VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQ  175 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecccceeeccccCcccHHHHhhHh
Confidence            6788999999999988652  2222345778888889999999999999999999999999999999999  89999999


Q ss_pred             hCCCeEEeCCCCcceeeceeeecccCC
Q 028930          175 DKGGFVSNMPEYQVILVGIINLICPFP  201 (201)
Q Consensus       175 ~agg~i~~~~~~~~rv~G~l~~sR~~G  201 (201)
                      ++||+|..     +|++|.|++||+||
T Consensus       176 ~~gg~v~~-----~r~~g~l~~tRa~G  197 (295)
T d1a6qa2         176 NAGGSVMI-----QRVNGSLAVSRALG  197 (295)
T ss_dssp             HTTCCEET-----TEETTTBSCSBCEE
T ss_pred             hcCCcccc-----cccCCceeeeeccC
Confidence            99999987     79999999999997
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure