Citrus Sinensis ID: 028942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Secondary Structure (PSIPRED)
ccccccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHcccccccccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHHccccccEEEccccccccHHHcccccccHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHHccccEEEccccccccccHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHccccccccccccHcccHccccccccc
Coil and Loop (DISEMBL)
MEISKLINIqrlvlddnhierlpvnlgklqSLKVmtldgnritslpdelGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSnnklkslpesigscysleelqandnligelPASICNLIHLKSlclnnnnigqipANLLKDCKALqnislhnnpismdqfQQMEGFEEFEARRRKKFdkqidsnvmisskglnegvdk
Flexible Loop (DISEMBL)
MEISKLINiqrlvlddnhIERLPVNLGKLQSLKVMTLDGNRitslpdelgqLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKkfdkqidsnvmisskglnegvdk
Low Complexity Region (SEG)
MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRnlvllnvsnnklkslPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDqfqqmegfeefeARRRKKFDKQIDSNVMISSKGLNEGVDK
Disordered region (IsUnstruct)
*****LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN*********************************************
Disordered Region (DISOPRED)
MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEG***
Disordered Region (DISEMBL)
MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Disordered Region (DISPRO)
*EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQI*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
P0C895	374	LRR repeats and ubiquitin	no	no	0.990	0.532	0.374	3e-31
Q9ERV7	915	p53-induced protein with	yes	no	0.691	0.151	0.371	2e-19
A6H6A4	596	Leucine-rich repeat and I	no	no	0.781	0.263	0.385	7e-19
Q4H4B6	1724	Protein scribble homolog	yes	no	0.761	0.088	0.376	2e-18
Q9Y4C4	1052	Malignant fibrous histioc	yes	no	0.845	0.161	0.333	4e-18
Q9HB75	910	p53-induced protein with	no	no	0.646	0.142	0.389	5e-18
Q9BTT6	524	Leucine-rich repeat-conta	no	no	0.691	0.265	0.371	2e-17
Q5M8G4	605	Leucine-rich repeat-conta	no	no	0.865	0.287	0.335	2e-17
Q9V780	849	Protein lap1 OS=Drosophil	yes	no	0.671	0.159	0.338	4e-17
Q6DHL5	238	Leucine-rich repeat-conta	no	no	0.855	0.722	0.305	4e-17

>sp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLK---VMTLDGNRITSLPDELGQLVRLERL 58
           +IS   ++Q+L L  N +    +    + SLK   ++++  N +T LP  +G L  L +L
Sbjct: 171 KISSFGSMQKLFLQGNGLSDESIQWEGIASLKRLMLLSISHNNLTVLPSAMGSLTSLRQL 230

Query: 59  SILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI 118
            +  N LT LP  +G L  L +L  +NN++ SLPESIG+C  L E+  + N+I ELP + 
Sbjct: 231 DVTNNKLTSLPNELGLLTQLEILKANNNRITSLPESIGNCSFLMEVDLSANIISELPETF 290

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRK 178
             L +LK+L LNN  +  +P+ L K C  L  + LHN  I+++  +Q EG+++F+ RRR 
Sbjct: 291 TKLRNLKTLELNNTGLKTLPSALFKMCLQLSTLGLHNTEITVEFLRQFEGYDDFDERRRT 350

Query: 179 KFDKQIDSNVMISSKGLNEGVDK 201
           K  KQ+D  V + S   +EG DK
Sbjct: 351 KHQKQLDFRV-VGSGQFDEGADK 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ERV7|PIDD_MOUSE p53-induced protein with a death domain OS=Mus musculus GN=Pidd PE=1 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 82/140 (58%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           + +L  +  L+L  NH+  LP  LG L +L  +T+  NR+  LP  LG L  L+RL +  
Sbjct: 149 VPELHGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLSE 208

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N+L  +P  IG+LR+L  LN+++N+L+SLP S+    SL  L  + NL+  +P  + +L 
Sbjct: 209 NLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNLLTSVPTGLVHLP 268

Query: 123 HLKSLCLNNNNIGQIPANLL 142
            +  L L +N +  +PA LL
Sbjct: 269 LITRLDLRDNRLRDLPAELL 288

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Mus musculus (taxid: 10090)

>sp|A6H6A4|LRIQ4_MOUSE Leucine-rich repeat and IQ domain-containing protein 4 OS=Mus musculus GN=Lrriq4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 97/161 (60%), Gaps = 4/161 (2%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           ++I  L N++ L LDDN + +LP ++  L +LK++ L GN + S P+E+  L+ LE+L I
Sbjct: 356 VQICALKNLEILALDDNKVRQLPPSISLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYI 415

Query: 61  ---LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
               G+ L+ LPE I  L NL  L + NN+L+ LP S+G   +LE L    NL+ +LP +
Sbjct: 416 GQDQGSKLSSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEVLDCRHNLLKQLPDA 475

Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           IC   +L+ L L +N +  +P N L     L+ ++L NNP+
Sbjct: 476 ICRTRNLRELLLEDNLLCCLPEN-LDHLVNLKVLTLMNNPM 515

Mus musculus (taxid: 10090)

>sp|Q4H4B6|SCRIB_DANRE Protein scribble homolog OS=Danio rerio GN=scrib PE=1 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +  L N++ L LD N +  LP  LG L+ L  + +  NR++ LP E+  L+ L  L +  
Sbjct: 193 LGALPNLRELWLDRNQLSSLPPELGNLRQLVCLDVSENRLSELPTEISGLIALTDLLLSE 252

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N+L  LP++IGSL+ L +L V+ N+L  L +SIG C +L EL   +NL+  LP S+  L 
Sbjct: 253 NLLEILPDSIGSLKKLSILKVNQNRLVHLTDSIGECENLTELMLTENLLQSLPRSLGKLK 312

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
            L +L ++ N +  +PA  L  C +L  +SL +N
Sbjct: 313 KLTNLNVDRNRLSSVPAE-LGGCVSLNVLSLRDN 345

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Regulates the caudal migration of the nVII motor neurons. Required for convergent extension movements during gastrulation.

Danio rerio (taxid: 7955)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 13/183 (7%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +S L  +++L L  N +  LP  LG L  L+ + +  NR+  LPD L  L RL  L +  
Sbjct: 131 VSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDH 190

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N LT  P  +  L  L  L+VS+N+L+ LPE I +  +L+ L  +   +G LPA  C L 
Sbjct: 191 NQLTAFPRQLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPAGFCELA 250

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ-------MEGFEEFEAR 175
            L+SL L+NN +  +PA        LQ + + N  +S + F++       + G EE    
Sbjct: 251 SLESLMLDNNGLQALPAQF----SCLQRLKMLN--LSSNLFEEFPAALLPLAGLEELYLS 304

Query: 176 RRK 178
           R +
Sbjct: 305 RNQ 307

Homo sapiens (taxid: 9606)

>sp|Q9HB75|PIDD_HUMAN p53-induced protein with a death domain OS=Homo sapiens GN=PIDD PE=1 SV=2

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 76/131 (58%)

Query: 12  LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
           L+L  N +  LP  LG L +L  +T+  NR+ +LP  LG L  L+RL +  N+L  LP  
Sbjct: 153 LLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPE 212

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
           IG L +L+ LN+++N+L+SLP S+    SL  L  + NL+  +PA +  L  L  L L +
Sbjct: 213 IGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRD 272

Query: 132 NNIGQIPANLL 142
           N +  +P  LL
Sbjct: 273 NQLRDLPPELL 283

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Homo sapiens (taxid: 9606)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 78/140 (55%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           EIS L ++  LV+  N +E +P  +GKL+ L ++ +D NR+T LP+ +G+   L  L + 
Sbjct: 238 EISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLT 297

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N L  LP++IG L+ L  LN   NKL SLP+ IG C SL      DN +  +PA +   
Sbjct: 298 ENQLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQA 357

Query: 122 IHLKSLCLNNNNIGQIPANL 141
             L  L +  N +  +P +L
Sbjct: 358 TELHVLDVAGNRLLHLPLSL 377

Homo sapiens (taxid: 9606)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 5/179 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           I +L N+Q+L +  N I++LP  L  LQ+LK + L  N++  LPD +G L  LE L +  
Sbjct: 124 IKELTNLQKLNISHNKIKQLPKELQHLQNLKSLLLQHNQLEELPDSIGHLSILEELDVSN 183

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N L  +  ++G L  LV  N+S+NKL +LP  IG   +L++L    NL+  +PAS+  + 
Sbjct: 184 NCLRSISSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLKQLDCTSNLLENVPASVAGME 243

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM---DQFQQMEGFEEFEARRRK 178
            L+ L L  N +  +P   L     L+ + + NN I     +  Q +      E R  K
Sbjct: 244 SLEQLYLRQNKLTYLPE--LPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNK 300

Xenopus tropicalis (taxid: 8364)

>sp|Q9V780|LAP1_DROME Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 86/136 (63%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           I+ LI++Q L+L++ ++E LP N G+L +L+++ L  N + +LP  + +L+ L+RL I G
Sbjct: 128 ITSLISLQELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGG 187

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N  T LPE +G L++L  L +  N+++ +  +IG    L+  +AN NL+  LP+ + N  
Sbjct: 188 NEFTELPEVVGELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWR 247

Query: 123 HLKSLCLNNNNIGQIP 138
           +++ L + +N++   P
Sbjct: 248 NVEVLSICSNSLEAFP 263

May have a role in assembling adherens junctions.

Drosophila melanogaster (taxid: 7227)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 28/200 (14%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           N++ + L +N IE LP  +G  Q LK  T+  N++TSLP+++G+L +LE L + GN L  
Sbjct: 39  NLRTVDLSNNKIEELPAFIGSFQHLKSFTISCNKLTSLPNDIGKLKKLETLILNGNQLKQ 98

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL------ 121
           LP +IG L++L  L++S N+ K  P  +G+   L+ L  + N I  +PA +  L      
Sbjct: 99  LPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDLSKNQIRVVPAEVAELQAIEIN 158

Query: 122 ----------------IHLKSLCLNNN--NIGQIPANLLKDCKALQNISLHNNPISMDQF 163
                             LK L L  N   +  IP ++L D + +  +S+  N   + + 
Sbjct: 159 LNQNQISSVTQEVSRTPRLKVLRLEENCLELSSIPLSILTDSQ-VSLLSVEGNLFEVKKM 217

Query: 164 QQMEGFEEFEAR---RRKKF 180
           + +EG++++  R    +KKF
Sbjct: 218 RDLEGYDKYMERFTATKKKF 237

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
356516843	263	PREDICTED: LRR repeats and ubiquitin-lik	0.995	0.760	0.845	2e-91
356516841	261	PREDICTED: LRR repeats and ubiquitin-lik	0.995	0.766	0.845	2e-91
224133032	279	predicted protein [Populus trichocarpa]	0.995	0.716	0.822	1e-90
356508506	261	PREDICTED: LRR repeats and ubiquitin-lik	0.995	0.766	0.84	1e-90
449440830	261	PREDICTED: LRR repeats and ubiquitin-lik	0.995	0.766	0.835	3e-90
449477156	261	PREDICTED: LRR repeats and ubiquitin-lik	0.995	0.766	0.835	4e-90
388493638	261	unknown [Medicago truncatula]	0.995	0.766	0.82	4e-90
255645835	261	unknown [Glycine max]	0.995	0.766	0.835	8e-90
255547259	263	leucine-rich repeat containing protein,	0.995	0.760	0.815	6e-88
297810893	262	leucine-rich repeat family protein [Arab	0.995	0.763	0.775	1e-81

>gi|356516843|ref|XP_003527102.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 2 [Glycine max]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/200 (84%), Positives = 187/200 (93%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EISKLIN+QRL+L +N IERLPVNLGKLQSLK+M LDGNRITSLPDELGQLVRLER+SI
Sbjct: 63  VEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISI 122

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES+GSC+SLEELQANDNLI +LP+S+CN
Sbjct: 123 SGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCN 182

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L HLKSLCL+NNN+ QIP NLLKDCKALQNISLH NPISMDQFQ MEGF+EFEARR+KKF
Sbjct: 183 LSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLHANPISMDQFQLMEGFQEFEARRKKKF 242

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMI SKGL+EGVD
Sbjct: 243 DKQIDSNVMIGSKGLDEGVD 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516841|ref|XP_003527101.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 1 [Glycine max]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/200 (84%), Positives = 187/200 (93%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EISKLIN+QRL+L +N IERLPVNLGKLQSLK+M LDGNRITSLPDELGQLVRLER+SI
Sbjct: 61  VEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISI 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES+GSC+SLEELQANDNLI +LP+S+CN
Sbjct: 121 SGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L HLKSLCL+NNN+ QIP NLLKDCKALQNISLH NPISMDQFQ MEGF+EFEARR+KKF
Sbjct: 181 LSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLHANPISMDQFQLMEGFQEFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMI SKGL+EGVD
Sbjct: 241 DKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133032|ref|XP_002321465.1| predicted protein [Populus trichocarpa] gi|222868461|gb|EEF05592.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/208 (82%), Positives = 188/208 (90%), Gaps = 8/208 (3%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           MEISKLIN+QRLVL DN +ERLP+NLGKLQSLKVMTLDGNRI SLPDELGQLVRLERLSI
Sbjct: 71  MEISKLINLQRLVLADNLVERLPMNLGKLQSLKVMTLDGNRIASLPDELGQLVRLERLSI 130

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N+LTCLPETIGSLRNL LLNVSNNKLK+LPESIGSC+SLEELQANDNLI +LPAS+CN
Sbjct: 131 SDNILTCLPETIGSLRNLSLLNVSNNKLKTLPESIGSCFSLEELQANDNLIEDLPASVCN 190

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ--------MEGFEEF 172
           LIHLKSL LNNN++GQIP NLLKDCKALQ+ISLH+NPISMDQFQQ        + GF+EF
Sbjct: 191 LIHLKSLSLNNNSVGQIPPNLLKDCKALQSISLHDNPISMDQFQQARHRFSSLLHGFQEF 250

Query: 173 EARRRKKFDKQIDSNVMISSKGLNEGVD 200
           E RR++KFDKQIDSNVMI SKGL+EGVD
Sbjct: 251 EGRRKRKFDKQIDSNVMIGSKGLDEGVD 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508506|ref|XP_003522997.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Glycine max]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/200 (84%), Positives = 186/200 (93%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EISKLIN+QRL+L +N IERLPVNLGKLQSLK+M LDGNRITSLPDELGQLVRLER+SI
Sbjct: 61  VEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISI 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES+GSC+SLEELQANDNLI +LP+ +CN
Sbjct: 121 SGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSLVCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L HLKSLCL+NNN+ QIP NLLKDC ALQNISLH NPISMDQFQQMEGF+EFEARR+KKF
Sbjct: 181 LSHLKSLCLDNNNVKQIPLNLLKDCIALQNISLHGNPISMDQFQQMEGFQEFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMI SKGL+EGVD
Sbjct: 241 DKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440830|ref|XP_004138187.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 188/200 (94%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           ME+ KLIN+QRLVL DN IERLP+NLGKLQSLKVM LDGN IT+LPDELGQLVRLERLS+
Sbjct: 61  MEVCKLINMQRLVLADNLIERLPMNLGKLQSLKVMILDGNHITTLPDELGQLVRLERLSV 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N+L+ LPETIGSLRNL+L+NVSNNKLKSLPESIGSC+SLEELQANDNL+ +LP+S+CN
Sbjct: 121 SRNLLSSLPETIGSLRNLLLINVSNNKLKSLPESIGSCFSLEELQANDNLMEDLPSSLCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           LIHLKSL L+NNNIGQ+P+NLLKDCKALQN+SLH NPI MDQFQQMEGFE+FEARR+KKF
Sbjct: 181 LIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLHGNPILMDQFQQMEGFEDFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMISSKGL+EGVD
Sbjct: 241 DKQIDSNVMISSKGLDEGVD 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477156|ref|XP_004154946.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 188/200 (94%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           ME+ KLIN+QRLVL DN IERLP+NLGKLQSLKVM LDGN IT+LPDELGQLVRLERLS+
Sbjct: 61  MEVCKLINMQRLVLADNLIERLPMNLGKLQSLKVMILDGNHITTLPDELGQLVRLERLSV 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N+L+ LPETIGSLRNL+L+NVSNNKLKSLPESIGSC+SLEELQANDNL+ +LP+S+CN
Sbjct: 121 SRNLLSSLPETIGSLRNLLLINVSNNKLKSLPESIGSCFSLEELQANDNLMEDLPSSLCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           LIHLKSL L+NNNIGQ+P+NLLKDCKALQN+SLH NPI MDQFQQMEGFE+FEARR+KKF
Sbjct: 181 LIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLHGNPILMDQFQQMEGFEDFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMISSKGL+EGVD
Sbjct: 241 DKQIDSNVMISSKGLDEGVD 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493638|gb|AFK34885.1| unknown [Medicago truncatula]

 Score =  335 bits (860), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 187/200 (93%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EISKLIN+QRL+L DN I+RLPVNLGKLQSLK++ LDGNRI+SLPDELGQLVRLERLSI
Sbjct: 61  VEISKLINVQRLILADNLIDRLPVNLGKLQSLKLVNLDGNRISSLPDELGQLVRLERLSI 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GN+LT LP TIGSLRNL++LN+SNNKL SLPES+GSC+SLEELQANDNLI +LP+S+CN
Sbjct: 121 AGNLLTSLPATIGSLRNLLILNISNNKLHSLPESVGSCFSLEELQANDNLIEDLPSSVCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L HLKSLCL+NNN+ QIP NLLKDCKALQN+SLH NPISMDQFQQM+GF+EFEARR+KKF
Sbjct: 181 LSHLKSLCLDNNNVKQIPMNLLKDCKALQNLSLHGNPISMDQFQQMDGFQEFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMI SKGL+EGVD
Sbjct: 241 DKQIDSNVMIGSKGLDEGVD 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645835|gb|ACU23408.1| unknown [Glycine max]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 185/200 (92%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EISKLIN+QRL+L +N IERLPVNLGKLQSLK+M LDGNRITSLPDELGQLVRLER+SI
Sbjct: 61  VEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISI 120

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GN+LT LP TIGSLRNLVLLNVSNNKL+SL ES+GSC+SLEELQANDNLI +LP+ +CN
Sbjct: 121 SGNLLTSLPATIGSLRNLVLLNVSNNKLQSLSESVGSCFSLEELQANDNLIEDLPSLVCN 180

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L HLKSLCL+NNN+ QIP NLLKDC ALQNISLH NPISMDQFQQMEGF+EFEARR+KKF
Sbjct: 181 LSHLKSLCLDNNNVKQIPLNLLKDCIALQNISLHGNPISMDQFQQMEGFQEFEARRKKKF 240

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMI SKGL+EGVD
Sbjct: 241 DKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547259|ref|XP_002514687.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223546291|gb|EEF47793.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 163/200 (81%), Positives = 185/200 (92%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +EIS+L+N+QRL+L DN IERLP+NLGKLQSLKVM LDGN I+SLPDELGQLVRLE+LSI
Sbjct: 63  IEISRLVNMQRLLLSDNLIERLPMNLGKLQSLKVMILDGNCISSLPDELGQLVRLEQLSI 122

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            GNML  LPETIGSLRNL LLNVSNNKLK+LPESIGSC+SLEELQANDN I +LPASICN
Sbjct: 123 SGNMLMSLPETIGSLRNLALLNVSNNKLKTLPESIGSCFSLEELQANDNSIEDLPASICN 182

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKF 180
           L+HLKSL LNNNN+ +IP NLLK+CKALQ ISLH+NPISMDQFQQ+EGF+EFE RR++KF
Sbjct: 183 LVHLKSLSLNNNNVSKIPTNLLKECKALQKISLHDNPISMDQFQQLEGFQEFEERRKRKF 242

Query: 181 DKQIDSNVMISSKGLNEGVD 200
           DKQIDSNVMISSKGL+EG+D
Sbjct: 243 DKQIDSNVMISSKGLDEGID 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810893|ref|XP_002873330.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319167|gb|EFH49589.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/200 (77%), Positives = 178/200 (89%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           EISKLIN+QRL++ DN +ERLP NLGKLQSLKV+ LDGNRI+ LPDELGQLVRLE+LSI 
Sbjct: 63  EISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLPDELGQLVRLEQLSIS 122

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            NML  LP+TIGSLRNLVLLNVSNN+LKSLPES+GSC SLEE+QANDN++ ELPAS+CNL
Sbjct: 123 RNMLIYLPDTIGSLRNLVLLNVSNNRLKSLPESVGSCASLEEIQANDNVVEELPASLCNL 182

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFD 181
           I LKSLCL+NN + QIP  LL  CK+LQN+SLHNNPISMDQFQ MEG++EFE RR+KKFD
Sbjct: 183 IQLKSLCLDNNQVNQIPDGLLIHCKSLQNLSLHNNPISMDQFQLMEGYQEFEERRKKKFD 242

Query: 182 KQIDSNVMISSKGLNEGVDK 201
           KQIDSNVM+ SKGL+ GVDK
Sbjct: 243 KQIDSNVMMGSKGLDVGVDK 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2142773	262	AT5G07910 "AT5G07910" [Arabido	0.995	0.763	0.65	7.9e-62
TAIR|locus:2827587	526	PIRL5 "AT2G17440" [Arabidopsis	0.691	0.264	0.374	2.6e-18
MGI|MGI:1915557	596	Lrriq4 "leucine-rich repeats a	0.781	0.263	0.341	3.2e-17
ZFIN|ZDB-GENE-030616-572	1724	scrib "scribbled homolog (Dros	0.761	0.088	0.337	5.8e-17
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.771	0.282	0.346	9.4e-17
MGI|MGI:2442313	524	Lrrc1 "leucine rich repeat con	0.726	0.278	0.342	1.4e-16
UNIPROTKB|E1C0D6	1526	E1C0D6 "Uncharacterized protei	0.781	0.102	0.316	2.2e-16
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.786	0.282	0.306	2.6e-16
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.786	0.282	0.306	2.6e-16
ZFIN|ZDB-GENE-040718-372	238	lrrc57 "leucine rich repeat co	0.781	0.659	0.3	6e-16

TAIR|locus:2142773 AT5G07910 "AT5G07910" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 130/200 (65%), Positives = 150/200 (75%)

Query:     2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
             EISKLIN+QRL++ DN +ERLP NLGKLQSLKV+ LDGNRI+ LPDELGQLVRLE+LSI 
Sbjct:    63 EISKLINMQRLLIADNLVERLPGNLGKLQSLKVLMLDGNRISCLPDELGQLVRLEQLSIS 122

Query:    62 GNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNL 121
              NML  LP+TIGSLR               PES+GSC SLEE+QANDN++ ELPAS+CNL
Sbjct:   123 RNMLIYLPDTIGSLRNLLLLNVSNNRLKSLPESVGSCASLEEVQANDNVVEELPASLCNL 182

Query:   122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDXXXXXXXXXXXXARRRKKFD 181
             I LKSL L+NN + QIP  LL  CK+LQN+SLHNNPISMD             RR+KKFD
Sbjct:   183 IQLKSLSLDNNQVNQIPDGLLIHCKSLQNLSLHNNPISMDQFQLMEGYQDFEERRKKKFD 242

Query:   182 KQIDSNVMISSKGLNEGVDK 201
             KQIDSNVM+ SK L+ GVDK
Sbjct:   243 KQIDSNVMMGSKALDVGVDK 262

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2827587 PIRL5 "AT2G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 52/139 (37%), Positives = 77/139 (55%)

Query:     3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             I  LI++ RL L  N I +LP ++G L +L  + L GN+++SLP    +L+ LE L +  
Sbjct:   249 IGGLISLTRLDLHSNRIGQLPESIGDLLNLVNLNLSGNQLSSLPSSFNRLIHLEELDLSS 308

Query:    63 NMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLI 122
             N L+ LPE+IGSL                P SI  C S+EEL+A+ N +  LP ++  L 
Sbjct:   309 NSLSILPESIGSLVSLKKLDVETNNIEEIPHSISGCSSMEELRADYNRLKALPEAVGKLS 368

Query:   123 HLKSLCLNNNNIGQIPANL 141
              L+ L +  NNI Q+P  +
Sbjct:   369 TLEILTVRYNNIRQLPTTM 387

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1915557 Lrriq4 "leucine-rich repeats and IQ motif containing 4" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 55/161 (34%), Positives = 87/161 (54%)

Query:     1 MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             ++I  L N++ L LDDN + +LP ++  L +LK++ L GN + S P+E+  L+ LE+L I
Sbjct:   356 VQICALKNLEILALDDNKVRQLPPSISLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYI 415

Query:    61 ---LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPAS 117
                 G+ L+ LPE I  L                P S+G   +LE L    NL+ +LP +
Sbjct:   416 GQDQGSKLSSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEVLDCRHNLLKQLPDA 475

Query:   118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
             IC   +L+ L L +N +  +P NL      L+ ++L NNP+
Sbjct:   476 ICRTRNLRELLLEDNLLCCLPENL-DHLVNLKVLTLMNNPM 515

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030616-572 scrib "scribbled homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 5.8e-17, P = 5.8e-17
 Identities = 52/154 (33%), Positives = 81/154 (52%)

Query:     3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             +  L N++ L LD N +  LP  LG L+ L  + +  NR++ LP E+  L+ L  L +  
Sbjct:   193 LGALPNLRELWLDRNQLSSLPPELGNLRQLVCLDVSENRLSELPTEISGLIALTDLLLSE 252

Query:    63 NMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLI 122
             N+L  LP++IGSL+                +SIG C +L EL   +NL+  LP S+  L 
Sbjct:   253 NLLEILPDSIGSLKKLSILKVNQNRLVHLTDSIGECENLTELMLTENLLQSLPRSLGKLK 312

Query:   123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
              L +L ++ N +  +PA L   C +L  +SL +N
Sbjct:   313 KLTNLNVDRNRLSSVPAEL-GGCVSLNVLSLRDN 345

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0014021 "secondary neural tube formation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0016020 "membrane" evidence=IEA;IDA

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0045930 "negative regulation of mitotic cell cycle" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0050918 "positive chemotaxis" evidence=ISS

GO:0005913 "cell-cell adherens junction" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0032863 "activation of Rac GTPase activity" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISS

GO:0060561 "apoptotic process involved in morphogenesis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 54/156 (34%), Positives = 83/156 (53%)

Query:     3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             I  L ++ +L L  N I +LP ++G+L +L  + L  N+++SLP    +LVRLE L +  
Sbjct:   265 IGGLSSLTKLDLHSNRIGQLPESIGELLNLVYLNLGSNQLSSLPSAFSRLVRLEELDLSC 324

Query:    63 NMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLI 122
             N L  LPE+IGSL                P SIG C SL EL+A+ N +  LP +I  + 
Sbjct:   325 NNLPILPESIGSLVSLKKLDVETNDIEEIPYSIGGCSSLIELRADYNKLKALPEAIGKIT 384

Query:   123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
              L+ L +  NNI Q+P  +     +L+ + +  N +
Sbjct:   385 TLEILSVRYNNIRQLPTTM-SSLASLKELDVSFNEL 419

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

MGI|MGI:2442313 Lrrc1 "leucine rich repeat containing 1" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 51/149 (34%), Positives = 75/149 (50%)

Query:     2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
             EIS L ++  LV+  N +E +P  +GKL+ L ++ LD NR+T LP+ +G    L  L + 
Sbjct:   238 EISGLTSLTYLVISQNLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLT 297

Query:    62 GNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNL 121
              N L  LP++IG L+               P+ IG C SL      DN +  LPA +   
Sbjct:   298 ENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTMFCIRDNRLTRLPAEVSQA 357

Query:   122 IHLKSLCLNNNNIGQIPANL--LKDCKAL 148
             + L  L +  N +  +P +L  LK  KAL
Sbjct:   358 VELHVLDVAGNRLHHLPLSLTTLK-LKAL 385

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1C0D6 E1C0D6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 50/158 (31%), Positives = 82/158 (51%)

Query:     3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             +  L N++ L LD N +  LP  LG L+ L  + +  N++  LP+E+  LV L  L +  
Sbjct:   194 LGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENKLEQLPNEVSGLVALTDLLLSQ 253

Query:    63 NMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLI 122
             N+L C+P+ IG L+                ESIG C +L EL   +N++  LP S+  L 
Sbjct:   254 NLLECIPDGIGQLKQLSILKVDQNRLTEVTESIGDCENLSELILTENMLTALPKSLGKLT 313

Query:   123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              L +L ++ N +  +PA +   C  L  +SL +N +++
Sbjct:   314 KLTNLNVDRNRLTSLPAEI-GGCANLNVLSLRDNRLAL 350

GO:0001843 "neural tube closure" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016080 "synaptic vesicle targeting" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0032863 "activation of Rac GTPase activity" evidence=IEA

GO:0034750 "Scrib-APC-beta-catenin complex" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0060561 "apoptotic process involved in morphogenesis" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 211 (79.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 49/160 (30%), Positives = 89/160 (55%)

Query:     1 MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             +++    +I  L L  N ++ LP ++ KL +L+++ L  N++  LP+++G L +L  L +
Sbjct:   369 LDMGSWTSITELNLSTNQLKVLPEDIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDL 428

Query:    61 LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN 120
               N L  +P  IG L+               P SIG+  SL++L+  +N +  +P  I +
Sbjct:   429 EENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGH 488

Query:   121 LIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 159
             L  LKSL LN+N+ +  +P  L   C++L+ +S+ N+P+S
Sbjct:   489 LDSLKSLYLNDNSSLHNLPFELAL-CQSLEIMSIENSPLS 527

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 211 (79.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 49/160 (30%), Positives = 89/160 (55%)

Query:     1 MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             +++    +I  L L  N ++ LP ++ KL +L+++ L  N++  LP+++G L +L  L +
Sbjct:   369 LDMGSWTSITELNLSTNQLKVLPEDIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDL 428

Query:    61 LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN 120
               N L  +P  IG L+               P SIG+  SL++L+  +N +  +P  I +
Sbjct:   429 EENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGH 488

Query:   121 LIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 159
             L  LKSL LN+N+ +  +P  L   C++L+ +S+ N+P+S
Sbjct:   489 LDSLKSLYLNDNSSLHNLPFELAL-CQSLEIMSIENSPLS 527

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

ZFIN|ZDB-GENE-040718-372 lrrc57 "leucine rich repeat containing 57" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 48/160 (30%), Positives = 83/160 (51%)

Query:     2 EISKLI-NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             ++ KL  N++ + L +N IE LP  +G  Q LK  T+  N++TSLP+++G+L +LE L +
Sbjct:    32 DLQKLTANLRTVDLSNNKIEELPAFIGSFQHLKSFTISCNKLTSLPNDIGKLKKLETLIL 91

Query:    61 LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN 120
              GN L  LP +IG L+               P  +G+   L+ L  + N I  +PA +  
Sbjct:    92 NGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDLSKNQIRVVPAEVAE 151

Query:   121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
             L  ++ + LN N I  +   + +  + L+ + L  N + +
Sbjct:   152 LQAIE-INLNQNQISSVTQEVSRTPR-LKVLRLEENCLEL 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-14
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	8e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            +  L N++ L L  N +  LP  L  L +L  + L GN+I+ LP E+  L  LE L + 
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N +  L  ++ +L+NL  L +SNNKL+ LPESIG+  +LE L  ++N I  +  S+ +L
Sbjct: 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSL 276

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 154
            +L+ L L+ N++      +      L+ +   
Sbjct: 277 TNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 67.0 bits (163), Expect = 3e-13
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           NI+ L  + N +  +P  L    +++ M L  NRIT LP+ L     L+ L +  N ++C
Sbjct: 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLPS--ALQSLDLFHNKISC 276

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSL 127
           LPE +     L  L+V +N +++LP  + S   +  L    N +  LP ++     LK+L
Sbjct: 277 LPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSLTALPETLP--PGLKTL 330

Query: 128 CLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
               N +  +PA+L      LQ + +  N I++
Sbjct: 331 EAGENALTSLPASL---PPELQVLDVSKNQITV 360

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQS-LKVMTLDGNRITSLPDELGQLVRLERLSI 60
           E+ +L N+  L LD+N+I  +P  +G L+S LK + L  N+I SLP  L  L  L+ L +
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N L+ LP+ + +L NL  L++S NK+  LP  I    +LEEL  ++N I EL +S+ N
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSN 230

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L +L  L L+NN +  +P   + +   L+ + L NN IS
Sbjct: 231 LKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 50/133 (37%), Positives = 75/133 (56%)

Query: 7   INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT 66
            N++ L L DN IE LP  L  L +LK + L  N ++ LP  L  L  L  L + GN ++
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 67  CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKS 126
            LP  I  L  L  L++SNN +  L  S+ +  +L  L+ ++N + +LP SI NL +L++
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259

Query: 127 LCLNNNNIGQIPA 139
           L L+NN I  I +
Sbjct: 260 LDLSNNQISSISS 272

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLV-RLERLSILGNM 64
           L+ +  L L+ N +      L +L +L  + LD N IT +P  +G L   L+ L +  N 
Sbjct: 92  LLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151

Query: 65  LTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHL 124
           +  LP  + +L NL  L++S N L  LP+ + +  +L  L  + N I +LP  I  L  L
Sbjct: 152 IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Query: 125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           + L L+NN+I ++  + L + K L  + L NN +
Sbjct: 212 EELDLSNNSIIELL-SSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 6   LINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGN 63
           + N++ L L +N +   +P ++G   SLKV+ L GN +   +P+ L  L  LE L++  N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 64  MLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQ-ANDNLIGELPASICN 120
            L   +P  +G +++L  + +  N L   +P  IG   SL  L    +NL G +P+S+ N
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 121 LIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
           L +L+ L L  N + G IP ++    + L ++ L +N +S
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 31/188 (16%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
           EI  L ++  L L  N++   +P +LG L++L+ + L  N+++  +P  +  L +L  L 
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 60  ILGNMLTC-LPETIGSLRNLVLLNV-SNNKLKSLPESIGSCYSLEELQ------------ 105
           +  N L+  +PE +  L+NL +L++ SNN    +P ++ S   L+ LQ            
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 106 -------------ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNI 151
                        + +NL GE+P  +C+  +L  L L +N++ G+IP + L  C++L+ +
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRV 409

Query: 152 SLHNNPIS 159
            L +N  S
Sbjct: 410 RLQDNSFS 417

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)

Query: 25  NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RNLVLLNV 83
           NL  L  L  + L+ NR+ S   EL +L  L  L +  N +T +P  IG L  NL  L++
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 84  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLK 143
           S+NK++SLP  + +  +L+ L  + N + +LP  + NL +L +L L+ N I  +P   ++
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP-PEIE 206

Query: 144 DCKALQNISLHNNPI 158
              AL+ + L NN I
Sbjct: 207 LLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 68  LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLK 125
           +P  I  LR+L  +N+S N ++ ++P S+GS  SLE L  + N   G +P S+  L  L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 126 SLCLNNNNI-GQIPANL 141
            L LN N++ G++PA L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
           +ISKL ++Q + L  N I   +P +LG + SL+V+ L  N    S+P+ LGQL  L  L+
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 60  ILGNMLTC-LPETIGS-LRNLVLLNVSNN 86
           + GN L+  +P  +G  L +    N ++N
Sbjct: 497 LNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 25/114 (21%)

Query: 22  LPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81
           +P ++ KL+ L+ + L GN                  SI GN    +P ++GS+ +L +L
Sbjct: 434 IPNDISKLRHLQSINLSGN------------------SIRGN----IPPSLGSITSLEVL 471

Query: 82  NVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASI-CNLIHLKSLCLNNN 132
           ++S N    S+PES+G   SL  L  N N L G +PA++   L+H  S    +N
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 45.5 bits (107), Expect = 8e-06
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
            ++ L   +N +  LP +L     L+V+ +  N+IT LP+ L     +  L +  N LT 
Sbjct: 326 GLKTLEAGENALTSLPASLPP--ELQVLDVSKNQITVLPETLPP--TITTLDVSRNALTN 381

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGS 97
           LPE + +   L ++  S N L  LPES+  
Sbjct: 382 LPENLPAA--LQIMQASRNNLVRLPESLPH 409

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 73  GSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLN 130
           GS+ NL  L++SNN L   +P  IGS  SL+ L    N L+G++P S+ NL  L+ L L 
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 131 NNN-IGQIPANLLKDCKALQNISLHNNPIS 159
           +N  +GQIP  L +  K+L+ I L  N +S
Sbjct: 197 SNQLVGQIPRELGQ-MKSLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           EI  L  ++ L L +N I  L  +L  L++L  + L  N++  LP+ +G L  LE L + 
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N ++ +   +GSL NL  L++S N L +    I     L EL   + L+      +   
Sbjct: 264 NNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELL-LNLLLTLKALELKLN 321

Query: 122 IHLKSLCLNNNNIGQIPANLL 142
             L +  + +N     P  L 
Sbjct: 322 SILLNNNILSNGETSSPEALS 342

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 8   NIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNML 65
           N+ +L+L  N +E  +P +LG  +SL+ + L  N  +  LP E  +L  +  L I  N L
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 66  TCLPETIG-SLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDNLI-GELPASICNLI 122
                +    + +L +L+++ NK    LP+S GS   LE L  + N   G +P  + +L 
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 123 HLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
            L  L L+ N + G+IP  L   CK L ++ L +N +S
Sbjct: 500 ELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 43/166 (25%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLE----------- 56
           +I  LV+ DN++  LP    +L++L+V    GN++TSLP     L+ L            
Sbjct: 223 HITTLVIPDNNLTSLPALPPELRTLEV---SGNQLTSLPVLPPGLLELSIFSNPLTHLPA 279

Query: 57  ------RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP----------------ES 94
                 +L I GN LT LP     L+    L+VS+N+L SLP                 S
Sbjct: 280 LPSGLCKLWIFGNQLTSLPVLPPGLQE---LSVSDNQLASLPALPSELCKLWAYNNQLTS 336

Query: 95  IGSCYS-LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 139
           + +  S L+EL  +DN +  LP     L  L +    NN +  +PA
Sbjct: 337 LPTLPSGLQELSVSDNQLASLPTLPSELYKLWAY---NNRLTSLPA 379

Length = 788

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 11/103 (10%)

Query: 57  RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 116
           RL ILG  LT +P  I     +  L + NN+LKSLPE++    +++ L AN N +  +PA
Sbjct: 184 RLKILG--LTTIPACIP--EQITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPA 237

Query: 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           ++ + I    + L+ N I ++P  L     ALQ++ L +N IS
Sbjct: 238 TLPDTIQE--MELSINRITELPERL---PSALQSLDLFHNKIS 275

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 100 SLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           +L+ L  ++N +  +P      L +LK L L+ NN+  I         +L+++ L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 2/155 (1%)

Query: 7   INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT 66
           +N   L L  N +  LP +L +L SL +++  G       + L  L+ L  L +  N L 
Sbjct: 47  VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106

Query: 67  CLPETIGSLRNLVLLNVSNNKLKSLPESIG-SCYSLEELQANDNLIGELPASICNLIHLK 125
                +  L NL  L++ NN +  +P  IG    +L+EL  +DN I  LP+ + NL +LK
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK 166

Query: 126 SLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           +L L+ N++  +P  LL +   L N+ L  N IS 
Sbjct: 167 NLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISD 200

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 9   IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
           +Q L + DN +  LP    +L  L       NR+TSLP        L+ L + GN LT L
Sbjct: 344 LQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLP---ALPSGLKELIVSGNRLTSL 397

Query: 69  PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKS 126
           P     L+ L+   VS N+L SLP       SL   +   N +  LP S   LIHL S
Sbjct: 398 PVLPSELKELM---VSGNRLTSLPMLPSGLLSLSVYR---NQLTRLPES---LIHLSS 446

Length = 788

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 27/128 (21%)

Query: 32  LKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK 89
           L+ + L  N+ + ++P +LG L  L +L +  N L+  +P+ + S + LV L++S+N+L 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 90  SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKAL 148
                                 G++PAS   +  L  L L+ N + G+IP NL      +
Sbjct: 537 ----------------------GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 149 Q-NISLHN 155
           Q NIS HN
Sbjct: 575 QVNIS-HN 581

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 17  NHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLR 76
           N +  LPV    LQ L V     N++ SLP    +L +L   +   N LT LP     L+
Sbjct: 292 NQLTSLPVLPPGLQELSV---SDNQLASLPALPSELCKLWAYN---NQLTSLPTLPSGLQ 345

Query: 77  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQ 136
            L   +VS+N+L SLP      Y   +L A +N +  LPA       LK L ++ N +  
Sbjct: 346 EL---SVSDNQLASLPTLPSELY---KLWAYNNRLTSLPALPSG---LKELIVSGNRLTS 396

Query: 137 IP 138
           +P
Sbjct: 397 LP 398

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 9   IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
           ++ L++  N +  LPV   +L+ L V    GNR+TSLP     L+ L   S+  N LT L
Sbjct: 384 LKELIVSGNRLTSLPVLPSELKELMV---SGNRLTSLPMLPSGLLSL---SVYRNQLTRL 437

Query: 69  PETIGSLRNLVLLNVSNNKL 88
           PE++  L +   +N+  N L
Sbjct: 438 PESLIHLSSETTVNLEGNPL 457

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.53
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.14
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
PLN03150	623	hypothetical protein; Provisional	98.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PLN03150	623	hypothetical protein; Provisional	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.49
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.02
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.17
KOG4308	478	consensus LRR-containing protein [Function unknown	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.42
smart00370	26	LRR Leucine-rich repeats, outliers.	94.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.16
KOG4308	478	consensus LRR-containing protein [Function unknown	93.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.78
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.36
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.32
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.43
KOG4341	483	consensus F-box protein containing LRR [General fu	83.31
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.42
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.49

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=7.1e-22  Score=132.46  Aligned_cols=157  Identities=30%  Similarity=0.504  Sum_probs=145.1

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +.++..++.|-+++|.++.+|+.++.+.+|+.+++.+|++.++|.+++.+++|+.|.++.|++..+|.+|+.++.|+.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCC--cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLK--SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++.|++.  .+|..|+.+..|+.|.++.|.+..+|...+.+++|+.|.+..|.+-++|++ ++.+..|++|.+++|.++.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence            9999988  578889999999999999999999999999999999999999999999987 4778889999999998774

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=3.7e-19  Score=138.94  Aligned_cols=175  Identities=25%  Similarity=0.312  Sum_probs=132.8

Q ss_pred             cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLV   79 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~   79 (201)
                      |..|.+++.|+++.|.++.+ ..++.+++.|+.|++++|.+..+ ++++.-+++|++|+++.|++++++ ..|..+..|+
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            45566677777777777765 44566677788888888877755 456667788888888888888874 4677788888


Q ss_pred             EEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCC----cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecc
Q 028942           80 LLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG----ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH  154 (201)
Q Consensus        80 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~  154 (201)
                      +|++++|.+..+.. .+..+.+|+.|++.+|.++    +-...+..++.|+.|++.+|++..+++..|.++.+|++|++.
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence            88888888887644 4566788999999999776    333457779999999999999999999999999999999999


Q ss_pred             cCCCChhhhccccChhHHHHHHhh
Q 028942          155 NNPISMDQFQQMEGFEEFEARRRK  178 (201)
Q Consensus       155 ~n~l~~~~~~~l~~~~~l~~~~~~  178 (201)
                      +|+|-...+..+..+ +|+.....
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhc
Confidence            999865544454444 55544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-17  Score=130.84  Aligned_cols=173  Identities=24%  Similarity=0.348  Sum_probs=148.5

Q ss_pred             ccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCC
Q 028942            9 IQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNN   86 (201)
Q Consensus         9 L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~   86 (201)
                      .+.|++++|.+..+. ..|.++++|+.+.+.+|.++.+|.......+++.|++.+|.|+++ ...+..++.|+++|++.|
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            346899999999874 457899999999999999999998777777899999999999988 567888999999999999


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC---hh
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS---MD  161 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~---~~  161 (201)
                      .|++++. .+..-.+++.|++++|.|+.+.. .+..+.+|..|.|++|.++.+|..+|..+++|+.|++..|.|.   ..
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            9998875 55666889999999999998853 5667778999999999999999999999999999999999886   56


Q ss_pred             hhccccChhHHHHHHhhccc
Q 028942          162 QFQQMEGFEEFEARRRKKFD  181 (201)
Q Consensus       162 ~~~~l~~~~~l~~~~~~~~~  181 (201)
                      .++.+.+++.++..++..++
T Consensus       240 tFqgL~Sl~nlklqrN~I~k  259 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISK  259 (873)
T ss_pred             hhcCchhhhhhhhhhcCccc
Confidence            77778888877777766653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=8.6e-17  Score=138.67  Aligned_cols=155  Identities=30%  Similarity=0.446  Sum_probs=71.7

Q ss_pred             ccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCE
Q 028942            4 SKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVL   80 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~   80 (201)
                      .++++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+.+|++|++++|.+.. +|..+..+++|++
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence            34445555555555443 33444444555555555554443 234444444555555555554442 3444445555555


Q ss_pred             EEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942           81 LNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus        81 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      |++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.......+..+++|+.|++.+|.+
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            555555443 23444444455555555554443 3334444444455555554444322222234444444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=1.8e-18  Score=136.65  Aligned_cols=179  Identities=26%  Similarity=0.444  Sum_probs=150.7

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc--ccchhhhcCCCCCE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNLVL   80 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~   80 (201)
                      +..|++++||.+....+..+|..++.+.+|+.|.+.+|++..+...++.+++|+.+.+..|++.  .+|+.+..+..|.+
T Consensus        28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence            3456677777777777777888888888888888888888777777788888888888888876  57888999999999


Q ss_pred             EEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           81 LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        81 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      |++++|++.++|..+.+-+++-.|++++|.|..+|.. +-++..|-.|+|++|.+..+|+. .+.+..|+.|++++||+.
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence            9999999999999998889999999999999999875 45677888999999999999998 478899999999999998


Q ss_pred             hhhhccccChhHHHHHHhhcccc
Q 028942          160 MDQFQQMEGFEEFEARRRKKFDK  182 (201)
Q Consensus       160 ~~~~~~l~~~~~l~~~~~~~~~~  182 (201)
                      -.....++++..|........+.
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccc
Confidence            88888888888888777665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.68  E-value=3.1e-16  Score=135.30  Aligned_cols=158  Identities=33%  Similarity=0.480  Sum_probs=106.8

Q ss_pred             ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCC
Q 028942            2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNL   78 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L   78 (201)
                      .+.++++|+.|++++|.+. .+|..+..+.+|+.+++++|.+. .+|..+..+++|++|++++|.+.. +|..+..+.+|
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence            3567778888888888776 45777777788888888877776 557777777777788777777663 46667777777


Q ss_pred             CEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           79 VLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        79 ~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      ++|++.+|.+. .+|..+..+.+|+.|++++|.++ .+|..+..+++|+.|++++|.+.......+..+++|+.|++.+|
T Consensus       263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence            77777777665 44556666677777777776665 45555566666666666666664333333555666666666666


Q ss_pred             CCC
Q 028942          157 PIS  159 (201)
Q Consensus       157 ~l~  159 (201)
                      .+.
T Consensus       343 ~l~  345 (968)
T PLN00113        343 KFS  345 (968)
T ss_pred             CCc
Confidence            554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-18  Score=116.58  Aligned_cols=158  Identities=29%  Similarity=0.476  Sum_probs=140.9

Q ss_pred             CccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc--ccchhhhcCCCC
Q 028942            1 MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNL   78 (201)
Q Consensus         1 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L   78 (201)
                      +.++.+.+|+.|++.+|+++.+|.+++.+++|+.+++.-|.+..+|.+|..++.|..||+.+|.+.  .+|..|..+..|
T Consensus        50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999987  478889999999


Q ss_pred             CEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCc---cCCeEeccc
Q 028942           79 VLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCK---ALQNISLHN  155 (201)
Q Consensus        79 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---~L~~l~l~~  155 (201)
                      +.|.++.|.+..+|+.+..+++|+.|.+..|.+-++|..++.++.|+.|++++|.++-+|+++ .++.   +-+...+.+
T Consensus       130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel-~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL-ANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh-hhhhhhhhHHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999999999888763 3322   223456677


Q ss_pred             CCCC
Q 028942          156 NPIS  159 (201)
Q Consensus       156 n~l~  159 (201)
                      |++-
T Consensus       209 NPwv  212 (264)
T KOG0617|consen  209 NPWV  212 (264)
T ss_pred             CCCC
Confidence            7654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=2.3e-17  Score=130.44  Aligned_cols=83  Identities=25%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             CCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           76 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      .+|..++++.|.+..+|.++..+++|+.|++++|.|+.+......+.++++|++++|+++.+|.. +..++.|+.|...+
T Consensus       222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANN  300 (1255)
T ss_pred             hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhcc
Confidence            33333344444444444444444444444444444444443344444444444444544444443 24444455555555


Q ss_pred             CCCC
Q 028942          156 NPIS  159 (201)
Q Consensus       156 n~l~  159 (201)
                      |.+.
T Consensus       301 NkL~  304 (1255)
T KOG0444|consen  301 NKLT  304 (1255)
T ss_pred             Cccc
Confidence            5544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=3.9e-17  Score=122.69  Aligned_cols=154  Identities=34%  Similarity=0.603  Sum_probs=89.4

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+..++.++-.+|++..+|..+..+.++..+++.+|.+..+|.....|..|++++...|-+..+|+.++.+.+|+.|+
T Consensus       133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY  212 (565)
T ss_pred             HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence            33444555555555666666666666666666666666666665555556667777776666666776666666666666


Q ss_pred             eeCCCCCcCcccccCC------------------------CCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC
Q 028942           83 VSNNKLKSLPESIGSC------------------------YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP  138 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~------------------------~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~  138 (201)
                      +..|.+..+| .|..|                        +++..|++..|.++++|..+.-+.+|.+||+++|.++.+|
T Consensus       213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  213 LRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             hhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence            6666666554 23444                        4445555555555555555555555555555555555555


Q ss_pred             hhhhhcCccCCeEecccCCCC
Q 028942          139 ANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       139 ~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      .. ++++ +|+.+.+.+||+.
T Consensus       292 ~s-Lgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  292 YS-LGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cc-cccc-eeeehhhcCCchH
Confidence            43 3444 5555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.55  E-value=2.8e-17  Score=123.47  Aligned_cols=156  Identities=33%  Similarity=0.505  Sum_probs=112.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +.++..+..++++.|.+..+++.++.+..+..++..+|++..+|.++..+.++..+++.+|.+..+|+..-.+..|+.++
T Consensus       110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld  189 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD  189 (565)
T ss_pred             HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence            44556667777777777777777777778888888888888888777777788888888888888777666688889999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ...|.++.+|+.++.+.+|..|++..|.+..+| .+..|..|..++++.|.+..+|++...+++++..+|+..|++.
T Consensus       190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  190 CNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             cchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence            999999999998888999998888888887766 3444555555555555554444444444444445555555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.53  E-value=2.4e-16  Score=122.96  Aligned_cols=154  Identities=34%  Similarity=0.600  Sum_probs=135.3

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV   83 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   83 (201)
                      +.+..|+.+.+..|.+..+|..+..+..|++++++.|+++.+|..++.++ |+.|-+++|+++.+|..++....|..++.
T Consensus        95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen   95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence            34455666777778888888888888999999999999999998888777 88999999999999888888888999999


Q ss_pred             eCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +.|.+..+|..+..+.+|+.+++.+|.+..+|..+..++ |..||+++|.+..+|.. |..+.+|++|-|++|+++.
T Consensus       174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence            999999999889999999999999999999999888555 88999999999999987 7999999999999999974

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.48  E-value=8.2e-14  Score=96.05  Aligned_cols=124  Identities=28%  Similarity=0.423  Sum_probs=44.6

Q ss_pred             CCCCcEEeccCCCCccCchhhh-CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCceEEc
Q 028942           29 LQSLKVMTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQA  106 (201)
Q Consensus        29 l~~L~~l~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l  106 (201)
                      ...++.|++.++.++.+. .+. .+.+++.|++++|.++.+ +++..+..|++|++++|.++.+...+ ..+++|+.|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            345666777777666553 232 356667777777777766 34566677777777777777664433 34667777777


Q ss_pred             CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecc
Q 028942          107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH  154 (201)
Q Consensus       107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~  154 (201)
                      ++|.|.++.  ..+..++.|+.|++.+|++...+.   .++..+|+|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777766543  345667778888888888755443   467778888877753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.46  E-value=1.2e-13  Score=95.26  Aligned_cols=104  Identities=29%  Similarity=0.506  Sum_probs=23.3

Q ss_pred             CCCEEEecCCcCcccchhhh-cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhh-hCCCccceEEccC
Q 028942           54 RLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNN  131 (201)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L~l~~  131 (201)
                      .+++|++.+|.++.+. .+. .+.+|+.|++++|.+..+. .+..++.|+.|++++|.++++...+ ..+++|+.|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            3455555555544442 222 2344555555555554442 2334445555555555555443322 2344455555555


Q ss_pred             CcCCccCh-hhhhcCccCCeEecccCCCC
Q 028942          132 NNIGQIPA-NLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       132 ~~l~~~~~-~~~~~~~~L~~l~l~~n~l~  159 (201)
                      |.|..+.. ..+..+++|+.|++.+||+.
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55433222 22344455555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=1e-12  Score=109.27  Aligned_cols=120  Identities=31%  Similarity=0.538  Sum_probs=61.2

Q ss_pred             CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCccccc--------------
Q 028942           31 SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG--------------   96 (201)
Q Consensus        31 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------   96 (201)
                      +|+.|++++|.+..+|..+.  ..|+.|++++|+++.+|..+.  .+|+.|++++|.+..+|..+.              
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT  317 (754)
T ss_pred             cccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccc
Confidence            34444444444444443321  245555555555554443322  245555555555544332110              


Q ss_pred             -----CCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           97 -----SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        97 -----~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                           ..++|+.|++++|.++.+|..+  .++|+.|++++|.+..+|..+   .+.|+.|++.+|.++
T Consensus       318 ~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        318 ALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALT  380 (754)
T ss_pred             cCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCC
Confidence                 1134555555555555554433  246777777777776666543   246777777777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.43  E-value=6.5e-13  Score=110.15  Aligned_cols=106  Identities=31%  Similarity=0.390  Sum_probs=73.5

Q ss_pred             CCCEEEecCCcCcccchhhh-----------------cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCCh
Q 028942           54 RLERLSILGNMLTCLPETIG-----------------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA  116 (201)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  116 (201)
                      .|+.|++++|+++.+|....                 ...+|+.|++++|.+..+|..   ...|+.|++++|.++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM  419 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence            46666666666665543111                 113466667777766666543   2467778888888877764


Q ss_pred             hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhccc
Q 028942          117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       117 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l  166 (201)
                      .   ...|+.|++++|.+..+|.. +..++.|..+++++|+++......+
T Consensus       420 l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        420 L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence            3   34577889999999888876 5788999999999999997665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=4.7e-13  Score=111.19  Aligned_cols=151  Identities=29%  Similarity=0.421  Sum_probs=100.4

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhh-------------------CcCCCCEEEecCCcCccc
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELG-------------------QLVRLERLSILGNMLTCL   68 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~-------------------~l~~L~~L~l~~~~~~~~   68 (201)
                      +|+.|++++|.+..+|..+.  .+|+.|++++|.++.+|..+.                   ..++|+.|++++|.++.+
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL  340 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC
Confidence            67888888888887776553  478888888887776553221                   113456666666666666


Q ss_pred             chhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChh---hhhcC
Q 028942           69 PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN---LLKDC  145 (201)
Q Consensus        69 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~  145 (201)
                      |..+.  ++|+.|++++|.+..+|..+  .+.|+.|++++|.++.+|..+.  ..|+.|++++|.+..+|..   ....+
T Consensus       341 P~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~  414 (754)
T PRK15370        341 PASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEG  414 (754)
T ss_pred             Chhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcC
Confidence            54432  46777777777777666543  3567777887777777776543  3577778888888776653   23345


Q ss_pred             ccCCeEecccCCCChhhhccc
Q 028942          146 KALQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       146 ~~L~~l~l~~n~l~~~~~~~l  166 (201)
                      +.+..+++.+|+++...+..+
T Consensus       415 ~~l~~L~L~~Npls~~tl~~L  435 (754)
T PRK15370        415 PQPTRIIVEYNPFSERTIQNM  435 (754)
T ss_pred             CCccEEEeeCCCccHHHHHHH
Confidence            778889999999986544443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=6.2e-14  Score=114.94  Aligned_cols=168  Identities=27%  Similarity=0.440  Sum_probs=118.2

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCC
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK   87 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~   87 (201)
                      ++++++++.|.+..+|.....+.+++.+...+|.++.+|..+....+|+.|.+..|.+..+|+...+..+|++|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            56677778888888887778888888888888888877777777777777777777777777777777788888888877


Q ss_pred             CCcCccccc--------------------------CCCCCceEEcCCCcCCc-CChhhhCCCccceEEccCCcCCccChh
Q 028942           88 LKSLPESIG--------------------------SCYSLEELQANDNLIGE-LPASICNLIHLKSLCLNNNNIGQIPAN  140 (201)
Q Consensus        88 ~~~~~~~~~--------------------------~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~  140 (201)
                      +..+|..+.                          ..+.|+.|.+.+|.+++ .-..+.+.+.|+.|+|++|.+.++|+.
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            765554221                          11233444455555552 223456677888888888888888887


Q ss_pred             hhhcCccCCeEecccCCCC--hhhhccccChhHHHHH
Q 028942          141 LLKDCKALQNISLHNNPIS--MDQFQQMEGFEEFEAR  175 (201)
Q Consensus       141 ~~~~~~~L~~l~l~~n~l~--~~~~~~l~~~~~l~~~  175 (201)
                      .+..+..|++|++++|+++  .+.+..+..+..|.+-
T Consensus       402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            7888888888888888876  3444455555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-13  Score=113.12  Aligned_cols=150  Identities=31%  Similarity=0.384  Sum_probs=121.5

Q ss_pred             CCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942            6 LINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV   83 (201)
Q Consensus         6 l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   83 (201)
                      +..|+.|++.+|.++ ..-+.+.++.+|+.|++++|.+..+|.. +.++..|++|++++|+++.+|..+..+..|++|..
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            345667888888888 3455677789999999999999999765 57889999999999999999988899999999999


Q ss_pred             eCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhh-CCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      .+|.+..+| .+...++|+.+|++.|.++.+--... .++.|++|++++|.-..+....+..+.++...++.-+
T Consensus       438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            999998888 67889999999999998885532222 2388999999999876666666777777777776655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=1.8e-12  Score=98.62  Aligned_cols=155  Identities=30%  Similarity=0.350  Sum_probs=71.9

Q ss_pred             cCCCccEEecCCCcCcc-cCccccCCC---CCcEEeccCCCCcc-----CchhhhCc-CCCCEEEecCCcCcc-----cc
Q 028942            5 KLINIQRLVLDDNHIER-LPVNLGKLQ---SLKVMTLDGNRITS-----LPDELGQL-VRLERLSILGNMLTC-----LP   69 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~-l~~~~~~l~---~L~~l~l~~~~l~~-----~~~~~~~l-~~L~~L~l~~~~~~~-----~~   69 (201)
                      .+++|+.|++++|.+.. .+..+..+.   +|+.+++++|.+..     +...+..+ +.|+.|++++|.++.     ++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            34556666666655542 222222222   26666665555541     12233334 555666666665551     22


Q ss_pred             hhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccCh
Q 028942           70 ETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPA  139 (201)
Q Consensus        70 ~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~  139 (201)
                      ..+..+..|++|++.+|.+..     ++..+...+.|+.|++++|.++..     ...+..++.|+.|++++|.+.....
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            233444556666665555541     122233344566666665555421     2233444556666666555532111


Q ss_pred             -hhhh----cCccCCeEecccCCCC
Q 028942          140 -NLLK----DCKALQNISLHNNPIS  159 (201)
Q Consensus       140 -~~~~----~~~~L~~l~l~~n~l~  159 (201)
                       .+..    ..+.|+++++.+|.++
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCC
Confidence             1111    1245555666555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=8.9e-12  Score=94.85  Aligned_cols=159  Identities=29%  Similarity=0.355  Sum_probs=119.1

Q ss_pred             CCccEEecCCCcCcc-----cCccccCC-CCCcEEeccCCCCc-----cCchhhhCcCCCCEEEecCCcCcc-----cch
Q 028942            7 INIQRLVLDDNHIER-----LPVNLGKL-QSLKVMTLDGNRIT-----SLPDELGQLVRLERLSILGNMLTC-----LPE   70 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~l~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~   70 (201)
                      ++|+.|++++|.+..     +...+..+ ++|+.+++++|.++     .++..+..+..+++|++++|.++.     ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            459999999998872     34456667 89999999999988     334456677889999999998873     344


Q ss_pred             hhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcCC--hhhh----CCCccceEEccCCcCCccC-
Q 028942           71 TIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGELP--ASIC----NLIHLKSLCLNNNNIGQIP-  138 (201)
Q Consensus        71 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~----~~~~L~~L~l~~~~l~~~~-  138 (201)
                      .+...++|+.|++++|.+..     +...+..+++|+.|++++|.+++..  ....    ..+.|+.|++++|.++... 
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            55666799999999998862     3445667899999999999888421  1111    2478999999999985221 


Q ss_pred             ---hhhhhcCccCCeEecccCCCChhhhcc
Q 028942          139 ---ANLLKDCKALQNISLHNNPISMDQFQQ  165 (201)
Q Consensus       139 ---~~~~~~~~~L~~l~l~~n~l~~~~~~~  165 (201)
                         ...+..+++|+.+++++|.++.++...
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence               123566688999999999999775443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.27  E-value=2.2e-12  Score=94.37  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=80.8

Q ss_pred             cCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccC
Q 028942           52 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN  131 (201)
Q Consensus        52 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~  131 (201)
                      |..|.++|+++|.++.+..+..-.+.++.|+++.|.+..+.. +..+++|+.|++++|.++.+......+.+.+.|.++.
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            566778888888877777777777778888888887776644 6677788888888887777666555566667777777


Q ss_pred             CcCCccChhhhhcCccCCeEecccCCCC-hhhhccccChhHHH
Q 028942          132 NNIGQIPANLLKDCKALQNISLHNNPIS-MDQFQQMEGFEEFE  173 (201)
Q Consensus       132 ~~l~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~l~~~~~l~  173 (201)
                      |.+.++..  +..+-+|..|++.+|.|+ .+.++.+-++++|.
T Consensus       362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  362 NKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             hhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHH
Confidence            77655543  355566777777777765 34444444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.27  E-value=2.2e-13  Score=102.45  Aligned_cols=63  Identities=21%  Similarity=0.355  Sum_probs=33.1

Q ss_pred             CCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           97 SCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        97 ~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      .+++|+.+++++|.++.+. .++.....++.|.|..|.+..+...+|.++..|+.|++.+|.|+
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            4456666666666666553 23344444444444444444444444555555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=6e-12  Score=98.69  Aligned_cols=151  Identities=38%  Similarity=0.560  Sum_probs=92.8

Q ss_pred             CCccEEecCCCcCcccCccccCCC-CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQ-SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN   85 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   85 (201)
                      +.++.+.+.++.+..+++....+. +|+.++++.|.+..+|..+..++.|+.|+++.|++..+|........|+.+++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            445566666666666666555553 6666666666666665555566666666666666666655444555666666666


Q ss_pred             CCCCcCcccccCCCCCceEEcC-----------------------CCcCCcCChhhhCCCccceEEccCCcCCccChhhh
Q 028942           86 NKLKSLPESIGSCYSLEELQAN-----------------------DNLIGELPASICNLIHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~-----------------------~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  142 (201)
                      |.+..+|........|..+.++                       .|.+..++..++.++.++.|++++|.+..++.  +
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~  273 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--L  273 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--c
Confidence            6666555433333334444444                       44444444555666677888888888877766  5


Q ss_pred             hcCccCCeEecccCCCC
Q 028942          143 KDCKALQNISLHNNPIS  159 (201)
Q Consensus       143 ~~~~~L~~l~l~~n~l~  159 (201)
                      ....+++.++++++.+.
T Consensus       274 ~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         274 GSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccCccCEEeccCcccc
Confidence            66777888888877654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.25  E-value=4.4e-11  Score=99.45  Aligned_cols=95  Identities=39%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCC
Q 028942            9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL   88 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~   88 (201)
                      |+.|.+.+|.++.+|..   .++|+.|++++|.++.+|..   .+.|+.|++++|.++.+|..+   .+|..|++.+|.+
T Consensus       224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~L  294 (788)
T PRK15387        224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQL  294 (788)
T ss_pred             CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcc
Confidence            44444444444444421   24455555555555544321   123444444444443333211   2344444555544


Q ss_pred             CcCcccccCCCCCceEEcCCCcCCcCC
Q 028942           89 KSLPESIGSCYSLEELQANDNLIGELP  115 (201)
Q Consensus        89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~  115 (201)
                      ..+|..   .+.|+.|++++|.++.+|
T Consensus       295 t~LP~~---p~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        295 TSLPVL---PPGLQELSVSDNQLASLP  318 (788)
T ss_pred             cccccc---ccccceeECCCCccccCC
Confidence            444331   244556666665555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=3.2e-13  Score=105.78  Aligned_cols=148  Identities=32%  Similarity=0.447  Sum_probs=133.1

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK   89 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   89 (201)
                      ...+++.|.+..+|..+..+..|..+.+..|.+..+|..+..+..|.+++++.|+++.+|..+..++ |+.+.+++|++.
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence            3467788888889988888889999999999999999999999999999999999999988876655 999999999999


Q ss_pred             cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           90 SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      .+|..+....+|..++.+.|.+..+|..++.+.+|+.|.+..|.+..+|.+.. .+ .|..||++.|++..
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~  225 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISY  225 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceee
Confidence            99998888899999999999999999999999999999999999999998853 44 58999999999873

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=1.9e-12  Score=94.65  Aligned_cols=155  Identities=28%  Similarity=0.358  Sum_probs=112.8

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +...+.|+++++++|.|+.+..+..-.|.++.|++++|.+..+.. +..+++|+.||+++|.++.+...-..+.++++|.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            345667888888888888888888778888888888888887743 6778888888888888887744445677888888


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChh---hhhcC-ccCCeEecccC
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPAN---LLKDC-KALQNISLHNN  156 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~-~~L~~l~l~~n  156 (201)
                      +..|.+..+ ..+..+-+|..|++.+|+|..+.  ..++.++-|+++.+.+|++..++..   ++... ..-.++.+++.
T Consensus       359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~  437 (490)
T KOG1259|consen  359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNE  437 (490)
T ss_pred             hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCC
Confidence            888887766 34566777888888888887653  3567788888888888888766652   22222 12345666655


Q ss_pred             CCC
Q 028942          157 PIS  159 (201)
Q Consensus       157 ~l~  159 (201)
                      +-.
T Consensus       438 ~~~  440 (490)
T KOG1259|consen  438 PGN  440 (490)
T ss_pred             Ccc
Confidence            543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=2e-11  Score=95.73  Aligned_cols=124  Identities=34%  Similarity=0.467  Sum_probs=102.6

Q ss_pred             EEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcC-CCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC
Q 028942           11 RLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK   89 (201)
Q Consensus        11 ~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   89 (201)
                      .+...++.+..-......+..++.+.+.++.+..++....... .|+.|++++|.+..+|..+..+++|+.|+++.|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4566666654434445556889999999999999988777674 899999999999999878899999999999999999


Q ss_pred             cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcC
Q 028942           90 SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        90 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l  134 (201)
                      .++......+.|+.+++++|.++.+|........|..+.+++|.+
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc
Confidence            998876688999999999999999988665666688888887743

>PLN03210 Resistant to P

Probab=99.14  E-value=3.7e-10  Score=99.18  Aligned_cols=144  Identities=25%  Similarity=0.375  Sum_probs=68.0

Q ss_pred             ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEEeeCCC
Q 028942            9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLNVSNNK   87 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~   87 (201)
                      |+.|.+.++.+..+|..| ...+|+.|++.++.+..+|.++..+++|+.++++++. +..+| .+..+++|++|++.+|.
T Consensus       591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS  668 (1153)
T ss_pred             cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence            333344444444444433 2345555555555555554444455555555555443 23333 24444555555555542


Q ss_pred             -CCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCcC-CccChhhhhcCccCCeEecccCCCC
Q 028942           88 -LKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        88 -~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                       +..+|..+..+++|+.|++++| .++.+|..+ .+++|+.|++++|.. ..+|.    ...+|+.|++.+|.+.
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE  738 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence             3344555555555555555554 344444332 345555555555532 23221    1234566666666543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.13  E-value=5.7e-10  Score=98.02  Aligned_cols=152  Identities=24%  Similarity=0.381  Sum_probs=109.8

Q ss_pred             ccccCCCccEEecCCCcC------c-ccCccccCCC-CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh
Q 028942            2 EISKLINIQRLVLDDNHI------E-RLPVNLGKLQ-SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG   73 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l------~-~l~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   73 (201)
                      .|.+|.+|+.|.+..+..      . .+|..+..++ +|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++.++.
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~  631 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH  631 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence            366788888887754432      1 3566666554 5888888888888887765 45678888888888887777777


Q ss_pred             cCCCCCEEEeeCCC-CCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCc-CCccChhhhhcCccCCe
Q 028942           74 SLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQN  150 (201)
Q Consensus        74 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~  150 (201)
                      .+.+|+.++++++. +..+|. +..+++|+.|++.+| .+..+|..+..+++|+.|++++|. +..+|..+  ++++|+.
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~  708 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYR  708 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCE
Confidence            78888888888764 445554 666788888888876 456777777888888888888764 56676643  6778888


Q ss_pred             EecccCC
Q 028942          151 ISLHNNP  157 (201)
Q Consensus       151 l~l~~n~  157 (201)
                      |++.+|.
T Consensus       709 L~Lsgc~  715 (1153)
T PLN03210        709 LNLSGCS  715 (1153)
T ss_pred             EeCCCCC
Confidence            8887764

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.08  E-value=1.3e-11  Score=93.07  Aligned_cols=79  Identities=32%  Similarity=0.510  Sum_probs=52.8

Q ss_pred             ccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEEEee
Q 028942            9 IQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLLNVS   84 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~   84 (201)
                      ..++.+..|.|+.+|+ +|..+++|+.+++++|.|+.| |.+|.++..+.+|.+-+ |+|+.+|. .|.++..++.|.++
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            3467788888888854 578888888888888888876 67778887766555544 77777653 23344444444444


Q ss_pred             CCC
Q 028942           85 NNK   87 (201)
Q Consensus        85 ~~~   87 (201)
                      -|.
T Consensus       149 an~  151 (498)
T KOG4237|consen  149 ANH  151 (498)
T ss_pred             hhh
Confidence            333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.2e-10  Score=87.50  Aligned_cols=172  Identities=20%  Similarity=0.256  Sum_probs=91.2

Q ss_pred             cCCCccEEecCCCcCcc---cCccccCCCCCcEEeccCCCCccCchh--hhCcCCCCEEEecCCcCcc--cchhhhcCCC
Q 028942            5 KLINIQRLVLDDNHIER---LPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSILGNMLTC--LPETIGSLRN   77 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~---l~~~~~~l~~L~~l~l~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~   77 (201)
                      .|+.++.|++++|=+..   +-....++++|+.|+++.|.+......  ...+++++.|.++.|.++.  +...+..+++
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            35555566666655442   222234556666666666655532111  1234556666666666552  2233344556


Q ss_pred             CCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccC--h----hhhhcCccC
Q 028942           78 LVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIP--A----NLLKDCKAL  148 (201)
Q Consensus        78 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~--~----~~~~~~~~L  148 (201)
                      ++.|++..|....+ ......+..|+.|++++|++-+++  ...+.++.|+.|.++.+.+.++.  +    ......++|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            66666666531111 111233456777777777766554  34566777777777777774432  1    123456778


Q ss_pred             CeEecccCCCC-hhhhccccChhHHHHHH
Q 028942          149 QNISLHNNPIS-MDQFQQMEGFEEFEARR  176 (201)
Q Consensus       149 ~~l~l~~n~l~-~~~~~~l~~~~~l~~~~  176 (201)
                      ++|++..|+|. ..-+..+..++.++.++
T Consensus       304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             eeeecccCccccccccchhhccchhhhhh
Confidence            88888888873 33333444444444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1e-09  Score=62.78  Aligned_cols=60  Identities=35%  Similarity=0.562  Sum_probs=43.2

Q ss_pred             CCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942           99 YSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus        99 ~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      ++|+.|++++|.++.++. .+..+++|++|++++|.+..++..++.++++|+++++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            356677777777776663 566677777777777777777777777777778887777764

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.88  E-value=1.7e-10  Score=75.12  Aligned_cols=110  Identities=22%  Similarity=0.318  Sum_probs=72.0

Q ss_pred             CCcEEeccCCCCccCchhhhC---cCCCCEEEecCCcCcccchhhhc-CCCCCEEEeeCCCCCcCcccccCCCCCceEEc
Q 028942           31 SLKVMTLDGNRITSLPDELGQ---LVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPESIGSCYSLEELQA  106 (201)
Q Consensus        31 ~L~~l~l~~~~l~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  106 (201)
                      .+..++++.|++..+++....   ...|...++++|.+..+|+.|.. .+.++++++.+|.++.+|..+..++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            344566677776666555433   33455667777777777766643 34667777777777777766777777777777


Q ss_pred             CCCcCCcCChhhhCCCccceEEccCCcCCccChh
Q 028942          107 NDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN  140 (201)
Q Consensus       107 ~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  140 (201)
                      +.|++...|..+..+.++..|+..+|.+.+++-.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            7777776666555566666777777776666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.86  E-value=1.2e-09  Score=81.30  Aligned_cols=160  Identities=23%  Similarity=0.254  Sum_probs=106.7

Q ss_pred             cccCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccCch--------------hhhCcCCCCEEEecCC
Q 028942            3 ISKLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSLPD--------------ELGQLVRLERLSILGN   63 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~~~--------------~~~~l~~L~~L~l~~~   63 (201)
                      +.++++|+.+++++|.|..     +...+..+..|+.|.+.+|.+.....              ....-+.|+.+..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4567788889999988762     23335667888888888888773211              1122356888888888


Q ss_pred             cCccc-----chhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCc-----CChhhhCCCccceEE
Q 028942           64 MLTCL-----PETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLC  128 (201)
Q Consensus        64 ~~~~~-----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~  128 (201)
                      ++..-     ...+...+.|+.+.+..|.|..     +...+..++.|+.|++..|.++.     +...+..|+.|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            76542     2455666778888888887651     23456778888888888887762     334566777888888


Q ss_pred             ccCCcCCccC-----hhhhhcCccCCeEecccCCCChhh
Q 028942          129 LNNNNIGQIP-----ANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       129 l~~~~l~~~~-----~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      ++.|.+..-.     ..+....++|+.+.+.+|.|+.++
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            8888774332     233445677888888888777543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=5.4e-09  Score=59.70  Aligned_cols=57  Identities=28%  Similarity=0.529  Sum_probs=33.7

Q ss_pred             CccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCc
Q 028942            8 NIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNM   64 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~   64 (201)
                      +|++|++++|.+..+|. .|..+++|+.+++++|.+..++. .+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666543 45566666666666666665532 34556666666666554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=6.4e-10  Score=85.03  Aligned_cols=156  Identities=23%  Similarity=0.185  Sum_probs=114.8

Q ss_pred             cCCCccEEecCCCcCcccC--ccccCCCCCcEEeccCCCCccC---chhhhCcCCCCEEEecCCcCcccch--hhhcCCC
Q 028942            5 KLINIQRLVLDDNHIERLP--VNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLSILGNMLTCLPE--TIGSLRN   77 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~   77 (201)
                      ++.+|+++.+.++.+...+  .....+++++.|+++.|-+...   ..-...+++|+.|.++.|++.....  .-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4677888888888776554  3567789999999999876632   3334678999999999998774321  1235678


Q ss_pred             CCEEEeeCCCCC--cCcccccCCCCCceEEcCCCc-CCcCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEec
Q 028942           78 LVLLNVSNNKLK--SLPESIGSCYSLEELQANDNL-IGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISL  153 (201)
Q Consensus        78 L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l  153 (201)
                      ++.|.++.|.++  .+......+|++..|.+..|. +..-......+..|+.|+|++|++...+. .....++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            899999999888  455667788999999999984 33222223446678999999999865553 34577888999999


Q ss_pred             ccCCCCh
Q 028942          154 HNNPISM  160 (201)
Q Consensus       154 ~~n~l~~  160 (201)
                      +.+.+..
T Consensus       279 s~tgi~s  285 (505)
T KOG3207|consen  279 SSTGIAS  285 (505)
T ss_pred             cccCcch
Confidence            9888764

>PLN03150 hypothetical protein; Provisional

Probab=98.81  E-value=2.9e-08  Score=82.09  Aligned_cols=104  Identities=31%  Similarity=0.472  Sum_probs=60.7

Q ss_pred             CCEEEecCCcCcc-cchhhhcCCCCCEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccC
Q 028942           55 LERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNN  131 (201)
Q Consensus        55 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~  131 (201)
                      ++.|++++|.+.. +|..+..+.+|+.|++++|.+. .+|..+..++.|+.|++++|.++ .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4556666666553 4555666666666666666665 45555666666666666666665 4556666666666666666


Q ss_pred             CcC-CccChhhhhcCccCCeEecccCCC
Q 028942          132 NNI-GQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus       132 ~~l-~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      |.+ ..+|..+.....++..+++.+|+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            666 345544322233445555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.78  E-value=1.8e-10  Score=93.24  Aligned_cols=128  Identities=26%  Similarity=0.289  Sum_probs=69.6

Q ss_pred             CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcC
Q 028942           32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI  111 (201)
Q Consensus        32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i  111 (201)
                      |...++++|.+..+..++.-++.++.|++++|+++.+. .+..++.|++||++.|.+..+|..-..-.+|..|++.+|.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence            33444445555544444555556666666666666553 45556666666666666665554322233366666666666


Q ss_pred             CcCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCChh
Q 028942          112 GELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       112 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +.+-. +.++.+|+.||++.|-+..... .-+..+..|..|.+.+||+.|.
T Consensus       245 ~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  245 TTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             Hhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            55522 3455566666666666532221 1133445566666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=6.8e-10  Score=87.63  Aligned_cols=108  Identities=35%  Similarity=0.517  Sum_probs=59.6

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++++.+++.+|.+..+...+..+++|+.+++++|.|+.+ ..+..+..|+.|++.+|.+..+ .++..+..|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhc-cCCccchhhhccc
Confidence            3445566666666666665554455566666666666666655 2234444566666666666555 2233355566666


Q ss_pred             eeCCCCCcCccc-ccCCCCCceEEcCCCcCC
Q 028942           83 VSNNKLKSLPES-IGSCYSLEELQANDNLIG  112 (201)
Q Consensus        83 l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~  112 (201)
                      +++|.+..+... ...+..++.+.+.+|.+.
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            666665554332 344555555555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.74  E-value=5.4e-08  Score=80.53  Aligned_cols=104  Identities=28%  Similarity=0.517  Sum_probs=76.6

Q ss_pred             CCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCCCEEEeeCCCCC-cCcccccCCCCCceEEcC
Q 028942           31 SLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQAN  107 (201)
Q Consensus        31 ~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~  107 (201)
                      .++.|+++++.+. .+|..+..+++|+.|++++|.+. .+|..+..+.+|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3667788888777 56777778888888888888877 46777778888888888888877 567777788888888888


Q ss_pred             CCcCC-cCChhhhCC-CccceEEccCCcC
Q 028942          108 DNLIG-ELPASICNL-IHLKSLCLNNNNI  134 (201)
Q Consensus       108 ~n~i~-~~~~~~~~~-~~L~~L~l~~~~l  134 (201)
                      +|.++ .+|..+... ..+..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            88776 666665542 3456677776653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.8e-09  Score=85.20  Aligned_cols=130  Identities=32%  Similarity=0.419  Sum_probs=103.9

Q ss_pred             CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942            6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN   85 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   85 (201)
                      +..++.+.+..|.+..+-..+..+.++..+++..|.+..+...+..+++|+.|++++|.|+.+ .++..+..|+.|++.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            445556667777777655567778999999999999998865577899999999999999988 4566777799999999


Q ss_pred             CCCCcCcccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCcc
Q 028942           86 NKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQI  137 (201)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~  137 (201)
                      |.+..+.. +..+..|+.+++++|.++.+... ...+..++.+++.+|.+..+
T Consensus       150 N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  150 NLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            99988744 45588999999999999988653 46677888888888887544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.69  E-value=7.6e-09  Score=77.16  Aligned_cols=158  Identities=20%  Similarity=0.242  Sum_probs=105.7

Q ss_pred             ccCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCc----cCc-------hhhhCcCCCCEEEecCCcCcc
Q 028942            4 SKLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRIT----SLP-------DELGQLVRLERLSILGNMLTC   67 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~----~~~-------~~~~~l~~L~~L~l~~~~~~~   67 (201)
                      ..+..++.++++||.|.     .+...+...+.|+..+++.-...    ++|       .++..+++|+++++|+|-+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            45677888999999886     25556666778888877664322    333       345567788899998887652


Q ss_pred             --c---chhhhcCCCCCEEEeeCCCCCcC--------------cccccCCCCCceEEcCCCcCCcCCh-----hhhCCCc
Q 028942           68 --L---PETIGSLRNLVLLNVSNNKLKSL--------------PESIGSCYSLEELQANDNLIGELPA-----SICNLIH  123 (201)
Q Consensus        68 --~---~~~~~~~~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~n~i~~~~~-----~~~~~~~  123 (201)
                        +   ..-+..+..|+.|.+++|.+...              .......++|+.+...+|++.+-+.     .+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence              2   23446677888888888877622              1123455678888888887765442     3555677


Q ss_pred             cceEEccCCcCCcc----ChhhhhcCccCCeEecccCCCChh
Q 028942          124 LKSLCLNNNNIGQI----PANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       124 L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +..+.++.|.|..-    -...+..|++|+.|+++.|-++..
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence            88888877777332    224467788888888888877643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.68  E-value=4.8e-10  Score=90.84  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=116.3

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-------hh---hCcCCCCEEEecCCcCcccchh
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-------EL---GQLVRLERLSILGNMLTCLPET   71 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-------~~---~~l~~L~~L~l~~~~~~~~~~~   71 (201)
                      ++..+++|+.|.++++.+.....-..--..|+.| +-.+.+..+..       .+   -.|..|.+.+.++|.+..+...
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S  182 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES  182 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence            3566788999999998876432211111223332 22333332111       11   1255677888888888888788


Q ss_pred             hhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942           72 IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      +.-++.++.|+|++|++..+. .+..+++|++|++++|.++.+|.....-..|..|.+++|.++++..  +.++.+|..|
T Consensus       183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~~L  259 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLYGL  259 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhhcc
Confidence            888888999999999988775 6788999999999999999887643333348999999999988765  5788899999


Q ss_pred             ecccCCCCh-hhhccccChhHHHHH
Q 028942          152 SLHNNPISM-DQFQQMEGFEEFEAR  175 (201)
Q Consensus       152 ~l~~n~l~~-~~~~~l~~~~~l~~~  175 (201)
                      |+++|-|.. .....+..+..|+..
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHH
Confidence            999998763 223334444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.56  E-value=6.9e-09  Score=67.75  Aligned_cols=109  Identities=20%  Similarity=0.315  Sum_probs=76.9

Q ss_pred             ccEEecCCCcCcccCccc---cCCCCCcEEeccCCCCccCchhhh-CcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942            9 IQRLVLDDNHIERLPVNL---GKLQSLKVMTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS   84 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~---~~l~~L~~l~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   84 (201)
                      +..++++.+.+..+++..   .....|...++++|.+..+|..+. ..+.++.+++.+|.++.+|..+..++.|+.+++.
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            344566666666555443   334456666788888887777664 3456788888888888888778788888888888


Q ss_pred             CCCCCcCcccccCCCCCceEEcCCCcCCcCChh
Q 028942           85 NNKLKSLPESIGSCYSLEELQANDNLIGELPAS  117 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  117 (201)
                      .|.+...|..+..+.++..|+..+|.+..++-.
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            888777777666677777788777777766644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.49  E-value=3.1e-07  Score=63.86  Aligned_cols=121  Identities=26%  Similarity=0.329  Sum_probs=73.5

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh-cCCCCCEEEeeCCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKL   88 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~   88 (201)
                      +++++++..+..+...-........++++.|.+..+ ..+..++.|.+|.+++|+|+.+.+.+. .++++.+|.+.+|.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            345556555554433222334566677777777755 234567777788888888877755553 345677777877777


Q ss_pred             CcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccC
Q 028942           89 KSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNN  131 (201)
Q Consensus        89 ~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~  131 (201)
                      ..+.  ..+..+++|+.|.+-+|+++.-..    .+..+++++.||.++
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6542  234566777777777776664321    234556666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.46  E-value=3.1e-07  Score=78.36  Aligned_cols=126  Identities=26%  Similarity=0.385  Sum_probs=87.2

Q ss_pred             CCccEEecCCCcCcccCccccCCCCCcEEeccCCC--CccCchh-hhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEE
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNR--ITSLPDE-LGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~--l~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~   82 (201)
                      ...+.+.+-++.+..++.... .+.|+.|-+..+.  +..++.. |..++.|+.||+++|. +..+|..++.+.+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            344556666666665555443 3467777777775  4555444 5668888888888664 556788888888888888


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcC-CcCChhhhCCCccceEEccCCc
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNN  133 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~~L~~L~l~~~~  133 (201)
                      +.+..+..+|..+.++..|..|++..+.. ..++.....+.+|++|.+....
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            88888888888888888888888877643 3444555557788888876655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=6.1e-07  Score=47.34  Aligned_cols=38  Identities=34%  Similarity=0.621  Sum_probs=18.5

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL   45 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~   45 (201)
                      +|++|++++|.++.+|+.+.++++|+.+++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555554455555555555555554433

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.34  E-value=6.7e-07  Score=62.27  Aligned_cols=126  Identities=19%  Similarity=0.250  Sum_probs=87.7

Q ss_pred             CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCceEEcCCCc
Q 028942           32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNL  110 (201)
Q Consensus        32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~  110 (201)
                      =+.+++++.++..+...-........+|+++|.+..+ ..|..+..|.+|.+++|+|..+.+.+ ...+.+..|.+.+|.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            4456666666655433112244577888888887766 44667788899999999888775544 345678888888888


Q ss_pred             CCcCCh--hhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecccCCC
Q 028942          111 IGELPA--SICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPI  158 (201)
Q Consensus       111 i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~~n~l  158 (201)
                      +..+..  .+..++.|++|.+-+|++.....   .++..+++|+.||++.-..
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            876532  35678888888888888866543   4667778888888875443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=5.5e-07  Score=76.87  Aligned_cols=104  Identities=27%  Similarity=0.453  Sum_probs=64.6

Q ss_pred             CCCccEEecCCCc--CcccCcc-ccCCCCCcEEeccCC-CCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            6 LINIQRLVLDDNH--IERLPVN-LGKLQSLKVMTLDGN-RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         6 l~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~l~l~~~-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      +++|+.|-+.+|.  +..++.. |..++.|+.|++++| .+..+|..++.+-+|++|+++++.+..+|.++..+..|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            3456666666664  4444433 556777777777754 45567777777777777777777777777777777777777


Q ss_pred             EeeCCCCC-cCcccccCCCCCceEEcCCC
Q 028942           82 NVSNNKLK-SLPESIGSCYSLEELQANDN  109 (201)
Q Consensus        82 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~n  109 (201)
                      ++..+... .++.....+.+|+.|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            77665432 22333444666666665444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=1.3e-06  Score=46.14  Aligned_cols=37  Identities=41%  Similarity=0.598  Sum_probs=17.1

Q ss_pred             CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC
Q 028942           55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL   91 (201)
Q Consensus        55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   91 (201)
                      |++|++++|+++.+|+.+..+++|++|++++|.++.+
T Consensus         3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            4444555555544444444455555555555544433

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.1e-07  Score=70.03  Aligned_cols=59  Identities=29%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             CCCcEEeccCCCCc---cCchhhhCcCCCCEEEecCCcCcccchhh-hcCCCCCEEEeeCCCC
Q 028942           30 QSLKVMTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKL   88 (201)
Q Consensus        30 ~~L~~l~l~~~~l~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~   88 (201)
                      ..++.+++.+|.++   ++..-+..+|+++.|+++.|++...-..+ ....+|+++.+++..+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            34455555555544   22223344555555555555444311111 2334455555544433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.22  E-value=7e-07  Score=74.38  Aligned_cols=145  Identities=22%  Similarity=0.271  Sum_probs=95.7

Q ss_pred             CCccEEecCCCcCc--ccCcc-ccCCCCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            7 INIQRLVLDDNHIE--RLPVN-LGKLQSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         7 ~~L~~L~l~~~~l~--~l~~~-~~~l~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      .+|+.|+++|...-  .=+.. -..+|.|+.|.+.+-.+.  .+.....++++|..||+++++++.+ .+.+.+.+|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            46777888775322  11111 234688888888887665  3334456788899999999988887 778888888888


Q ss_pred             EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCC-------hhhhCCCccceEEccCCcC-CccChhhhhcCccCCeE
Q 028942           82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELP-------ASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNI  151 (201)
Q Consensus        82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~-------~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~l  151 (201)
                      .+.+=.+....  ..++.+++|+.||++......-+       .....++.|+.||.+++.+ ..+-.......++|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            88766665432  34678889999999887544332       1233477888999888877 33333444445555544


Q ss_pred             e
Q 028942          152 S  152 (201)
Q Consensus       152 ~  152 (201)
                      .
T Consensus       281 ~  281 (699)
T KOG3665|consen  281 A  281 (699)
T ss_pred             h
Confidence            4

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=6.6e-07  Score=66.00  Aligned_cols=172  Identities=19%  Similarity=0.223  Sum_probs=102.8

Q ss_pred             CCCccEEecCCCcCc---ccCccccCCCCCcEEeccCCCCccCchhh-hCcCCCCEEEecCCcCcc--cchhhhcCCCCC
Q 028942            6 LINIQRLVLDDNHIE---RLPVNLGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC--LPETIGSLRNLV   79 (201)
Q Consensus         6 l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~   79 (201)
                      ++.++++++.+|.+.   .+...+.++|.|+.|++++|++..--..+ .....+++|-+.+..+..  ....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            455677778887776   35555677888888888888776211111 234567777777766542  334456667777


Q ss_pred             EEEeeCCCCCcC--c-ccccCC-CCCceEEcCCCcCC---cCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeE
Q 028942           80 LLNVSNNKLKSL--P-ESIGSC-YSLEELQANDNLIG---ELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNI  151 (201)
Q Consensus        80 ~L~l~~~~~~~~--~-~~~~~~-~~L~~L~l~~n~i~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l  151 (201)
                      .+.++.|.+..+  . .+...+ +.++.+++..|...   .+..-...++++..+.+..|++.+... .-+...+.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            777777755532  1 122222 35666666666543   222223346677778888887744332 224456667778


Q ss_pred             ecccCCCC-hhhhccccChhHHHHHHh
Q 028942          152 SLHNNPIS-MDQFQQMEGFEEFEARRR  177 (201)
Q Consensus       152 ~l~~n~l~-~~~~~~l~~~~~l~~~~~  177 (201)
                      ++..|.|. .+.+..+.+++++.-.+.
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRV  256 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeec
Confidence            88888775 555566666666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1e-05  Score=63.07  Aligned_cols=73  Identities=29%  Similarity=0.454  Sum_probs=48.3

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCC-CCccCchhhhCcCCCCEEEecCC-cCcccchhhhcCCCCCEE
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGN-RITSLPDELGQLVRLERLSILGN-MLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L   81 (201)
                      ..|.+++.|++++|.+..+|. +  -.+|+.|.+.++ .++.+|..+  ...|+.|.+++| .+..+|.      +|+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence            346788899999888888872 2  236888888763 455666443  246888888887 5555544      35566


Q ss_pred             EeeCCC
Q 028942           82 NVSNNK   87 (201)
Q Consensus        82 ~l~~~~   87 (201)
                      .+..+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            665554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.5e-07  Score=69.33  Aligned_cols=148  Identities=21%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             ccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCc-Cccc--chhhhcCCCCCEEE
Q 028942            9 IQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNM-LTCL--PETIGSLRNLVLLN   82 (201)
Q Consensus         9 L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~L~   82 (201)
                      |+.++++...++  .+...+..+.+|+.+.+.++++. .+...+.....|..++++++. ++..  .--+..+..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            344555554444  23334445555555555555554 233334444555555555543 2211  12234444555555


Q ss_pred             eeCCCCC------------------------------cCcccccCCCCCceEEcCCCc-CCc-CChhhhCCCccceEEcc
Q 028942           83 VSNNKLK------------------------------SLPESIGSCYSLEELQANDNL-IGE-LPASICNLIHLKSLCLN  130 (201)
Q Consensus        83 l~~~~~~------------------------------~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~~~~~~L~~L~l~  130 (201)
                      ++||...                              .+......++++..|+++.|. ++. .-..+..++.|+++.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            5555322                              111223455666666666552 221 11234556666666666


Q ss_pred             CCcC-CccChhhhhcCccCCeEecccC
Q 028942          131 NNNI-GQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus       131 ~~~l-~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      .|-. ..-.---+...++|.+|++.+.
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEeccc
Confidence            6532 1110011455566666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=8e-06  Score=59.71  Aligned_cols=156  Identities=20%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             cCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCc----c-------CchhhhCcCCCCEEEecCCcCcc-
Q 028942            5 KLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRIT----S-------LPDELGQLVRLERLSILGNMLTC-   67 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~----~-------~~~~~~~l~~L~~L~l~~~~~~~-   67 (201)
                      -+..+.+++++||.|.     .+...++.-.+|+..+++.....    .       +..++..||+++..++++|.+.. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            4677889999999886     24445566677888877764333    2       23456678999999999987663 


Q ss_pred             cc----hhhhcCCCCCEEEeeCCCCCcCcc--------------cccCCCCCceEEcCCCcCCcCChh-----hhCCCcc
Q 028942           68 LP----ETIGSLRNLVLLNVSNNKLKSLPE--------------SIGSCYSLEELQANDNLIGELPAS-----ICNLIHL  124 (201)
Q Consensus        68 ~~----~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~n~i~~~~~~-----~~~~~~L  124 (201)
                      .|    .-++....+.+|.+++|.+..+..              ....-|.|+.+....|++...+..     +..-..+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            23    334666789999999997764321              123457788888888877655432     2222467


Q ss_pred             ceEEccCCcCCccCh-----hhhhcCccCCeEecccCCCCh
Q 028942          125 KSLCLNNNNIGQIPA-----NLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       125 ~~L~l~~~~l~~~~~-----~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +.+.+..|.|+.-.-     .-+..+.+|+.|+++.|-++-
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            777777777743311     113445677777777777663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.02  E-value=8e-06  Score=59.72  Aligned_cols=160  Identities=20%  Similarity=0.190  Sum_probs=111.6

Q ss_pred             cccCCCccEEecCCCcCc-ccC----ccccCCCCCcEEeccCCCCccCch-----h---------hhCcCCCCEEEecCC
Q 028942            3 ISKLINIQRLVLDDNHIE-RLP----VNLGKLQSLKVMTLDGNRITSLPD-----E---------LGQLVRLERLSILGN   63 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~l~l~~~~l~~~~~-----~---------~~~l~~L~~L~l~~~   63 (201)
                      +.+|+.|+.+++++|.|. ..|    +.++....|..|.+++|.+..+..     +         ...-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            568899999999999877 233    335667889999999998874421     1         223467888888888


Q ss_pred             cCcccc-----hhhhcCCCCCEEEeeCCCCCc-----C-cccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceE
Q 028942           64 MLTCLP-----ETIGSLRNLVLLNVSNNKLKS-----L-PESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSL  127 (201)
Q Consensus        64 ~~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L  127 (201)
                      ++..-|     ..+....+|+++.+..|.|..     + -..++.+.+|+.|++..|.++..     ...++.|+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            876433     234445689999999998761     1 12457788999999999988843     3456778889999


Q ss_pred             EccCCcCCccCh-hhhh-----cCccCCeEecccCCCChhh
Q 028942          128 CLNNNNIGQIPA-NLLK-----DCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       128 ~l~~~~l~~~~~-~~~~-----~~~~L~~l~l~~n~l~~~~  162 (201)
                      .+..|.+..-.. .++.     -.++|..|..++|.+....
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            999998843322 2222     2467788888888765443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=6.7e-07  Score=65.97  Aligned_cols=146  Identities=18%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             ccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCC-CccCc--hhhhCcCCCCEEEecCCcCc-------------
Q 028942            4 SKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNR-ITSLP--DELGQLVRLERLSILGNMLT-------------   66 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~-l~~~~--~~~~~l~~L~~L~l~~~~~~-------------   66 (201)
                      ..|.+|+.|.++|+.+. .+...++.-..|+.++++.+. +++..  --+..|..|+.|+++.|...             
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            34566777777776655 244444445556666655542 33221  12344555555555554322             


Q ss_pred             -----------------ccchhhhcCCCCCEEEeeCCC-CC-cCcccccCCCCCceEEcCCCcCC--cCChhhhCCCccc
Q 028942           67 -----------------CLPETIGSLRNLVLLNVSNNK-LK-SLPESIGSCYSLEELQANDNLIG--ELPASICNLIHLK  125 (201)
Q Consensus        67 -----------------~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~  125 (201)
                                       .+..-...++++..||++.|. +. .+...+..++-|+++.+++|.--  ..--.+...+.|.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence                             122223567899999999884 22 23344677889999999998532  1112466788999


Q ss_pred             eEEccCCcCCccChhhhhcCccCC
Q 028942          126 SLCLNNNNIGQIPANLLKDCKALQ  149 (201)
Q Consensus       126 ~L~l~~~~l~~~~~~~~~~~~~L~  149 (201)
                      +|++.++--..-..-....+++|+
T Consensus       367 yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  367 YLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             EEEeccccCchHHHHHHHhCcccc
Confidence            999877654322222234455544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=5.5e-05  Score=63.37  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=93.7

Q ss_pred             CCCcEEeccCCCCc-cC-chhh-hCcCCCCEEEecCCcCcc--cchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceE
Q 028942           30 QSLKVMTLDGNRIT-SL-PDEL-GQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEEL  104 (201)
Q Consensus        30 ~~L~~l~l~~~~l~-~~-~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  104 (201)
                      .+|+.|++++...- .- |..+ ..+|+|+.|.+++-.+..  +......+++|..||+++++++.+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            46778888775432 11 2223 347889998888765442  234456778899999999988877 667888888888


Q ss_pred             EcCCCcCCcCC--hhhhCCCccceEEccCCcCCccCh------hhhhcCccCCeEecccCCCChhhhccc
Q 028942          105 QANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA------NLLKDCKALQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       105 ~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~------~~~~~~~~L~~l~l~~n~l~~~~~~~l  166 (201)
                      .+.+=.+....  ..+..+++|+.||++.......+.      +....+|.|+.||.+++.+..+.++.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            88776665432  346678999999998876533331      123457899999999999886655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00042  Score=54.28  Aligned_cols=117  Identities=28%  Similarity=0.388  Sum_probs=75.5

Q ss_pred             ccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEEeeCC-CCCcCcccccCCCCCce
Q 028942           26 LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEE  103 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~  103 (201)
                      +..+.++..|++++|.++.+|.   --.+|++|.+++|. ++.+|..+  ..+|+.|.+++| .+..+|.      .|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            3446889999999999998872   23369999998754 55566544  257999999988 5655554      3555


Q ss_pred             EEcCCCc---CCcCChhhhCC------------------CccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942          104 LQANDNL---IGELPASICNL------------------IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus       104 L~l~~n~---i~~~~~~~~~~------------------~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      |.+..+.   +..+|..+..+                  ++|++|++.+|.....|..+   ..+|+.|.+..+
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL---PESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccc---cccCcEEEeccc
Confidence            5555543   33444332221                  36888888887765554321   246777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=7.3e-06  Score=60.08  Aligned_cols=81  Identities=23%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcc--cccCCCCCceEEc
Q 028942           29 LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQA  106 (201)
Q Consensus        29 l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l  106 (201)
                      +.+.+.|+..++.+..+ .-+..|+.|..|.++.|.|+++ ..+..|.+|+.|.|..|.|..+..  .+.++++|+.|++
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            34555566666666654 2334566666666666666665 234556666666666666665432  3455666666666


Q ss_pred             CCCcC
Q 028942          107 NDNLI  111 (201)
Q Consensus       107 ~~n~i  111 (201)
                      ..|+-
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            66543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.44  E-value=0.00078  Score=44.15  Aligned_cols=117  Identities=24%  Similarity=0.448  Sum_probs=40.8

Q ss_pred             ccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCc
Q 028942           26 LGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE  102 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~  102 (201)
                      |..+.+|+.+.+.. .+..++ ..+..+..++.+.+..+ +..++. .+..+.+++.+.+.. .+..++. .+..+++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44455555555543 344332 23444555666665553 444432 234444566665543 3333322 334455666


Q ss_pred             eEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccC
Q 028942          103 ELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKAL  148 (201)
Q Consensus       103 ~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L  148 (201)
                      .+.+..+ ++.++. .+..+ .++.+.+.. .+..++...|.+|++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6665443 333322 23333 555555543 4444555555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.30  E-value=0.0017  Score=42.57  Aligned_cols=117  Identities=19%  Similarity=0.359  Sum_probs=64.5

Q ss_pred             ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNL   78 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   78 (201)
                      .|.++.+|+.+.+.. .+..+ ...|..+.+++.+.+..+ +..++. .+..+..++.+.+.. .+..++. .+..+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            467888999999985 56666 445888889999999875 666643 466777899999976 5555544 45568899


Q ss_pred             CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCcc
Q 028942           79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL  124 (201)
Q Consensus        79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L  124 (201)
                      +.+.+..+ +..++. .+..+ .++.+.+.. .++.++ ..+..+++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99999765 666654 44554 889988876 445554 345555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.00015  Score=52.58  Aligned_cols=84  Identities=23%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             CCCCcEEeccCCCCccCchhhhCcCCCCEEEecCC--cCc-ccchhhhcCCCCCEEEeeCCCCCcCc--ccccCCCCCce
Q 028942           29 LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN--MLT-CLPETIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEE  103 (201)
Q Consensus        29 l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~  103 (201)
                      +..++.+.+.+..++.+ ..+-.+++|++|.++.|  ++. .++.....+++|+++++++|.+..+.  ..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            33444444444444432 11223555666666666  222 12222333456666666666554321  12334444555


Q ss_pred             EEcCCCcCCc
Q 028942          104 LQANDNLIGE  113 (201)
Q Consensus       104 L~l~~n~i~~  113 (201)
                      |++..|..+.
T Consensus       121 Ldl~n~~~~~  130 (260)
T KOG2739|consen  121 LDLFNCSVTN  130 (260)
T ss_pred             hhcccCCccc
Confidence            5555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=6.2e-05  Score=55.37  Aligned_cols=100  Identities=27%  Similarity=0.378  Sum_probs=75.1

Q ss_pred             CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCCh--hhhCCCccceEE
Q 028942           51 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLC  128 (201)
Q Consensus        51 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~L~~L~  128 (201)
                      .+...+.|+..+|.+..| .....++.|++|.|+-|.|+.+.+ +..|+.|+.|.+..|.|.++..  -+.++++|+.|+
T Consensus        17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            355678888888888877 445678889999999999888743 6788889999998888887754  366788888888


Q ss_pred             ccCCcC-CccC----hhhhhcCccCCeEe
Q 028942          129 LNNNNI-GQIP----ANLLKDCKALQNIS  152 (201)
Q Consensus       129 l~~~~l-~~~~----~~~~~~~~~L~~l~  152 (201)
                      |..|+= ..-+    ..+++-+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            887765 2222    24677778887766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00062  Score=49.51  Aligned_cols=97  Identities=27%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC---cCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEc
Q 028942           55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK---SLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCL  129 (201)
Q Consensus        55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l  129 (201)
                      ++.+.+.+..++++ .++-.+++|++|.++.|...   .++.....+++|+.+++++|.+..+.  ..+..+.+|.+|++
T Consensus        45 le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   45 LELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            34444444444443 33444556666677666332   23333344566777777776665432  22344555666666


Q ss_pred             cCCcCCccCh---hhhhcCccCCeEe
Q 028942          130 NNNNIGQIPA---NLLKDCKALQNIS  152 (201)
Q Consensus       130 ~~~~l~~~~~---~~~~~~~~L~~l~  152 (201)
                      .+|.......   .++.-+++|++++
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhcccc
Confidence            6666543332   3455555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.57  E-value=0.0011  Score=29.20  Aligned_cols=20  Identities=25%  Similarity=0.541  Sum_probs=12.5

Q ss_pred             CccEEecCCCcCcccCcccc
Q 028942            8 NIQRLVLDDNHIERLPVNLG   27 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~   27 (201)
                      +|++|++++|.++.+|+.|.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666777776666665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.17  E-value=0.0031  Score=27.69  Aligned_cols=17  Identities=47%  Similarity=0.743  Sum_probs=8.3

Q ss_pred             CCEEEecCCcCcccchh
Q 028942           55 LERLSILGNMLTCLPET   71 (201)
Q Consensus        55 L~~L~l~~~~~~~~~~~   71 (201)
                      |++|++++|.++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44555555555544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.46  E-value=0.00013  Score=58.54  Aligned_cols=87  Identities=33%  Similarity=0.462  Sum_probs=40.7

Q ss_pred             CCCCCEEEeeCCCCCc-----CcccccCCCC-CceEEcCCCcCCcC-----ChhhhCC-CccceEEccCCcCCccC----
Q 028942           75 LRNLVLLNVSNNKLKS-----LPESIGSCYS-LEELQANDNLIGEL-----PASICNL-IHLKSLCLNNNNIGQIP----  138 (201)
Q Consensus        75 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~n~i~~~-----~~~~~~~-~~L~~L~l~~~~l~~~~----  138 (201)
                      ..++++|.+.+|.++.     +...+...+. +..+++.+|.+.+.     ...+... ..++.+++..|.+++..    
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            4455555555555441     1112223333 44455555554422     1222233 34566666666663322    


Q ss_pred             hhhhhcCccCCeEecccCCCChh
Q 028942          139 ANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       139 ~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      ......++.++++.+++|++...
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccccH
Confidence            13344555666666666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.42  E-value=0.014  Score=23.77  Aligned_cols=13  Identities=38%  Similarity=0.475  Sum_probs=4.6

Q ss_pred             CCEEEecCCcCcc
Q 028942           55 LERLSILGNMLTC   67 (201)
Q Consensus        55 L~~L~l~~~~~~~   67 (201)
                      |+.|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.51  E-value=0.042  Score=24.96  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=13.5

Q ss_pred             CccceEEccCCcCCccChhhh
Q 028942          122 IHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus       122 ~~L~~L~l~~~~l~~~~~~~~  142 (201)
                      +.|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456667777777766666544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.51  E-value=0.042  Score=24.96  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=13.5

Q ss_pred             CccceEEccCCcCCccChhhh
Q 028942          122 IHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus       122 ~~L~~L~l~~~~l~~~~~~~~  142 (201)
                      +.|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456667777777766666544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.14  E-value=0.016  Score=46.59  Aligned_cols=104  Identities=28%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             CCCccEEecCCC-cCcc--cCccccCCCCCcEEeccCC--CCccCc----hhhhCcCCCCEEEecCCc-Cccc--chhhh
Q 028942            6 LINIQRLVLDDN-HIER--LPVNLGKLQSLKVMTLDGN--RITSLP----DELGQLVRLERLSILGNM-LTCL--PETIG   73 (201)
Q Consensus         6 l~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~l~l~~~--~l~~~~----~~~~~l~~L~~L~l~~~~-~~~~--~~~~~   73 (201)
                      ++.|+.+.+.++ .+..  +......++.|+.++++++  .....+    .....+..++.++++.+. ++..  .....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            445555555554 2332  3333445566666666552  111111    122334556666666655 3322  11112


Q ss_pred             cCCCCCEEEeeCCC-CC--cCcccccCCCCCceEEcCCC
Q 028942           74 SLRNLVLLNVSNNK-LK--SLPESIGSCYSLEELQANDN  109 (201)
Q Consensus        74 ~~~~L~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~n  109 (201)
                      .+++|++|.+.++. ++  .+......++.|+.|+++.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            25566666655554 33  12223344555666666655

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.16  E-value=0.029  Score=24.96  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=13.1

Q ss_pred             CccCCeEecccCCCChhhhcc
Q 028942          145 CKALQNISLHNNPISMDQFQQ  165 (201)
Q Consensus       145 ~~~L~~l~l~~n~l~~~~~~~  165 (201)
                      +++|+.|++++|.|+.+++..
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHH
Confidence            457788888888887776543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.07  E-value=0.00092  Score=53.84  Aligned_cols=160  Identities=23%  Similarity=0.293  Sum_probs=102.5

Q ss_pred             ccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccC-----chhhhCc-CCCCEEEecCCcCcc-----cchhh
Q 028942            9 IQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSL-----PDELGQL-VRLERLSILGNMLTC-----LPETI   72 (201)
Q Consensus         9 L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~~~l-~~L~~L~l~~~~~~~-----~~~~~   72 (201)
                      +..+.+.+|.+..     +...+...+.|..+++++|.+...     ...+... ..+++|++..|.++.     +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5556677776652     344566778888899988887721     1122222 346677777777763     34556


Q ss_pred             hcCCCCCEEEeeCCCCCc-----Ccccc----cCCCCCceEEcCCCcCCcC-----ChhhhCCCc-cceEEccCCcCCcc
Q 028942           73 GSLRNLVLLNVSNNKLKS-----LPESI----GSCYSLEELQANDNLIGEL-----PASICNLIH-LKSLCLNNNNIGQI  137 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~-----~~~~~----~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~-L~~L~l~~~~l~~~  137 (201)
                      .....++.+++..|.+..     ++..+    ....+++.|.+.+|.++..     ...+...+. +..+++..|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            667788888888887641     22233    3467889999999887732     223444444 66688888888544


Q ss_pred             Ch----hhhhcC-ccCCeEecccCCCChhhhccccC
Q 028942          138 PA----NLLKDC-KALQNISLHNNPISMDQFQQMEG  168 (201)
Q Consensus       138 ~~----~~~~~~-~~L~~l~l~~n~l~~~~~~~l~~  168 (201)
                      ..    ..+..+ ..++.+++..|.|...+...+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~  284 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE  284 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence            21    224444 56789999999998766655544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.83  E-value=0.068  Score=43.04  Aligned_cols=126  Identities=24%  Similarity=0.265  Sum_probs=63.7

Q ss_pred             CCCCcEEeccCC-CCcc--CchhhhCcCCCCEEEecCC-c-Cccc----chhhhcCCCCCEEEeeCCC-CCcC--ccccc
Q 028942           29 LQSLKVMTLDGN-RITS--LPDELGQLVRLERLSILGN-M-LTCL----PETIGSLRNLVLLNVSNNK-LKSL--PESIG   96 (201)
Q Consensus        29 l~~L~~l~l~~~-~l~~--~~~~~~~l~~L~~L~l~~~-~-~~~~----~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~   96 (201)
                      ++.++.+.+..+ .+..  +-.....++.|+.|+++++ . +...    ......+.+++.++++++. ++..  .....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455666655544 2222  2233445667777777663 1 1111    1222345667777777665 4422  12223


Q ss_pred             CCCCCceEEcCCCc-CCc--CChhhhCCCccceEEccCCcCCcc--ChhhhhcCccCCeEecc
Q 028942           97 SCYSLEELQANDNL-IGE--LPASICNLIHLKSLCLNNNNIGQI--PANLLKDCKALQNISLH  154 (201)
Q Consensus        97 ~~~~L~~L~l~~n~-i~~--~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~l~l~  154 (201)
                      .++.|+.|.+.++. +++  +......++.|+.|++++|.....  -..+..+|+.++.+.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            36677777766665 442  333445566677777776655211  11224446655554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.78  E-value=0.0035  Score=45.26  Aligned_cols=84  Identities=23%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEcc
Q 028942           51 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN  130 (201)
Q Consensus        51 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~  130 (201)
                      .....+.||++.|++..+...++.+..+..++++.|.+..+|..+.....++.+++-.|..+..|...+..+.++++++-
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            34445555555555554444455555555556665555555555555555555555555555555555555555655555


Q ss_pred             CCcC
Q 028942          131 NNNI  134 (201)
Q Consensus       131 ~~~l  134 (201)
                      ++.+
T Consensus       120 ~~~~  123 (326)
T KOG0473|consen  120 KTEF  123 (326)
T ss_pred             cCcc
Confidence            5554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.23  E-value=0.29  Score=22.70  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=15.9

Q ss_pred             ccCCeEecccCCCChhhhccc
Q 028942          146 KALQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       146 ~~L~~l~l~~n~l~~~~~~~l  166 (201)
                      ++|++|++++|.+..++...+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            468889999999887765443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.36  E-value=0.015  Score=42.19  Aligned_cols=87  Identities=21%  Similarity=0.268  Sum_probs=69.4

Q ss_pred             ccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEE
Q 028942           26 LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ  105 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  105 (201)
                      +......+.++++.|.+..+...+.-+..+..++++.|.+..+|..+.....+..+++-.|..+..|..+...+.++.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            44456777888888877766555666677778889989888888888888888888888888888888888889999888


Q ss_pred             cCCCcCC
Q 028942          106 ANDNLIG  112 (201)
Q Consensus       106 l~~n~i~  112 (201)
                      +..+.++
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8887654

>TIGR00864 PCC polycystin cation channel protein

Probab=87.02  E-value=0.48  Score=45.83  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=34.3

Q ss_pred             EccCCcCCccChhhhhcCccCCeEecccCCCChhhhccccChhHH
Q 028942          128 CLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF  172 (201)
Q Consensus       128 ~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~l  172 (201)
                      +|++|.|..++...|..+++|+.|+|.+|++.|++  .+..+..+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC--~L~WL~~W   43 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC--GLARLPRW   43 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccc--ccHHHHHH
Confidence            47789999999888999999999999999999885  34444444

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.32  E-value=0.4  Score=34.12  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             CCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcC-CccCh-hhhhcCccCCeEecccC-CCChhhhccccChhHHHHH
Q 028942          100 SLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNI-GQIPA-NLLKDCKALQNISLHNN-PISMDQFQQMEGFEEFEAR  175 (201)
Q Consensus       100 ~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l-~~~~~-~~~~~~~~L~~l~l~~n-~l~~~~~~~l~~~~~l~~~  175 (201)
                      .++.++-+++.|.... ..+..++.++.|.+.+|.- ....- .+-...++|+.|++++| .|+..+...+..++.|+..
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4455555555444322 2345566666666665543 22211 11223467777777776 4777666666666666655


Q ss_pred             Hhhcc
Q 028942          176 RRKKF  180 (201)
Q Consensus       176 ~~~~~  180 (201)
                      ....+
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            54433

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.43  E-value=0.97  Score=20.61  Aligned_cols=15  Identities=33%  Similarity=0.598  Sum_probs=8.3

Q ss_pred             CCccEEecCCCcCcc
Q 028942            7 INIQRLVLDDNHIER   21 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~   21 (201)
                      ++|+.|++++|.|+.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            455556666655544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.31  E-value=0.84  Score=36.16  Aligned_cols=108  Identities=19%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             CcCCCCEEEecCCcC-ccc-chhh-hcCCCCCEEEeeCCC-CCcCc--ccccCCCCCceEEcCCCcCC---cCChhhhCC
Q 028942           51 QLVRLERLSILGNML-TCL-PETI-GSLRNLVLLNVSNNK-LKSLP--ESIGSCYSLEELQANDNLIG---ELPASICNL  121 (201)
Q Consensus        51 ~l~~L~~L~l~~~~~-~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~L~l~~n~i~---~~~~~~~~~  121 (201)
                      .+..++.++.+++.- ... -..+ .+..+|+++.+..++ ++...  ..-++++.|+.+++..+...   .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            455566666665542 211 1122 344566666666663 22211  11244566666666555322   122223345


Q ss_pred             CccceEEccCCcCCccC-----hhhhhcCccCCeEecccCCC
Q 028942          122 IHLKSLCLNNNNIGQIP-----ANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus       122 ~~L~~L~l~~~~l~~~~-----~~~~~~~~~L~~l~l~~n~l  158 (201)
                      +.++.+.+++|......     .....++..|..+.+++.+.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            56666666655441111     11123344555555555553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.70  E-value=1.2  Score=20.29  Aligned_cols=15  Identities=40%  Similarity=0.720  Sum_probs=7.1

Q ss_pred             CceEEcCCCcCCcCC
Q 028942          101 LEELQANDNLIGELP  115 (201)
Q Consensus       101 L~~L~l~~n~i~~~~  115 (201)
                      |+.|+.++|.++.+|
T Consensus         4 L~~L~vs~N~Lt~LP   18 (26)
T smart00364        4 LKELNVSNNQLTSLP   18 (26)
T ss_pred             cceeecCCCccccCc
Confidence            444444444444444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.42  E-value=1.1  Score=20.22  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=13.2

Q ss_pred             CccCCeEecccC-CCChhhhcc
Q 028942          145 CKALQNISLHNN-PISMDQFQQ  165 (201)
Q Consensus       145 ~~~L~~l~l~~n-~l~~~~~~~  165 (201)
                      |+.|++|++.++ .+++.++..
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHH
Confidence            456777777776 366665543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.49  E-value=0.96  Score=37.04  Aligned_cols=62  Identities=24%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             CCCCCceEEcCCCcCCcCC---hhhhCCCccceEEccCC--cCCccCh-hhhhcCccCCeEecccCCCC
Q 028942           97 SCYSLEELQANDNLIGELP---ASICNLIHLKSLCLNNN--NIGQIPA-NLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        97 ~~~~L~~L~l~~n~i~~~~---~~~~~~~~L~~L~l~~~--~l~~~~~-~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +.+.+..+++++|++..+.   ......+.+..|+|++|  .+..... .-+. ..-|++|.+.+|++.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence            3456677788888776543   23345678888888888  4422221 1122 334788888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-08
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-06
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		8e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		6e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		7e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		7e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 9   IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
           + RL L+ N +  LP  +  L +L+V+ L  NR+TSLP ELG   +L+      NM+T L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 69  PETIGSL 75
           P   G+L
Sbjct: 309 PWEFGNL 315

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 12  LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
           L L +  I  +  N+ K   L  + L+GN +T LP E+  L  L  L +  N LT L   
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--- 285
Query: 72  IGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
                               P  +GSC+ L+     DN++  LP    NL +L+ L +  
Sbjct: 286 --------------------PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
Query: 132 N 132
           N
Sbjct: 326 N 326

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 3   ISKLINIQRLVLDDNHIERLPVNLGK-LQSLKVMTLDGNRITSLP-DELGQLVRLERLSI 60
             +L  ++ L L+DN ++ LP  + K L++L+ + +  N++ +LP     QLV L  L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 61  LGNMLTCLP-ETIGSLRXXXXXXXXXXXXXXXPESI-GSCYSLEELQANDNLIGELP-AS 117
             N L  LP     SL                P+ +     SL+EL+  +N +  +P  +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
              L  LK+L L+NN + ++P       + L+ + L  NP 
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
           + +L N+  L+L  N ++ LP     KL +LK + L  N++ SLPD    +L  L  L +
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 61  LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN 120
             N L  LP+ +                           +L  L  ++N +  LP  + +
Sbjct: 141 YHNQLQSLPKGV----------------------FDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 121 -LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
            L  LK L LN+N +  +P  +     +L +I L NNP
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 19  IERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RX 77
           + + P    +L  L+  T+D   +  LPD   Q   LE L++  N L  LP +I SL R 
Sbjct: 93  LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 78  XXXXXXXXXXXXXXPESIGSCYSLEELQANDNL---------IGELPASICNLIHLKSLC 128
                         PE + S  +  E Q   NL         I  LPASI NL +LKSL 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 129 LNNNNIGQIPANL----------LKDCKALQNI 151
           + N+ +  +   +          L+ C AL+N 
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
           I  L N++ L L  N +  +   L +L +L  + L GN++ SLP+    +L  L+ L ++
Sbjct: 59  IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 62  GNMLTCLPETI-GSLRXXXXXXXXXXXXXXXPESI-GSCYSLEELQANDNLIGELPASIC 119
            N L  LP+ +   L                P+ +     +L EL  + N +  LP  + 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 120 N-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           + L  LK L L  N +  +P  +     +LQ I LH+NP
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 8   NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL---GN 63
           N Q L L DN I +L P     L +LK + L  N++ +LP  +G    L +L++L    N
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTN 98
Query: 64  MLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIH 123
            LT LP  +                            L+EL    N + ELP  I  L H
Sbjct: 99  QLTVLPSAV----------------------FDRLVHLKELFMCCNKLTELPRGIERLTH 136
Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           L  L L+ N +  IP        +L +  L  NP
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 12  LVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP 69
           L L+ N ++ LP     +L SL  + L GN++ SLP+    +L  L  L++  N L  LP
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 70  ETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLC 128
             +                            L+EL  N N +  LP  + + L  LK L 
Sbjct: 93  NGV----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 129 LNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           L  N +  +P  +     +LQ I LH+NP 
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 9   IQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT 66
           +Q L L +N    ++P  L     L  + L  N ++ ++P  LG L +L  L +  NML 
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 67  C-LPETIGSLRXXXXXXXXXXX-XXXXPESIGSCYSLEELQ-ANDNLIGELPASICNLIH 123
             +P+ +  ++                P  + +C +L  +  +N+ L GE+P  I  L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 124 LKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
           L  L L+NN+  G IPA  L DC++L  + L+ N
Sbjct: 513 LAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 545

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 9   IQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT 66
           +Q L L +N    ++P  L     L  + L  N ++ ++P  LG L +L  L +  NML 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 67  C-LPETIGSLRXXXXXXXXXXXXXXX-PESIGSCYSLEELQ-ANDNLIGELPASICNLIH 123
             +P+ +  ++                P  + +C +L  +  +N+ L GE+P  I  L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 124 LKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
           L  L L+NN+  G IPA  L DC++L  + L+ N
Sbjct: 516 LAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 548

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 12  LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE 70
           L L  N ++ LP+    L +L V+ +  NR+TSLP   L  L  L+ L + GN L  LP 
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP- 140
Query: 71  TIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCL 129
                                P  +     LE+L   +N + ELPA + N L +L +L L
Sbjct: 141 ---------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 130 NNNNIGQIPANLLKDCKALQNISLHNNPI 158
             N++  IP         L    LH NP 
Sbjct: 180 QENSLYTIPKGFFGS-HLLPFAFLHGNPW 207

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
           L  N ++ LP+    L +L V+ +  NR+TSLP   L  L  L+ L + GN L  LP   
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73  GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
                              P  +     LE+L   +N + ELPA + N L +L +L L  
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNPI 158
           N++  IP         L    LH NP 
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNPW 207

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
           L  N ++ LP+    L +L V+ +  NR+TSLP   L  L  L+ L + GN L  LP   
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73  GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
                              P  +     LE+L   +N + ELPA + N L +L +L L  
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNP 157
           N++  IP         L    LH NP
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNP 206

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
           L  N ++ LP+    L +L V+ +  NR+TSLP   L  L  L+ L + GN L  LP   
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73  GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
                              P  +     LE+L   +N + ELPA + N L +L +L L  
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNP 157
           N++  IP         L    LH NP
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNP 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-43
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (308), Expect = 4e-34
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           E +       L L    + + P    +L  L+ MT+D   +  LPD + Q   LE L++ 
Sbjct: 76  EDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 62  GNMLTCLPETIGSLRNLVLLNVS-NNKLKSLPESIGSCY---------SLEELQANDNLI 111
            N L  LP +I SL  L  L++    +L  LPE + S           +L+ L+     I
Sbjct: 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 112 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
             LPASI NL +LKSL + N+ +  +   +      L+ + L   
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (300), Expect = 7e-33
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDG-NRITSLPDELGQ--------- 51
            + +   ++ L L  N +  LP ++  L  L+ +++     +T LP+ L           
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 52  LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ-ANDNL 110
           LV L+ L +    +  LP +I +L+NL  L + N+ L +L  +I     LEEL       
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 111 IGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNP 157
           +   P        LK L L + +N+  +P ++ +    L+ + L    
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 9e-32
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           E   L+N+Q L L+   I  LP ++  LQ+LK + +  + +++L   +  L +LE L + 
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 62  G-NMLTCLPETIGSLRNLVLLNVSN-NKLKSLPESIGSCYSLEELQANDNL-IGELPASI 118
           G   L   P   G    L  L + + + L +LP  I     LE+L     + +  LP+ I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 119 CNLIHLKSLCLNNNNIGQIPANLL 142
             L     + +  +   Q+  +  
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 1e-31
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           +  +L ++Q + +D   +  LP  + +   L+ +TL  N + +LP  +  L RL  LSI 
Sbjct: 99  QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158

Query: 62  G-NMLTCLPETIGS---------LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 111
               LT LPE + S         L NL  L +    ++SLP SI +  +L+ L+  ++ +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218

Query: 112 GELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNN 156
             L  +I +L  L+ L L     +   P         L+ + L + 
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 1e-28
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLD--GNRITSLPDELGQLVRLERLS 59
             +   N Q        ++     L        + L+     +   PD+  +L  L+ ++
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMT 110

Query: 60  ILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPASI 118
           I    L  LP+T+     L  L ++ N L++LP SI S   L EL       + ELP  +
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 119 CN---------LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +         L++L+SL L    I  +PA+ + + + L+++ + N+P+S
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 7/138 (5%)

Query: 25  NLGKLQSLKVMTLDG-NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV 83
           +       + +   G   +    D L Q    +R                +  N  +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQW---QRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 84  SNNKLKSLPESIGSCYS--LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL 141
           +   LK+  + +          L+     + + P     L HL+ + ++   + ++P   
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT- 122

Query: 142 LKDCKALQNISLHNNPIS 159
           ++    L+ ++L  NP+ 
Sbjct: 123 MQQFAGLETLTLARNPLR 140

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 2e-28
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE--------LGQ 51
           M+  K IN   + L  N I++ P         +  + L  N +TS+P+            
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 52  LVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
              L  + +  N LT L +     +L  L  ++VS N   S P    +   L+       
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 110 LI-------GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                     + P  I     L  L + +N+I ++   L      L  + + +NP  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 1e-27
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 12/169 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLS 59
           +      IQ   +  N++E  P +  L K+  L ++    N++  L    G  V+L  L 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601

Query: 60  ILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPA 116
           +  N +  +PE   +    +  L  S+NKLK +P   +  S Y +  +  + N IG    
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 117 SI------CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +I         I+  ++ L+ N I + P  L      +  I L NN ++
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (252), Expect = 4e-25
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 34/191 (17%)

Query: 2   EISKLINIQRLVLDDNHI--------------------ERLPVNLGKLQSLKVMTL-DGN 40
            I +L  +Q +   ++                      E   ++   L+ L  + L +  
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 41  RITSLPDELGQLVRLERLSILGNMLT----------CLPETIGSLRNLVLLNVSNNKLKS 90
            +T LPD L  L  L+ L+I  N              L +   +   + +  +  N L+ 
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 91  LPES--IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148
            P S  +     L  L    N +  L  +    + L  L L+ N I +IP +       +
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 149 QNISLHNNPIS 159
           + +   +N + 
Sbjct: 622 EGLGFSHNKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 1e-23
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 25/183 (13%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLG------KLQSLKVMTLDGNRITSLPDE-LGQLV 53
                +  +  +    N I     N+       K  +   +TL  N I   P E      
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 54  RLERLSILGNMLTCLPE--------TIGSLRNLVLLNVSNNKLKSLPESI--GSCYSLEE 103
            +  + +  N++T +PE           +   L  +++  NKL SL +     +   L  
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 104 LQANDNLIGELPASICNLIHLKSLCL-------NNNNIGQIPANLLKDCKALQNISLHNN 156
           +  + N     P    N   LK+  +        N  + Q P   +  C +L  + + +N
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSN 816

Query: 157 PIS 159
            I 
Sbjct: 817 DIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 6e-23
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 19/175 (10%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN--------LGKLQSLKVMTLDGNRITSLPDEL--GQL 52
            +    I  ++L +N +  +P N              L  + L  N++TSL D+     L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 53  VRLERLSILGNMLTCLPETIGSLRNLVLLNVS-------NNKLKSLPESIGSCYSLEELQ 105
             L  + +  N  +  P    +   L    +        N  L+  P  I +C SL +LQ
Sbjct: 753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 106 ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              N I ++   +     L  L + +N    I    +          L  +    
Sbjct: 813 IGSNDIRKVDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
              +  +  R+      ++     L     L+        +  +  +    ++  ++  L
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQ-RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N +T + + I  L  L ++  +N+       ++      +              S  NL
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNL 490

Query: 122 IHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L  + L N  N+ Q+P   L D   LQ++++  N   
Sbjct: 491 KDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 7e-13
 Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 11/177 (6%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLS- 59
           ++     +  L L     + R+P  +G+L  LKV++   +  T      G       +S 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 60  --------ILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 111
                       M     + +     L      N ++K + +         ++    N I
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 112 GELPASICNLIHLKSLCLNNNNIGQIPANL-LKDCKALQNISLHNNPISMDQFQQME 167
             +  +I  L  L+ +   N+        +  +D  +       N  +S    + + 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (273), Expect = 5e-28
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 13/171 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLS 59
           +      IQ + +  N+++  PV  +L K++ L ++    N++       G  ++L  L+
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 60  ILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLI----- 111
           +  N +T +P    G    +  L+ ++NKLK +P      S   +  +  + N I     
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 112 ---GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                L  +    I++ S+ L+NN I + P  L      L +I+L  N ++
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 2e-27
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 21/176 (11%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLP--------DELGQL 52
              K IN+  + L +N I + P         L  + L GN +T +P        +     
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 53  VRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN- 109
             L  + +  N LT L +     +L  LV +++S N     P    +  +L+     +  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 110 ------LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                  + E P  I     L  L + +N+I ++   +  +   +  + + +NP  
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.3 bits (240), Expect = 2e-23
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 32/190 (16%)

Query: 2   EISKLINIQRLVLDDNHI--------------------ERLPVNLGKLQSLKVMTL-DGN 40
            + +L  +++  + ++                      +   +    L+ L  + + +  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 41  RITSLPDELGQLVRLERLSILGNMLTCLPE---------TIGSLRNLVLLNVSNNKLKSL 91
            +T LP  L  L  ++ +++  N      +                + ++ +  N LK+ 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 92  --PESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 149
               S+     L  L+   N +     +  + I L SL L  N I +IPAN     + ++
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 150 NISLHNNPIS 159
           N+S  +N + 
Sbjct: 381 NLSFAHNKLK 390

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN--------LGKLQSLKVMTLDGNRITSLPDEL--GQL 52
            S    +  + L  N +  +P N              L  + L  N++T L D+     L
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 53  VRLERLSILGNMLTCLPETIGSLRNLVLLNVS-------NNKLKSLPESIGSCYSLEELQ 105
             L  + +  N  +  P    +   L    +        N  L+  PE I  C SL +LQ
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 106 ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              N I ++   I    ++  L + +N    I  + +          L  +   
Sbjct: 573 IGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 2   EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNR---ITSLPDELGQLVRLER 57
            IS  ++ ++      H ++       +     ++    N      S+       ++  +
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 58  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
           +  L N +T + + +  L  L    + N+    + E+I   +  E  +            
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPF--VAENICEAWENENSEYAQQY-KTEDLK 244

Query: 118 ICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             NL  L  + + N  N+ ++P  L      +Q I++  N   
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-----SLPDELGQLVRL 55
            ++    +  L L+      R+P  +G+L  L+V+ L  +          P  +   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 56  ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL------KSLPESIGSCYSLEELQANDN 109
           E+   +          +         ++  + +      KS+ +S        ++    N
Sbjct: 136 EQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 110 LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPISMDQFQQME 167
            I  +  ++  L  L+   + N+    +      ++  +          +  D  + + 
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 19/145 (13%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
              + L  +  + L  N   + P       +LK   +   R                   
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ---------------- 550

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-IC 119
               L   PE I    +L  L + +N ++ + E I    ++  L   DN    +  S +C
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP--NISVLDIKDNPNISIDLSYVC 608

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKD 144
             I      L  +    I      D
Sbjct: 609 PYIEAGMYMLFYDKTQDIRGCDALD 633

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (269), Expect = 2e-27
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNML 65
              + +L   +N +  LP+    LQ L   ++  N++ SLP    +L    +L    N L
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQEL---SVSDNQLASLPTLPSEL---YKLWAYNNRL 213

Query: 66  TCLPETIGSLRNLVL-----------------LNVSNNKLKSLPESIGSCYSLEELQAND 108
           T LP     L+ L++                 L VS N+L SLP        L  L    
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSG---LLSLSVYR 270

Query: 109 NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ 165
           N +  LP S+ +L    ++ L  N + +     L++  +    S       M     
Sbjct: 271 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (254), Expect = 2e-25
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 19/152 (12%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           +I  LV+ DN++  LP    +L++L    + GN++TSLP     L+ L   S     L  
Sbjct: 62  HITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA 118

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSL 127
           LP        L  L +  N+L SLP        L+EL  +DN +  LPA       L  L
Sbjct: 119 LPS------GLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALPSE---LCKL 166

Query: 128 CLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              NN +  +P         LQ +S+ +N ++
Sbjct: 167 WAYNNQLTSLPMLP----SGLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 3e-23
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 33/169 (19%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKV-----------------MTLDGNRITSLPDELG 50
            ++ L +  N +  LPV    L  L +                 + + GN++TSLP    
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 51  QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL 110
               L+ LS+  N L  LP     L     L   NN+L SLP        L+EL  +DN 
Sbjct: 142 G---LQELSVSDNQLASLPALPSELCK---LWAYNNQLTSLPMLPS---GLQELSVSDNQ 192

Query: 111 IGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +  LP     L  L +    NN +  +PA        L+ + +  N ++
Sbjct: 193 LASLPTLPSELYKLWAY---NNRLTSLPALP----SGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 6e-20
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNML 65
              ++ L++  N +  LPV   +L+ L    + GNR+TSLP     L     LS+  N L
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKEL---MVSGNRLTSLPMLPSGL---LSLSVYRNQL 273

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAN-----DNLIGELPASICN 120
           T LPE++  L +   +N+  N L           +     +      D      P     
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 121 LIHLKSLCLNNNNIGQI 137
           L    +  L     G+ 
Sbjct: 334 LHLAAADWLVPAREGEP 350

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 6e-19
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 29  LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 88
                V+ +  + +T+LPD L     +  L I  N LT LP     LR L    VS N+L
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93

Query: 89  KSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148
            SLP        L         +  LP+       L  L +  N +  +P         L
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPVLP----PGL 143

Query: 149 QNISLHNNPIS 159
           Q +S+ +N ++
Sbjct: 144 QELSVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 2/107 (1%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNML 65
              +  L +  N + RLP +L  L S   + L+GN ++    +  +   +         +
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAPGYSGPI 317

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG 112
                   S                +P   G     +          
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (268), Expect = 2e-27
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           ++   +     L L+  ++  LP NL     + V+ +  N + SLP+    L   E L  
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASL---EYLDA 107

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N L+ LPE   SL++   L+V NN+L  LPE       LE + A++N +  LP    +
Sbjct: 108 CDNRLSTLPELPASLKH---LDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTS 161

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              L+ L + NN +  +P       ++L+ + +  N + 
Sbjct: 162 ---LEVLSVRNNQLTFLPELP----ESLEALDVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
            ++ +  D+N +  LP     L+ L   ++  N++T LP+    L   E L +  N+L  
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVL---SVRNNQLTFLPELPESL---EALDVSTNLLES 194

Query: 68  LPETIGSLRNL----VLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
           LP       +     +      N++  +PE+I S      +   DN +        +   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 124 LKSLCLNNNNI 134
            +         
Sbjct: 255 AQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 5e-16
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL-- 61
               +++ L + +N +  LP     L++L    +  N + SLP    +    E   I   
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFR 213

Query: 62  --GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC 119
              N +T +PE I SL     + + +N L S      S  + +       +   +     
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 120 NLIHLK 125
           N +H  
Sbjct: 274 NTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 63  NMLTCLPETIGS----LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI 118
           N ++       S         L   + N+  SL +         ELQ N   +  LP ++
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNLSSLPDNL 78

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                +  L +  N +  +P        +L+ +   +N +S
Sbjct: 79  PP--QITVLEITQNALISLPELP----ASLEYLDACDNRLS 113

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (257), Expect = 9e-26
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 4   SKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSIL 61
           +    +Q L L +N    ++P  L     L  + L  N ++ ++P  LG L +L  L + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 62  GNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASI 118
            NML   +P+ +  ++ L  L +  N L   +P  + +C +L  +  ++N L GE+P  I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 119 CNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
             L +L  L L+NN+  G IPA  L DC++L  + L+ N  +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 1e-24
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
            +S    +  L L  N++   +P +LG L  L+ + L  N +   +P EL  +  LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 60  ILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPA 116
           +  N LT  +P  + +  NL  +++SNN+L   +P+ IG   +L  L+ ++N   G +PA
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 117 SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
            + +   L  L LN N   G IPA + K    +    +   
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.7 bits (244), Expect = 5e-24
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 3   ISKLINIQRLVLDDNHIE-RLPVNLGKL-QSLKVMTLDGNRIT-SLPDELGQ--LVRLER 57
           + K+  ++ L L  N     LP +L  L  SL  + L  N  +  +   L Q     L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 58  LSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGEL 114
           L +  N  T  +P T+ +   LV L++S N L  ++P S+GS   L +L+   N L GE+
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 115 PASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
           P  +  +  L++L L+ N++ G+IP+  L +C  L  ISL NN ++
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 3   ISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSI 60
           +S+ +N++ L +  N+    +P  LG   +L+ + + GN+++      +     L+ L+I
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 61  LGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESI-GSCYSLEELQANDN-LIGELPA 116
             N     +P     L++L  L+++ NK    +P+ + G+C +L  L  + N   G +P 
Sbjct: 255 SSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 117 SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
              +   L+SL L++NN  G++P + L   + L+ + L  N  S
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 4e-20
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
           E+  +  ++ L+LD N +   +P  L    +L  ++L  NR+T  +P  +G+L  L  L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 60  ILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIGELPAS 117
           +  N  +  +P  +G  R+L+ L+++ N    ++P ++          A + + G+    
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG---KIAANFIAGKRYVY 577

Query: 118 ICNLIHLKSLCLNNNNI---GQIPANLLKDCKALQNISLHNNPIS 159
           I N    K      N +   G     L +        ++ +    
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 11/165 (6%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
            +S   N+  + L +N +   +P  +G+L++L ++ L  N  + ++P ELG    L  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 60  ILGNMLT-CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN---LIGELP 115
           +  N+    +P  +      +  N            I +    +E     N     G   
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAG---KRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 116 ASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
             +  L       + +    G        +  ++  + +  N +S
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 3e-17
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLG-KLQSLKVMTLDGNRIT-SLPDEL---GQLVRL 55
            +     ++ L +  N ++    V+ G KL SL+V+ L  N I+ +             L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 56  ERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIG 112
           + L+I GN ++  +   +    NL  L+VS+N     +P  +G C +L+ L  + N L G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 113 ELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
           +   +I     LK L +++N   G IP   LK    LQ +SL  N  +
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT----------------- 43
            I +L N+  L L +N     +P  LG  +SL  + L+ N                    
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

Query: 44  ----SLPDELGQLVRLERLSILGNMLT---CLPETIGSLRNLVLLNVSNNKLK-SLPESI 95
                    +      +     GN+L       E +  L      N+++         + 
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 96  GSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANL 141
            +  S+  L  + N L G +P  I ++ +L  L L +N+I G IP  +
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRIT-SLPD--ELGQLVRLERL 58
            +  L  ++ L L ++HI           SL  + L  N ++  +     LG    L+ L
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 59  SILGNMLTCL--PETIGSLRNLVLLNVSNNKL-KSLPESI---GSCYSLEELQANDN-LI 111
           ++  N L           L +L +L++S N +  +          C  L+ L  + N + 
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 112 GELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
           G++   +   ++L+ L +++NN    IP   L DC ALQ++ +  N +S
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 22  LPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL---PETIGSLRNL 78
           +  +L  L  L+ + L  + I            L  L +  N L+       ++GS   L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 79  VLLNVSNNKL-KSLPESIG-SCYSLEELQANDN-LIGELPASIC---NLIHLKSLCLNNN 132
             LNVS+N L      S G    SLE L  + N + G              LK L ++ N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 133 NI-GQIPANLLKDCKALQNISLHNNPIS 159
            I G +    +  C  L+ + + +N  S
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 28/160 (17%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
           ++++L       +                 S+  + +  N ++  +P E+G +  L  L+
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 60  ILGNMLTC-LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI 118
           +  N ++  +P+ +G LR L +L++S+N                       L G +P ++
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSN----------------------KLDGRIPQAM 700

Query: 119 CNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNP 157
             L  L  + L+NNN+ G IP       +        NNP
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEM--GQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 44  SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK---SLPESIGSCYS 100
           ++   L  L  LE L +  + +           +L  L++S N L    +   S+GSC  
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 101 LEELQANDN-LIGELPASI-CNLIHLKSLCLNNNNI-GQIPANL--LKDCKALQNISLHN 155
           L+ L  + N L      S    L  L+ L L+ N+I G           C  L+++++  
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 156 NPIS 159
           N IS
Sbjct: 188 NKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 54  RLERLSILGNMLTC----LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
           ++  + +    L      +  ++ SL  L  L +SN+ +           SL  L  + N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 110 -LIGELPA--SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
            L G +    S+ +   LK L +++N +      +      +L+ + L  N IS
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 1e-24
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSI 60
           E+    +I+ L   +N+I R+  +    Q  K + L  N+IT L D + G   R++ L +
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 61  LGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI 118
             N +  +   E   S   L  LN+  N +  +   +     L+ L  + N +  +    
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEF 210

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
            +   +  + L NN +  I   L +  + L++  L  N     
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 4e-22
 Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           ++  L  ++ L L++N+++ L        S++ +    N I+ +    GQ    + + + 
Sbjct: 75  DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQG--KKNIYLA 128

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPASI 118
            N +T L +   G    +  L++  N++ ++   E   S  +LE L    N I ++   +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                LK+L L++N +  +     +    +  ISL NN + +
Sbjct: 189 -VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 3/157 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLS 59
           +      +Q L L  N I+ +          +L+ + L  N I  +  ++    +L+ L 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLD 197

Query: 60  ILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC 119
           +  N L  +     S   +  +++ NNKL  + +++    +LE      N          
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
              + +   +    + ++     ++C           
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 6   LINIQRLVLDDNHIERLPVNLGK-LQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGN 63
               +   + D+ +++   +L +   ++K + L GN ++ +   +L    +LE L++  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 64  MLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
           +L    + + SL  L  L+++NN ++ L        S+E L A +N I  +  S      
Sbjct: 69  VLYETLD-LESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRVSCSR--GQG 121

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            K++ L NN I  +          +Q + L  N I  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 4e-20
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
               N++ L L  N + ++    L     L+++ L  N +    D L  L  L  L +  
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNL 121
           N +      +    ++  L+ +NN +  +  S G     + +   +N I  L        
Sbjct: 90  NYVQ----ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCR 143

Query: 122 IHLKSLCLNNNNIGQIPAN-LLKDCKALQNISLHNNPIS 159
             ++ L L  N I  +    L      L++++L  N I 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 2/153 (1%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
            +    ++ L L  N I  +   +     LK + L  N++  +  E      +  +S+  
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N L  + + +   +NL   ++  N             +          + +L        
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 123 HLKSLCLNNNN-IGQIPANLLKDCKALQNISLH 154
            + +L          +PA       AL +   H
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 44  SLPDELGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLP-ESIGSCYSL 101
           ++ +      R +   +  + L     ++     N+  L++S N L  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 102 EELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           E L  + N++ E    + +L  L++L LNNN + ++         +++ +   NN IS
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNIS 112

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.4 bits (241), Expect = 2e-24
 Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
            I+KL  +  L +   ++   +P  L ++++L  +    N ++ +LP  +  L  L  ++
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 60  ILGNMLT-CLPETIGSLRNLV-LLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELP 115
             GN ++  +P++ GS   L   + +S N+L   +P +  +  +L  +  + N L G+  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214

Query: 116 ASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
               +  + + + L  N++   +    +   K L  + L NN I 
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 4e-20
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 22  LPVNLGKLQSLKVMTLDGNRIT---SLPDELGQLVRLERLSILG-NMLT-CLPETIGSLR 76
           L     +   +  + L G  +     +P  L  L  L  L I G N L   +P  I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 77  NLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI 134
            L  L +++  +  ++P+ +    +L  L  + N L G LP SI +L +L  +  + N I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 135 -GQIPANLLKDCKALQNISLHNNPIS 159
            G IP +     K   ++++  N ++
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 2   EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLS 59
             + L N+  + L  N +E    V  G  ++ + + L  N +   L  ++G    L  L 
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 60  ILGNMLT-CLPETIGSLRNLVLLNVSNNKL 88
           +  N +   LP+ +  L+ L  LNVS N L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 2e-24
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
             + L L  N I+ L  +       L+ + L+ N ++++       L  L  L +  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 66  TCLP-ETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-CNLI 122
             +P      L NL  L++S NK+  L + +    Y+L+ L+  DN +  +       L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            L+ L L   N+  IP   L     L  + L +  I+ 
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 3e-24
 Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
           + L N+ +L + +N I  L   +   L +LK + +  N +  +       L  LE+L++ 
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 62  GNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQ-ANDNLIGELPASI 118
              LT +P E +  L  L++L + +  + ++ +      Y L+ L+ ++   +  +  + 
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              ++L SL + + N+  +P   ++    L+ ++L  NPIS 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG- 62
           L ++++L L+  ++  +P   L  L  L V+ L    I ++ D    +L RL+ L I   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASI-CN 120
             L  +        NL  L++++  L ++P  ++     L  L  + N I  +  S+   
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L+ L+ + L    +  +     +    L+ +++  N ++
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
           +   +++ L L++N +  +       L +L+ + L  NR+  +P      L  L +L I 
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPA-SI 118
            N +  L + +   L NL  L V +N L  +         SLE+L      +  +P  ++
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
            +L  L  L L + NI  I     K    L+ + + + P 
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 2e-20
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 5/161 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDG-NRITSLPDELGQLVRLERLSIL 61
           S L  +  L L   +I  +      +L  LKV+ +     + ++       + L  LSI 
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI- 118
              LT +P   +  L  L  LN+S N + ++  S+      L+E+Q     +  +     
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L +L+ L ++ N +  +  ++      L+ + L +NP++
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY-SLEELQANDNLIGELPASI-C 119
                 +PE I       LL++  N++K+L +   + +  LEEL+ N+N++  +      
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           NL +L++L L +N +  IP  +      L  + +  N I +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
           +  L+ ++ L L  N I  +  + L +L  L+ + L G ++  +       L  L  L++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 61  LGNMLTCLPETI-GSLRNLVLLNVSNNKL 88
            GN LT L E++  S+ NL  L + +N L
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 95.0 bits (237), Expect = 4e-24
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
            +L  ++ L L+DN ++ LP  +  +L++L+ + +  N++ +LP  +  QLV L  L + 
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC 119
            N L  LP  +  SL  L  L++  N+L+SLP+ +     SL+EL+  +N +  +P    
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

Query: 120 -NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
             L  LK+L L+NN + ++P       + L+ + L  NP
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 88.9 bits (221), Expect = 9e-22
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNML 65
           + ++L L  N +  LP     +L  L+++ L+ N++ +LP  +  +L  LE L +  N L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 66  TCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC-NLI 122
             LP  +   L NL  L +  N+LKSLP  +  S   L  L    N +  LP  +   L 
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            LK L L NN + ++P         L+ + L NN +  
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.8 bits (236), Expect = 6e-24
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN 63
                + +L LD   + +L V  G L  L  + L  N++ SLP     L  L  L +  N
Sbjct: 52  MPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 64  MLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC-N 120
            LT LP      L  L  L +  N+LK+LP  +      LE+L   +N + ELPA +   
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           L +L +L L  N++  IP         L    LH NP
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.0 bits (234), Expect = 1e-23
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT 66
           +   L L +N +    +  L     L  + LD   +T L    G L  L  L +  N L 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQ 90

Query: 67  CLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC-NLIHL 124
            LP    +L  L +L+VS N+L SLP         L+EL    N +  LP  +      L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           + L L NNN+ ++PA LL   + L  + L  N +  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSI 60
              L  +  L +  N +  LP+     L  L+ + L GN + +LP  L     +LE+LS+
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 61  LGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
             N LT LP  +   L NL  L +  N L ++P+     + L     + N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 4/132 (3%)

Query: 29  LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNK 87
           + S   +  D   +T+LP +L        L +  N+L             L  LN+   +
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 88  LKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 147
           L  L    G+   L  L  + N +  LP     L  L  L ++ N +  +P   L+    
Sbjct: 67  LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 148 LQNISLHNNPIS 159
           LQ + L  N + 
Sbjct: 126 LQELYLKGNELK 137

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 6e-24
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTL-DGNRITSLPDE-LGQLVRLERLSI 60
             L  ++ L L +N IE +P     ++ SL+ + L +  R++ + +     L  L  L++
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SI 118
               L  +P  +  L  L  L++S N L ++   S      L++L    + I  +   + 
Sbjct: 193 AMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
            NL  L  + L +NN+  +P +L      L+ I LH+NP 
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG- 62
           L N+  L L DN +  +P      L  LK + L  N I S+P     ++  L RL +   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 63  NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICN 120
             L+ + E     L NL  LN++   L+ +P ++     L+EL  + N +  +   S   
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           L+HL+ L +  + I  I  N   + ++L  I+L +N +++
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 8e-22
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
           N + L L +N I+ + VN    L+ L+++ L  N I ++       L  L  L +  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 66  TCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQ-ANDNLIGELPASI-CNL 121
           T +P      L  L  L + NN ++S+P        SL  L       +  +       L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            +L+ L L   N+ +IP   L     L  + L  N +S 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSA 221

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY-SLEELQANDNLIGELPASI-C 119
              L  +P+ I    N  LLN+  N+++ +  +       LE LQ + N I  +      
Sbjct: 52  RKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L +L +L L +N +  IP         L+ + L NNPI 
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
            ++ LI +  L L  NH+  +       L  L+ + +  ++I  +       L  L  ++
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 60  ILGNMLTCLPE-TIGSLRNLVLLNVSNN 86
           +  N LT LP      L +L  +++ +N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 84  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLL 142
               L+ +P+ I +  +   L  ++N I  +  +   +L HL+ L L+ N+I  I     
Sbjct: 51  VRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 143 KDCKALQNISLHNNPISM 160
                L  + L +N ++ 
Sbjct: 109 NGLANLNTLELFDNRLTT 126

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
             L+++Q+L +  + I+ +  N    LQSL  + L  N +T LP +    L  LER+ + 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 62  GNMLTC 67
            N   C
Sbjct: 288 HNPWNC 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 7e-24
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTL-DGNRITSLPDE-LGQLVRLERLSILG 62
           L  ++ L L +N IE +P     ++ SL  + L +  ++  + +     L  L+ L++  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICN 120
             +  +P  +  L  L  L +S N    +   S     SL++L   ++ +  +   +   
Sbjct: 206 CNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           L  L  L L +NN+  +P +L    + L  + LH+NP 
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 6e-23
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 4   SKLINIQRLVLDDNHIERLP----VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERL 58
           + L ++  L L DN +  +P      L KL+ L    L  N I S+P     ++  L RL
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLREL---WLRNNPIESIPSYAFNRVPSLMRL 176

Query: 59  SILG-NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 116
            +     L  + E     L NL  LN+    +K +P ++     LEEL+ + N   E+  
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP 235

Query: 117 -SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            S   L  LK L + N+ +  I  N      +L  ++L +N +S 
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
           N + L L +N+I+ +  +    L  L+V+ L  N I  +       L  L  L +  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 66  TCLP-ETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQ-ANDNLIGELPASI-CNL 121
           T +P      L  L  L + NN ++S+P        SL  L       +  +       L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162
            +LK L L   NI  +P   L     L+ + +  N     +
Sbjct: 196 FNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIR 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 37  LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 95
                ++ +P  +        L+++ N +  +   T   L +L +L +  N ++ +    
Sbjct: 61  CTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 96  -GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 153
                SL  L+  DN +  +P+     L  L+ L L NN I  IP+       +L  + L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 154 -HNNPIS 159
                + 
Sbjct: 179 GELKKLE 185

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
            ++ L+ ++ L +  NH   +       L SLK + +  ++++ +       L  L  L+
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 60  ILGNMLTCLPE-TIGSLRNLVLLNVSNN 86
           +  N L+ LP      LR LV L++ +N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 84  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLL 142
           +   L  +P+ I S  +   L   +N I  + A    +L HL+ L L  N+I QI     
Sbjct: 62  TRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 143 KDCKALQNISLHNNPISM 160
               +L  + L +N +++
Sbjct: 120 NGLASLNTLELFDNWLTV 137

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
             L ++++L + ++ +  +  N    L SL  + L  N ++SLP +    L  L  L + 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 62  GNMLTC 67
            N   C
Sbjct: 299 HNPWNC 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 1e-23
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            I+ L ++  L L+ N IE +   L  L SL   T   N+IT +   +  + RL  L I 
Sbjct: 172 PIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIG 229

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N +T L   + +L  L  L +  N++  +  ++     L+ L    N I ++   + NL
Sbjct: 230 NNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV-LNNL 286

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L SL LNNN +G     ++     L  + L  N I+
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 4e-23
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++ L ++       N I  +   +  +  L  + +  N+IT L   L  L +L  L I 
Sbjct: 194 PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIG 251

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICN 120
            N ++ +   +  L  L +LNV +N++  +   + +   L  L  N+N +G      I  
Sbjct: 252 TNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L +L +L L+ N+I  I    L     + +    N  I 
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 6/158 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            +S L+ +  L +  N I  +   L  L +L+ + L+ + I+ +   L  L ++  L++ 
Sbjct: 83  PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLG 140

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N        + ++  L  L V+ +K+K +   I +   L  L  N N I ++   + +L
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASL 198

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L       N I  I    + +   L ++ + NN I+
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.1 bits (222), Expect = 2e-21
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            I  L N++ L L+ N I  +   L  L  L  + +  N+IT +   L  L  L  L + 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            + ++ +   + +L  +  LN+  N   S    + +   L  L   ++ + ++   I NL
Sbjct: 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL 176

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L SL LN N I  I    L    +L   + + N I+
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 6e-19
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 26/178 (14%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--------------- 47
            + L    R VL    +  +     +L+S+  + + G ++ S+                 
Sbjct: 18  DADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN 76

Query: 48  ------ELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSL 101
                  L  LV+L  L I  N +T +   + +L NL  L ++ + +  +   + +   +
Sbjct: 77  QITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKM 134

Query: 102 EELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L    N      + + N+  L  L +  + +  +    + +   L ++SL+ N I 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 32  LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL 91
              +      I  +      L    R  +    +T +  T   L ++  L V+  K+ S+
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI 59

Query: 92  PESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 151
              I    +LE L  N N I ++   + NL+ L +L +  N I  I A  L++   L+ +
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLREL 115

Query: 152 SLHNNPIS 159
            L+ + IS
Sbjct: 116 YLNEDNIS 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.3 bits (230), Expect = 4e-23
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
             L ++  L+L  N I+ L +     L SL+ +      + SL +   G L  L+ L++ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 62  GNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQA-------NDNLIG 112
            N++          +L NL  L++S+NK++S+         L ++         + N + 
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 113 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
            +       I LK L L+ N +  +P  +     +LQ I LH NP
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNML 65
           + + L L  N +  L          L+V+ L    I ++ D     L  L  L + GN +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 66  TCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPAS--ICNL 121
             L       L +L  L      L SL     G   +L+EL    NLI          NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQ----NISLHNNPISM 160
            +L+ L L++N I  I    L+    +     ++ L  NP++ 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
                +Q L L    I+ +       L  L  + L GN I SL       L  L++L  +
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQANDNLIGELPASI 118
              L  L    IG L+ L  LNV++N ++S        +  +LE L  + N I  +  + 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 119 -CNLIHLK----SLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              L  +     SL L+ N +  I     K+ + L+ ++L  N +  
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 38  DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI- 95
                  +PD L      + L +  N L  L      S   L +L++S  +++++ +   
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 96  GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 154
            S   L  L    N I  L       L  L+ L     N+  +    +   K L+ +++ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 155 NNPIS 159
           +N I 
Sbjct: 133 HNLIQ 137

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 8e-23
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSIL 61
               +++ L L  N +  +  N   L+ L+ +    + +  + +      L  L  L I 
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIGELPASI 118
                     I   L +L +L ++ N  +   LP+      +L  L  +   + +L  + 
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 119 -CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
             +L  L+ L +++NN   +     K   +LQ +    N I  
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLG---KLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
            KL  + +L L  N +              SLK + L  N + ++      L +LE L  
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108

Query: 61  LGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEEL--QANDNLIGELP 115
             + L  + E     SLRNL+ L++S+   +     I     SLE L    N      LP
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                L +L  L L+   + Q+         +LQ +++ +N   
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 5e-20
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 8/160 (5%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL---GN 63
           +  RL L+ N ++ LP     KL  L  ++L  N ++              L  L    N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 64  MLTCLPETIGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQANDNLIGELPASIC-N 120
            +  +      L  L  L+  ++ LK + E     S  +L  L  +          I   
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 121 LIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 159
           L  L+ L +  N+       ++  + + L  + L    + 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
             L  ++ L    ++++++        L++L  + +         +     L  LE L +
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 61  LGN-MLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSC-YSLEELQANDNLIGELPAS 117
            GN         I   LRNL  L++S  +L+ L  +  +   SL+ L  + N    L   
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 118 I-CNLIHLKSLCLNNNNIGQIPANLLKD-CKALQNISLHNNPIS 159
               L  L+ L  + N+I       L+    +L  ++L  N  +
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
           + L+ ++RL L  N ++ LP  +   ++L+ + +  N IT +       L ++  + +  
Sbjct: 97  APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 63  NMLTCL---PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SI 118
           N L            ++ L  + +++  + ++P+  G   SL EL  + N I ++ A S+
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASL 212

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
             L +L  L L+ N+I  +    L +   L+ + L+NN +  
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 4e-21
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLG---KLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           + L  +  + L  N ++   +  G    ++ L  + +    IT++P  L     L  L +
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHL 199

Query: 61  LGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASI 118
            GN +T +   ++  L NL  L +S N + ++   S+ +   L EL  N+N + ++P  +
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 119 CNLIHLKSLCLNNNNIGQIPAN------LLKDCKALQNISLHNNPISM 160
            +  +++ + L+NNNI  I +N            +   +SL +NP+  
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 8e-21
 Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 13/164 (7%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
             +  +  + + D +I  +P  L    SL  + LDGN+IT +    L  L  L +L +  
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 63  NMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS---- 117
           N ++ +   ++ +  +L  L+++NNKL  +P  +     ++ +  ++N I  + ++    
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 118 ---ICNLIHLKSLCLNNNNI--GQIPANLLKDCKALQNISLHNN 156
                       + L +N +   +I  +  +       + L N 
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             L N+  L+L +N I ++       L  L+ + L  N++  LP+++     L+ L +  
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHE 130

Query: 63  NMLTCLPETI-GSLRNLVLLNVSNNKLKSL---PESIGSCYSLEELQANDNLIGELPASI 118
           N +T + +++   L  ++++ +  N LKS      +      L  ++  D  I  +P  +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                L  L L+ N I ++ A  LK    L  + L  N IS 
Sbjct: 191 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLT 66
           +++ +   D  +E++P +L       ++ L  N+IT +   +   L  L  L ++ N ++
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 67  CL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHL 124
            + P     L  L  L +S N+LK LPE +    +L+EL+ ++N I ++  S+   L  +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQM 147

Query: 125 KSLCLNNNNI--GQIPANLLKDCKALQNISLHNNPIS 159
             + L  N +    I     +  K L  I + +  I+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-------LGQLVRLE 56
           +   +++ L L++N + ++P  L   + ++V+ L  N I+++            +     
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 57  RLSILGNMLTCL---PETIGSLRNLVLLNVSNNK 87
            +S+  N +      P T   +     + + N K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 1e-22
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERL 58
                  +++ L L  N +  +  N   L+ L+ +    + +  + +      L  L  L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 59  SILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIGELP 115
            I               L +L +L ++ N  +   LP+      +L  L  +   + +L 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 116 ASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +   +L  L+ L + +N +  +P  +     +LQ I LH NP  
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPVN---LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             L +++ L L  N +              SLK + L  N + ++      L +LE L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 61  LGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE--LP 115
             + L  + E     SLRNL+ L++S+   +     I     SLE L+   N   E  LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                L +L  L L+   + Q+         +LQ +++ +N +  
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
                +Q L L    I+ +       L  L  + L GN I SL       L  L++L  +
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGELPA-S 117
              L  L    IG L+ L  LNV++N ++S   PE   +  +LE L  + N I  +    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 118 ICNLIHLK----SLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
           +  L  +     SL L+ N +  I     K+ + L  ++L NN  S++
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 5   KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLSIL 61
           KL +++RL    N        +  L SL+ + L  N ++              L+ L + 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI--GSCYSLEELQANDNLIGELPASIC 119
            N +  +      L  L  L+  ++ LK + E     S  +L  L  +          I 
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 120 -NLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
             L  L+ L +  N+       ++  + + L  + L    + 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
              L ++  L+L  N I+ L +     L SL+ +      + SL +  +G L  L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 61  LGNMLTCL--PETIGSLRNLVLLNVSNNKLKSLPESI-----GSCYSLEELQANDNLIGE 113
             N++     PE   +L NL  L++S+NK++S+  +              L  + N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 114 LPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS 159
           +       I L  L L NN     +    ++    L+   L      
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 26/148 (17%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ET 71
             + +  ++P NL    S K + L  N +  L          L+ L +    +  +    
Sbjct: 14  CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
             SL +L  L ++ N ++SL                         +   L  L+ L    
Sbjct: 72  YQSLSHLSTLILTGNPIQSLA----------------------LGAFSGLSSLQKLVAVE 109

Query: 132 NNIGQIPANLLKDCKALQNISLHNNPIS 159
            N+  +    +   K L+ +++ +N I 
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 20/187 (10%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMT----LDGNRITSLPDELGQLVRLER 57
            S L N++ L L  N I+ +    L  L  + ++     L  N +  +     + +RL +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 58  LSILGNMLTC--LPETIGSLRNLVLLN------VSNNKLKSLPESI-GSCYSLE----EL 104
           L++  N  +   +   I  L  L +         +   L+   +S      +L      L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 105 QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 164
              D  + ++      L ++ S  L +  I ++           Q++ L N         
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL 322

Query: 165 QMEGFEE 171
           +++  + 
Sbjct: 323 KLKSLKR 329

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
            ++L N+  L L    +E+L       L SL+V+ +  N++ S+PD    +L  L+++ +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 61  LGNMLTCLPETIGSLRN 77
             N   C    I  L  
Sbjct: 526 HTNPWDCSCPRIDYLSR 542

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 6/163 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGN-RITSLPDE-LGQLVRLERLSI 60
               N+  L L  N + R+       L  L+ + L  N ++ S+       L RL  L +
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 61  LGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI 118
               L  L   +   L  L  L + +N L++LP+       +L  L  + N I  +P   
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 119 -CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              L  L  L L+ N +  +  +  +D   L  + L  N +S 
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 6   LINIQRLVLDDN-HIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
           L  +++L L DN  +  +       L  L  + LD   +  L       L  L+ L +  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 63  NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-C 119
           N L  LP+     L NL  L +  N++ S+PE      +SL+ L  + N +  +      
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           +L  L +L L  NN+  +P   L   +ALQ + L++NP
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 6e-17
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 26/156 (16%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNM- 64
             QR+ L  N I  +P       ++L ++ L  N +  +       L  LE+L +  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 65  LTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
           L  +   T   L  L  L++    L+ L                       P     L  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAA 130

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L+ L L +N +  +P +  +D   L ++ LH N IS
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-C 119
              L  +P  I        + +  N++  +P +   +C +L  L  + N++  + A+   
Sbjct: 20  QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 120 NLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 159
            L  L+ L L++N  +  +          L  + L    + 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.1 bits (224), Expect = 3e-21
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 15/174 (8%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL---PDELGQLVRLER 57
           E   L NI  + L  N   +L  N    + SL+ + L    + ++   P     L  L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 58  LSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL---------PESIGSCYSLEELQAN 107
           L +  N +  +  + +  L  L +L++ +N L  L            +     L  L   
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 108 DNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            N   E+P  +  +L  LK + L  NN+  +PA++  +  +L++++L  N I+ 
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 7e-21
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 7/165 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
             ++   +  L +  N I +L      KL  LKV+ L  N ++ L D+       L  L 
Sbjct: 44  NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 60  ILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA- 116
           ++ N +  +        +NL+ L++S+N L S    +     +L+EL  ++N I  L + 
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 117 --SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              I     LK L L++N I +           L  + L+N  + 
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 9e-21
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 7   INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNML 65
           ++ +        + ++P +L    ++ V+ L  N++  L      +  +L  L +  N +
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 66  TCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLI 122
           + L PE    L  L +LN+ +N+L  L + +   C +L EL    N I ++         
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L +L L++N +           + LQ + L NN I 
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN---LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERL 58
            + + ++QRL+L    ++ +  +      L++L ++ L  N I ++ D+ L  L +LE L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 59  SILGNMLTCL---------PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQAND 108
            +  N L  L            +  L +L +LN+ +N    +  E     + L+ +    
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 109 NLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDC-KALQNISLHNNPISMD 161
           N +  LPAS+  N + LKSL L  N I  +   +     + L  + +  NP    
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 12/169 (7%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQ-----SLKVMTLDGNRITSLPDE-LGQLVRLE 56
            + LIN++ L L ++      +            L ++ L  N+I+ +  +    L  LE
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 57  RLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI-- 111
            L +  N +      +    L N+  + +S NK   L   S     SL+ L      +  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 112 -GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
               P+    L +L  L L+NNNI  I  ++L+  + L+ + L +N ++
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 8e-17
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN----LGKLQSLKVMTLDGNRITSLPDELGQLVRLERL 58
              +  +  L L++  +               S++ ++L  +++++  +     ++   L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 59  SIL---GNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI-- 111
           ++L    N L  +  ++   L  L    +  N ++ L   S+   +++  L    +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 112 --------GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                        S   L  L+ L + +N+I  I +N+      L+ +SL N+  S
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 3   ISKLINIQRLVLDDNHIERLP---VNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERL 58
             +L N+Q L+L +N I+ L    +++    SLK + L  N+I    P     + RL  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 59  SILGNMLTC-LPETIG---SLRNLVLLNVSNNKLKSLPESIGS---CYSLEELQANDNLI 111
            +    L   L E +    +  ++  L++SN++L +   +        +L  L  + N +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 112 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
             +   S   L  L+   L  NNI  + ++ L     ++ ++L  +     
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 2   EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGN---------RITSLPDE-LG 50
             + L  ++   L+ N+I+ L   +L  L +++ + L  +          +  + D    
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 51  QLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIGSCY-----SLEEL 104
            L  LE L++  N +  +       L NL  L++SN+       +  +        L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 105 QANDNLIGELPA-SICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHNNPISM 160
               N I ++ + +   L HL+ L L  N IGQ +     +  + +  I L  N    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.4 bits (221), Expect = 4e-21
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
            ++L +I +++ +++ I+ +   +  L ++  + L+GN++T +   L  L  L  L +  
Sbjct: 39  QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N +  L  ++  L+ L  L++ +N +  +   +     LE L   +N I ++   +  L 
Sbjct: 97  NKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT-VLSRLT 153

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L +L L +N I  I    L     LQN+ L  N IS
Sbjct: 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 8e-21
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           I  L N+ +L L+ N +  +   L  L++L  + LD N+I  L   L  L +L+ LS+  
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEH 118

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N ++ +   +  L  L  L + NNK+  +   +     L+ L   DN I ++   +  L 
Sbjct: 119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLT 175

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162
            L++L L+ N+I  + A  L   K L  + L +       
Sbjct: 176 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 1e-20
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
                   +  L    +    V   +L S+  +  + + I S+   +  L  + +L + G
Sbjct: 17  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 74

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N LT + + + +L+NL  L +  NK+K L  S+     L+ L    N I ++   + +L 
Sbjct: 75  NKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLP 131

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L+SL L NN I  I    L     L  +SL +N IS
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 1e-17
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 9   IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
           +   +     I+++              L    +T       +L  ++++    + +  +
Sbjct: 1   MGETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 69  PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 128
            + I  L N+  L ++ NKL  + + + +  +L  L  ++N I +L  S+ +L  LKSL 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115

Query: 129 LNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L +N I  I    L     L+++ L NN I+
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 7e-15
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 27/182 (14%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           ++ L N+  L LD+N I+ L  +L  L+ LK ++L+ N I+ +   L  L +LE L +  
Sbjct: 83  LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 140

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA------ 116
           N +T +   +  L  L  L++ +N++  +   +     L+ L  + N I +L A      
Sbjct: 141 NKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRALAGLKN 198

Query: 117 -----------------SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                               NL+   ++   + ++               N+  H    +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 160 MD 161
            +
Sbjct: 259 NE 260

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 8/161 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             L ++  LVL +N I ++       L+ L+ + +  N +  +P  L     L  L I  
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHD 132

Query: 63  NMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIG--SCYSLEELQANDNLIGELPASIC 119
           N +  +P+     LRN+  + +  N L++     G      L  L+ ++  +  +P  + 
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
               L  L L++N I  I    L     L  + L +N I M
Sbjct: 192 -PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
           S L  +Q+L +  NH+  +P NL    SL  + +  NRI  +P      L  +  + + G
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 63  NMLTCLPETIGSLRNLVL--LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SIC 119
           N L       G+   L L  L +S  KL  +P+ +    +L EL  + N I  +    + 
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLL 214

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
               L  L L +N I  I    L     L+ + L NN +S
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 9e-21
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLD--GNRITSLPDELGQLVRLERLSIL 61
           S L N+  + +  N +E      G    LK+  L     ++T +P +L     L  L + 
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLD 201

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC 119
            N +  +    +     L  L + +N+++ +         +L EL  ++N +  +PA + 
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKA------LQNISLHNNPISMDQFQ 164
           +L  L+ + L+ NNI ++  N                ISL NNP+   + Q
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELG--QLVRLERLSILGNM 64
           ++  L + DN I ++P      L+++  + + GN + +   E G    ++L  L I    
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 65  LTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASIC-NLI 122
           LT +P+       L  L++ +NK++++    +     L  L    N I  +       L 
Sbjct: 184 LTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L+ L L+NN + ++PA L  D K LQ + LH N I+
Sbjct: 242 TLRELHLDNNKLSRVPAGL-PDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
           +   L L +N I  L  +    LQ L  + L  N+I+ + ++    L +L++L I  N L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE--LPASICNLI 122
             +P       +LV L + +N+++ +P+ +     ++  ++   N +          + +
Sbjct: 115 VEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L  L ++   +  IP +L    + L  + L +N I 
Sbjct: 173 KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 20/153 (13%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
            +  L LD N I+ + +  L +   L  + L  N+I  + +  L  L  L  L +  N L
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLK 125
           + +P  +  L+ L ++ +  N +  +  +                            +  
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV----------------KRAYYN 297

Query: 126 SLCLNNNNI--GQIPANLLKDCKALQNISLHNN 156
            + L NN +   ++     +       I   N 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 31  SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLK 89
            L+V+      + ++P E+        L +  N ++ L +     L++L  L + NNK+ 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 90  SLPE-SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148
            + E +      L++L  + N + E+P ++     L  L +++N I ++P  +    + +
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 149 QNISLHNNPIS 159
             I +  NP+ 
Sbjct: 150 NCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-------LGQLVRLE 56
           S L  ++ L LD+N + R+P  L  L+ L+V+ L  N IT +            +     
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 57  RLSILGNMLTCL---PETIGSLRNLVLLNVSNNK 87
            +S+  N +      P T   + + + +   N K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 5e-21
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSI 60
           E+    +I+ L   +N+I R+  +    Q  K + L  N+IT L D + G   R++ L +
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 61  LGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI 118
             N +  +   E   S   L  LN+  N +  +   +     L+ L  + N +  +    
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEF 210

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
            +   +  + L NN +  I   L +  + L++  L  N     
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCG 252

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 3/160 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLS 59
           +      +Q L L  N I+ +          +L+ + L  N I  +  ++    +L+ L 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLD 197

Query: 60  ILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC 119
           +  N L  +     S   +  +++ NNKL  + +++    +LE      N          
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              + +   +    + ++     ++C              
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 3e-19
 Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           ++  L  ++ L L++N+++ L        S++ +    N I+ +    GQ    + + + 
Sbjct: 75  DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQG--KKNIYLA 128

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPASI 118
            N +T L +   G    +  L++  N++ ++   E   S  +LE L    N I ++   +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                LK+L L++N +  +     +    +  ISL NN + +
Sbjct: 189 -VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 6   LINIQRLVLDDNHIERLPVNLGK-LQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGN 63
               +   + D+ +++   +L +   ++K + L GN ++ +   +L    +LE L++  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 64  MLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
           +L    + + SL  L  L+++NN ++ L        S+E L A +N I  +  S      
Sbjct: 69  VLYETLD-LESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRVSCSR--GQG 121

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            K++ L NN I  +          +Q + L  N I 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 4e-17
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 10/159 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
               N++ L L  N + ++    L     L+++ L  N +    D L  L  L  L +  
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNL 121
           N +      +    ++  L+ +NN +  +  S G     + +   +N I  L        
Sbjct: 90  NYVQ----ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCR 143

Query: 122 IHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPIS 159
             ++ L L  N I  +  A L      L++++L  N I 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 3e-16
 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 8/161 (4%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNML 65
              ++ L L  N +  +         +  ++L  N++  +   L     LE   + GN  
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPASIC----- 119
            C        +N  +  V+   +K L  ++   C              +LPA        
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 120 -NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                   L    +   ++      +    + I        
Sbjct: 310 LKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 44  SLPDELGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSL-PESIGSCYSL 101
           ++ +      R +   +  + L     ++     N+  L++S N L  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 102 EELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           E L  + N++ E    + +L  L++L LNNN + ++         +++ +   NN IS
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 18/187 (9%), Positives = 42/187 (22%), Gaps = 31/187 (16%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           E      +  + L +N +  +   L   Q+L+   L GN                  ++ 
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 62  GNMLTCLPETIGS------------------------------LRNLVLLNVSNNKLKSL 91
              +  L                                     +   LL+   ++ + L
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 92  PESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQN 150
                +     E+ A       +   +        +L      + +  +N  +    L  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 151 ISLHNNP 157
                  
Sbjct: 389 TLQQAVG 395

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.0 bits (218), Expect = 6e-21
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 17/165 (10%)

Query: 8   NIQRLVLDDNHIERLP-----VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
               L L  N++ RL        L  L SL    L  N +  +  E    +  L  L + 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSL---LLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 62  GNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPA--- 116
            N L  L       L+ L +L + NN +  +  +       L++L  + N I   P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 117 -SICNLIHLKSLCLNNNNIGQIPANLLKDCKAL--QNISLHNNPI 158
                L  L  L L++N + ++P   L+   A     + LHNNP+
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
             + N++ L L  NH+  L       LQ+L+V+ L  N I  +       + +L++L + 
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 62  GNMLTCLPE----TIGSLRNLVLLNVSNNKLKSLPES 94
            N ++  P         L  L+LL++S+NKLK LP +
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY--SLEELQANDNLIGELPASI- 118
              L  +P+++ S     LL++S+N L  L          +L  L  + N +  + +   
Sbjct: 27  KQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             + +L+ L L++N++  +   L  D +AL+ + L+NN I 
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE----LGQLVRLERL 58
           S L  ++ L+L +NHI  +  N    +  L+ + L  N+I+  P E      +L +L  L
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

Query: 59  SILGNMLTCLP-ETIGSLRNLVLLNVS 84
            +  N L  LP   +  L   V   + 
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 4   SKLINIQRLVLDDNHIERLP----VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRL--E 56
             +  +Q+L L  N I R P     +  KL  L ++ L  N++  LP   L +L      
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 57  RLSILGNMLTCLPETIGSLRNLVLLNVSNN 86
            L +  N L C  +      +     +S+ 
Sbjct: 193 GLYLHNNPLECDCKLYQLFSHWQYRQLSSV 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
           +          L L++  +  LP     L+SL       N +T LP+    L  L   + 
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNN 121

Query: 61  LGNMLTCLPET----------------IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEEL 104
               L+ LP                  + +   L +++V NN LK LP+      SLE +
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFI 178

Query: 105 QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            A +N + ELP  + NL  L ++  +NN++ ++P   L     L++I   NN + 
Sbjct: 179 AAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 25/170 (14%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD----------------EL 49
             +++ LV   N +  LP     L+SL V   +   ++ LP                 EL
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149

Query: 50  GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
                L+ + +  N L  LP+   SL  +      NN+L+ LPE + +   L  + A++N
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPE-LQNLPFLTAIYADNN 205

Query: 110 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            + +LP    +   L+S+   NN + ++P   L++   L  I   NN + 
Sbjct: 206 SLKKLPDLPLS---LESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           N+  L    N I  L      L+ L    +  N++  LP    +L   ERL    N L  
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELN---VSNNKLIELPALPPRL---ERLIASFNHLAE 351

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGS----------------CYSLEELQANDNLI 111
           +PE   +L+    L+V  N L+  P+   S                  +L++L    N +
Sbjct: 352 VPELPQNLKQ---LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 112 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            E P    ++  L+   +N+  +        +    L++    ++   
Sbjct: 409 REFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 25/172 (14%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           E+  L  +  +  D+N +++LP     L+S+       N +  LP EL  L  L  +   
Sbjct: 190 ELQNLPFLTAIYADNNSLKKLPDLPLSLESI---VAGNNILEELP-ELQNLPFLTTIYAD 245

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N+L  LP+   SL     LNV +N L  LPE   S   L+  +   + + ELP ++  L
Sbjct: 246 NNLLKTLPDLPPSLEA---LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

Query: 122 I--------------HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                           L+ L ++NN + ++PA   +    L+ +    N ++
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           E  +          +  + RL   L   +    + L+   ++SLP+    L   E L   
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCL--DRQAHELELNNLGLSSLPELPPHL---ESLVAS 99

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N LT LPE   SL++L++ N +   L  LP        LE L  ++N + +LP  + N 
Sbjct: 100 CNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNS 152

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             LK + ++NN++ ++P        +L+ I+  NN + 
Sbjct: 153 SFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 25/168 (14%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLV----------- 53
              +Q  +   +++  +PV    ++S        +    + P   G+             
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 54  --RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 111
             +   L +    L+ LPE    L +   L  S N L  LPE   S  SL     N   +
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 112 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +LP        L+ L ++NN + ++P   L++   L+ I + NN + 
Sbjct: 127 SDLPPL------LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 51  QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL-KSLPESIGS------------ 97
               L+      + LT +P    ++++      + ++  ++ P   G             
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 98  -CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
                 EL+ N+  +  LP    +   L+SL  + N++ ++P  L +  K+L   + +  
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELP-ELPQSLKSLLVDNNNLK 124

Query: 157 PIS 159
            +S
Sbjct: 125 ALS 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 18/106 (16%)

Query: 68  LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLI---- 122
           +     S   L      ++ L  +P    +  S  E     +      P           
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 123 ---------HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                        L LNN  +  +P         L+++    N ++
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLT 104

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 85.9 bits (213), Expect = 6e-21
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)

Query: 10  QRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC 67
           ++L L    +  L       L  L  + LD N++ +L   +   L  L  L +  N L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 68  LPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASICN-LIHL 124
           LP  +   L  L  L +  N+LKSLP  +      L+EL+ N N +  +PA   + L +L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           ++L L+ N +  +P         LQ I+L  N 
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG 62
            L  +  L L +N +  LP+ +   L  L  + L GN++ SLP  +  +L +L+ L +  
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

Query: 63  NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDN 109
           N L  +P      L NL  L++S N+L+S+P         L+ +    N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 30/159 (18%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGN 63
           L N + +   ++ + +LP   L   + ++++ L+  +I  +          +++L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 64  MLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-CN 120
            +  LP  +  ++  L +L +  N L SLP  I  +   L  L  ++N +  +       
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              L++L L++N +  +  +L+     L + ++  N +S
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 9e-21
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
             +  +  LVL+ N +  LP  +      L  +++  N +  + D+  Q    L+ L + 
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-----------------GSCYSLEEL 104
            N LT +   +  + +L   NVS N L +L   I                      L  L
Sbjct: 174 SNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231

Query: 105 QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +   N + +    + N   L  + L+ N + +I  +     + L+ + + NN + 
Sbjct: 232 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 10/158 (6%)

Query: 12  LVLDDNHIERLPVNLGK------LQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNM 64
            V  D HI+    ++        L + K++T   + +  LP   L    ++E L++    
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 65  LTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-CNL 121
           +  +          +  L +  N ++ LP  +  +   L  L    N +  LP  I  N 
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L +L ++NNN+ +I  +  +   +LQN+ L +N ++
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
                ++ L L+D  IE +         +++ + +  N I  LP  + Q +  L  L + 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC 119
            N L+ LP  I  +   L  L++SNN L+ + +    +  SL+ LQ + N +  +  S  
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-- 183

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            +  L    ++ N +  +   +     A++ +   +N I++
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSINV 219

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           +     +  + L  N +E++  +   K+Q L+ + +  NR+ +L      +  L+ L + 
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
            N L  +         L  L + +N + +L   + + ++L+ L  + N
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 41  RITSLPDELGQLVRLERLSI--LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GS 97
               +   L        + I      +    E I +L N  ++   N+ ++ LP ++  S
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 98  CYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
              +E L  ND  I E+          ++ L +  N I  +P ++ ++   L  + L  N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 157 PISM 160
            +S 
Sbjct: 128 DLSS 131

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
               +  ++ L L  NH+  +  N  +   L+ + LD N I +L   L     L+ L++ 
Sbjct: 290 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 347

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEE 103
            N   C           +  NV+   +    +     Y LE 
Sbjct: 348 HNDWDCNS------LRALFRNVARPAVDDADQHCKIDYQLEH 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 4e-20
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 6/164 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLS 59
                 +++ L L  N +  +  N   L+ L+ +    + +  + +      L  L  L 
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 60  ILGNMLT-CLPETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDN-LIGELP 115
           I               L +L +L ++ N  +   LP+      +L  L  +   L    P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +  +L  L+ L +++NN   +     K   +LQ +    N I 
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 2   EISKLINIQRLVLDDNHIERL--PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERL 58
               L  ++ L    ++++++        L++L  + +               L  LE L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 59  SILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI-GEL 114
            + GN      LP+    LRNL  L++S  +L+ L P +  S  SL+ L  + N      
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 115 PASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159
                 L  L+ L  + N+I       L     +L  ++L  N  +
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 9e-18
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLS 59
                  +Q L L    I+ +       L  L  + L GN I SL       L  L++L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 60  ILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGEL-P 115
            +   L  L    IG L+ L  LNV++N ++S   PE   +  +LE L  + N I  +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 116 ASICNLIHLK----SLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
             +  L  +     SL L+ N +  I     K+ + L  ++L NN  S++
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNML 65
           + + L L  N +  L          L+V+ L    I ++       L  L  L + GN +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 66  TCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI--GELPASICNL 121
             L       L +L  L      L SL    IG   +L+EL    NLI   +LP    NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQN----ISLHNNPIS 159
            +L+ L L++N I  I    L+    +      + L  NP++
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 10/165 (6%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLS 59
               L ++  L+L  N I+ L +     L SL+ +      + SL    +G L  L+ L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 60  ILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL----IG 112
           +  N++     PE   +L NL  L++S+NK++S+    +   + +  L  + +L    + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 113 ELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
            +       I L  L L NN     +    ++    L+   L   
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           + S     Q L L +    + P     L+SLK +T   N+  +   E+  L  LE L + 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLS 355

Query: 62  GNMLT---CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN-LIGELPAS 117
            N L+   C  ++     +L  L++S N + ++  +      LE L    + L      S
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 118 I-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +  +L +L  L +++ +       +     +L+ + +  N   
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL--PDELGQLVRLERLS 59
            S L ++Q+LV  + ++  L    +G L++LK + +  N I S   P+    L  LE L 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 60  ILGNMLTCL-PETIGSLRNL----VLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE- 113
           +  N +  +    +  L  +    + L++S N +  +         L +L   +N     
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 114 -LPASICNLIHLKSLCL---NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +   I  L  L+   L      N G +        + L N+++    ++
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 39  GNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIG 96
                 +PD L      + L +  N L  L   +  S   L +L++S  +++++   +  
Sbjct: 16  ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 97  SCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155
           S   L  L    N +      +   L  L+ L     N+  +    +   K L+ +++ +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 156 NPIS 159
           N I 
Sbjct: 134 NLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 2   EISKLINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRITSLPD----ELGQLVRL 55
              K I + +L L +N      +   +  L  L+V  L      +  +    +   L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 56  ERLSILGNMLTCL-------PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAND 108
             L+I    L  L        +    L N+   ++ +  ++ +       +  + L+  +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVN 313

Query: 109 NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
              G+ P     L  LK L   +N  G   + +  D  +L+ + L  N +S 
Sbjct: 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 2   EISKLINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERL 58
             + L +++ L +  N  +   LP    +L++L  + L   ++  L P     L  L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 59  SILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESI--GSCYSLEELQANDN-LIGEL 114
           ++  N    L       L +L +L+ S N + +  +        SL  L    N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 115 PAS--ICNLIHLKSLCLNNNNI-GQIPANL 141
                +  +   + L +    +    P++ 
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 84  SNNKLKSLPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLL 142
                  +P+++    S + L  + N +  L   S  +   L+ L L+   I  I     
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 143 KDCKALQNISLHNNPIS 159
           +    L  + L  NPI 
Sbjct: 73  QSLSHLSTLILTGNPIQ 89

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 9/159 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLG---KLQSLKVMTLDGNRITSLPDELGQLVRLERLS 59
                ++Q LVL  NH+  +         L++L  + +  N    +PD      ++  L+
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416

Query: 60  ILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC 119
           +    +  +       + L +L+VSNN L S    +     L+EL  + N +  LP +  
Sbjct: 417 LSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDAS- 470

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
               L  + ++ N +  +P  +     +LQ I LH NP 
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 9e-19
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
            ++ L L  N I  +    L    +L+V+ L  +RI ++  +    L  LE L +  N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 66  TCLP-ETIGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQ-ANDNLIGELPA-SICN 120
           + L     G L +L  LN+  N  ++L  +    +  +L+ L+  N     E+       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L  L  L +   ++    +  LK  + + +++LH +  +
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
           +    N+Q L+L  + I  +  +    L SL+ + L  N ++SL     G L  L+ L++
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 61  LGNMLTCLPET--IGSLRNLVLLNVS-NNKLKSLPE-SIGSCYSLEELQANDNLIGELPA 116
           +GN    L  T    +L NL  L +        +         SL EL+     +    +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 117 -SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
            S+ ++  +  L L+ +    +         +++ + L +  ++ 
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 24/214 (11%), Positives = 60/214 (28%), Gaps = 47/214 (21%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSI 60
            + L ++  L +    +       L  ++ +  +TL  +    L +     L  +  L +
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 61  LGN-----------------------------------MLTCLPETIGSLRNLVLLNVSN 85
                                                  L  L   I  L  +   + + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 86  NKLKSLPESIGS---------CYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIG 135
           N L     S              ++  L      +    +++   L  +K + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 136 QIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 169
            +P +  +  K+L+ + L  N +  +  +     
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASIC- 119
               T +P  +     +  L++S NK+  +    + +C +L+ L    + I  +      
Sbjct: 14  SRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L  L+ L L++N++  + ++      +L+ ++L  NP  
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 81  LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPA 139
            +  +    S+P  + +  +++ L  + N I  +    +    +L+ L L ++ I  I  
Sbjct: 10  CDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 140 NLLKDCKALQNISLHNNPIS 159
           +      +L+++ L +N +S
Sbjct: 68  DAFYSLGSLEHLDLSDNHLS 87

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++KL N++ L+  +N I  +   LG L +L  ++L+GN++  +   L  L  L  L + 
Sbjct: 194 VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N ++ L   +  L  L  L +  N++ ++   +    +L  L+ N+N + ++   I NL
Sbjct: 252 NNQISNLAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PISNL 308

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +L  L L  NNI  I    +     LQ +  +NN +S
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
            + L    + VL   ++     +   L  +  +  D   I S+   +  L  L +++   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSN 77

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N LT +   + +L  LV + ++NN++  +   + +  +L  L   +N I ++   + NL 
Sbjct: 78  NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLT 134

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 166
           +L  L L++N I  I A  L    +LQ +S  N    +     +
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANL 176

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            +  L N+ ++   +N +  +   L  L  L  + ++ N+I  +   L  L  L  L++ 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF 120

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N +T +   + +L NL  L +S+N +  +  ++    SL++L   + +    P  + NL
Sbjct: 121 NNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANL 176

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L+ L +++N +  I    L     L+++   NN IS
Sbjct: 177 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 212

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +  L N+ RL L  N I  +   L  L SL+ ++         P  L  L  LERL I  
Sbjct: 130 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISS 186

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N ++ +   +  L NL  L  +NN++  +   +G   +L+EL  N N + ++  ++ +L 
Sbjct: 187 NKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLT 243

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L  L L NN I  +    L     L  + L  N IS
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++ L  +  L L++N +E +   +  L++L  +TL  N I+ +   +  L +L+RL   
Sbjct: 282 PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFY 339

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N ++ +   + +L N+  L+  +N++  L   + +   + +L  ND      P +    
Sbjct: 340 NNKVSDVSS-LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           + + +   N       PA  + D  +     +  N  S
Sbjct: 398 VSIPNTVKNVTGALIAPAT-ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 3/137 (2%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            IS L N+  L L  N+I  +   +  L  L+ +    N+++ +   L  L  +  LS  
Sbjct: 304 PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG 361

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N ++ L   + +L  +  L +++    + P +  +  S+     N       PA+I + 
Sbjct: 362 HNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG 420

Query: 122 IHLKSLCLNNNNIGQIP 138
                  +  N      
Sbjct: 421 GSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 12  LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
            +  D  I ++      L       L    +T        L ++  L      +  +   
Sbjct: 7   TITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG- 63

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
           +  L NL  +N SNN+L  +   + +   L ++  N+N I ++   + NL +L  L L N
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 132 NNIGQIPANLLKDCKALQNISLHNNPIS 159
           N I  I    LK+   L  + L +N IS
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++ L NI  L    N I  L   L  L  +  + L+    T+ P      V +      
Sbjct: 348 SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 95
                  P TI    +    +++ N      E  
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 14/86 (16%), Positives = 25/86 (29%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++ L  I +L L+D      PVN     S+     +       P  +          I 
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNK 87
            N+ +   E   +    V +      
Sbjct: 430 WNLPSYTNEVSYTFSQPVTIGKGTTT 455

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 5e-20
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
            + +N+Q LVL  N I  +  +    L SL+ + L  N +++L       L  L  L++L
Sbjct: 73  QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132

Query: 62  GNMLTCLPETI--GSLRNLVLLNVSNN-KLKSLPESI-GSCYSLEELQANDNLIGELPA- 116
           GN    L ET     L  L +L V N      +          LEEL+ + + +      
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ 165
           S+ ++ ++  L L+      +    +    +++ + L +  +    F +
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 7/160 (4%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNML 65
            ++ L L +N I  +  + L +  +L+ + L  N I ++ ++    L  LE L +  N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 66  TCLPETI-GSLRNLVLLNVSNNKLKSLPESI--GSCYSLEELQANDN-LIGELPASI-CN 120
           + L  +    L +L  LN+  N  K+L E+        L+ L+  +     ++       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           L  L+ L ++ +++       LK  + + ++ LH     +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 4   SKLINIQRLVLDDNH-IERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
           S L  +Q L + +     ++       L  L+ + +D + + S   + L  +  +  L +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 61  LGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLP---------ESIGSCYSLEELQANDNL 110
                  L E       ++  L + +  L +            S+   ++   ++  D  
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 111 IGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           + ++   +  +  L  L  + N +  +P  +     +LQ I LH NP
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 6e-16
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSI 60
           S L +++ L L  N++  L  +    L SL  + L GN   +L +      L +L+ L +
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 61  LGNM-LTCLPE-TIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPAS 117
                 T +       L  L  L +  + L+S   +S+ S  ++  L  +      L   
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 118 I-CNLIHLKSLCLNNNNIGQIP--------ANLLKDCKALQNISLHNNPIS 159
                  ++ L L + ++             N L      +N+ + +  + 
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 4   SKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGN-RITSLPDE-LGQLVRLERLS 59
             L ++  L L  N  + L        L  L+++ +      T +  +    L  LE L 
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 60  ILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELP-- 115
           I  + L     +++ S++N+  L +   +   L E       S+E L+  D  +      
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 116 -------ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                   S+      +++ + + ++ Q+   LL     L  +    N +  
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-C 119
              L  +P  +     +  L++SNN++  +  S    C +L+ L    N I  +      
Sbjct: 40  SGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L  L+ L L+ N +  + ++  K   +L  ++L  NP  
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
            K    + + + D  + ++   L ++  L  +    N++ S+PD    +L  L+++ +  
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNK 87
           N   C    I  L   +  N    +
Sbjct: 311 NPWDCSCPRIDYLSRWLNKNSQKEQ 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 6e-20
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERL 58
               L  +Q L    + ++R+        L+ L  + +         D     L  L  L
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 59  SILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELP 115
            + GN      L     +  NL  L++S  +L+ +   +  + + L+ L  + N +  L 
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 116 AS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
           +S    L  L +L  + N I      L    K+L   +L NN ++  
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 11/166 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
           S    +Q L L    IE +       L  L  + L GN I S        L  LE L  +
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIGELPASI 118
              L  L    IG L  L  LNV++N + S  LP    +  +L  +  + N I  +  + 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 119 C-----NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                 N     SL ++ N I  I     +  K L  ++L  N  S
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
              L ++  L+L  N I+         L SL+ +     ++ SL    +GQL+ L++L++
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 61  LGNMLTC--LPETIGSLRNLVLLNVSNNKLKSLPESI-----GSCYSLEELQANDNLIGE 113
             N +    LP    +L NLV +++S N ++++  +       +      L  + N I  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 114 LPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +       I L  L L  N N   I    L++   L    L      
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
              L N+  + L    I+ L  ++ K    + +++   ++   P     L  L+ L++  
Sbjct: 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTM 337

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE---SIGSCYSLEELQANDNLIGELPASIC 119
           N  + +     +L +L  L++S N L        S     SL  L  + N    + A+  
Sbjct: 338 NKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396

Query: 120 NLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM 160
            L  L+ L   ++ + ++   +     + L  + +      +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITS--LPDELGQLVRLERLS 59
            S L +++ LV  +  +  L    +G+L +LK + +  N I S  LP     L  L  + 
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 60  ILGNMLTCLPETI-----GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE- 113
           +  N +  +          + +  + L++S N +  + +       L EL    N     
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 114 -LPASICNLIHLKSLCL------NNNNIGQIPANLLKDCKALQNISLHNN 156
            +   + NL  L    L      +  N+     ++++    +        
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 26/148 (17%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCL-PET 71
             D  + ++P ++    S K + L  N +  L          L+ L +    +  +  + 
Sbjct: 18  CMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
              L +L  L ++ N ++S                        P S   L  L++L    
Sbjct: 76  WHGLHHLSNLILTGNPIQSFS----------------------PGSFSGLTSLENLVAVE 113

Query: 132 NNIGQIPANLLKDCKALQNISLHNNPIS 159
             +  + +  +     L+ +++ +N I 
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 17/167 (10%)

Query: 5   KLINIQRLVLDDNHI--ERLPVNLGKLQSLKVMTLDGNRITSLPD----ELGQLVRLERL 58
           + I +  L L  N      +   L  L  L V  L         +    E   +  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 59  SILGNMLTCL------PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG 112
           +I    LT              L N+  ++++   +K L +     +  + L      + 
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLK 320

Query: 113 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           + P    +L  LKSL L  N        +     +L  + L  N +S
Sbjct: 321 QFPTL--DLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALS 363

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
            +   N+  L L    +E++       L  L+++ +  N +  L      QL  L  L  
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 61  LGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC 119
             N +      +    ++L   N++NN +  + E       L+ ++     +  +    C
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK---FLQWVKEQKQFLVNVEQMTC 585

Query: 120 N 120
            
Sbjct: 586 A 586

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 6e-20
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 5   KLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN 63
             ++++ + L  ++   +  N       L+ + L    ++ LP  L  L  L++L +  N
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 64  MLTCLPE-TIGSLRNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGELPA---S 117
               L + +  +  +L  L++  N  +       + +  +L EL  + + I         
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           + NL HL+SL L+ N    +     K+C  L+ + L    + 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 8e-19
 Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PET 71
            ++  +  +P  L    S + +    N + ++      +L+ L  L +    +  +  +T
Sbjct: 19  CENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 72  IGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCL 129
             S   L  L ++ N L  +   ++    +L+ L      I  +    + N   L+SL L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 130 NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +N+I  I        + L+ +   NN I 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
             +   ++ L L    ++          L  LKV+ L  + +    ++    L  L+ L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 60  ILGNMLT----CLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGEL 114
           + GN           ++ +L  L +L +S   L S+   +  S   +  +  + N +   
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 115 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                + +    L L +N+I  I  +LL      + I+L  NP+ 
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 9e-18
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 8/174 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
             S+LIN+  L L    I  +  +       L  + L  N +  + +  L     L+ L 
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 60  ILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA- 116
            +   ++ +    + + + L  L + +N + S+          L+ L   +N I  L   
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 117 SICNLIHLK--SLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEG 168
            + +L      SL LN N+I  I      D    Q+++       +  F+ ++ 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 9e-18
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 10/168 (5%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE--LGQLVRLER 57
           +++  L ++Q L L  N    L      +   L+++ L   R+     +     L  L+ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 58  LSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL----PESIGSCYSLEELQANDNLIG 112
           L++  ++L     +    L  L  LN+  N           S+ +   LE L  +   + 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 113 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +   +  +L  +  + L++N +       L   K +  ++L +N IS
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 9/169 (5%)

Query: 2   EISKLINIQRLVLD--DNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE---LGQLVRLE 56
           ++S L     L L+   N I  +          + +   G +   +  +      +  L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 57  RLSILGNMLTCLPETI---GSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG 112
             +        +   +       ++  +N+  +   ++   +      L+EL      + 
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 113 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
           ELP+ +  L  LK L L+ N    +      +  +L ++S+  N   ++
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
           + + L    N +  +      +L +L  + L   +I  + ++      RL+ L +  N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 66  TCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLI 122
             +    +   + L  L      + S+    + +  +LE L    N I  +         
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLH--NNPIS 159
            LK L   NN I  +    +   +   N+SL+   N I+
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSIL 61
           S    ++ L      I  +    L   ++L+ + L  N I+S+   +     +L+ L   
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 62  GNMLTCL-PETIGSLRNLVL--LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP--- 115
            N +  L  E + SL+      LN++ N +  +          + L         +    
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHNNPIS 159
                +  L      + +   I   + +      +++I+L  +   
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 2   EISKLINIQRLVLDDNHIERLPVN---LGKLQSLKVMTLDGNRITSLPDEL---GQLVRL 55
                   Q L         +         +QSL + T +      +   +      + +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 56  ERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 114
           E +++  +    +   T      L  L+++   L  LP  +    +L++L  + N    L
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

Query: 115 PA-SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPISM 160
              S  N   L  L +  N    ++    L++ + L+ + L ++ I  
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 12/169 (7%)

Query: 3   ISKLINIQRLVLDDNHI--ERLPVNLGKLQSLKVMTLDGNRITSLP---DELGQLVRLER 57
            S   ++  L +  N    E     L  L++L+ + L  + I +      +L  L  L+ 
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 58  LSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGEL 114
           L++  N    L  E       L LL+++  +LK         + + L+ L  + +L+   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 115 PASIC-NLIHLKSLCLNNNNIGQI---PANLLKDCKALQNISLHNNPIS 159
              +   L  L+ L L  N+  +      N L+    L+ + L    +S
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.4 bits (204), Expect = 9e-20
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 25/153 (16%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNML 65
            I  + L+ N I+ +P       + L+ + L  N+I+ L  D    L  L  L + GN +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 66  TCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHL 124
           T LP+++   L +L LL ++ NK+  L                            +L +L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ----------------------DLHNL 130

Query: 125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
             L L +N +  I        +A+Q + L  NP
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
           S    ++R+ L +N I  L  +    L+SL  + L GN+IT LP  L   L  L+ L + 
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDN 109
            N + CL       L NL LL++ +NKL+++ +       +++ +    N
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 56  ERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQA---NDNLI 111
             + +  N +  +P       + L  +++SNN++  L     +   L  L +     N I
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLRSLNSLVLYGNKI 92

Query: 112 GELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            ELP S+   L  L+ L LN N I  +  +  +D   L  +SL++N + 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYS-LEELQANDNLIGELPASIC 119
           G  LT +P  +  ++  + L     N +K +P    S Y  L  +  ++N I EL     
Sbjct: 20  GKGLTEIPTNLPETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 120 N-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L  L SL L  N I ++P +L +   +LQ + L+ N I+
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
            L ++Q L+L+ N I  L V+    L +L +++L  N++ ++       L  ++ + +  
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 63  NMLTC 67
           N   C
Sbjct: 162 NPFIC 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 5e-19
 Identities = 30/159 (18%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGN 63
           L N + +   ++ + +LP   L   + ++++ L+  +I  +          +++L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 64  MLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-CN 120
            +  LP  +  ++  L +L +  N L SLP  I  +   L  L  ++N +  +       
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              L++L L++N +  +  +L+     L + ++  N +S
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 6e-19
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
             +  +  LVL+ N +  LP  +      L  +++  N +  + D+  Q    L+ L + 
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-----------------GSCYSLEEL 104
            N LT +   +  + +L   NVS N L +L   I                      L  L
Sbjct: 180 SNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237

Query: 105 QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +   N + +    + N   L  + L+ N + +I  +     + L+ + + NN + 
Sbjct: 238 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 7e-19
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 12  LVLDDNHIERLPVNLGK------LQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNM 64
            V  D HI+    ++        L + K++T   + +  LP   L    ++E L++    
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 65  LTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-CNL 121
           +  +          +  L +  N ++ LP  +  +   L  L    N +  LP  I  N 
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEE 171
             L +L ++NNN+ +I  +  +   +LQN+ L +N ++      +     
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 196

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.7 bits (199), Expect = 4e-18
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
                ++ L L+D  IE +         +++ + +  N I  LP  + Q +  L  L + 
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC 119
            N L+ LP  I  +   L  L++SNN L+ + +    +  SL+ LQ + N +  +  S  
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-- 189

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            +  L    ++ N +  +   +     A++ +   +N I+
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
           +    IQ+L +  N I  LP +    +  L V+ L+ N ++SLP  +     +L  LS+ 
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155

Query: 62  GNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            N L  +  +T  +  +L  L +S+N+L  +   +    SL     + NL+  L      
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----I 209

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            I ++ L  ++N+I  +   +  +   L  + L +N ++
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 7e-13
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           +     +  + L  N +E++  +   K+Q L+ + +  NR+ +L      +  L+ L + 
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
            N L  +         L  L + +N + +L   + + ++L+ L  + N
Sbjct: 310 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 8/168 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
               +  ++ L L  NH+  +  N  +   L+ + LD N I +L   L     L+ L++ 
Sbjct: 296 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 353

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGELPA 116
            N   C        RN+    V +          L   +    S +           L +
Sbjct: 354 HNDWDCNSLRAL-FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS 412

Query: 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 164
            +  +   +  C   + I  + +      +        N  +  +  +
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 7e-19
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            +  L N+  L L DN I  L   L  L  +  + L GN + ++   +  L  ++ L + 
Sbjct: 58  GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLT 115

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
              +T +   +  L NL +L +  N++ ++   +    +L+ L   +  + +L   + NL
Sbjct: 116 STQITDVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP-LANL 172

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L +L  ++N I  I    L     L  + L NN IS
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 9e-17
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
              L N  ++    +++    V    L  +  ++  G  +T++   +  L  L  L +  
Sbjct: 15  DPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD 72

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N +T L   + +L  +  L +S N LK++  +I    S++ L      I ++   +  L 
Sbjct: 73  NQITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLS 129

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L+ L L+ N I  I    L     LQ +S+ N  +S
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            I+ L +I+ L L    I  +   L  L +L+V+ LD N+IT++   L  L  L+ LSI 
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG 159

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
              ++ L   + +L  L  L   +NK+  +   + S  +L E+   +N I ++   + N 
Sbjct: 160 NAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANT 216

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
            +L  + L N  I   P     +      +   + 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 13  VLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI 72
           +     I  +      L +   +    + +T        L  +  LS  G  +T + E +
Sbjct: 3   ITQPTAINVIF-PDPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGV 59

Query: 73  GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNN 132
             L NL+ L + +N++  L   + +   + EL+ + N +  + A I  L  +K+L L + 
Sbjct: 60  QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 133 NIGQIPANLLKDCKALQNISLHNNPIS 159
            I  +    L     LQ + L  N I+
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            ++ L N+  + L +N I  +   L    +L ++TL    IT+ P      + +  +   
Sbjct: 190 PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 93
            +     P TI         N++ N    +  
Sbjct: 249 PSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
           I  L N++ L L  N +  +   L +L +L  + L GN++ SLP+ +  +L  L+ L ++
Sbjct: 59  IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC 119
            N L  LP+ +   L NL  LN+++N+L+SLP+ +     +L EL  + N +  LP  + 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

Query: 120 N-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           + L  LK L L  N +  +P  +     +LQ I LH+NP
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 56  ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 115
            + ++    +T        L ++  +  +N+ +KS+   I    ++  L    N + ++ 
Sbjct: 22  IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS 79

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
           A +  L +L  L L  N +  +P  +      L+ + L  N
Sbjct: 80  A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 1e-18
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 7/160 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
               +   L    N            L+ L+ + L  N + +          +  L  L 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 63  NMLTCLP-----ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
             L  L       T     ++++LN+S+N L            ++ L  ++N I  +P  
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIPKD 468

Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           + +L  L+ L + +N +  +P  +     +LQ I LH+NP
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 7/151 (4%)

Query: 8   NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNML 65
             + L L  N I  L   ++  L  L+V+ L  NRI SL   +      LE L +  N L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQANDNLIGELPASICNLIH 123
             +      + +L  L++S N    LP     G+   L  L  +     +L       +H
Sbjct: 113 QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLH 154
           L  + L+  +   I     +  +      LH
Sbjct: 171 LSCILLDLVSY-HIKGGETESLQIPNTTVLH 200

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 7/168 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           IS L  ++ L L  N I  L  ++    Q L+ + +  NR+ ++      +  L  L + 
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLS 129

Query: 62  GNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAN--DNLIGELPAS 117
            N    LP     G+L  L  L +S  K + L     +   L  +  +     I      
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ 165
              + +   L L  +        +     AL ++ L N  ++ +  Q+
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 5   KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--ELGQLVRLERLSILG 62
              +++ L +  N ++ +      + SL+ + L  N    LP   E G L +L  L +  
Sbjct: 98  FNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 63  NMLTCLPETIGSLRNL--VLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC- 119
                L     +  +L  +LL++ +  +K          +   L    +        +  
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 120 -----NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
                  + L ++ LN+ N  ++   L +  +    +++    I  
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 13/168 (7%)

Query: 4   SKLINIQRLVLDDNHI-ERLPV----NLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLER 57
           S   +++++ +  N + E +      NL KL  +++     N +  +  E    L  L+ 
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKANNLLYINPEAFQNLPNLQY 108

Query: 58  LSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPESI--GSCYSLEELQANDNLIGE 113
           L I    +  LP+   I SL+ ++L    N  + ++  +   G  +    L  N N I E
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 114 LPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           +  S  N   L  L L +NNN+ ++P ++         + +    I  
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL--PDELGQLVRLERLSIL-GN 63
           N   L      +  +          L+ + +  N +  +   D    L +L  + I   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 64  MLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNL-IGELPA-SIC 119
            L  +      +L NL  L +SN  +K LP+           L   DN+ I  +   S  
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 120 NL-IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L      L LN N I +I  +     +  +     NN + 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 8/161 (4%)

Query: 4   SKLINIQRLVLDD-NHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSI 60
           S L  +  + ++  N++  +       L +L+ + +    I  LPD      ++   L I
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 61  LGNM-LTCLPETI--GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPA 116
             N+ +  +      G     V+L ++ N ++ +  S        E   +++N + ELP 
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 117 SIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
            +         L ++   I  +P+  L++ K L+  S +N 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE-LPASI- 118
            + +T +P  +   RN + L     KL+ + +        LE+++ + N + E + A + 
Sbjct: 18  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 119 CNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            NL  L  + +   NN+  I     ++   LQ + + N  I 
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.3 bits (200), Expect = 2e-18
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 17  NHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLR 76
             +    V   +   ++V+ L    +T L   L QL+ +  L +  N L  LP  + +LR
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 77  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLCLNNNNI 134
            L +L  S+N L+++   + +   L+EL   +N + +  A   + +   L  L L  N++
Sbjct: 487 CLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 135 GQIPANLLKDCKALQNISL 153
            Q      +  + L ++S 
Sbjct: 546 CQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.0 bits (199), Expect = 3e-18
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLER 57
             I  +  +  L+ +   ++     L  +  ++   LD  R   L        +   +  
Sbjct: 387 TIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 58  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
           L +    LT L   +  L  +  L++S+N+L++LP ++ +   LE LQA+DN +  +   
Sbjct: 446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503

Query: 118 ICNLIHLKSLCLNNNNIGQIPANL-LKDCKALQNISLHNNPIS 159
           + NL  L+ L L NN + Q  A   L  C  L  ++L  N + 
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 8e-14
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            + +L+ +  L L  N +  LP  L  L+ L+V+    N + ++   +  L RL+ L + 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516

Query: 62  GNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPE 93
            N L        + S   LVLLN+  N L     
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           ++ L N+  L LD+N ++ L  +L  L+ LK ++L+ N I+ +   L  L +LE L +  
Sbjct: 86  LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 143

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N +T +   +  L  L  L++ +N++  +   +     L+ L  + N I +L A +  L 
Sbjct: 144 NKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLK 200

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
           +L  L L +      P N   +      +   +  +
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           I  L N+ +L L+ N +  +   L  L++L  + LD N++  L   L  L +L+ LS+  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEH 121

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N ++ +   +  L  L  L + NNK+  +   +     L+ L   DN I ++   +  L 
Sbjct: 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLT 178

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162
            L++L L+ N+I  + A  L   K L  + L +       
Sbjct: 179 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
            ++L +I +++ +++ I+ +   +  L ++  + L+GN++T +   L  L  L  L +  
Sbjct: 42  QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N +  L  ++  L+ L  L++ +N +  +   +     LE L   +N I ++   +  L 
Sbjct: 100 NKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITV-LSRLT 156

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L +L L +N I  I    L     LQN+ L  N IS
Sbjct: 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
                   +  L    +    V   +L S+  +  + + I S+   +  L  + +L + G
Sbjct: 20  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 77

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N LT + + + +L+NL  L +  NK+K L  S+     L+ L    N I ++   + +L 
Sbjct: 78  NKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLP 134

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L+SL L NN I  I    L     L  +SL +N IS
Sbjct: 135 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 12  LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
            +     I+++  +           L    +T       +L  ++++    + +  + + 
Sbjct: 7   TITVPTPIKQIF-SDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QG 63

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
           I  L N+  L ++ NKL  + + + +  +L  L  ++N + +L  S+ +L  LKSL L +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121

Query: 132 NNIGQIPANLLKDCKALQNISLHNNPIS 159
           N I  I    L     L+++ L NN I+
Sbjct: 122 NGISDING--LVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +S+L  +  L L+DN I  +   L  L  L+ + L  N I+ L   L  L  L+ L +  
Sbjct: 152 LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS 209

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGELP 115
                  + I    NLV+ N   N   SL  PE I      E+     +L     
Sbjct: 210 QECL--NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 26/154 (16%)

Query: 8   NIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNM 64
               L L++N    L       KL  L+ +    N+IT + +        +  + +  N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 65  LTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
           L  +   +   L +L  L + +N++  +                             L  
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI----------------------GLSS 130

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           ++ L L +N I  +         +L  ++L  NP
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
            KL  ++++   +N I  +          +  + L  NR+ ++  ++   L  L+ L + 
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDN 109
            N +TC+   +   L ++ LL++ +N++ ++      + +SL  L    N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILG 62
            L +++ L+L  N I  +  +    L S+++++L  N+IT++       L  L  L++L 
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 63  NMLTC 67
           N   C
Sbjct: 163 NPFNC 167

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 84  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC--NLIHLKSLCLNNNNIGQIPANL 141
           SN KL  +PE I       EL+ N+N    L A+     L  L+ +  +NN I  I    
Sbjct: 19  SNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 142 LKDCKALQNISLHNNPIS 159
            +    +  I L +N + 
Sbjct: 77  FEGASGVNEILLTSNRLE 94

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 56  ERLSILGNMLTCLPETIG--SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 113
             L +  N  T L  T     L  L  +N SNNK+  + E                    
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE---------------- 78

Query: 114 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                     +  + L +N +  +   + K  ++L+ + L +N I+
Sbjct: 79  ------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 4   SKLINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDELG---QLVRLERLS 59
           SK+     L   +N +      N G L  L+ + L  N++  L        Q+  L++L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 60  ILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
           I  N ++           ++L+ LN+S+N L            ++ L  + N I  +P  
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQ 439

Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           +  L  L+ L + +N +  +P  +     +LQ I LH NP
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 7/161 (4%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65
               L +  N+I  L  + +  L  L+++ +  NRI  L          LE L +  N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQANDNLIGELPASICNLIH 123
             +        NL  L++S N   +LP     G+   L+ L  +   + +        ++
Sbjct: 82  VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 164
           +  + L             +  +     SLH    +  +F 
Sbjct: 140 ISKVLLVLGET-YGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 10/185 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           I  L  ++ L++  N I+ L ++     Q L+ + L  N++  +       V L+ L + 
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLS 98

Query: 62  GNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPESI---GSCYSLEELQANDNLIGELPA 116
            N    LP     G++  L  L +S   L+          +   +  +        E P 
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 117 SICNL--IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEA 174
            + +     L  +   N     I    +K    L+  ++            +    + + 
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 175 RRRKK 179
             +  
Sbjct: 219 NPKLS 223

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 17/184 (9%)

Query: 5   KLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             +N++ L L  N  + LP+    G +  LK + L    +          + + ++ ++ 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 63  NMLTCLPETIGSLRNLVLLN-----VSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL-- 114
                  E    L++    +      +N +   + + S+ +  +LE       L      
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 115 -----PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 169
                 A +     L +L LNN        + ++  + + + ++    IS  + Q    F
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIET--TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 170 EEFE 173
            +F+
Sbjct: 266 RDFD 269

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 77  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIG 135
           +  L++ S N L  +P+ +        L  + N I EL  S I +L  L+ L +++N I 
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 136 QIPANLLKDCKALQNISLHNNPIS 159
            +  ++ K  + L+ + L +N + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV 82

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 12/158 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            I KL  + +L+   N+I  L   L +  +L  +  D N++T+L   +  L +L  L+  
Sbjct: 59  GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N LT L   +     L  LN + N L  +   +     L EL  + N        +   
Sbjct: 115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQ 169

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L +L  + N I ++    +   K L  ++   N I+
Sbjct: 170 TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           ++S+  N+  L  D N +  L   +  L  L  +  D N++T L   + Q   L  L+  
Sbjct: 80  DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N LT +   +     L  L+   NK  +  + +     L  L  + N I EL   +   
Sbjct: 136 RNTLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQN 190

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L  L  + NNI ++    L     L  +   +N ++
Sbjct: 191 KLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           +++    +  L    N I  L   + + + L  +  D N IT L   L Q ++L  L   
Sbjct: 165 DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCS 220

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N LT +   +  L  L   + S N L  L  S  +   L  L      + E+  +  + 
Sbjct: 221 SNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEIDLT--HN 274

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 166
             L           +I    +     L  +      I+     Q 
Sbjct: 275 TQLIYFQAEGCR--KIKELDVTHNTQLYLLDCQAAGITELDLSQN 317

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 12/158 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           ++S+   + RL  D N+I +L   L +   L  +    N++T +   +  L +L      
Sbjct: 186 DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCS 241

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
            N LT L   + +L  L  L+     L  +   +     L   QA      +    + + 
Sbjct: 242 VNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHN 296

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
             L  L      I ++    L     L  + L+N  ++
Sbjct: 297 TQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 7e-15
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +S+   +  L    N +  +   +     L  +    N+  +  D +    +L  L    
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSF 179

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N +T L   +   + L  LN   N +  L   +     L  L  + N + E+   +  L 
Sbjct: 180 NKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLT 233

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L     + N + ++  + L     L  +      + 
Sbjct: 234 QLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 9e-14
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 8/151 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +S L  +  L      +  +   L     L     +G R     D +    +L  L    
Sbjct: 250 VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD-VTHNTQLYLLDCQA 306

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
             +T L   +     LV L ++N +L  L   +     L+ L   +  I +   S+  + 
Sbjct: 307 AGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIP 361

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISL 153
            L +          +P   L +      +S 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 7/162 (4%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           +++    +     +     +  +++     L ++      IT L   L Q  +L  L + 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLN 326

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 121
              LT L   +     L  L+  N  ++     +G   +L      +     +P      
Sbjct: 327 NTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 163
             L ++ ++ + + Q    +  +           N I+ +  
Sbjct: 384 NSL-TIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 29  LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 88
             S      +     ++     QL  L  L    + +T +   I  L  L  L  ++N +
Sbjct: 20  FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76

Query: 89  KSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148
            +L   +    +L  L  + N +  L   +  L  L  L  + N + ++    +     L
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLL 129

Query: 149 QNISLHNNPIS 159
             ++   N ++
Sbjct: 130 TYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
           ++S+   +  L L++  +  L   +     LK ++     I      +G++  L      
Sbjct: 313 DLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEA 369

Query: 62  GNMLTCLPETIGSLRNLV------LLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 115
                 +P+   +  +L       LL+   N +   P   G           +NL  + P
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429

Query: 116 A 116
           A
Sbjct: 430 A 430

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
              L N  +  L    +  L V+  +L  ++    D + I SL   +     L+ L +  
Sbjct: 15  DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSH 72

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N ++ L   +  L  L  L+V+ N+LK+L  +      L  L  ++N + +   S+ +L 
Sbjct: 73  NQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTD-SLIHLK 128

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           +L+ L + NN +  I    L     L+ + LH N I+
Sbjct: 129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +    N++ L L  N I  L   L  L  L+ ++++ NR+ +L         L RL +  
Sbjct: 59  MQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDN 115

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLI 122
           N L    +++  L+NL +L++ NNKLKS+   +G    LE L  + N I      +  L 
Sbjct: 116 NELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTG-GLTRLK 172

Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
            +  + L        P     +      +   + 
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 37  LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 96
                I  +      L    + ++    +T L  +   L  +   N  N+ ++SL   + 
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGMQ 60

Query: 97  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
              +L+EL  + N I +L   + +L  L+ L +N N +  +          L  + L NN
Sbjct: 61  FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNN 116

Query: 157 PIS 159
            + 
Sbjct: 117 ELR 119

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
             +++ ++  + L + ++  L   +    ++K +T++    T+  + +  L  LERL I+
Sbjct: 39  TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIM 96

Query: 62  GNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIGELPASIC 119
           G  +T      +  L +L LL++S++    S+   I +   +  +  + N        + 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            L  LKSL +  + +       ++D   L  +   +  I 
Sbjct: 157 TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSIL 61
           I    NI+ L +++ H       +  L +L+ + + G  +TS     L  L  L  L I 
Sbjct: 62  IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 62  GNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
            +         I +L  +  +++S N   +    + +   L+ L    + + +    I +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG-IED 179

Query: 121 LIHLKSLCLNNNNIGQI 137
              L  L   +  IG  
Sbjct: 180 FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 26/154 (16%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN 63
           S        +L  +      +   ++ SL  +TL    +T L   +     ++ L+I   
Sbjct: 20  STFKAYLNGLLGQSSTA--NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNI 76

Query: 64  MLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 123
             T     I  L NL  L +    + S                      +   ++  L  
Sbjct: 77  HATNY-NPISGLSNLERLRIMGKDVTS----------------------DKIPNLSGLTS 113

Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           L  L ++++         +     + +I L  N 
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 26/151 (17%)

Query: 10  QRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC 67
           Q L L DN I +L   +   L +LK + L  N++ +LP  +   L +L  L +  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 68  LPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKS 126
           LP  +   L +L  L +  NKL  LP  I                         L HL  
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIE-----------------------RLTHLTH 139

Query: 127 LCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           L L+ N +  IP        +L +  L  NP
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG 62
            LIN++ L L  N +  LPV +   L  L V+ L  N++T LP  +  +LV L+ L +  
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 93
           N LT LP  I  L +L  L +  N+LKS+P 
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 6   LINIQRLVLDDNHIERLPVNL---GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
                       + +          +   +K   L  ++I +L   +      LE+L++ 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 62  GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI- 118
            N +  + +     L +L+ LN+S N L S+   +  +   LE L  + N I  L     
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
             L +LK L L+ N +  +P  +     +LQ I LH NP
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 5   KLINIQRLVLDDNHIERLP-------VNLGKLQSL-------KVMTLDGNRITSLPDEL- 49
           K  +I  L L  N  +          +   K+QSL          +          +   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 50  --GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQ 105
              +   ++   +  + +  L +++     +L  L ++ N++  + ++       L +L 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 106 ANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
            + N +G + + +  NL  L+ L L+ N+I  +          L+ ++L  N + 
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRI-TSLPDEL-GQLVRLERLSILGNM 64
           ++  + L  N I  L      +LQ L+ + ++       + +     L  L  L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 65  LTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGS---CYSLEELQANDNLIGELP--ASI 118
              L       L NL +L ++   L     S        SLE L   DN I ++   +  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 119 CNLIHLKSLCLNNNNIGQIPANLLKDC--KALQNISLHNNPISM 160
            N+     L L  N +  I    L +   K    + L +  +  
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 21/183 (11%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLS 59
             L ++  L LD N   +L       L +L+V+TL    +       +    L  LE L 
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 60  ILGNMLTCL-PETI-GSLRNLVLLNVSNNKLKSLPESI---GSCYSLEELQANDNLIGEL 114
           +  N +  + P +   ++R   +L+++ NK+KS+ E             L+ +   + ++
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 115 PASIC---------NLIHLKSLCLNNNNIGQIPANL---LKDCKALQNISLHNNPISMDQ 162
                             + +L L+ N   +  A           +Q++ L N+      
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 163 FQQ 165
           F  
Sbjct: 256 FGH 258

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 6e-12
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSIL 61
           S   ++++L L  N I ++  N    L  L  + L  N + S+   +   L +LE L + 
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDN 109
            N +  L + +   L NL  L +  N+LKS+P+ I     SL+++  + N
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 20/175 (11%)

Query: 5   KLINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDE----LGQLVRLERL- 58
           +L +I    +++  +      N  K  S+  + L GN       +         +++ L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 59  ---------SILGNMLTCLPETI---GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQ 105
                    S                     +   ++S +K+ +L +S+      LE+L 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 106 ANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              N I ++  +    L HL  L L+ N +G I + + ++   L+ + L  N I 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 4   SKLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
             L  ++ L L  NHI  L       L +LK + LD N++ S+PD    +L  L+++ + 
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403

Query: 62  GNMLTCLPETIGSLRN 77
            N   C    I  L  
Sbjct: 404 TNPWDCSCPRIDYLSR 419

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 6   LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL--PDELGQLVRLERLSILG 62
           L   +RL+L  N+I  +  +    L+ L+++ L           +    L  L  L +  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 63  NMLTCLPE-TIGSLRNLVLLNVSNNKLKSL---PESIGSCYSLEELQANDNLIGELP--A 116
           + +  L       L +L  L +    L           +  +L  L  + N I  L    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHNNPISMDQF 163
           S   L  LKS+  ++N I  +  + L+  +   L   SL  N +     
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 5e-15
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 30/182 (16%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
             L +++ L L  N I ++       L +L+V+ L  N +  L       L ++  + + 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 62  GNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP----- 115
            N +  + + T   L  L  L++ +N L ++        S+ ++  + N +  LP     
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLT 402

Query: 116 -----------------ASICNLIHLKSLCLNNNNIGQIPAN-LLKDCKALQNISLHNNP 157
                              +  + HL+ L LN N       +    +  +L+ + L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 158 IS 159
           + 
Sbjct: 463 LQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 17/166 (10%)

Query: 4   SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN 63
             L  +Q L L DN +  +      + S+  + L GN++ +LP      +    + +  N
Sbjct: 359 KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPK---INLTANLIHLSEN 411

Query: 64  MLTCLPET--IGSLRNLVLLNVSNNKLKSLPES--IGSCYSLEELQANDNLIGELPASIC 119
            L  L     +  + +L +L ++ N+  S           SLE+L   +N++     +  
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 120 ------NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
                  L HL+ L LN+N +  +P  +     AL+ +SL++N ++
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 19/178 (10%)

Query: 5   KLINIQRLVLDDNHIERLPVN-------------LGKLQSLKVMTLDGNRITSLPDEL-- 49
           + + ++ L +  N                     L     +       + I         
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 50  -GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQA 106
                 +  L +    +  L      +L++L +LN++ NK+  + +       +L+ L  
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 107 NDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 163
           + NL+GEL +S    L  +  + L  N+I  I     K  + LQ + L +N ++   F
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSL------PDELGQLVR 54
           + ++ ++Q L+L+ N       +    +  SL+ + L  N +          D    L  
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 55  LERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 113
           L+ L +  N L  LP      L  L  L++++N+L  L  +     +LE L  + N +  
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540

Query: 114 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160
               +   + +  +  +N  I +   +   +     N+++   P  +
Sbjct: 541 PNPDVFVSLSVLDI-THNKFICECELSTFINWLNHTNVTIAGPPADI 586

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 30/186 (16%)

Query: 4   SKLINIQRLVLDDNHIERLPVN---LGKLQSLKVMTLDGNRITSLP--DELGQLVRLERL 58
             L ++  L L    +    +       L++L  + L  N+I SL      G+L  L+ +
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 59  SILGNMLTCLP-ETIGSLRNLVL--LNVSNNKLKSLPE-SIGSCY------SLEELQAND 108
               N +  +    +  L+   L   +++ N L S      G C        LE L  + 
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 109 NLIGELPASICN-------------LIHLKSLCLNNNNIGQIPANLLKDCK--ALQNISL 153
           N          +               H+       +NI     N        +++++ L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 154 HNNPIS 159
            +  + 
Sbjct: 274 SHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 39  GNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSL--PESI 95
              +T +P  L      ERL +  N +  +  +    L  L LL + +         E+ 
Sbjct: 13  FCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 96  GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNI--GQIPANLLKDCKALQNIS 152
            +  +L  L    + I  L       L HL  L L    +    +     ++ KAL  + 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 153 LHNNPIS 159
           L  N I 
Sbjct: 130 LSKNQIR 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLT 66
           ++  L LD N    +P  L   + L ++ L  NRI++L ++    + +L  L +  N L 
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 67  CLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDN 109
           C+P      L++L LL++  N +  +PE       +L  L    N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 22/104 (21%)

Query: 56  ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 115
             L + GN  T +P+ + + ++L L+++SNN++ +L     S                  
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS------------------ 75

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
               N+  L +L L+ N +  IP       K+L+ +SLH N IS
Sbjct: 76  ----NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGN-RITSLPDEL-GQLVRLERLSILGN- 63
           + Q L L + H+  +P +    L ++  + +  +  +  L       L ++  + I    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 64  MLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNL-IGELPA-SI 118
            LT +  + +  L  L  L + N  LK  P+   + S      L+  DN  +  +P  + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 119 CNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
             L     +L L NN    +        K L  + L+ N 
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 10/162 (6%)

Query: 4   SKLINIQRLVLDDN-HIERLPVN-LGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLS 59
             L  +  + + +  ++  +  + L +L  LK + +    +   PD   +        L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 60  ILGNM-LTCLPE-TIGSLRN-LVLLNVSNNKLKSLPESIGSCYSLEELQANDN-LIGELP 115
           I  N  +T +P      L N  + L + NN   S+     +   L+ +  N N  +  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 116 ASI-CNLIH-LKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155
                 +      L ++  ++  +P+  L+  K L   +   
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 16/110 (14%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 55  LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL-IG 112
            E   +    +  +P       +   L +    L+++P  +  +  ++  +  + ++ + 
Sbjct: 13  EEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 113 ELPASI-CNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPISM 160
           +L +    NL  +  + + N  N+  I  + LK+   L+ + + N  + M
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 25/151 (16%)

Query: 10  QRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC 67
             L L+ N ++ LP     +L SL  + L GN++ SLP+ +  +L  L  L++  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 68  LPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKS 126
           LP  +   L  L  L ++ N+L+SLP+ +                         L  LK 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFD----------------------KLTQLKD 128

Query: 127 LCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           L L  N +  +P  +     +LQ I LH+NP
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG 62
           +L ++ +L L  N ++ LP  +  KL SL  + L  N++ SLP+ +  +L +L+ L++  
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 63  NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ 105
           N L  LP+ +   L  L  L +  N+LKS+P+  G    L  LQ
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQ 151

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLP----DELGQLVRLERLS 59
           KL ++  L L  N ++ LP  +  KL  LK + L+ N++ SLP    D+L Q   L+ L 
Sbjct: 74  KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ---LKDLR 130

Query: 60  ILGNMLTCLPETI-GSLRNLVLLNVSNN 86
           +  N L  +P+ +   L +L  + + +N
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 25  NLGKLQSLKVMTLDG--NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82
                   + + L G    I  +   L  L   + L++  N +  +  ++  + NL +L+
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILS 76

Query: 83  VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NL 141
           +  N +K +        +LEEL  + N I  L + I  L++L+ L ++NN I      + 
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 142 LKDCKALQNISLHNNPISMDQFQQME 167
           L     L+++ L  NP+  D  +   
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
           +S + N++ L L  N I+++        +L+ + +  N+I SL   + +LV L  L +  
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN 124

Query: 63  NMLTCLPE--TIGSLRNLVLLNVSNNKL 88
           N +T   E   + +L  L  L ++ N L
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73
           L    IE+           + + L G +I  + +    L + + +    N +  L +   
Sbjct: 4   LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 74  SLRNLVLLNVSNNKLKSLPESIG-SCYSLEELQANDNLIGELP--ASICNLIHLKSLCLN 130
            LR L  L V+NN++  + E +  +   L EL   +N + EL     + +L  L  LC+ 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 131 NNNIGQIP 138
            N +    
Sbjct: 122 RNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 25/126 (19%)

Query: 34  VMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 93
           ++ L    I     +    VR   L + G  +  +     +L     ++ S+N+++ L  
Sbjct: 1   MVKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 94  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 153
                                      L  LK+L +NNN I +I   L +    L  + L
Sbjct: 58  ----------------------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 154 HNNPIS 159
            NN + 
Sbjct: 96  TNNSLV 101

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 10  QRLVLDDNHIERLPVN--LGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLT 66
             L+L+DN + R+  +   G+L  L  + L  N++T +          ++ L +  N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 67  CLPETI-GSLRNLVLLNVSNNKLKSLPE 93
            +   +   L  L  LN+ +N++  +  
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 56  ERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIG 112
             L +  N L  +      G L +LV L +  N+L  +  +       ++ELQ  +N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 113 ELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
           E+   +   L  LK+L L +N I  +     +   +L +++L +NP
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG 62
           +L ++ +L L  N +  +  N       ++ + L  N+I  + +++   L +L+ L++  
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111

Query: 63  NMLTCLPE----TIGSLRNLVLLN 82
           N ++C+       + SL +L L +
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLAS 135

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 16/163 (9%)

Query: 8   NIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDE-----LGQLVRLERLSIL 61
            ++ L +   H             +L  + L  N               +   L+ L++ 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 62  GNMLTCLPETIGSL----RNLVLLNVSNNKLKSLPESIGSCY--SLEELQANDNLIGELP 115
              +        +L      L  L++S+N L+    +    +   L  L  +   + ++P
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
             +     L  L L+ N + + P+    +   + N+SL  NP 
Sbjct: 270 KGL--PAKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 2   EISKLINIQRLVLDDNHIERLP-----VNLGKLQSLKVMTLDGNRITSLPDE----LGQL 52
           ++     +  L L DN           +   K  +L+V+ L    + +            
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 53  VRLERLSILGNMLTCLPETIGS--LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL 110
           V+L+ L +  N L              L  LN+S   LK +P+ + +   L  L  + N 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNR 285

Query: 111 IGELPASICNLIHLKSLCLNNNNI 134
           +   P S   L  + +L L  N  
Sbjct: 286 LDRNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 20/171 (11%)

Query: 6   LINIQRLVLDDNHIERLPVNLGKLQ-----SLKVMTLDGNRITSLP-DELGQLVRLERLS 59
             ++  L L +         L +LQ      LKV+++      +   +++     L  L 
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 60  ILGNMLT---CLPETI--GSLRNLVLLNVSNNKLKSLPESIGSC----YSLEELQANDNL 110
           +  N       L   +       L +L + N  +++      +       L+ L  + N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 111 IGELPASI--CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           + +   +        L SL L+   + Q+P  L      L  + L  N + 
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 19/178 (10%)

Query: 1   MEISKLINIQRLVLDDNHIER---LPVNLGKLQSLKVMTLDGNRITSLPDELGQLV---- 53
           + +  +  +Q L L++  +      P+       L ++ L      +    L +L     
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 54  -RLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCY-----SLEELQA 106
             L+ LSI          E +     L  L++S+N        I +       +L+ L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 107 NDN----LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKD-CKALQNISLHNNPIS 159
            +       G   A     + L+ L L++N++         D    L +++L    + 
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 55  LERLSILGNMLTCLPETIG--SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG 112
           +    I   +L      +G   L+ L L N+        P    +   L  L   +    
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 113 ELPASICNLI-----HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
              A +  L       LK L +   +        ++   AL  + L +NP  
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 24/127 (18%)

Query: 33  KVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKS 90
             + L+ N++ SLP  +  +L +L +LS+  N +  LP+ +   L  L +L +  NKL+S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 91  LPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 150
           LP  +                         L  LK L L+ N +  +P  +     +LQ 
Sbjct: 91  LPNGVFD----------------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128

Query: 151 ISLHNNP 157
           I LH NP
Sbjct: 129 IWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 10  QRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC 67
            RL L+ N ++ LP  +  KL  L  ++L  N+I SLPD +  +L +L  L +  N L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 68  LPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ 105
           LP  +   L  L  L +  N+LKS+P+  G    L  LQ
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQ 127

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 5   KLINIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILG 62
           KL  + +L L  N I+ LP  +  KL  L ++ L  N++ SLP+ +  +L +L+ L++  
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109

Query: 63  NMLTCLPE----TIGSLRNLVLLN 82
           N L  +P+     + SL+ + L  
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHT 133

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNR-ITSLPDE-LGQLVRLERLSILGNMLTCL-PE 70
             D  ++ L  +L   ++L  + ++  + +  L    L  L  L  L+I+ + L  + P+
Sbjct: 16  TRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 71  TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109
                  L  LN+S N L+SL        SL+EL  + N
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 65  LTCLPETIGSLRNLVLLNVSNNK-LKSLP-ESIGSCYSLEELQANDNLIGELPASI-CNL 121
                  +    NL  L + N + L+ L    +     L  L    + +  +        
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
             L  L L+ N +  +    ++    LQ + L  NP+   
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 3   ISKLINIQRLVLDDN-HIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLS 59
           +    N+  L +++  H++ L +  L  L  L+ +T+  + +  +  +      RL RL+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 60  ILGNMLTCLPETIGSLRNLVLLNVSNNKL 88
           +  N L  L        +L  L +S N L
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-07
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 84  SNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANL 141
           + +        +    +L EL   N   +  L    +  L  L++L +  + +  +  + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 142 LKDCKALQNISLHNNPIS 159
                 L  ++L  N + 
Sbjct: 76  FHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 4   SKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG 62
             L  ++ L +  + +  +  +       L  + L  N + SL  +  Q + L+ L + G
Sbjct: 53  RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

Query: 63  NMLTC 67
           N L C
Sbjct: 113 NPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 97  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHN 155
             +    L+   +   +    +    +L  L + N   +  +    L+    L+N+++  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 156 NPIS 159
           + + 
Sbjct: 66  SGLR 69

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 35  MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 94
           M +       L +     VR   L    +    +        NL  L++ N  L S+  +
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN 66

Query: 95  IGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNIS 152
           +     L++L+ ++N I      +   L +L  L L+ N +  I     LK  + L+++ 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 153 LHNNPIS 159
           L N  ++
Sbjct: 127 LFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNR--ITSLPDELGQLVRLERLSILGNMLTCLPET 71
           +D      L +      +++ + LD  +     +     + V LE LS++   L  +   
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN 66

Query: 72  IGSLRNLVLLNVSNNKLKSLPESIG-SCYSLEELQANDNLIGELP--ASICNLIHLKSLC 128
           +  L  L  L +S N++    + +     +L  L  + N + ++     +  L  LKSL 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 129 LNNNNIGQIP 138
           L N  +  + 
Sbjct: 127 LFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
            ++ +N++ L L +  +  +  NL KL  LK + L  NRI    D L + L  L  L++ 
Sbjct: 45  TAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 62  GNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPE 93
           GN L  +     +  L  L  L++ N ++ +L +
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 58  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
           L    +    L         L  L+  N  L S+  ++     L++L+ +DN +      
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 118 IC-NLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQ 162
           +     +L  L L+ N I  +     LK  + L+++ L N  ++   
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 74  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 133
            ++ LVL N  +N+ K L         LE L   +  +  + A++  L  LK L L++N 
Sbjct: 18  DVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75

Query: 134 IGQIPANLLKDCKALQNISLHNNPIS 159
           +      L + C  L +++L  N I 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 3   ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLERLSIL 61
             +   ++ L   +  +  +  NL KL  LK + L  NR++   + L +    L  L++ 
Sbjct: 38  TDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 62  GNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPE 93
           GN +  L     +  L NL  L++ N ++ +L +
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 25/121 (20%)

Query: 38  DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIG 96
            G  + S+P   G     + L +  N +T L   +   L  L  L++ NN+L  LP  + 
Sbjct: 17  SGKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74

Query: 97  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
                                   L  L  L LN+N +  IP     + K+L +I L NN
Sbjct: 75  D----------------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

Query: 157 P 157
           P
Sbjct: 113 P 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 8   NIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLP----DELGQLVRLERLSILG 62
             Q L L DN I +L   +  +L  L  + LD N++T LP    D+L Q   L +LS+  
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ---LTQLSLND 87

Query: 63  NMLTCLPETI----GSLRNLVLLN 82
           N L  +P        SL ++ LLN
Sbjct: 88  NQLKSIPRGAFDNLKSLTHIWLLN 111

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 25/121 (20%)

Query: 38  DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIG 96
              R+ S+P   G     +RL +  N +T L   +   L NL  L  ++NKL ++P  + 
Sbjct: 20  QNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77

Query: 97  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
                                   L  L  L LN+N++  IP     + K+L +I L+NN
Sbjct: 78  D----------------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

Query: 157 P 157
           P
Sbjct: 116 P 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 31/91 (34%)

Query: 8  NIQRLVLDDNHIERLPVNL-GKLQSLKVMTLDGNRITSLP----DELGQLVRLERLSILG 62
          + QRL L++N I +L   +   L +L+ +  + N++T++P    D+L QL +        
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ-------- 85

Query: 63 NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 93
                            L++++N LKS+P 
Sbjct: 86 ------------------LDLNDNHLKSIPR 98

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 40/187 (21%)

Query: 3   ISKLINIQRLVLDDNHI-----ERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLER 57
           + +  +++ +VL  N I       L  N+   + L++          + DE+      E 
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-----PEA 82

Query: 58  LSILGNMLTCLPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCYSLEELQANDNLIG 112
           L +L   L            L  + +S+N       + L + +     LE L  ++N +G
Sbjct: 83  LRLLLQALL-------KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135

Query: 113 E--------------LPASICNLIHLKSLCLNNNNIG----QIPANLLKDCKALQNISLH 154
                          +     N   L+S+    N +     +  A   +  + L  + + 
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195

Query: 155 NNPISMD 161
            N I  +
Sbjct: 196 QNGIRPE 202

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 25/130 (19%)

Query: 55  LERLSILGNMLT-----CLPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCYSLEEL 104
           +E  S+  + +T      +   +    ++  + +S N +     + L E+I S   LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 105 QANDNLIGELPA-----------SICNLIHLKSLCLNNNNIG----QIPANLLKDCKALQ 149
           + +D   G +             ++     L ++ L++N  G    +   + L     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 150 NISLHNNPIS 159
           ++ LHNN + 
Sbjct: 126 HLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 29/172 (16%)

Query: 8   NIQRLVLDDNHIERLPVN-----LGKLQSLKVMTLDGNRITS------LPDELGQLVRLE 56
            ++ ++   N +E   +          + L  + +  N I        L + L     L+
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 57  RLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCY--SLEEL 104
            L +  N  T      L   + S  NL  L +++  L      ++ ++        L+ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 105 QANDNLIGELPASI------CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 150
           +   N I               +  L  L LN N   +    + +  +    
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 32/189 (16%)

Query: 3   ISKLINIQRLVLDDNHI-----ERLPVNLGKLQSLKVMTLDGNRIT-----SLPDELGQL 52
           +  L   Q + LDD  +     + +   L    +L  + L  N +       +   L   
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 53  -VRLERLSILGNMLT-----CLPETIGSLRNLVLLNVSNNKL-----KSLPESIGS-CYS 100
             ++++LS+    LT      L  T+ +L  L  L++S+N L     + L E +      
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 101 LEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIG----QIPANLLKDCKA-LQN 150
           LE+LQ     +       L + +      K L ++NN+I     ++    LKD    L+ 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 151 ISLHNNPIS 159
           + L +  ++
Sbjct: 204 LKLESCGVT 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 32/184 (17%)

Query: 8   NIQRLVLDDNHI-----ERLPVNLGKLQSLKVMTLDGNRITS------LPDELGQLVRLE 56
            IQ+L L +  +       L   L  L +L+ + L  N +            L    RLE
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 57  RLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKL-----KSLPESIGSC-YSLEELQ 105
           +L +    L+      L   + +  +   L VSNN +     + L + +      LE L+
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 106 ANDNLIGE-----LPASICNLIHLKSLCLNNNNIG-----QIPANLLKDCKALQNISLHN 155
                +       L   + +   L+ L L +N +G     ++   LL     L+ + +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 156 NPIS 159
             I+
Sbjct: 266 CGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/153 (14%), Positives = 58/153 (37%), Gaps = 23/153 (15%)

Query: 30  QSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLT-----CLPETIGSLRNLVLLN 82
             ++ + +    ++     + L  L + + + +    LT      +   +     L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 83  VSNNKL-----KSLPESIGSCY-SLEELQANDNLIGE-----LPASICNLIHLKSLCLNN 131
           + +N+L       + + + +    +++L   +  +       L +++  L  L+ L L++
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 132 NNIG-----QIPANLLKDCKALQNISLHNNPIS 159
           N +G      +   LL     L+ + L    +S
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 32/184 (17%)

Query: 8   NIQRLVLDDNHI-----ERLPVNLGKLQSLKVMTLDGNRIT-----SLPDELGQ-LVRLE 56
            ++ L + +  I       L   L   +SLK ++L GN +       L + L +   +LE
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 57  RLSILGNMLT-----CLPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCYS-LEELQ 105
            L +     T          +   R L+ L +SNN+L     + L + +G   S L  L 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 106 ANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPANLLKD-----CKALQNISLHN 155
             D  + +     L A++     L+ L L+NN +G      L +        L+ + L++
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 156 NPIS 159
              S
Sbjct: 437 IYWS 440

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 66/210 (31%)

Query: 2   EISKLINIQR-----LVLDD----NHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQL 52
           E+ +L+  +      LVL +            NL   + L + T        L       
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLS-CKIL-LTTRFKQVTDFLSAATTTH 288

Query: 53  VRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAND---N 109
           + L+  S     LT   E        +LL   + + + LP         E L  N    +
Sbjct: 289 ISLDHHS---MTLT-PDEVKS-----LLLKYLDCRPQDLPR--------EVLTTNPRRLS 331

Query: 110 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI---SLHN-NPISMDQFQQ 165
           +I E          ++      +N   +      +C  L  I   SL+   P    ++++
Sbjct: 332 IIAES---------IRDGLATWDNWKHV------NCDKLTTIIESSLNVLEP---AEYRK 373

Query: 166 MEGFEEFEARRRKKFDKQIDSNVMISSKGL 195
           M  F+         F      +  I +  L
Sbjct: 374 M--FDRLSV-----FPP----SAHIPTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.03
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.15
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.11
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4.7e-22  Score=150.86  Aligned_cols=156  Identities=25%  Similarity=0.348  Sum_probs=82.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc-ccchhhh--------
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIG--------   73 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~--------   73 (201)
                      +.++++|++|++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|++|++++|... .+|..+.        
T Consensus       100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            4445566666666666555555555566666666666666555555555555555555554322 2333322        


Q ss_pred             -cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEe
Q 028942           74 -SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS  152 (201)
Q Consensus        74 -~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~  152 (201)
                       .+++|++|++++|.+..+|..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+.......+..+++|+.|+
T Consensus       180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence             2455555555555555555555555555555555555555555555555555555555544222222244455555555


Q ss_pred             cccCCC
Q 028942          153 LHNNPI  158 (201)
Q Consensus       153 l~~n~l  158 (201)
                      +.+|.+
T Consensus       260 L~~n~~  265 (328)
T 4fcg_A          260 LKDCSN  265 (328)
T ss_dssp             CTTCTT
T ss_pred             CCCCCc
Confidence            555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.5e-20  Score=138.86  Aligned_cols=161  Identities=30%  Similarity=0.512  Sum_probs=133.7

Q ss_pred             ccccCCCccEEecCCCcCcccCcc-ccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNL   78 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   78 (201)
                      .|.++++|++|++++|.++.++.. |..+++|+.|++++|.+..++.. +..+++|++|++++|.++.+++ .+..+++|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            467788888888888888877654 57788888888888888877543 5678888899998888888754 46788899


Q ss_pred             CEEEeeCCCCCcCccc-ccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           79 VLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        79 ~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      ++|++++|.+..++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            9999999988887653 6788999999999999988875 4777899999999999999888887888999999999999


Q ss_pred             CCChhh
Q 028942          157 PISMDQ  162 (201)
Q Consensus       157 ~l~~~~  162 (201)
                      ++.|+.
T Consensus       216 ~~~c~c  221 (270)
T 2o6q_A          216 PWDCTC  221 (270)
T ss_dssp             CBCCSS
T ss_pred             CeeCCC
Confidence            998775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.1e-20  Score=139.75  Aligned_cols=171  Identities=31%  Similarity=0.498  Sum_probs=144.9

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLV   79 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~   79 (201)
                      .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++.. +..++.|++|++++|.++.+++. +..+++|+
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            4677899999999999988864 788899999999999999987654 67899999999999999988654 67889999


Q ss_pred             EEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCC
Q 028942           80 LLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP  157 (201)
Q Consensus        80 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~  157 (201)
                      +|++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            99999999998765 457899999999999999988654 5788999999999999998888878999999999999999


Q ss_pred             CChhhhccccChhHHHHHHh
Q 028942          158 ISMDQFQQMEGFEEFEARRR  177 (201)
Q Consensus       158 l~~~~~~~l~~~~~l~~~~~  177 (201)
                      +.+..    +.+..+....+
T Consensus       217 ~~~~~----~~l~~l~~~~n  232 (272)
T 3rfs_A          217 WDCTC----PGIRYLSEWIN  232 (272)
T ss_dssp             BCCCT----TTTHHHHHHHH
T ss_pred             ccccC----cHHHHHHHHHH
Confidence            88653    34555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=2.4e-21  Score=146.93  Aligned_cols=169  Identities=22%  Similarity=0.318  Sum_probs=144.9

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCC-ccCchhhh---------CcCCCCEEEecCCcCcccchh
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRI-TSLPDELG---------QLVRLERLSILGNMLTCLPET   71 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l-~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~   71 (201)
                      +|.++++|++|++++|.+..+|..+..+++|+.|++++|.+ ..+|..+.         .+++|++|++++|.++.+|..
T Consensus       122 ~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~  201 (328)
T 4fcg_A          122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS  201 (328)
T ss_dssp             CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred             HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence            47889999999999999999999999999999999999654 46666554         389999999999999999999


Q ss_pred             hhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcC-CccChhhhhcCccCC
Q 028942           72 IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ  149 (201)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~  149 (201)
                      +..+++|++|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+ ..+|.. +..+++|+
T Consensus       202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~  280 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLE  280 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCC
T ss_pred             hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCC
Confidence            99999999999999999999888999999999999998765 6777888999999999999887 556654 78999999


Q ss_pred             eEecccCCCChhhhccccChhH
Q 028942          150 NISLHNNPISMDQFQQMEGFEE  171 (201)
Q Consensus       150 ~l~l~~n~l~~~~~~~l~~~~~  171 (201)
                      .|++++|.+.......+..++.
T Consensus       281 ~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             EEECTTCTTCCCCCGGGGGSCT
T ss_pred             EEeCCCCCchhhccHHHhhccC
Confidence            9999999877554444444333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=7.3e-21  Score=141.52  Aligned_cols=160  Identities=30%  Similarity=0.460  Sum_probs=95.3

Q ss_pred             cccCCCccEEecCCCc-Cccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942            3 ISKLINIQRLVLDDNH-IERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNL   78 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   78 (201)
                      |.++++|++|++++|. +..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+++ .+..+++|
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  155 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL  155 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence            3344444444444443 4443 33444455555555555555444 2334455555566665555555543 24555666


Q ss_pred             CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      ++|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            666666666665543 355566666666666666654 455666777777777777777777766777888888888888


Q ss_pred             CCChhh
Q 028942          157 PISMDQ  162 (201)
Q Consensus       157 ~l~~~~  162 (201)
                      ++.++.
T Consensus       236 ~~~c~~  241 (285)
T 1ozn_A          236 PWVCDC  241 (285)
T ss_dssp             CEECSG
T ss_pred             CccCCC
Confidence            877654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.8e-20  Score=137.01  Aligned_cols=156  Identities=28%  Similarity=0.436  Sum_probs=138.4

Q ss_pred             CCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l   83 (201)
                      ..++.|++++|.+..++ ..|..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+++ .+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            46889999999999774 468999999999999999997754 47889999999999999998864 5678899999999


Q ss_pred             eCCCCCcCccc-ccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           84 SNNKLKSLPES-IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      ++|.+..++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.++
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999988764 5789999999999999998876 578899999999999999999887789999999999999999987


Q ss_pred             h
Q 028942          162 Q  162 (201)
Q Consensus       162 ~  162 (201)
                      .
T Consensus       195 ~  195 (251)
T 3m19_A          195 R  195 (251)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=1.2e-20  Score=140.30  Aligned_cols=158  Identities=25%  Similarity=0.356  Sum_probs=115.6

Q ss_pred             cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCC-CccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNR-ITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNL   78 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~-l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L   78 (201)
                      |.++++|++|++++|.++.+ +..+..+++|+.|++++|. +..+ +..+..+++|++|++++|.++.+ +..+..+++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            56677777777777777765 5567777777777777775 6665 45566777788888887777766 3456667778


Q ss_pred             CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      ++|++++|.+..++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..+....+..+++|+.|++++|
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            888888887776654 36677788888888887777665 3667778888888888887665555677888888888888


Q ss_pred             CCCh
Q 028942          157 PISM  160 (201)
Q Consensus       157 ~l~~  160 (201)
                      .++.
T Consensus       212 ~l~~  215 (285)
T 1ozn_A          212 NLSA  215 (285)
T ss_dssp             CCSC
T ss_pred             cCCc
Confidence            7764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.2e-20  Score=139.36  Aligned_cols=159  Identities=31%  Similarity=0.406  Sum_probs=127.2

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVL   80 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~   80 (201)
                      .|.++++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             HhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            356777788888888877776554 6678888888888888888777778888888888888888875 45778888999


Q ss_pred             EEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942           81 LNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus        81 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      |++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..+|..+ ..+..|+.+++.+|++
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCB
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCc
Confidence            9999988887765 356788899999999988888764 466888999999999998888774 4456899999999999


Q ss_pred             Chhh
Q 028942          159 SMDQ  162 (201)
Q Consensus       159 ~~~~  162 (201)
                      .|++
T Consensus       208 ~C~c  211 (290)
T 1p9a_G          208 LCNC  211 (290)
T ss_dssp             CCSG
T ss_pred             cCcC
Confidence            8774

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.2e-20  Score=138.45  Aligned_cols=152  Identities=25%  Similarity=0.401  Sum_probs=109.2

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      .+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL  134 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence            35567777777777777777766 777777777777777777664 46667777777777777777654 6677777777


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++.  +..+++|++|++++|.++.
T Consensus       135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence            777777776654 6667777777777777776655 6667777777777777766654  5667777777777777663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.2e-20  Score=138.46  Aligned_cols=151  Identities=30%  Similarity=0.413  Sum_probs=103.3

Q ss_pred             CccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCC
Q 028942            8 NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN   86 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~   86 (201)
                      .++.|++++|.+..+ +..|..+++|+.|++++|.++.++.. ..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence            455555555555544 34456666666666666666655433 4566677777777777766666666777777777777


Q ss_pred             CCCcCc-ccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           87 KLKSLP-ESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        87 ~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      .+..++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++..++..+++|+.|++++|.++
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            777665 3466777777777777777766543 456777778888888777777776777778888888877776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=5.6e-20  Score=135.78  Aligned_cols=154  Identities=31%  Similarity=0.476  Sum_probs=136.0

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l   83 (201)
                      ++++.|++++|.+..++. .|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            468999999999998865 688999999999999999988765 4779999999999999998865 4578899999999


Q ss_pred             eCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           84 SNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++++|.++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            9999998754 568899999999999999988764 6789999999999999999988778899999999999998874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=6.2e-20  Score=135.90  Aligned_cols=161  Identities=30%  Similarity=0.426  Sum_probs=118.1

Q ss_pred             ccccCCCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNL   78 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   78 (201)
                      .|.++++|++|++++|.+..++. .|..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            46677788888888888776644 5777788888888888777654 456677777777777777776643 45666777


Q ss_pred             CEEEeeCCCCCc--CcccccCCCCCceEEcCCCcCCcCC----------------------------hhhhCCCccceEE
Q 028942           79 VLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIGELP----------------------------ASICNLIHLKSLC  128 (201)
Q Consensus        79 ~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~----------------------------~~~~~~~~L~~L~  128 (201)
                      ++|++++|.+..  +|..+..+++|+.|++++|.++.++                            .......+|+.|+
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~  206 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA  206 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence            777777777764  4566666777777777777665442                            2222233688899


Q ss_pred             ccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          129 LNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +++|.++.++..++..+++|+.+++.+|++.|+.
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            9999998888888889999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.2e-21  Score=138.44  Aligned_cols=156  Identities=17%  Similarity=0.283  Sum_probs=83.1

Q ss_pred             cccCCCccEEecCCCc-CcccCc-cccCCCCCcEEeccC-CCCccCch-hhhCcCCCCEEEecCCcCcccchhhhcCCCC
Q 028942            3 ISKLINIQRLVLDDNH-IERLPV-NLGKLQSLKVMTLDG-NRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRNL   78 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~l~l~~-~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L   78 (201)
                      |.++++|+.|++++|. ++.+++ .|..+++|+.+++++ |.++.++. .+..+++|++|++++|.++.+|. +..+.+|
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L  129 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYST  129 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccc
Confidence            4445555555555554 554433 455555555555554 55554432 34455555555555555555544 4444455


Q ss_pred             C---EEEeeCC-CCCcCcc-cccCCCCCc-eEEcCCCcCCcCChhhhCCCccceEEccCCc-CCccChhhhhcC-ccCCe
Q 028942           79 V---LLNVSNN-KLKSLPE-SIGSCYSLE-ELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDC-KALQN  150 (201)
Q Consensus        79 ~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~-~~L~~  150 (201)
                      +   ++++++| .+..++. .+..+++|+ .+++++|.++.++......++|+.|++++|. ++.++...+.++ ++|+.
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence            4   5555555 5555443 345555566 6666666555555432223556666666663 555555555555 56666


Q ss_pred             EecccCCCC
Q 028942          151 ISLHNNPIS  159 (201)
Q Consensus       151 l~l~~n~l~  159 (201)
                      |++++|.++
T Consensus       210 L~l~~N~l~  218 (239)
T 2xwt_C          210 LDVSQTSVT  218 (239)
T ss_dssp             EECTTCCCC
T ss_pred             EECCCCccc
Confidence            666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=9e-20  Score=131.58  Aligned_cols=152  Identities=28%  Similarity=0.415  Sum_probs=136.7

Q ss_pred             ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCC
Q 028942            9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNN   86 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~   86 (201)
                      -+.++.+++.+..+|..+.  ++|+.|++++|.++.+ |..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4568888999999987664  7999999999999977 56688899999999999999998754 578999999999999


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .+..++. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9998865 467899999999999999999998999999999999999999998888899999999999999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=7.5e-20  Score=136.54  Aligned_cols=152  Identities=27%  Similarity=0.411  Sum_probs=91.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|++|++++|.+..+++ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.+ +.+..+++|+.|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY  140 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred             HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence            4455566666666666665554 5556666666666666655432 55566666666666666555 3455566666666


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +++|.+..+ ..+..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++.  +..+++|+.|++.+|++...
T Consensus       141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCC
Confidence            666666655 345556666666666666665554 5556666666666666655543  45666666666666665443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=6.9e-20  Score=131.41  Aligned_cols=151  Identities=26%  Similarity=0.422  Sum_probs=135.4

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK   87 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~   87 (201)
                      +.++.+++.++.+|..+.  ++++.|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+.+|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            568899999999987665  689999999999998865 678899999999999999987 6688999999999999999


Q ss_pred             CCcCccc-ccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942           88 LKSLPES-IGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus        88 ~~~~~~~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +..+|.. +..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++...+..+++|+.+++.+|++.|+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            9998764 578999999999999999874 56888999999999999999998888899999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=2.8e-20  Score=139.65  Aligned_cols=111  Identities=29%  Similarity=0.341  Sum_probs=47.3

Q ss_pred             CcCCCCEEEecCCcCcc--cchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccce
Q 028942           51 QLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKS  126 (201)
Q Consensus        51 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~  126 (201)
                      .+++|++|++++|.+..  +|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            33344444444443332  233334444444444444444433 2233444444444444444444332 2334444555


Q ss_pred             EEccCCcCCccChhhhhcC-ccCCeEecccCCCChh
Q 028942          127 LCLNNNNIGQIPANLLKDC-KALQNISLHNNPISMD  161 (201)
Q Consensus       127 L~l~~~~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~  161 (201)
                      |++++|.+.......+..+ ++|+.|++++|++.++
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            5555554433333223333 2455555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=5.7e-20  Score=129.66  Aligned_cols=152  Identities=19%  Similarity=0.293  Sum_probs=129.9

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEEE
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLN   82 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~   82 (201)
                      ..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..++ .+..++.|++|++++|.++. .+..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            45678999999999999888 6888999999999999877664 67889999999999999986 466788899999999


Q ss_pred             eeCCCCCc-CcccccCCCCCceEEcCCCc-CCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKS-LPESIGSCYSLEELQANDNL-IGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +++|.+.. .+..+..+++|+.|++++|. ++.++ .+..++.|+.|++++|.+..++  .+..+++|+.|++.+|+|..
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            99999985 46678889999999999997 88887 6788999999999999998876  37889999999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.3e-19  Score=133.98  Aligned_cols=158  Identities=25%  Similarity=0.433  Sum_probs=139.1

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLL   81 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L   81 (201)
                      +..+++|+.|++.++.+..++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++. +..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            345788999999999988776 4778999999999999999874 778899999999999999988654 6889999999


Q ss_pred             EeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           82 NVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        82 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            999999998765 468899999999999999988754 578999999999999999998887899999999999999988


Q ss_pred             hhh
Q 028942          160 MDQ  162 (201)
Q Consensus       160 ~~~  162 (201)
                      ...
T Consensus       195 ~~~  197 (272)
T 3rfs_A          195 SVP  197 (272)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.83  E-value=5.6e-20  Score=135.33  Aligned_cols=154  Identities=26%  Similarity=0.288  Sum_probs=134.9

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++....  .+|++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            457789999999999999888 68889999999999999998876 8899999999999999998865333  8999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +++|.+..++ .+..+++|+.|++++|.++.++ .+..++.|+.|++++|.+..+  ..+..+++|+.|++.+|++....
T Consensus       113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9999999875 4788999999999999999886 578899999999999999877  34788999999999999987654


Q ss_pred             hc
Q 028942          163 FQ  164 (201)
Q Consensus       163 ~~  164 (201)
                      ..
T Consensus       189 ~~  190 (263)
T 1xeu_A          189 VK  190 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=9.3e-20  Score=143.35  Aligned_cols=159  Identities=28%  Similarity=0.451  Sum_probs=85.0

Q ss_pred             cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch----------
Q 028942            3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE----------   70 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----------   70 (201)
                      |.++++|+.|++++|.+..++ ..|..+++|+.|++++|.++.++. .+..+++|++|++++|.+..++.          
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            455556666666666555443 345555555555555555555433 24445555555555554443321          


Q ss_pred             ----------------hhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCc------------------------
Q 028942           71 ----------------TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL------------------------  110 (201)
Q Consensus        71 ----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------  110 (201)
                                      .+..+++|++|++++|.+..+|. +..+++|+.|++++|.                        
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence                            23334444444444444444332 3333444444444444                        


Q ss_pred             CCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          111 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       111 i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      ++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|++
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            43332 23445566666777777776666666667777777777777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.4e-19  Score=142.83  Aligned_cols=160  Identities=26%  Similarity=0.394  Sum_probs=87.5

Q ss_pred             cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch----------
Q 028942            3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE----------   70 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~----------   70 (201)
                      |.++++|+.|++++|.+..++ ..|..+++|+.|++++|.++.++.. +..+++|++|++++|.+..++.          
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            455556666666666555442 3455555555555555555554332 4445555555555555443322          


Q ss_pred             ----------------hhhcCCCCCEEEeeCCCCCcC-----------------------cccccCCCCCceEEcCCCcC
Q 028942           71 ----------------TIGSLRNLVLLNVSNNKLKSL-----------------------PESIGSCYSLEELQANDNLI  111 (201)
Q Consensus        71 ----------------~~~~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~n~i  111 (201)
                                      .+..+.+|++|++++|.+..+                       +..+..+++|+.|++++|.+
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence                            123334444444444443333                       22334444555555555554


Q ss_pred             CcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          112 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       112 ~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|++
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            433 234555666777777777777776666677777777777777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=4.5e-20  Score=139.10  Aligned_cols=110  Identities=26%  Similarity=0.444  Sum_probs=60.6

Q ss_pred             cccCCCccEEecCC-CcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCC
Q 028942            3 ISKLINIQRLVLDD-NHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNL   78 (201)
Q Consensus         3 ~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L   78 (201)
                      |.++++|+.|++++ |.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            45555666666653 5544 34555555666666666665555 44555555555666666655555 345555555555


Q ss_pred             CEEEeeCCCCC-cCcccccCCC-CCceEEcCCCcCC
Q 028942           79 VLLNVSNNKLK-SLPESIGSCY-SLEELQANDNLIG  112 (201)
Q Consensus        79 ~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~n~i~  112 (201)
                      ++|++++|.+. .+|..+..++ .|+.|++++|.++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            55555555555 4444444444 5555555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2.3e-19  Score=134.89  Aligned_cols=153  Identities=27%  Similarity=0.427  Sum_probs=138.4

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +.++++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.+++ +..+++|+.|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS  157 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence            678899999999999999876 68889999999999999998864 8899999999999999998866 88899999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +++|.+..++. +..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++.  +..+++|+.|++++|+++...
T Consensus       158 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          158 IGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             ccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            99999998876 8889999999999999998876 7889999999999999988874  788999999999999987543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=3.3e-20  Score=139.25  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch--hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeC
Q 028942            9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSN   85 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~   85 (201)
                      |++|++++|.+..++..+..+++|+.|++++|.+..++.  .+..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            333333333333333334444444444444444443322  334444455555555544433 22344455555555555


Q ss_pred             CCCCc--CcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           86 NKLKS--LPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        86 ~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      |.+..  +|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++|.+...
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            55543  344455556666666666666554 34455566666666666666655554456666666666666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=128.70  Aligned_cols=151  Identities=19%  Similarity=0.293  Sum_probs=133.3

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch--hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNN   86 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~   86 (201)
                      +.++++++.++.+|..+.  ..++.|++++|.++.++.  .+..+++|++|++++|.++.+++ .+..+.+|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            579999999999987664  457899999999997732  37889999999999999998865 6889999999999999


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            9998865 578899999999999999987 566888999999999999999887777899999999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=6.5e-20  Score=138.23  Aligned_cols=157  Identities=22%  Similarity=0.375  Sum_probs=90.9

Q ss_pred             ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCC-C
Q 028942            2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLR-N   77 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~-~   77 (201)
                      +|.++++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+. +
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~  175 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence            3566677777777777776 55666777777777777777766 45666666777777777777766 4566666665 6


Q ss_pred             CCEEEeeCCCCC-cCccccc-----------------------CCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCc
Q 028942           78 LVLLNVSNNKLK-SLPESIG-----------------------SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN  133 (201)
Q Consensus        78 L~~L~l~~~~~~-~~~~~~~-----------------------~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~  133 (201)
                      |++|++++|.+. .+|..+.                       .+++|+.|++++|.++..+..+..+++|+.|++++|.
T Consensus       176 L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             CcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence            666666666655 3344443                       4444444444444444333333444455555555555


Q ss_pred             CC-ccChhhhhcCccCCeEecccCCCC
Q 028942          134 IG-QIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       134 l~-~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +. .+|. .+..+++|+.|++++|.++
T Consensus       256 l~~~~p~-~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          256 IYGTLPQ-GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred             ccCcCCh-HHhcCcCCCEEECcCCccc
Confidence            53 2332 2445555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.6e-19  Score=142.53  Aligned_cols=86  Identities=29%  Similarity=0.344  Sum_probs=68.3

Q ss_pred             hCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccce
Q 028942           50 GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKS  126 (201)
Q Consensus        50 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~  126 (201)
                      ..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            3444556666666666655 45678888999999999999876 4567889999999999999998875 4677899999


Q ss_pred             EEccCCcCC
Q 028942          127 LCLNNNNIG  135 (201)
Q Consensus       127 L~l~~~~l~  135 (201)
                      |++++|++.
T Consensus       295 L~L~~Np~~  303 (452)
T 3zyi_A          295 LHLHHNPWN  303 (452)
T ss_dssp             EECCSSCEE
T ss_pred             EEccCCCcC
Confidence            999999873

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=1.9e-19  Score=141.63  Aligned_cols=84  Identities=25%  Similarity=0.405  Sum_probs=61.7

Q ss_pred             CcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceE
Q 028942           51 QLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSL  127 (201)
Q Consensus        51 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L  127 (201)
                      .+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence            334455555555555544 34556667777777777777755 3456788999999999999998875 46778999999


Q ss_pred             EccCCcC
Q 028942          128 CLNNNNI  134 (201)
Q Consensus       128 ~l~~~~l  134 (201)
                      ++++|++
T Consensus       285 ~L~~Np~  291 (440)
T 3zyj_A          285 HLHHNPW  291 (440)
T ss_dssp             ECCSSCE
T ss_pred             EcCCCCc
Confidence            9999988

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=4.3e-19  Score=132.40  Aligned_cols=151  Identities=25%  Similarity=0.380  Sum_probs=135.8

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            3467889999999999998864 8889999999999999998876 8899999999999999998754 88899999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++.  +..+++|+.|++++|.++.
T Consensus       119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            9999999874 577899999999999999988 567889999999999999988876  7899999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=6.1e-19  Score=143.37  Aligned_cols=156  Identities=27%  Similarity=0.400  Sum_probs=109.8

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      ++..|++|+.|++++|.+..+++ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+ +.+..+++|+.|
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL  136 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEE
T ss_pred             HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEE
Confidence            35566777777777777776655 666777777777777777654 566677777777777777766 346667777777


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      ++++|.+..+ ..+..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++.  +..+++|+.|++.+|++...
T Consensus       137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEEECC
T ss_pred             ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEEccCCcCcCC
Confidence            7777777766 446677777777777777776655 6677777777777777766643  56777777777777776654


Q ss_pred             hhc
Q 028942          162 QFQ  164 (201)
Q Consensus       162 ~~~  164 (201)
                      ...
T Consensus       213 p~~  215 (605)
T 1m9s_A          213 PIN  215 (605)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=6.3e-19  Score=141.20  Aligned_cols=157  Identities=24%  Similarity=0.357  Sum_probs=138.1

Q ss_pred             ccCCCccEEecCCCcCcc-cCccccCCCCCcEEeccCCCCccC---chhhhCcCCCCEEEecCCcCcc-cchh-hhcCCC
Q 028942            4 SKLINIQRLVLDDNHIER-LPVNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLSILGNMLTC-LPET-IGSLRN   77 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~   77 (201)
                      ..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++.+   |..+..+++|++|++++|.+.. +|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            578899999999999986 688889999999999999999854   5668889999999999999997 7764 677889


Q ss_pred             CCEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           78 LVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        78 L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      |++|++++|.+. .++..+.  ++|+.|++++|.++.+|..+..++.|+.|++++|.++.+|...+..+++|+.+++.+|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            999999999986 3444332  7899999999999999988889999999999999999999877889999999999999


Q ss_pred             CCChhh
Q 028942          157 PISMDQ  162 (201)
Q Consensus       157 ~l~~~~  162 (201)
                      +++|++
T Consensus       479 ~~~c~c  484 (520)
T 2z7x_B          479 PWDCSC  484 (520)
T ss_dssp             CBCCCH
T ss_pred             CCcccC
Confidence            999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=8.3e-19  Score=128.15  Aligned_cols=153  Identities=25%  Similarity=0.362  Sum_probs=135.0

Q ss_pred             CCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEee
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVS   84 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~   84 (201)
                      ...+.++++++.++.+|..+.  +.++.|++++|.+..++ ..+..+++|++|++++|.++.+++ .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356789999999999988765  68999999999999774 458889999999999999998755 47889999999999


Q ss_pred             CCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           85 NNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        85 ~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +|.+..++. .+..+++|+.|++++|.++.++.. +..++.|+.|++++|.+..++...+..+++|+.|++++|.++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            999998864 568899999999999999988764 57899999999999999999987789999999999999998743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=8e-19  Score=133.06  Aligned_cols=156  Identities=26%  Similarity=0.416  Sum_probs=88.7

Q ss_pred             ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLV   79 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~   79 (201)
                      .|.++++|++|++++|.+..+ |..+..+++|+.|++++|.++.+|..+.  +.|++|++++|.+..+++ .+..+++|+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            356677777777777777765 5566777777777777776665543321  344455555444444432 234444555


Q ss_pred             EEEeeCCCCCc---CcccccCC---------------------CCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcC
Q 028942           80 LLNVSNNKLKS---LPESIGSC---------------------YSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        80 ~L~l~~~~~~~---~~~~~~~~---------------------~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l  134 (201)
                      +|++++|.+..   .+..+..+                     ++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            55555554431   12233333                     4455555555555544 34455666677777777766


Q ss_pred             CccChhhhhcCccCCeEecccCCCC
Q 028942          135 GQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       135 ~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ..++...+..+++|+.|++++|.++
T Consensus       229 ~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          229 SAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ceeChhhccCCCCCCEEECCCCcCc
Confidence            6665545666667777777777665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=3.6e-18  Score=130.23  Aligned_cols=153  Identities=24%  Similarity=0.404  Sum_probs=77.3

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.+..++. +..+++|+.+++++|.+..++. +..++.|+.+++++|.+..++. +..+++|++|+
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~  227 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLK  227 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence            4455666666666666655544 5555666666666666555433 3444445555555544444332 34444444444


Q ss_pred             eeCCCCCcCcc---------------------cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhh
Q 028942           83 VSNNKLKSLPE---------------------SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL  141 (201)
Q Consensus        83 l~~~~~~~~~~---------------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  141 (201)
                      +++|.+..++.                     .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+...+...
T Consensus       228 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          228 IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             ccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhH
Confidence            44444444433                     2344445555555555544442 2344455555555555554444444


Q ss_pred             hhcCccCCeEecccCCCC
Q 028942          142 LKDCKALQNISLHNNPIS  159 (201)
Q Consensus       142 ~~~~~~L~~l~l~~n~l~  159 (201)
                      +..+++|+.|++++|+++
T Consensus       307 l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             HHTCTTCSEEECCSSSCC
T ss_pred             hhccccCCEEEccCCccc
Confidence            455555555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.8e-19  Score=136.84  Aligned_cols=158  Identities=22%  Similarity=0.331  Sum_probs=86.6

Q ss_pred             cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch--hhhcCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE--TIGSLRNL   78 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L   78 (201)
                      |.++++|+.|++++|.++.+ +..|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+|.  .+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            44555555555555555544 23455555555555555555555443 4455555555555555555543  34455555


Q ss_pred             CEEEeeCC-CCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           79 VLLNVSNN-KLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        79 ~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      ++|++++| .+..+ +..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence            55555555 24433 23445555555555555555543 34455556666666666666555555555566677777776


Q ss_pred             CCCCh
Q 028942          156 NPISM  160 (201)
Q Consensus       156 n~l~~  160 (201)
                      |.++.
T Consensus       232 n~l~~  236 (353)
T 2z80_A          232 TDLDT  236 (353)
T ss_dssp             CBCTT
T ss_pred             Ccccc
Confidence            66654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=6.6e-19  Score=135.19  Aligned_cols=156  Identities=25%  Similarity=0.357  Sum_probs=133.0

Q ss_pred             CCccEEecCCCcCcccCcc-cc-CCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEE
Q 028942            7 INIQRLVLDDNHIERLPVN-LG-KLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLN   82 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~-~~-~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~   82 (201)
                      ..++.|++++|.++.++.. +. .+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+++ .+..+.+|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578899999999987554 55 8999999999999999875 458889999999999999998865 578889999999


Q ss_pred             eeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChhh----hCCCccceEEccCCcCCccChhhhhcCcc--CCeEeccc
Q 028942           83 VSNNKLKSL-PESIGSCYSLEELQANDNLIGELPASI----CNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHN  155 (201)
Q Consensus        83 l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--L~~l~l~~  155 (201)
                      +++|.+..+ +..+..+++|+.|++++|.++.++...    ..+++|+.|++++|.+..++...+..++.  ++.|++.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            999999877 457888999999999999999988754    56889999999999999999877788876  48899999


Q ss_pred             CCCChhh
Q 028942          156 NPISMDQ  162 (201)
Q Consensus       156 n~l~~~~  162 (201)
                      |++.|++
T Consensus       199 N~~~C~C  205 (361)
T 2xot_A          199 NPLECDC  205 (361)
T ss_dssp             SCEECCH
T ss_pred             CCccCCc
Confidence            9999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=1.5e-18  Score=128.47  Aligned_cols=153  Identities=28%  Similarity=0.391  Sum_probs=126.5

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l   83 (201)
                      +++++|++++|.++.++. .|..+++|+.+++++|.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            359999999999998865 78999999999999999997754 6788999999999999999875 56788999999999


Q ss_pred             eCCCCCcCcc-cccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccCC----eEecccC
Q 028942           84 SNNKLKSLPE-SIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ----NISLHNN  156 (201)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~l~l~~n  156 (201)
                      .+|.+..++. .+..+++|+.|++++|.++.  +|..+..+++|+.|++++|.+..++...+..+..|+    .+++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            9999987755 67889999999999999986  678889999999999999999777654444444333    4455555


Q ss_pred             CCC
Q 028942          157 PIS  159 (201)
Q Consensus       157 ~l~  159 (201)
                      .+.
T Consensus       188 ~l~  190 (276)
T 2z62_A          188 PMN  190 (276)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=1.4e-18  Score=134.54  Aligned_cols=84  Identities=29%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLV   79 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~   79 (201)
                      |.++++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+++ .+..+++|+
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            444555555555555555442 2344455555555555555544433 2344444444444444443322 233333444


Q ss_pred             EEEeeCC
Q 028942           80 LLNVSNN   86 (201)
Q Consensus        80 ~L~l~~~   86 (201)
                      +|++++|
T Consensus       169 ~L~l~~n  175 (390)
T 3o6n_A          169 NLQLSSN  175 (390)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            4444333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=5.5e-19  Score=148.49  Aligned_cols=156  Identities=22%  Similarity=0.322  Sum_probs=107.9

Q ss_pred             ccccCCCccEEecCCCcCcc------------------cCcccc--CCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEe
Q 028942            2 EISKLINIQRLVLDDNHIER------------------LPVNLG--KLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSI   60 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l   60 (201)
                      +|.++++|+.|++++|.+..                  +|..+.  .+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            35677777777777777776                  777765  7777777777777644 56767777777777777


Q ss_pred             cCCc-Ccc--cchhhhcCC-------CCCEEEeeCCCCCcCcc--cccCCCCCceEEcCCCcCCcCChhhhCCCccceEE
Q 028942           61 LGNM-LTC--LPETIGSLR-------NLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPASICNLIHLKSLC  128 (201)
Q Consensus        61 ~~~~-~~~--~~~~~~~~~-------~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~  128 (201)
                      ++|+ ++.  +|..+..+.       +|+.|++++|.+..+|.  .+..+++|+.|++++|.++.+| .+..+++|+.|+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence            7776 664  565555444       77777777777777766  6677777777777777777666 566666777777


Q ss_pred             ccCCcCCccChhhhhcCcc-CCeEecccCCCC
Q 028942          129 LNNNNIGQIPANLLKDCKA-LQNISLHNNPIS  159 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~-L~~l~l~~n~l~  159 (201)
                      +++|.+..+|.. +..+++ |+.|++++|.++
T Consensus       602 Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          602 LDYNQIEEIPED-FCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CCSSCCSCCCTT-SCEECTTCCEEECCSSCCC
T ss_pred             CcCCccccchHH-HhhccccCCEEECcCCCCC
Confidence            777777666554 455555 666666666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=1.8e-18  Score=131.10  Aligned_cols=153  Identities=24%  Similarity=0.378  Sum_probs=72.5

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCc---cCchhhhCcCCCCEEEecCCcCcccch------------
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPE------------   70 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~---~~~~~~~~l~~L~~L~l~~~~~~~~~~------------   70 (201)
                      ++|++|++++|.+..++. .+..+++|+.+++++|.+.   ..+..+..+++|++|++++|.++.+|.            
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~  200 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD  200 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECC
Confidence            345555555555554433 2444555555555555543   123334444455555555554444433            


Q ss_pred             ----------hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccCh
Q 028942           71 ----------TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA  139 (201)
Q Consensus        71 ----------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~  139 (201)
                                .+..+++|++|++++|.+..++. .+..+++|+.|++++|.++.+|..+..++.|+.|++++|.++.++.
T Consensus       201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence                      34444455555555555443322 3444455555555555555554444445555555555555544443


Q ss_pred             hhhhc------CccCCeEecccCCCC
Q 028942          140 NLLKD------CKALQNISLHNNPIS  159 (201)
Q Consensus       140 ~~~~~------~~~L~~l~l~~n~l~  159 (201)
                      ..+..      ...++.+++.+|++.
T Consensus       281 ~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          281 NDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             hhcCCcccccccccccceEeecCccc
Confidence            33321      134445555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=2.2e-18  Score=133.52  Aligned_cols=164  Identities=21%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             cccCCCccEEecCCCcCcccCcc-ccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccc-----------
Q 028942            3 ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-----------   69 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~-----------   69 (201)
                      |.++++|++|++++|.+..+|.. |..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.++           
T Consensus       113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~  192 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  192 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred             hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceee
Confidence            45556666666666666655544 355566666666666555442 23444555555555555443211           


Q ss_pred             -------------------------------------------------hhhhcCCCCCEEEeeCCCCCcC-cccccCCC
Q 028942           70 -------------------------------------------------ETIGSLRNLVLLNVSNNKLKSL-PESIGSCY   99 (201)
Q Consensus        70 -------------------------------------------------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~   99 (201)
                                                                       +.+..+++|++|++++|.+..+ |..+..++
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                                                             1234456667777777766654 44556666


Q ss_pred             CCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhcccc
Q 028942          100 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQME  167 (201)
Q Consensus       100 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~  167 (201)
                      +|+.|++++|.++.++..+..+++|+.|++++|.+..++.. +..+++|+.|++.+|.+....+..++
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~  339 (390)
T 3o6n_A          273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHH  339 (390)
T ss_dssp             SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTC
T ss_pred             cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhc
Confidence            67777777776666655555566666666666666655544 34455666666666655544333333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-17  Score=118.75  Aligned_cols=162  Identities=28%  Similarity=0.433  Sum_probs=137.2

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNK   87 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~   87 (201)
                      +.++.+++.++.+|..+  .++++.+++++|.++.++.. +..+++|++|++++|.++.+++. +..+.+|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56788888888888665  35899999999999988654 67899999999999999988664 5788999999999999


Q ss_pred             CCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhcc
Q 028942           88 LKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ  165 (201)
Q Consensus        88 ~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  165 (201)
                      +..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|++.+..   
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---  164 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---  164 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence            998865 467899999999999999988764 678899999999999999998887899999999999999987643   


Q ss_pred             ccChhHHHHHHh
Q 028942          166 MEGFEEFEARRR  177 (201)
Q Consensus       166 l~~~~~l~~~~~  177 (201)
                       +.+..|....+
T Consensus       165 -~~l~~L~~~~n  175 (208)
T 2o6s_A          165 -PGIRYLSEWIN  175 (208)
T ss_dssp             -TTTHHHHHHHH
T ss_pred             -CCHHHHHHHHH
Confidence             35566665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=3e-19  Score=129.53  Aligned_cols=152  Identities=21%  Similarity=0.363  Sum_probs=133.4

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCC-CccCch-hhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEE
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNR-ITSLPD-ELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLL   81 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~-l~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L   81 (201)
                      .+++.|++++|.++.++. .|..+++|+.+++++|. ++.++. .+..+++|++|++++ |.++.+++ .+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378999999999998866 78899999999999997 888765 678899999999998 99998864 56788999999


Q ss_pred             EeeCCCCCcCcccccCCCCCc---eEEcCCC-cCCcCCh-hhhCCCccc-eEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           82 NVSNNKLKSLPESIGSCYSLE---ELQANDN-LIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~-~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      ++++|.+..+|. +..+++|+   .+++++| .++.++. .+..++.|+ .|++++|.+..++..++.. ++|+.|++.+
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            999999998887 77888888   9999999 9998875 478899999 9999999999998877776 7899999999


Q ss_pred             CC-CCh
Q 028942          156 NP-ISM  160 (201)
Q Consensus       156 n~-l~~  160 (201)
                      |+ ++.
T Consensus       189 n~~l~~  194 (239)
T 2xwt_C          189 NKYLTV  194 (239)
T ss_dssp             CTTCCE
T ss_pred             CCCccc
Confidence            95 764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=3.1e-19  Score=146.31  Aligned_cols=156  Identities=22%  Similarity=0.349  Sum_probs=103.1

Q ss_pred             ccccCCCccEEecCCCcCcc------------------cCcccc--CCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEe
Q 028942            2 EISKLINIQRLVLDDNHIER------------------LPVNLG--KLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSI   60 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l   60 (201)
                      +|.++++|+.|++++|.+..                  +|..+.  .+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            35667777777777777776                  777766  7777777777777655 55666777777777777


Q ss_pred             cCCc-Ccc--cchhhhcC------CCCCEEEeeCCCCCcCcc--cccCCCCCceEEcCCCcCC-cCChhhhCCCccceEE
Q 028942           61 LGNM-LTC--LPETIGSL------RNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLC  128 (201)
Q Consensus        61 ~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~  128 (201)
                      ++|. ++.  +|..+..+      ++|++|++++|.+..+|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            7776 664  56655554      677777777777776666  6667777777777777666 565 555555666666


Q ss_pred             ccCCcCCccChhhhhcCcc-CCeEecccCCCC
Q 028942          129 LNNNNIGQIPANLLKDCKA-LQNISLHNNPIS  159 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~-L~~l~l~~n~l~  159 (201)
                      +++|.+..+|.. +..+++ |+.|++++|.++
T Consensus       360 L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          360 LAYNQITEIPAN-FCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CCSSEEEECCTT-SEEECTTCCEEECCSSCCS
T ss_pred             CCCCccccccHh-hhhhcccCcEEEccCCcCc
Confidence            666665555544 344555 555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=2.1e-18  Score=130.16  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=121.1

Q ss_pred             CCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccc-hhh-hcCCCCCEEEeeCCCCCcCcccccCCCCCceEE
Q 028942           29 LQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ  105 (201)
Q Consensus        29 l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  105 (201)
                      +++|+.+++++|.++.++. .+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.+..++.. ..+++|+.|+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEE
Confidence            5678888888888887644 5677899999999999998863 444 4678999999999999887543 3589999999


Q ss_pred             cCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhh----ccccChhHHHHHHhhccc
Q 028942          106 ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF----QQMEGFEEFEARRRKKFD  181 (201)
Q Consensus       106 l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~l~~~~~l~~~~~~~~~  181 (201)
                      +++|.++.++..+..+++|+.|++++|.+..++.. +..+++|+.+++++|++.+...    ..+..+..+.......+.
T Consensus       198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            99999999988888999999999999999988876 6888999999999999995433    233444555555444444


Q ss_pred             c
Q 028942          182 K  182 (201)
Q Consensus       182 ~  182 (201)
                      +
T Consensus       277 ~  277 (317)
T 3o53_A          277 G  277 (317)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=2.3e-18  Score=138.69  Aligned_cols=158  Identities=23%  Similarity=0.292  Sum_probs=110.9

Q ss_pred             cCCCccEEecCCCcCcc-cC---ccccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcccchhhhcCCC
Q 028942            5 KLINIQRLVLDDNHIER-LP---VNLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLRN   77 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~-l~---~~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   77 (201)
                      ++++|+.|++++|.+.. +|   ..+..+++|+.|++++|.++.++   ..+..+++|++|++++|.++.+|..+..+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            46666677777666653 22   22455666666666666666553   2355566666666666666666655555556


Q ss_pred             CCEEEeeCCCCCcCccc------------------ccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccCh
Q 028942           78 LVLLNVSNNKLKSLPES------------------IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA  139 (201)
Q Consensus        78 L~~L~l~~~~~~~~~~~------------------~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~  139 (201)
                      |++|++++|.+..++..                  ...+++|+.|++++|.++.+|. ...++.|+.|++++|.+..++.
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCH
Confidence            66666666655443321                  1357889999999999998886 4568899999999999988888


Q ss_pred             hhhhcCccCCeEecccCCCChhhh
Q 028942          140 NLLKDCKALQNISLHNNPISMDQF  163 (201)
Q Consensus       140 ~~~~~~~~L~~l~l~~n~l~~~~~  163 (201)
                      ..+..+++|+.+++++|++.|+..
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          491 GIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhcCcccCEEEecCCCccCCCc
Confidence            778899999999999999987753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=2.9e-18  Score=143.34  Aligned_cols=83  Identities=28%  Similarity=0.535  Sum_probs=37.6

Q ss_pred             cCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCCCEE
Q 028942            5 KLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLL   81 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L   81 (201)
                      .+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|
T Consensus       464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence            3444444444444444 23444444444444444444444 33444444444444444444444 234444444444444


Q ss_pred             EeeCCC
Q 028942           82 NVSNNK   87 (201)
Q Consensus        82 ~l~~~~   87 (201)
                      ++++|.
T Consensus       544 ~Ls~N~  549 (768)
T 3rgz_A          544 DLNTNL  549 (768)
T ss_dssp             ECCSSE
T ss_pred             ECCCCc
Confidence            444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=8.5e-19  Score=131.89  Aligned_cols=150  Identities=17%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCcc---Cchh--hhCcCCCCEEEecCCcCcccchh----hhcC
Q 028942            6 LINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITS---LPDE--LGQLVRLERLSILGNMLTCLPET----IGSL   75 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~---~~~~--~~~l~~L~~L~l~~~~~~~~~~~----~~~~   75 (201)
                      +++|++|++++|.+..++ ..+..+++|+.|++++|.+..   ++..  +..+++|++|++++|.++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            444555555555444332 334445555555555554331   1111  13344455555555555433221    2344


Q ss_pred             CCCCEEEeeCCCCCcC-cccccCC---CCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942           76 RNLVLLNVSNNKLKSL-PESIGSC---YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        76 ~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      ++|++|++++|.+... |..+..+   ++|+.|++++|.++.+|..+.  ++|+.|++++|.+..++.  +..+++|+.|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  299 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNL  299 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence            5555555555555443 3333333   355555555555555544332  455555555555544432  3444555555


Q ss_pred             ecccCCCC
Q 028942          152 SLHNNPIS  159 (201)
Q Consensus       152 ~l~~n~l~  159 (201)
                      ++++|+++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            55555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=6.9e-18  Score=128.63  Aligned_cols=151  Identities=24%  Similarity=0.351  Sum_probs=124.1

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +.++++|+.|++++|......+.+..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.++
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  205 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT  205 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceee
Confidence            678899999999999666555558899999999999999998765 7889999999999999998866 78899999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +.+|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++.  +..+++|+.|++++|.++
T Consensus       206 l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          206 AYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh--HhcCCCcCEEEccCCccC
Confidence            99999987755 7788899999999998887765 6677777777777777766532  566667777777766665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=2.7e-18  Score=138.88  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=137.6

Q ss_pred             ccCCCccEEecCCCcCcc-cCccccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcc-cchh-hhcCCC
Q 028942            4 SKLINIQRLVLDDNHIER-LPVNLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTC-LPET-IGSLRN   77 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~   77 (201)
                      ..+++|++|++++|.+.. +|..+..+++|+.+++++|.++.++   ..+..+++|++|++++|.+.. +|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            578899999999999986 6888999999999999999999654   457889999999999999987 7654 677899


Q ss_pred             CCEEEeeCCCCCc-CcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           78 LVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        78 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      |++|++++|.+.. ++..+.  ++|+.|++++|.++.+|..+..++.|+.|++++|.+..+|...+..+++|+.+++.+|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            9999999999863 333332  6899999999999999988789999999999999999999877889999999999999


Q ss_pred             CCChhhh
Q 028942          157 PISMDQF  163 (201)
Q Consensus       157 ~l~~~~~  163 (201)
                      ++.|++.
T Consensus       508 ~~~c~c~  514 (562)
T 3a79_B          508 PWDCTCP  514 (562)
T ss_dssp             CBCCCHH
T ss_pred             CcCCCcc
Confidence            9998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.78  E-value=7.9e-19  Score=141.92  Aligned_cols=160  Identities=20%  Similarity=0.274  Sum_probs=128.8

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc--hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP--DELGQLVRLERLSILGNMLTCL-PETIGSLRNLV   79 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~   79 (201)
                      +.++++|++|++++|.+..++..+..+++|+.+++++|.+...+  ..+..+++|++|++++|.+... +..+..+++|+
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            34566777777777777766666777778888888877776553  2466788888888888887764 55677788999


Q ss_pred             EEEeeCCCCC--cCcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           80 LLNVSNNKLK--SLPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        80 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      +|++++|.+.  .+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..++...+..+++|+.+++.+|
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            9999999886  4677888899999999999999876 667888999999999999998888877889999999999999


Q ss_pred             CCChhh
Q 028942          157 PISMDQ  162 (201)
Q Consensus       157 ~l~~~~  162 (201)
                      ++.++.
T Consensus       529 ~~~~~~  534 (570)
T 2z63_A          529 PWDCSC  534 (570)
T ss_dssp             CBCCCT
T ss_pred             cccCCC
Confidence            998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=3.5e-18  Score=142.81  Aligned_cols=159  Identities=28%  Similarity=0.467  Sum_probs=139.3

Q ss_pred             ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhh------
Q 028942            2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETI------   72 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~------   72 (201)
                      .+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|..+      
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  564 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK  564 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence            4678999999999999998 67889999999999999999998 67889999999999999999876 344332      


Q ss_pred             ----------------------------------------------------------------hcCCCCCEEEeeCCCC
Q 028942           73 ----------------------------------------------------------------GSLRNLVLLNVSNNKL   88 (201)
Q Consensus        73 ----------------------------------------------------------------~~~~~L~~L~l~~~~~   88 (201)
                                                                                      ..+.+|++|++++|.+
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence                                                                            2246789999999999


Q ss_pred             C-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCC-ccChhhhhcCccCCeEecccCCCChh
Q 028942           89 K-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        89 ~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      . .+|..+..++.|+.|++++|.++ .+|..++.++.|+.|++++|.+. .+|. .+..++.|+.|++++|+++..
T Consensus       645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSSEEEEE
T ss_pred             cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCCccccc
Confidence            8 67889999999999999999998 88999999999999999999995 5555 478999999999999998754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=1.7e-18  Score=141.00  Aligned_cols=159  Identities=19%  Similarity=0.216  Sum_probs=113.0

Q ss_pred             cccCCCccEEecCCCcCcccC--ccccCCCCCcEEeccCCCCcc-CchhhhCcCCCCEEEecCCcCcc--cchhhhcCCC
Q 028942            3 ISKLINIQRLVLDDNHIERLP--VNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC--LPETIGSLRN   77 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~   77 (201)
                      |.++++|+.|++++|.+..++  ..+..+++|+.+++++|.+.. .|..+..+++|++|++++|.+..  +|..+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            455666666666666666543  356667777777777777664 34556677777777777777765  4566677778


Q ss_pred             CCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCc-cCCeEecc
Q 028942           78 LVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLH  154 (201)
Q Consensus        78 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~l~l~  154 (201)
                      |++|++++|.+..+ |..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+|.. +..++ +|+.+++.
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLT  553 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEcc
Confidence            88888888877755 44567778888888888887765 56677778888888888888777766 55665 58888888


Q ss_pred             cCCCChhh
Q 028942          155 NNPISMDQ  162 (201)
Q Consensus       155 ~n~l~~~~  162 (201)
                      +|++.|+.
T Consensus       554 ~N~~~c~c  561 (606)
T 3vq2_A          554 NNSVACIC  561 (606)
T ss_dssp             SCCCCCSS
T ss_pred             CCCcccCC
Confidence            88887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=1.2e-18  Score=132.32  Aligned_cols=155  Identities=25%  Similarity=0.392  Sum_probs=95.8

Q ss_pred             cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCE
Q 028942            3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVL   80 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~   80 (201)
                      |.++++|++|++++|.+..+ |..+..+++|+.|++++|.++.+|..+.  ++|++|++++|.+..+++ .+..+++|++
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            55566666666666666654 4456666666666666666665554432  556666666666665543 3556667777


Q ss_pred             EEeeCCCCCc--C-cccccCC--------------------CCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCc
Q 028942           81 LNVSNNKLKS--L-PESIGSC--------------------YSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        81 L~l~~~~~~~--~-~~~~~~~--------------------~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~  136 (201)
                      |++++|.+..  + +..+..+                    ++|+.|++++|.++.++ ..+..+++|+.|++++|.+..
T Consensus       152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            7777666542  1 2222222                    34555555555555444 345667778888888888877


Q ss_pred             cChhhhhcCccCCeEecccCCCC
Q 028942          137 IPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       137 ~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ++...+..+++|+.|++++|.++
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CChhHhhCCCCCCEEECCCCcCe
Confidence            77666777888888888888776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=1.4e-18  Score=130.84  Aligned_cols=155  Identities=18%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             ccCCCccEEecCCCcCcccCccccCC-----CCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcc---cchhh--
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKL-----QSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTC---LPETI--   72 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l-----~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~---~~~~~--   72 (201)
                      .++++|++|++++|.+..+|..+..+     ++|+.|++++|.+..++ ..+..+++|++|++++|.+..   ++..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            67788888888888888776666665     78888888888887664 566777888888888887653   23333  


Q ss_pred             hcCCCCCEEEeeCCCCCcCc---c-cccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcCc
Q 028942           73 GSLRNLVLLNVSNNKLKSLP---E-SIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDCK  146 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~---~-~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  146 (201)
                      ..+++|++|++++|.+..++   . .+..+++|+.|++++|.++..+  ..+..+++|+.|++++|.++.+|..+.   +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence            56777888888888777432   2 2345677888888887777543  234446677788888777777766533   6


Q ss_pred             cCCeEecccCCCChh
Q 028942          147 ALQNISLHNNPISMD  161 (201)
Q Consensus       147 ~L~~l~l~~n~l~~~  161 (201)
                      +|+.|++++|.++..
T Consensus       275 ~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN  289 (312)
T ss_dssp             EEEEEECCSSCCCSC
T ss_pred             CceEEECCCCCCCCC
Confidence            777777777777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=3e-18  Score=139.30  Aligned_cols=151  Identities=25%  Similarity=0.389  Sum_probs=136.0

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+..|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..++.|+.|++++|.+..++ .+..+++|+.|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence            346788999999999999887 58889999999999999998866 889999999999999999875 678899999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++.  +..+++|+.|++++|.|+.
T Consensus       116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            9999999874 478899999999999999988 568899999999999999988766  7899999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=3.9e-18  Score=134.46  Aligned_cols=134  Identities=28%  Similarity=0.372  Sum_probs=119.0

Q ss_pred             CCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEc
Q 028942           30 QSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQA  106 (201)
Q Consensus        30 ~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l  106 (201)
                      ++|+.+++++|.+..+ |..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            5789999999988855 56688899999999999999987 45788899999999999999877 557788999999999


Q ss_pred             CCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhh
Q 028942          107 NDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF  163 (201)
Q Consensus       107 ~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  163 (201)
                      ++|.++.+ +..+..+++|++|++++|.++.++..++..+++|+.|++++|+++++..
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999977 5678889999999999999999998888999999999999999998753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.78  E-value=1.1e-18  Score=142.94  Aligned_cols=153  Identities=25%  Similarity=0.381  Sum_probs=92.5

Q ss_pred             CCCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcccchhhhcCCC-CCEE
Q 028942            6 LINIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRN-LVLL   81 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L   81 (201)
                      +++|+.|++++|.++.+|.  .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |++|
T Consensus       304 l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             GGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred             CCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence            4666666666666666666  6666666666666666666 565 555666666666666666666666666666 7777


Q ss_pred             EeeCCCCCcCcccccCCC--CCceEEcCCCcCCc-CChhhh-------CCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942           82 NVSNNKLKSLPESIGSCY--SLEELQANDNLIGE-LPASIC-------NLIHLKSLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~-~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      ++++|.+..+|..+....  +|+.|++++|.++. +|..+.       .+++|+.|++++|.+..++..++..+++|+.|
T Consensus       383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred             EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence            777776666655444332  55566665555542 222233       34456666666666666665555556666666


Q ss_pred             ecccCCCC
Q 028942          152 SLHNNPIS  159 (201)
Q Consensus       152 ~l~~n~l~  159 (201)
                      ++++|.++
T Consensus       463 ~Ls~N~l~  470 (636)
T 4eco_A          463 NLMGNMLT  470 (636)
T ss_dssp             ECCSSCCS
T ss_pred             ECCCCCCC
Confidence            66666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=7.6e-19  Score=143.10  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc--hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEE
Q 028942            5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP--DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLL   81 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L   81 (201)
                      ++++|+.|++++|.+..+|..+..+++|+.+++++|.+...+  ..+..+++|++|++++|.+... |..+..+++|++|
T Consensus       374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            445555555555555555555555566666666666555442  2455566666666666666553 4455666667777


Q ss_pred             EeeCCCCCc--CcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942           82 NVSNNKLKS--LPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus        82 ~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      ++++|.+..  +|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..+....+..+++|+.|++++|.+
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            777766653  455566677777777777777654 34466677777777777777666555566777777777777777


Q ss_pred             C
Q 028942          159 S  159 (201)
Q Consensus       159 ~  159 (201)
                      +
T Consensus       534 ~  534 (606)
T 3vq2_A          534 E  534 (606)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=2.9e-18  Score=139.68  Aligned_cols=64  Identities=25%  Similarity=0.238  Sum_probs=30.4

Q ss_pred             ccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           95 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        95 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +..+++|+.|++++|.++.++..+..+++|+.|++++|.+..+|.. +..+++|+.|++.+|.+.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCC
T ss_pred             hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCC
Confidence            3444444444444444444443333445555555555555544443 234445555555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=3.6e-18  Score=139.06  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=93.3

Q ss_pred             hCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEE
Q 028942           50 GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC  128 (201)
Q Consensus        50 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~  128 (201)
                      ..++.|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..+..++.|+.|+
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY  330 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence            3455666666666666655 556778888999999999888887777789999999999999999998888899999999


Q ss_pred             ccCCcCCccChhhhhcCccCCeEecccCCCChhhhc
Q 028942          129 LNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ  164 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  164 (201)
                      +++|.+..++   +..+++|+.|++++|++.|+...
T Consensus       331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence            9999998876   46788999999999999876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=131.51  Aligned_cols=154  Identities=22%  Similarity=0.338  Sum_probs=132.5

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l   83 (201)
                      ++|++|++++|.++.++. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            478999999999998866 788999999999999999877 45688899999999999999988766 788899999999


Q ss_pred             eCCCCCcCcc--cccCCCCCceEEcCCC-cCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           84 SNNKLKSLPE--SIGSCYSLEELQANDN-LIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        84 ~~~~~~~~~~--~~~~~~~L~~L~l~~n-~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ++|.+..++.  .+..+++|+.|++++| .++.++ ..+..++.|+.|++++|.+..+....+..+++|++|++.+|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999998876  6788999999999998 577664 46788899999999999998776666788999999999999876


Q ss_pred             h
Q 028942          160 M  160 (201)
Q Consensus       160 ~  160 (201)
                      .
T Consensus       212 ~  212 (353)
T 2z80_A          212 L  212 (353)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=3.6e-18  Score=135.47  Aligned_cols=154  Identities=25%  Similarity=0.378  Sum_probs=101.8

Q ss_pred             CCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l   83 (201)
                      ..++.|++++|.+..+ +..|..+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            3566777777777765 44566777777777777776655 55566677777777777777766543 456677777777


Q ss_pred             eCCCCCcC-cccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           84 SNNKLKSL-PESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++|.+..+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++.+|.+..
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            77766654 345566677777777777666543 345666677777777777766666666666777777776666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=6e-18  Score=116.24  Aligned_cols=129  Identities=20%  Similarity=0.236  Sum_probs=75.6

Q ss_pred             CCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCc-CcccccCCCCCceEEc
Q 028942           30 QSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQA  106 (201)
Q Consensus        30 ~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  106 (201)
                      ++++.+++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            45556666666555  5555455555666666666665555 444555566666666666554 4444444566666666


Q ss_pred             CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecccCCCC
Q 028942          107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ++|.++.++  ..+..++.|+.|++++|.+..++.   ..+..+++|+.|++.+|.+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666554  445556666666666666655554   34566666666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=1.1e-18  Score=128.33  Aligned_cols=149  Identities=25%  Similarity=0.321  Sum_probs=131.3

Q ss_pred             cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942            5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS   84 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   84 (201)
                      ++.++..+.++++.++.++ .+..+++|+.+++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            3455666788888888877 6788999999999999999887 68889999999999999999877 8899999999999


Q ss_pred             CCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           85 NNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +|.+..++....  ++|+.|++++|.++.++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++..
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            999998876433  89999999999999886 4788999999999999998886  378899999999999999854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=1.1e-17  Score=138.07  Aligned_cols=159  Identities=26%  Similarity=0.397  Sum_probs=116.7

Q ss_pred             ccCCCccEEecCCCcCc---ccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch---------
Q 028942            4 SKLINIQRLVLDDNHIE---RLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE---------   70 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---------   70 (201)
                      ..+++|+.|++++|.+.   .+|..+..+++|+.+++++|.++.++. .+..+++|++|++++|.++.++.         
T Consensus       451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  530 (680)
T 1ziw_A          451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY  530 (680)
T ss_dssp             TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred             hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence            33444555555554443   345667777788888888888776654 36677888888888887776422         


Q ss_pred             hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhh-cCcc
Q 028942           71 TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLK-DCKA  147 (201)
Q Consensus        71 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~  147 (201)
                      .+..+++|++|++++|.+..+|. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.++...+. .+++
T Consensus       531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  610 (680)
T 1ziw_A          531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN  610 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred             hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence            25677788888888888887765 467788888888888888877754 56778888888888888888877666 6788


Q ss_pred             CCeEecccCCCChhh
Q 028942          148 LQNISLHNNPISMDQ  162 (201)
Q Consensus       148 L~~l~l~~n~l~~~~  162 (201)
                      |+.+++.+|++.|++
T Consensus       611 L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          611 LTELDMRFNPFDCTC  625 (680)
T ss_dssp             CSEEECTTCCCCBCC
T ss_pred             cCEEEccCCCcccCC
Confidence            888999999888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=6.4e-18  Score=134.07  Aligned_cols=156  Identities=25%  Similarity=0.356  Sum_probs=130.5

Q ss_pred             ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCccc-chhhhcCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCL-PETIGSLRNL   78 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L   78 (201)
                      .|.++++|++|++++|.+..+ |..|..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            578899999999999999976 77899999999999999999988764 67899999999999999876 5567888999


Q ss_pred             CEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942           79 VLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus        79 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      ++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            9999999998866 4567888999999999999988875 4778888999999988887776655667776776666665


Q ss_pred             C
Q 028942          157 P  157 (201)
Q Consensus       157 ~  157 (201)
                      .
T Consensus       211 ~  211 (477)
T 2id5_A          211 P  211 (477)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=5.6e-18  Score=142.39  Aligned_cols=154  Identities=25%  Similarity=0.345  Sum_probs=83.4

Q ss_pred             cCCCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCC-CCEE
Q 028942            5 KLINIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRN-LVLL   81 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L   81 (201)
                      .+++|+.|++++|.+..+|.  .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++ |+.|
T Consensus       546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred             ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence            44466666666666666666  6666666666666666666665 556666666666666666666666666666 6666


Q ss_pred             EeeCCCCCcCcccccCCCC--CceEEcCCCcCCcCCh----hhh--CCCccceEEccCCcCCccChhhhhcCccCCeEec
Q 028942           82 NVSNNKLKSLPESIGSCYS--LEELQANDNLIGELPA----SIC--NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL  153 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~~~----~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l  153 (201)
                      ++++|.+..+|..+.....  |+.|++++|.++..++    .+.  ..++|+.|++++|.+..+|..++..+++|+.|++
T Consensus       625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            6666666655544333322  4444444444432110    111  1124444455555444444444444445555555


Q ss_pred             ccCCCC
Q 028942          154 HNNPIS  159 (201)
Q Consensus       154 ~~n~l~  159 (201)
                      ++|.++
T Consensus       705 s~N~L~  710 (876)
T 4ecn_A          705 SNNLMT  710 (876)
T ss_dssp             CSCCCS
T ss_pred             CCCcCC
Confidence            544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=3.3e-18  Score=129.82  Aligned_cols=162  Identities=30%  Similarity=0.445  Sum_probs=126.2

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcc--c-chhhhcC--
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTC--L-PETIGSL--   75 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~--~-~~~~~~~--   75 (201)
                      .|.++++|++|++++|.+..+|..+.  ++|+.+++++|.++.++. .+..+++|++|++++|.++.  + +..+..+  
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L  174 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL  174 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred             HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence            46778899999999998888776654  688888888888887754 36677888888888777652  1 2222221  


Q ss_pred             ------------------CCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942           76 ------------------RNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        76 ------------------~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~  135 (201)
                                        ++|++|++++|.+..++ ..+..+++|+.|++++|.++.++. .+..++.|+.|++++|.+.
T Consensus       175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence                              46777777777777664 567888999999999999998765 6888999999999999999


Q ss_pred             ccChhhhhcCccCCeEecccCCCChhhhccc
Q 028942          136 QIPANLLKDCKALQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       136 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l  166 (201)
                      .+|.. +..+++|+.|++++|.++......+
T Consensus       255 ~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          255 RVPAG-LPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             BCCTT-GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             ecChh-hhcCccCCEEECCCCCCCccChhHc
Confidence            99876 6889999999999999986544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=5.4e-18  Score=134.92  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             CcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-chhhh-cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCC
Q 028942           32 LKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAND  108 (201)
Q Consensus        32 L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  108 (201)
                      |+.|++++|.++.+ |..+..+++|+.|++++|.++.+ |..+. .+++|++|++++|.+..++. ...+++|+.|++++
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSS  200 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCC
Confidence            33333333433333 22445566666777777666653 33443 56677777777777766543 23477888888888


Q ss_pred             CcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhc-cccChhHHH
Q 028942          109 NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ-QMEGFEEFE  173 (201)
Q Consensus       109 n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~l~~~~~l~  173 (201)
                      |.++.++..+..++.|+.|++++|.+..+|.. +..+++|+.+++.+|++.|.... .+..++.+.
T Consensus       201 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             CCCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            88888887788888999999999999888775 57788999999999999855442 233344443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.1e-17  Score=134.81  Aligned_cols=148  Identities=34%  Similarity=0.435  Sum_probs=110.7

Q ss_pred             CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942            6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN   85 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   85 (201)
                      +++|+.|++++|.++.+|. +..  +|+.|++++|.++.+|.   .+++|+.|++++|.++.+|.   .+++|++|++++
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC
Confidence            4566666666666666665 433  67777777777776665   56778888888888777765   457888888888


Q ss_pred             CCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCcc-------ceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942           86 NKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHL-------KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      |.+..+|. +.  ++|+.|++++|.++.+|. +..  +|       +.|++++|.++.+|..++. +++|+.|++++|++
T Consensus       170 N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          170 NQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPL  242 (571)
T ss_dssp             SCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSC
T ss_pred             CCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcC
Confidence            88888877 44  889999999999998887 443  67       9999999999999987654 99999999999999


Q ss_pred             ChhhhccccCh
Q 028942          159 SMDQFQQMEGF  169 (201)
Q Consensus       159 ~~~~~~~l~~~  169 (201)
                      +......+..+
T Consensus       243 ~~~~p~~l~~l  253 (571)
T 3cvr_A          243 SSRIRESLSQQ  253 (571)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CCcCHHHHHHh
Confidence            97665544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.1e-17  Score=137.89  Aligned_cols=159  Identities=25%  Similarity=0.322  Sum_probs=110.1

Q ss_pred             cccCCCccEEecCCCcCc-ccC-ccccCCCCCcEEeccCCCCc---------------------------cCchhhhCcC
Q 028942            3 ISKLINIQRLVLDDNHIE-RLP-VNLGKLQSLKVMTLDGNRIT---------------------------SLPDELGQLV   53 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~l~l~~~~l~---------------------------~~~~~~~~l~   53 (201)
                      |.++++|+.|++++|.+. .++ ..+..+++|+.+++++|.+.                           .+|..+..++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            455666666666666665 233 34555555555555555443                           2345566677


Q ss_pred             CCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc---------cccCCCCCceEEcCCCcCCcCCh-hhhCCC
Q 028942           54 RLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE---------SIGSCYSLEELQANDNLIGELPA-SICNLI  122 (201)
Q Consensus        54 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~  122 (201)
                      +|+.|++++|.++.+++ .+..+.+|++|++++|.+..++.         .+..+++|+.|++++|.++.+|. .+..++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            77777777777777654 35677778888888887765421         25667788888888888887775 467788


Q ss_pred             ccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942          123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       123 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      .|+.|++++|.++.++..++..+++|+.|++++|.++..
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            888888888888888877778888888888888887743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=1.6e-17  Score=135.55  Aligned_cols=152  Identities=28%  Similarity=0.384  Sum_probs=119.9

Q ss_pred             CccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEee
Q 028942            8 NIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVS   84 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~   84 (201)
                      +++.|++++|.|+.++ ..|..+++|+.|++++|.++.+++ ++..+++|++|++++|+++.+|+ .|..+.+|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            6788999999988875 468888999999999998887754 57788899999999998888865 46788899999999


Q ss_pred             CCCCCcCcc-cccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccC----CeEecccCC
Q 028942           85 NNKLKSLPE-SIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL----QNISLHNNP  157 (201)
Q Consensus        85 ~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L----~~l~l~~n~  157 (201)
                      +|.+..++. .+..+++|+.|++++|.++.  +|..+..++.|++|++++|.+..++...+..+..+    ..+++..|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            998888765 47888889999999998874  45677788889999999998877765444444333    356677777


Q ss_pred             CC
Q 028942          158 IS  159 (201)
Q Consensus       158 l~  159 (201)
                      +.
T Consensus       213 l~  214 (635)
T 4g8a_A          213 MN  214 (635)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.75  E-value=1.7e-17  Score=135.16  Aligned_cols=157  Identities=26%  Similarity=0.319  Sum_probs=91.0

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCc-ccch-hhhcCCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLT-CLPE-TIGSLRNLV   79 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~~~~L~   79 (201)
                      |.++++|++|++++|.++.+|..+..+++|+.+++++|.+..+ |..+..+++|++|++++|.+. .++. .+..+++|+
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            5667788888888888887877777788888888888877755 445566666666666666554 3332 245555566


Q ss_pred             EEEeeCCCCCcC---cccccCCCCCceEEcCCCcCCcC-Chhh-------------------------hCCCccceEEcc
Q 028942           80 LLNVSNNKLKSL---PESIGSCYSLEELQANDNLIGEL-PASI-------------------------CNLIHLKSLCLN  130 (201)
Q Consensus        80 ~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~n~i~~~-~~~~-------------------------~~~~~L~~L~l~  130 (201)
                      +|++++|.+..+   +..+..+++|+.|++++|.++.+ +..+                         ..++.|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            666655555433   23344455555555555544432 2233                         344444555555


Q ss_pred             CCcCCccChhhhhcCccCCeEecccCCCC
Q 028942          131 NNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       131 ~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +|.+...+...+..+++|++|++++|.+.
T Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          434 HSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             TCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             CCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            55444443333445555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=2.3e-17  Score=130.00  Aligned_cols=89  Identities=19%  Similarity=0.305  Sum_probs=51.8

Q ss_pred             hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCC
Q 028942           72 IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ  149 (201)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  149 (201)
                      +..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+..++.|+.|++++|.+..++...+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            34455555555555555544 33455556666666666666544 33455566666666666666555444456666666


Q ss_pred             eEecccCCCCh
Q 028942          150 NISLHNNPISM  160 (201)
Q Consensus       150 ~l~l~~n~l~~  160 (201)
                      +|++++|.++.
T Consensus       375 ~L~L~~N~l~~  385 (455)
T 3v47_A          375 ELALDTNQLKS  385 (455)
T ss_dssp             EEECCSSCCSC
T ss_pred             EEECCCCcccc
Confidence            66666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=7.3e-18  Score=126.91  Aligned_cols=155  Identities=18%  Similarity=0.186  Sum_probs=129.4

Q ss_pred             cCCCccEEecCCCcCc-ccCccc--cCCCCCcEEeccCCCCccCchhhhCc-----CCCCEEEecCCcCcccc-hhhhcC
Q 028942            5 KLINIQRLVLDDNHIE-RLPVNL--GKLQSLKVMTLDGNRITSLPDELGQL-----VRLERLSILGNMLTCLP-ETIGSL   75 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~~   75 (201)
                      ++++|++|++++|.+. .+|..+  ..+++|+.|++++|.++.+|..+..+     ++|++|++++|.+..++ ..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6889999999999998 567765  88999999999999999877777666     89999999999999886 678889


Q ss_pred             CCCCEEEeeCCCCCc---Ccccc--cCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccCCcCCccC-hhhhhcC
Q 028942           76 RNLVLLNVSNNKLKS---LPESI--GSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQIP-ANLLKDC  145 (201)
Q Consensus        76 ~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~  145 (201)
                      ++|++|++++|.+..   ++..+  ..+++|+.|++++|.++.++.    .+..+++|+.|++++|.+...+ ...+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            999999999998653   23333  788999999999999985542    2456789999999999996654 3445668


Q ss_pred             ccCCeEecccCCCC
Q 028942          146 KALQNISLHNNPIS  159 (201)
Q Consensus       146 ~~L~~l~l~~n~l~  159 (201)
                      ++|+.|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            89999999999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=2.7e-17  Score=129.88  Aligned_cols=102  Identities=28%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV   83 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   83 (201)
                      .++++|+.|++++|.++.+| .+..+++|+.|++++|.++.+|  +..+++|++|++++|.++.++  +..+++|++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence            34555566666665555554 4555555555555555555543  444555555555555555442  444455555555


Q ss_pred             eCCCCCcCcccccCCCCCceEEcCCCcCC
Q 028942           84 SNNKLKSLPESIGSCYSLEELQANDNLIG  112 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (201)
                      ++|.+..++  +..+++|+.|++++|.++
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCccc
Confidence            555444432  334444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=2.2e-17  Score=126.68  Aligned_cols=150  Identities=23%  Similarity=0.329  Sum_probs=130.1

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hh-CcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LG-QLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNN   86 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~   86 (201)
                      +.++.+++.++.+|..+.  ..++.|++++|.++.++.. +. .+++|++|++++|.++.+++ .+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578999999999987664  4689999999999988655 44 89999999999999999864 5889999999999999


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhh---hcCccCCeEecccCCCChh
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLL---KDCKALQNISLHNNPISMD  161 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~l~l~~n~l~~~  161 (201)
                      .+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++..++   ..+++|+.|++++|.|+..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            9998765 578899999999999999977 4578889999999999999999998776   5689999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.6e-17  Score=117.95  Aligned_cols=152  Identities=27%  Similarity=0.393  Sum_probs=127.9

Q ss_pred             CCCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEE
Q 028942            6 LINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLN   82 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~   82 (201)
                      .+++++|++++|.+..++. .|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+++. +..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            4579999999999998865 478899999999999999988665 57899999999999999988654 67899999999


Q ss_pred             eeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..       .++.|+.+++..|.++.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            99999998865 468899999999999999988764 6788999999999997643       35567778887777765


Q ss_pred             hhhc
Q 028942          161 DQFQ  164 (201)
Q Consensus       161 ~~~~  164 (201)
                      ....
T Consensus       180 ~ip~  183 (208)
T 2o6s_A          180 VVRN  183 (208)
T ss_dssp             TBBC
T ss_pred             eeec
Confidence            4433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=1.8e-17  Score=130.85  Aligned_cols=158  Identities=25%  Similarity=0.320  Sum_probs=137.0

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      ++..+++|+.|++++|.++.++  +..+++|+.|++++|.++.++  +..+++|++|++++|.++.++  +..+++|++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            5778999999999999999886  888999999999999999875  788999999999999999885  7888999999


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++++|.+..++  +..+++|+.|++++| .+..+  .+..++.|+.|++++|.++.++   +..+++|+.|++.+|.++.
T Consensus       133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe
Confidence            99999998874  778999999999999 55566  3677899999999999998887   5789999999999999987


Q ss_pred             hhhccccChhHH
Q 028942          161 DQFQQMEGFEEF  172 (201)
Q Consensus       161 ~~~~~l~~~~~l  172 (201)
                      ..+..+..+..|
T Consensus       206 ~~l~~l~~L~~L  217 (457)
T 3bz5_A          206 LDLNQNIQLTFL  217 (457)
T ss_dssp             CCCTTCTTCSEE
T ss_pred             eccccCCCCCEE
Confidence            655555544443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=7.4e-17  Score=127.72  Aligned_cols=150  Identities=25%  Similarity=0.412  Sum_probs=96.3

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.+..++ .+..+++|+.+++++|.+..++. +..+++|++|++++|.+..+++ +..+++|+.|+
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLE  293 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence            345667777777777766653 45666777777777777666543 5666677777777777666644 55666677777


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +++|.+..++. +..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++.  +..+++|+.|++.+|.+.
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccC
Confidence            77776665544 5566666677776666665544 4556666666666666655532  456666666666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.2e-16  Score=126.53  Aligned_cols=150  Identities=28%  Similarity=0.483  Sum_probs=91.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.+..+++ +..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++ +..+++|+.|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  271 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELK  271 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEE
Confidence            4455666666666666665543 555666666666666666553 34556666666666666665544 55566666666


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++.  +..+++|+.|++.+|.++
T Consensus       272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          272 LGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            66666665544 5556666666666666665544 4556666666666666655543  455666666666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=6.2e-18  Score=136.70  Aligned_cols=159  Identities=23%  Similarity=0.247  Sum_probs=132.5

Q ss_pred             ccCCCccEEecCCCcCccc---CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch--hhhcCCCC
Q 028942            4 SKLINIQRLVLDDNHIERL---PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE--TIGSLRNL   78 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L   78 (201)
                      ..+++|++|++++|.+..+   +..+..+++|+.+++++|.+..++..+..+++|++|++++|.+...++  .+..+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            4677888888888887754   566788889999999999888776667888899999999998877633  57788899


Q ss_pred             CEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCC--cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           79 VLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        79 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      ++|++++|.+... +..+..+++|+.|++++|.++  .+|..+..+++|+.|++++|.+..+....+..+++|+.|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            9999999988754 566788999999999999887  5777888899999999999999888666688999999999999


Q ss_pred             CCCChhh
Q 028942          156 NPISMDQ  162 (201)
Q Consensus       156 n~l~~~~  162 (201)
                      |.++...
T Consensus       504 n~l~~~~  510 (570)
T 2z63_A          504 NQLKSVP  510 (570)
T ss_dssp             SCCSCCC
T ss_pred             CcCCCCC
Confidence            9887543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=2.4e-17  Score=113.25  Aligned_cols=134  Identities=23%  Similarity=0.260  Sum_probs=120.6

Q ss_pred             cCCCccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEE
Q 028942            5 KLINIQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLL   81 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L   81 (201)
                      ..++++.|++++|.+.  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999998  8898889999999999999999987 677889999999999999998 66677779999999


Q ss_pred             EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccCCcCCccCh
Q 028942           82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQIPA  139 (201)
Q Consensus        82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~~~l~~~~~  139 (201)
                      ++++|.+..++  ..+..+++|+.|++++|.++.++.    .+..++.|+.|++++|.+.+++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999876  678899999999999999998876    78889999999999999987765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=3.3e-17  Score=133.45  Aligned_cols=159  Identities=22%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             cccCCCccEEecCCCcCccc---CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-c-hhhhcCC
Q 028942            3 ISKLINIQRLVLDDNHIERL---PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-P-ETIGSLR   76 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~   76 (201)
                      +.++++|++|++++|.+..+   +..+..+++|+.+++++|.+..+ |..+..+++|++|++++|.+... + ..+..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            33445555555555554433   33445555555555555555433 33444555555555555555433 1 1244555


Q ss_pred             CCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCc--C--ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942           77 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE--L--PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        77 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      +|++|++++|.+... +..+..+++|+.|++++|.++.  +  +..+..+++|+.|++++|.+..++...+..+++|+.|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            555566655555533 3344555566666666665543  1  1234555566666666666655544445556666666


Q ss_pred             ecccCCCChh
Q 028942          152 SLHNNPISMD  161 (201)
Q Consensus       152 ~l~~n~l~~~  161 (201)
                      ++++|.++..
T Consensus       506 ~Ls~N~l~~~  515 (606)
T 3t6q_A          506 DLSHNRLTSS  515 (606)
T ss_dssp             ECCSSCCCGG
T ss_pred             ECCCCccCcC
Confidence            6666665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=1.8e-17  Score=133.56  Aligned_cols=153  Identities=21%  Similarity=0.297  Sum_probs=79.4

Q ss_pred             CccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEee
Q 028942            8 NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVS   84 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~   84 (201)
                      .++.|++++|.++.+ |..|..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+++. +..+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            455555555555544 334555555555555555555442 3345555555555555555554432 4555555555555


Q ss_pred             CCCCCcC--cccccCCCCCceEEcCCCc-CCcCC-hhhhCCCccceEEccCC------------------------cCCc
Q 028942           85 NNKLKSL--PESIGSCYSLEELQANDNL-IGELP-ASICNLIHLKSLCLNNN------------------------NIGQ  136 (201)
Q Consensus        85 ~~~~~~~--~~~~~~~~~L~~L~l~~n~-i~~~~-~~~~~~~~L~~L~l~~~------------------------~l~~  136 (201)
                      +|.+..+  +..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++|                        .+..
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            5555422  3344455555555555554 33333 23444444444444444                        4444


Q ss_pred             cChhhhhcCccCCeEecccCCCCh
Q 028942          137 IPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       137 ~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++...+..+++|+.|++++|.+..
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cchhhHhhcccccEEEccCCcccc
Confidence            444434556777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.73  E-value=1.7e-17  Score=114.86  Aligned_cols=132  Identities=20%  Similarity=0.309  Sum_probs=91.7

Q ss_pred             ccCCCCCcEEeccCCCCccCchhhhCcC-CCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCce
Q 028942           26 LGKLQSLKVMTLDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEE  103 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~  103 (201)
                      +..+.+++.+++++|.++.++. +..+. .|++|++++|.++.+ ..+..+++|++|++++|.+..+|..+ ..+++|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4456667777777777666643 33333 677777777777666 45666677777777777777665433 66777777


Q ss_pred             EEcCCCcCCcCCh--hhhCCCccceEEccCCcCCccChh---hhhcCccCCeEecccCCCC
Q 028942          104 LQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIPAN---LLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       104 L~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~l~l~~n~l~  159 (201)
                      |++++|.++.++.  .+..+++|+.|++++|.+..++..   ++..+++|+.+++..|.+.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777777765  566777788888888888766654   5677888888888877755

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=7.7e-17  Score=116.17  Aligned_cols=130  Identities=32%  Similarity=0.391  Sum_probs=117.5

Q ss_pred             CCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l   83 (201)
                      ++|+.|++++|.+..+ +..|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+++. +..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            6799999999999987 66789999999999999999988754 57899999999999999998664 578999999999


Q ss_pred             eCCCCCcCcccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCc
Q 028942           84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~  136 (201)
                      ++|.+..+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.-
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999999999889999999999999999998874 57788999999999999853

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=6.6e-17  Score=113.55  Aligned_cols=128  Identities=25%  Similarity=0.437  Sum_probs=97.4

Q ss_pred             cEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcC
Q 028942           33 KVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI  111 (201)
Q Consensus        33 ~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i  111 (201)
                      +.++.+++.++.+|..+  .+.+++|++++|.++.+|..+..+.+|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            45666666666666543  24677777777777777777777777788888877777664 3567778888888888888


Q ss_pred             CcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          112 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       112 ~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            87754 5777888888999888888888877888889999999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=8.7e-17  Score=113.28  Aligned_cols=132  Identities=20%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCcc-CchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCC
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLV   79 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~   79 (201)
                      .+..+++|++|++++|.+..++ .+..+++|+.|++++|.++. .+..+..+++|++|++++|.++. .+..+..+++|+
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            4677899999999999777665 68889999999999999985 56778899999999999999986 467788999999


Q ss_pred             EEEeeCCC-CCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCc
Q 028942           80 LLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        80 ~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~  136 (201)
                      +|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus       140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99999998 88886 5888999999999999999987 67889999999999999854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=8.9e-17  Score=115.16  Aligned_cols=129  Identities=26%  Similarity=0.417  Sum_probs=115.8

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV   83 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l   83 (201)
                      +.++.|++++|.+..++. .|..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+.+|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            478999999999998865 789999999999999999977 67789999999999999999999765 578999999999


Q ss_pred             eCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942           84 SNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~  135 (201)
                      ++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999987 4578889999999999999998875 4778899999999999983

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=7.4e-17  Score=131.62  Aligned_cols=151  Identities=22%  Similarity=0.239  Sum_probs=127.8

Q ss_pred             EecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCC
Q 028942           12 LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLK   89 (201)
Q Consensus        12 L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~   89 (201)
                      ++-++-.++.+|..+.  ++++.|++++|.++.++ .+|.++++|++|++++|.++.+++ .|..+++|++|++++|.+.
T Consensus        36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            4445556778887654  47999999999999886 468999999999999999999865 5788999999999999999


Q ss_pred             cCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccC-hhhhhcCccCCeEecccCCCChhhhc
Q 028942           90 SLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQ  164 (201)
Q Consensus        90 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~  164 (201)
                      .+|. .+..+++|+.|++++|.++.++. .++.+++|+.|++++|.+..+. ...+..++.|++|++.+|.++.....
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            8875 57889999999999999998875 4788999999999999996543 34578899999999999998754433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=1.4e-17  Score=126.33  Aligned_cols=158  Identities=20%  Similarity=0.220  Sum_probs=93.8

Q ss_pred             ccCCCccEEecCCCcCcc--cCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCC-cCcc--cchhhhcCCC
Q 028942            4 SKLINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGN-MLTC--LPETIGSLRN   77 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~~~~   77 (201)
                      ..+++|++|++++|.+..  ++..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++.  ++..+..+++
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            445667777777776652  5555666677777777777665 34555666667777777776 4552  4445566666


Q ss_pred             CCEEEeeCC-CCCc--CcccccCCC-CCceEEcCCC--cCC--cCChhhhCCCccceEEccCCc-CCccChhhhhcCccC
Q 028942           78 LVLLNVSNN-KLKS--LPESIGSCY-SLEELQANDN--LIG--ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKAL  148 (201)
Q Consensus        78 L~~L~l~~~-~~~~--~~~~~~~~~-~L~~L~l~~n--~i~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L  148 (201)
                      |++|++++| .+..  ++..+..++ +|+.|++++|  .++  .++..+..+++|+.|++++|. ++......+..+++|
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            777777766 6553  344455566 6666666666  332  344445556666666666666 432222234556666


Q ss_pred             CeEecccC-CCChh
Q 028942          149 QNISLHNN-PISMD  161 (201)
Q Consensus       149 ~~l~l~~n-~l~~~  161 (201)
                      +.|++.+| .+...
T Consensus       250 ~~L~l~~~~~~~~~  263 (336)
T 2ast_B          250 QHLSLSRCYDIIPE  263 (336)
T ss_dssp             CEEECTTCTTCCGG
T ss_pred             CEeeCCCCCCCCHH
Confidence            66666666 34333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=6.1e-17  Score=109.01  Aligned_cols=124  Identities=27%  Similarity=0.322  Sum_probs=64.0

Q ss_pred             CCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCc-CcccccCCCCCceEEc
Q 028942           30 QSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQA  106 (201)
Q Consensus        30 ~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  106 (201)
                      ++++.+++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34444444444444  3444344444455555555544444 334444555555555555544 3444444555555555


Q ss_pred             CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecc
Q 028942          107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH  154 (201)
Q Consensus       107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~  154 (201)
                      ++|.++.++  ..+..++.|+.|++++|.+..++.   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555443  445556666666666666655554   445666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=5.5e-18  Score=127.46  Aligned_cols=153  Identities=17%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CCCccEEecCCCcCcc-cCccc--cCCCCCcEEeccCCCCccC-c----hhhhCcCCCCEEEecCCcCcccc-hhhhcCC
Q 028942            6 LINIQRLVLDDNHIER-LPVNL--GKLQSLKVMTLDGNRITSL-P----DELGQLVRLERLSILGNMLTCLP-ETIGSLR   76 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~-l~~~~--~~l~~L~~l~l~~~~l~~~-~----~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~   76 (201)
                      +++|++|++++|.+.. .|..+  ..+++|+.|++++|.+... +    ..+..+++|++|++++|.+..++ ..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3456777777776663 34444  5666677777776666632 1    22335666677777766666553 3455666


Q ss_pred             CCCEEEeeCCCCCc---Cc--ccccCCCCCceEEcCCCcCCcCChh----hhCCCccceEEccCCcCCcc-ChhhhhcC-
Q 028942           77 NLVLLNVSNNKLKS---LP--ESIGSCYSLEELQANDNLIGELPAS----ICNLIHLKSLCLNNNNIGQI-PANLLKDC-  145 (201)
Q Consensus        77 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l~~~~l~~~-~~~~~~~~-  145 (201)
                      +|++|++++|.+..   ++  ..+..+++|+.|++++|.++.++..    +..++.|++|++++|.+... |.. +..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            66666666666542   21  1224555666666666666544431    34455666666666666444 322 2222 


Q ss_pred             --ccCCeEecccCCCC
Q 028942          146 --KALQNISLHNNPIS  159 (201)
Q Consensus       146 --~~L~~l~l~~n~l~  159 (201)
                        ++|++|++++|.++
T Consensus       249 ~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCTTCCCEECCSSCCC
T ss_pred             CcCcCCEEECCCCCCC
Confidence              45666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.71  E-value=5.9e-17  Score=112.15  Aligned_cols=134  Identities=21%  Similarity=0.241  Sum_probs=117.1

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhh-hcCCCCCE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVL   80 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~   80 (201)
                      ++.++.+|++|++++|.++.++......++|+.|++++|.++.+ ..+..+++|++|++++|.++.+|+.+ ..+++|++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            46778899999999999998865444445999999999999987 56788999999999999999987655 88999999


Q ss_pred             EEeeCCCCCcCcc--cccCCCCCceEEcCCCcCCcCChh----hhCCCccceEEccCCcCCc
Q 028942           81 LNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPAS----ICNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        81 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l~~~~l~~  136 (201)
                      |++++|.+..+|.  .+..+++|+.+++++|.++.++..    +..++.|+.|+++.|...+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999998876  788899999999999999988874    8889999999999988744

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=4.6e-17  Score=109.62  Aligned_cols=125  Identities=24%  Similarity=0.272  Sum_probs=108.1

Q ss_pred             cCCCccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEE
Q 028942            5 KLINIQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLL   81 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L   81 (201)
                      ..++++.|++++|.+.  .+|..+..+++|+.+++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467899999999998  7888888999999999999999887 667888999999999999988 66667778999999


Q ss_pred             EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEcc
Q 028942           82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLN  130 (201)
Q Consensus        82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~  130 (201)
                      ++++|.+..++  ..+..+++|+.|++++|.++.++.    .+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999998764  678889999999999999988875    57788899998875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=113.48  Aligned_cols=129  Identities=22%  Similarity=0.293  Sum_probs=114.6

Q ss_pred             CCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEE
Q 028942            7 INIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLN   82 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~   82 (201)
                      ..+++|++++|.++.+++  .|..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999998743  48899999999999999998755 68899999999999999998865 478899999999


Q ss_pred             eeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCC
Q 028942           83 VSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        83 l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~  135 (201)
                      +++|.+..+ |..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999999977 56788899999999999999987 567888999999999999984

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=7.2e-17  Score=121.73  Aligned_cols=153  Identities=21%  Similarity=0.256  Sum_probs=102.6

Q ss_pred             ccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh-----------
Q 028942            4 SKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET-----------   71 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----------   71 (201)
                      ..+++|++|++++|.+..++ ..+..+++|+.|++++|.+...++ +..+++|++|++++|.++.++..           
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            34568888888888888775 567888888888888888876544 67788888888888877654321           


Q ss_pred             ------hhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhh-hCCCccceEEccCCcCCccChhhh
Q 028942           72 ------IGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASI-CNLIHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus        72 ------~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~~~~  142 (201)
                            ...+++|++|++++|.+..++. .+..+++|+.|++++|.++.++ ..+ ..++.|+.|++++|.+..++..  
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--  187 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--  187 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--
Confidence                  0123455666666666655532 4555667777777777776543 222 3466777777777777666442  


Q ss_pred             hcCccCCeEecccCCCC
Q 028942          143 KDCKALQNISLHNNPIS  159 (201)
Q Consensus       143 ~~~~~L~~l~l~~n~l~  159 (201)
                      ..+++|+.|++++|.++
T Consensus       188 ~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CCCTTCCEEECCSSCCC
T ss_pred             cccccCCEEECCCCcCC
Confidence            24677777777777776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=2.5e-16  Score=126.19  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=123.9

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK   87 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~   87 (201)
                      +.+++++|.++.+|..+.  ++++.+++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            578999999999988766  89999999999999775 5788999999999999999987 6688899999999999999


Q ss_pred             CCcCcccccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccC--CeEecccCCC
Q 028942           88 LKSLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL--QNISLHNNPI  158 (201)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L--~~l~l~~n~l  158 (201)
                      +..+|..  .+++|+.|++++|.++.  +|..++.+++|++|++++|.+...   .+..+++|  +.+++.+|.+
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence            9988776  78999999999999986  567889999999999999998652   35667777  9999999988

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1.3e-17  Score=138.43  Aligned_cols=116  Identities=31%  Similarity=0.410  Sum_probs=77.5

Q ss_pred             CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCc
Q 028942           23 PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLE  102 (201)
Q Consensus        23 ~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  102 (201)
                      +..+..+..|+.|++++|.+..+|..+..++.|++|++++|.++.+|..+..+.+|++|++++|.+..+|..+..+++|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            44566666777777777777766666666777777777777777666666667777777777777776666666677777


Q ss_pred             eEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC
Q 028942          103 ELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP  138 (201)
Q Consensus       103 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~  138 (201)
                      .|++++|.++.+|..+..+++|+.|++++|.+...+
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence            777777777777666666777777777777765433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.6e-16  Score=111.52  Aligned_cols=128  Identities=23%  Similarity=0.411  Sum_probs=69.1

Q ss_pred             cEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh--hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCC
Q 028942           33 KVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDN  109 (201)
Q Consensus        33 ~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n  109 (201)
                      +.++++++.++.+|..+.  ..+++|++++|.++.+++.  +..+++|++|++++|.+..+ |..+..+++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            344444444444443221  1445555555555544331  44555555555555555544 334555555666666666


Q ss_pred             cCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          110 LIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       110 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .++.++. .+..+++|+.|++++|.+..+....+..+++|+.|++.+|++.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            5554433 2455666666666666665554444566666777777777766553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=1.5e-16  Score=126.60  Aligned_cols=153  Identities=21%  Similarity=0.241  Sum_probs=103.2

Q ss_pred             cCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh------------
Q 028942            5 KLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET------------   71 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------   71 (201)
                      .+++|+.|++++|.+..++ ..|..+++|+.|++++|.++..++ +..+++|++|++++|.++.++..            
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            3457889999999888774 578888999999999998886544 77788888888888877665422            


Q ss_pred             -----hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-Chhhh-CCCccceEEccCCcCCccChhhhh
Q 028942           72 -----IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASIC-NLIHLKSLCLNNNNIGQIPANLLK  143 (201)
Q Consensus        72 -----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~  143 (201)
                           ...+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+ +..+. .++.|+.|++++|.+..++..  .
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--V  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--C
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--c
Confidence                 01234556666666666544 33455666777777777766643 33333 466777777777777655442  3


Q ss_pred             cCccCCeEecccCCCCh
Q 028942          144 DCKALQNISLHNNPISM  160 (201)
Q Consensus       144 ~~~~L~~l~l~~n~l~~  160 (201)
                      .+++|+.|++++|.++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CCTTCCEEECCSSCCCE
T ss_pred             cCCCCCEEECCCCCCCC
Confidence            46777777777777763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.69  E-value=4e-16  Score=126.15  Aligned_cols=146  Identities=23%  Similarity=0.242  Sum_probs=124.5

Q ss_pred             CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEe
Q 028942            6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNV   83 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l   83 (201)
                      +...+.++++++.++.+|..+.  ++++.|++++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            3455789999999999988664  79999999999999885 5788999999999999999987 566888999999999


Q ss_pred             eCCCCCcCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcCccC--CeEecccCCC
Q 028942           84 SNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL--QNISLHNNPI  158 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L--~~l~l~~n~l  158 (201)
                      ++|.+..+|..  .+++|+.|++++|.++.++  ..+..+++|++|++++|.+....   +..+++|  +.+++++|.+
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence            99999988876  7899999999999998764  68899999999999999996643   3445555  9999999988

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=8.4e-17  Score=122.06  Aligned_cols=163  Identities=20%  Similarity=0.261  Sum_probs=132.6

Q ss_pred             cccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCC-CCc--cCchhhhCcCCCCEEEecCC-cCcc--cchhhhcC
Q 028942            3 ISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGN-RIT--SLPDELGQLVRLERLSILGN-MLTC--LPETIGSL   75 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~-~l~--~~~~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~~   75 (201)
                      +.++++|++|++++|.+. ..+..+..+++|+.|++++| .++  .++..+..+++|++|++++| .++.  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            467899999999999988 45777888999999999999 677  36666888999999999999 8875  56677889


Q ss_pred             C-CCCEEEeeCCC--CC--cCcccccCCCCCceEEcCCCc-CC-cCChhhhCCCccceEEccCCc-CCccChhhhhcCcc
Q 028942           76 R-NLVLLNVSNNK--LK--SLPESIGSCYSLEELQANDNL-IG-ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKA  147 (201)
Q Consensus        76 ~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~n~-i~-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~  147 (201)
                      + +|++|++++|.  +.  .++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +.......+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            9 99999999994  43  456667789999999999998 65 455677888999999999995 32222234678999


Q ss_pred             CCeEecccCCCChhhhccc
Q 028942          148 LQNISLHNNPISMDQFQQM  166 (201)
Q Consensus       148 L~~l~l~~n~l~~~~~~~l  166 (201)
                      |+.|++.+| ++...+..+
T Consensus       274 L~~L~l~~~-i~~~~~~~l  291 (336)
T 2ast_B          274 LKTLQVFGI-VPDGTLQLL  291 (336)
T ss_dssp             CCEEECTTS-SCTTCHHHH
T ss_pred             CCEEeccCc-cCHHHHHHH
Confidence            999999999 666555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=1e-15  Score=124.82  Aligned_cols=88  Identities=30%  Similarity=0.373  Sum_probs=65.7

Q ss_pred             CCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           76 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        76 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      ++|++|++++|.+..+|   ..+++|+.|++++|.++.+|.   .+++|+.|++++|.+..+|.. +..+++|+.|++.+
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecC
Confidence            45666666666666655   334677888888888877775   567889999999999888765 68899999999999


Q ss_pred             CCCChhhhccccChh
Q 028942          156 NPISMDQFQQMEGFE  170 (201)
Q Consensus       156 n~l~~~~~~~l~~~~  170 (201)
                      |+++...+..+..+.
T Consensus       294 N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          294 NPLSERTLQALREIT  308 (622)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhcc
Confidence            999877665544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=7.5e-17  Score=124.73  Aligned_cols=88  Identities=24%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             cCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCCcC-----ChhhhC--CCccceEEccCCcCCc-----
Q 028942           74 SLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGEL-----PASICN--LIHLKSLCLNNNNIGQ-----  136 (201)
Q Consensus        74 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~--~~~L~~L~l~~~~l~~-----  136 (201)
                      .+++|++|++++|.++     .++..+..+++|+.|++++|.++..     +..+..  +++|+.|++++|.+..     
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            3344444444444441     2233334444444555554444422     222322  4555555555555543     


Q ss_pred             cChhhhhcCccCCeEecccCCCChh
Q 028942          137 IPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       137 ~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      ++..+..++++|+.|++++|+++..
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHhcCCCceEEEccCCcCCcc
Confidence            4444334455666666666665544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=5.7e-16  Score=124.98  Aligned_cols=136  Identities=30%  Similarity=0.375  Sum_probs=69.5

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh--------------
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG--------------   73 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------   73 (201)
                      +++.|++++|.++.+|..+.  ++|+.|++++|.++.+|   ..+++|++|++++|.++.+|. +.              
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~  133 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLT  133 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCC
Confidence            45555555555555544332  44555555555555444   223444444444444444433 22              


Q ss_pred             ----cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccC-
Q 028942           74 ----SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL-  148 (201)
Q Consensus        74 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L-  148 (201)
                          .+++|++|++++|.+..+|.   .+++|+.|++++|.++.+|. +.  ++|+.|++++|.++.+|.  +..  +| 
T Consensus       134 ~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~  203 (571)
T 3cvr_A          134 MLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV--RNH  203 (571)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC------
T ss_pred             CCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH--hhh
Confidence                34455555555555555444   34556666666666655555 33  566666666666665554  221  44 


Q ss_pred             ------CeEecccCCCC
Q 028942          149 ------QNISLHNNPIS  159 (201)
Q Consensus       149 ------~~l~l~~n~l~  159 (201)
                            +.|++++|.|+
T Consensus       204 ~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          204 HSEETEIFFRCRENRIT  220 (571)
T ss_dssp             ----CCEEEECCSSCCC
T ss_pred             cccccceEEecCCCcce
Confidence                  66677766665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.6e-16  Score=131.91  Aligned_cols=159  Identities=19%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             CCccEEecCCCcCcccCccccCCCCCcEE-----eccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQSLKVM-----TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l-----~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      +.++.|++.++.+...+..+.....|..+     ++..+.+...+..+..+..|+.|++++|.+..+|..+..+.+|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            34667788777777665544433333333     3334444445667888999999999999999999888899999999


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      ++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|.++..
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence            99999999999989999999999999999999999999999999999999999999887 78999999999999999865


Q ss_pred             hhccc
Q 028942          162 QFQQM  166 (201)
Q Consensus       162 ~~~~l  166 (201)
                      ....+
T Consensus       332 ~p~~~  336 (727)
T 4b8c_D          332 FLKIL  336 (727)
T ss_dssp             HHHHH
T ss_pred             ChHHH
Confidence            44433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=8.4e-17  Score=124.44  Aligned_cols=159  Identities=25%  Similarity=0.311  Sum_probs=130.2

Q ss_pred             cccCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCcc-----CchhhhCc---------CCCCEEEecCC
Q 028942            3 ISKLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITS-----LPDELGQL---------VRLERLSILGN   63 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~-----~~~~~~~l---------~~L~~L~l~~~   63 (201)
                      +.++++|++|++++|.+..     ++..+..+++|+.|++++|.++.     ++..+..+         +.|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            4688999999999999985     67788899999999999999873     33344445         89999999999


Q ss_pred             cCc--ccc---hhhhcCCCCCEEEeeCCCCCc------CcccccCCCCCceEEcCCCcCC-----cCChhhhCCCccceE
Q 028942           64 MLT--CLP---ETIGSLRNLVLLNVSNNKLKS------LPESIGSCYSLEELQANDNLIG-----ELPASICNLIHLKSL  127 (201)
Q Consensus        64 ~~~--~~~---~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L  127 (201)
                      .+.  .++   ..+..+++|++|++++|.+..      ++..+..+++|+.|++++|.++     .++..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            987  344   466788999999999999882      2336788999999999999984     567778889999999


Q ss_pred             EccCCcCCccCh----hhhh--cCccCCeEecccCCCChh
Q 028942          128 CLNNNNIGQIPA----NLLK--DCKALQNISLHNNPISMD  161 (201)
Q Consensus       128 ~l~~~~l~~~~~----~~~~--~~~~L~~l~l~~n~l~~~  161 (201)
                      ++++|.++....    ..+.  .+++|+.|++++|.++..
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            999999965421    2243  389999999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=2e-18  Score=121.79  Aligned_cols=137  Identities=23%  Similarity=0.290  Sum_probs=105.7

Q ss_pred             cccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCC
Q 028942           20 ERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY   99 (201)
Q Consensus        20 ~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   99 (201)
                      ..+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .+..++
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~  115 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence            344457888888888888888888887 777888888888888888888777777788888888888888776 467778


Q ss_pred             CCceEEcCCCcCCcCCh--hhhCCCccceEEccCCcCCccC----------hhhhhcCccCCeEecccCCCCh
Q 028942          100 SLEELQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIP----------ANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       100 ~L~~L~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~----------~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +|+.|++++|.++.++.  .+..+++|+.|++++|.+....          ..++..+++|+.|+  +++++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            88888888888887654  5777888888888888874332          23467788888776  566553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=105.42  Aligned_cols=124  Identities=23%  Similarity=0.394  Sum_probs=111.2

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKL   88 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~   88 (201)
                      +.++++++.++.+|..+.  ++++.|++++|.++.+|..+..+++|+.|++++|.++.+++ .+..+.+|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578999999999987654  68999999999999999889999999999999999999864 588999999999999999


Q ss_pred             CcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942           89 KSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        89 ~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~  135 (201)
                      ..++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            98864 68889999999999999998876 4778999999999999883

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=7.7e-16  Score=129.93  Aligned_cols=154  Identities=23%  Similarity=0.252  Sum_probs=112.0

Q ss_pred             CCccEEecCCCcCccc-CccccCCCCCcEEeccCCC-CccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEE
Q 028942            7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNR-ITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLN   82 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~-l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~   82 (201)
                      ++++.|++++|.++.+ +..|..+++|+.|++++|. +..+ |..+..+++|++|++++|.++.+ |..+..+.+|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            5778888888888765 6678888888888888874 3355 56677888888888888888776 56777888888888


Q ss_pred             eeCCCCCc-Cccc--ccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcC--ccCCeEeccc
Q 028942           83 VSNNKLKS-LPES--IGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDC--KALQNISLHN  155 (201)
Q Consensus        83 l~~~~~~~-~~~~--~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--~~L~~l~l~~  155 (201)
                      +++|.+.. ++..  +..+++|+.|++++|.++.++  ..+..+++|+.|++++|.+..+....+..+  ++|+.|++.+
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            88888774 3433  677888888888888887553  457778888888888888765544334444  5666666666


Q ss_pred             CCCCh
Q 028942          156 NPISM  160 (201)
Q Consensus       156 n~l~~  160 (201)
                      |.+..
T Consensus       184 n~l~~  188 (844)
T 3j0a_A          184 NSLYS  188 (844)
T ss_dssp             SBSCC
T ss_pred             Ccccc
Confidence            66543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=2e-15  Score=105.84  Aligned_cols=124  Identities=23%  Similarity=0.348  Sum_probs=109.8

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh--hhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNN   86 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~   86 (201)
                      +.++++++.++.+|..+..  +++.|++++|.++.++..  +..+++|++|++++|.++.+ |..+..+.+|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6899999999999886654  899999999999988653  78899999999999999987 667889999999999999


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCC
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~  135 (201)
                      .+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9997754 578899999999999999966 567888999999999999985

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.64  E-value=3.7e-15  Score=117.61  Aligned_cols=120  Identities=33%  Similarity=0.487  Sum_probs=64.1

Q ss_pred             CCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCC
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN   86 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~   86 (201)
                      ++|++|++++|.++.+| .+..+++|+.+++++|.++.+|..   ..+|++|++++|.++.+| .+..+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            46667777777766666 466666777777776666655432   235666666666655554 3455555555555555


Q ss_pred             CCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCC
Q 028942           87 KLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG  135 (201)
Q Consensus        87 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~  135 (201)
                      .+..+|...   ++|+.|++++|.++.+|. +..++.|+.|++++|.+.
T Consensus       206 ~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          206 SLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC
Confidence            554443321   244444444444444432 334444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=4e-15  Score=102.94  Aligned_cols=129  Identities=28%  Similarity=0.441  Sum_probs=94.7

Q ss_pred             CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCC
Q 028942           32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDN  109 (201)
Q Consensus        32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n  109 (201)
                      .+.++++++.++.+|..+  .+.+++|++++|.++.+++ .+..+++|++|++++|.+..++. .+..+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            445566666666665433  3466777777777766654 34667777777777777776654 3567788888888888


Q ss_pred             cCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          110 LIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       110 ~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .++.++.. +..+++|+.|++++|.+..++..++..+++|+.|++.+|++.++.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88877653 567888999999999998888877788899999999999988654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.64  E-value=5e-15  Score=116.86  Aligned_cols=120  Identities=27%  Similarity=0.409  Sum_probs=65.8

Q ss_pred             CCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCC
Q 028942           30 QSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN  109 (201)
Q Consensus        30 ~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  109 (201)
                      ++|+.+++++|.++.+| ++..+++|++|++++|.++.+|...   .+|++|++++|.+..+| .+..+++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            35566666666555555 3555556666666666555554322   35556666666555554 3555556666666666


Q ss_pred             cCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942          110 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       110 ~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      .++.+|..   .++|+.|++++|.+..++.  +..+++|+.|++++|.++
T Consensus       206 ~l~~l~~~---~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          206 SLKKLPDL---PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             cCCcCCCC---cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCC
Confidence            55554432   2355566666665555542  445555555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=3.1e-15  Score=126.24  Aligned_cols=162  Identities=22%  Similarity=0.263  Sum_probs=131.1

Q ss_pred             ccccCCCccEEecCCCcC-ccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcc-cchh--hhcC
Q 028942            2 EISKLINIQRLVLDDNHI-ERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTC-LPET--IGSL   75 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l-~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~   75 (201)
                      +|.++++|+.|++++|.. ..+ |..|..+++|+.|++++|.+..+ |..+..+++|++|++++|.++. ++..  +..+
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            578999999999999954 466 67899999999999999999966 7788999999999999999986 4444  7889


Q ss_pred             CCCCEEEeeCCCCCcC--cccccCCCCCceEEcCCCcCCcC-ChhhhCC--CccceEEccCCcCCccChhhhhcCc----
Q 028942           76 RNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGEL-PASICNL--IHLKSLCLNNNNIGQIPANLLKDCK----  146 (201)
Q Consensus        76 ~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~----  146 (201)
                      ++|++|++++|.+..+  +..+..+++|+.|++++|.++.+ +..+..+  ++|+.|++++|.+.......+..+.    
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            9999999999999865  34689999999999999998854 4455554  7899999999998543322234444    


Q ss_pred             --cCCeEecccCCCChhhh
Q 028942          147 --ALQNISLHNNPISMDQF  163 (201)
Q Consensus       147 --~L~~l~l~~n~l~~~~~  163 (201)
                        .|+.|++++|.++....
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~  221 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDIT  221 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTT
T ss_pred             cCceeEEecCCCcCchhHH
Confidence              39999999998765433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=7.4e-16  Score=117.74  Aligned_cols=167  Identities=21%  Similarity=0.259  Sum_probs=114.9

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCc-cCch-hhhCcCCCCE-EEecCCcCcccc-hhhhcCCCCCEE
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRIT-SLPD-ELGQLVRLER-LSILGNMLTCLP-ETIGSLRNLVLL   81 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~-~~~~-~~~~l~~L~~-L~l~~~~~~~~~-~~~~~~~~L~~L   81 (201)
                      +++++|++++|.|+.+|. .|..+++|+.|++++|.+. .+|. .+.+++++++ +.+..|+++.++ ..+..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            467888888888888865 5788888888888888764 3443 3556666654 445556777764 345667777777


Q ss_pred             EeeCCCCCcCcc--------------------------cccCC-CCCceEEcCCCcCCcCChhhhCCCccceEEcc-CCc
Q 028942           82 NVSNNKLKSLPE--------------------------SIGSC-YSLEELQANDNLIGELPASICNLIHLKSLCLN-NNN  133 (201)
Q Consensus        82 ~l~~~~~~~~~~--------------------------~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~-~~~  133 (201)
                      ++++|.+..++.                          .+... ..++.|++++|.++.++........++.+++. +|.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            777776553321                          11112 34677888888888887765566778888886 467


Q ss_pred             CCccChhhhhcCccCCeEecccCCCChhhhccccChhHHH
Q 028942          134 IGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFE  173 (201)
Q Consensus       134 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~l~  173 (201)
                      ++.++..++.++++|+.|++++|.|+.-....+..+++|+
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence            7888888889999999999999988754333444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=5.2e-15  Score=119.61  Aligned_cols=121  Identities=25%  Similarity=0.323  Sum_probs=108.4

Q ss_pred             CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCc
Q 028942           31 SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL  110 (201)
Q Consensus        31 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  110 (201)
                      .|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58899999999999986 88999999999999999999999999999999999999999988 78899999999999999


Q ss_pred             CCcC--ChhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEec
Q 028942          111 IGEL--PASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISL  153 (201)
Q Consensus       111 i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l  153 (201)
                      ++.+  |..+..+++|+.|++++|.+...+.   .++..+++|+.|++
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9988  7889999999999999999977654   34566888988864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=2e-15  Score=115.87  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             CCceEEcCCCcCCcCCh-----hhhCC-CccceEEccCCcCCc-----cChhhhhcCccCCeEecccCCCChh
Q 028942          100 SLEELQANDNLIGELPA-----SICNL-IHLKSLCLNNNNIGQ-----IPANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus       100 ~L~~L~l~~n~i~~~~~-----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      +|+.|++++|.++....     .+..+ +.|+.|++++|.++.     ++..+....++|+.|++++|.++..
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            55555555555543321     22333 356666666666644     2222222234666666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=9e-15  Score=118.24  Aligned_cols=137  Identities=26%  Similarity=0.377  Sum_probs=112.9

Q ss_pred             CccccCCCCCcEEe-ccCCCCccCch------hhhC--cCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcc
Q 028942           23 PVNLGKLQSLKVMT-LDGNRITSLPD------ELGQ--LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE   93 (201)
Q Consensus        23 ~~~~~~l~~L~~l~-l~~~~l~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   93 (201)
                      |..+..+++|+.|+ ++.+.+..++.      .+..  ...|+.|++++|.++.+|. +..+.+|+.|++++|.+..+|.
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch
Confidence            34456677788887 55554443221      1221  2358999999999999987 8999999999999999999999


Q ss_pred             cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC-hhhhhcCccCCeEecccCCCChh
Q 028942           94 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMD  161 (201)
Q Consensus        94 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~  161 (201)
                      .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+. +..+..+++|+.|++++|+++..
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            9999999999999999999998 7889999999999999998884 44578999999999999998754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=3.8e-15  Score=114.26  Aligned_cols=156  Identities=20%  Similarity=0.319  Sum_probs=106.4

Q ss_pred             CCccEEecCCCcCcccC-----ccccCCC-CCcEEeccCCCCccC-chhhhCc-----CCCCEEEecCCcCcccchh---
Q 028942            7 INIQRLVLDDNHIERLP-----VNLGKLQ-SLKVMTLDGNRITSL-PDELGQL-----VRLERLSILGNMLTCLPET---   71 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~-----~~~~~l~-~L~~l~l~~~~l~~~-~~~~~~l-----~~L~~L~l~~~~~~~~~~~---   71 (201)
                      ++|++|++++|.+...+     ..+..++ +|+.|++++|.++.. +..+..+     +.|++|++++|.++..+..   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            44888888888887665     4567777 788888888888754 3344443     7788888888887765322   


Q ss_pred             --hhcC-CCCCEEEeeCCCCCcCcc-----cccC-CCCCceEEcCCCcCCc-----CChhhhCCC-ccceEEccCCcCCc
Q 028942           72 --IGSL-RNLVLLNVSNNKLKSLPE-----SIGS-CYSLEELQANDNLIGE-----LPASICNLI-HLKSLCLNNNNIGQ  136 (201)
Q Consensus        72 --~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~n~i~~-----~~~~~~~~~-~L~~L~l~~~~l~~  136 (201)
                        +... ++|++|++++|.+...+.     .+.. +.+|+.|++++|.++.     ++..+...+ .|+.|++++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              4444 688888888888775432     1233 3578888888888773     333445554 78888888888865


Q ss_pred             cChh----hhhcC-ccCCeEecccCCCChhh
Q 028942          137 IPAN----LLKDC-KALQNISLHNNPISMDQ  162 (201)
Q Consensus       137 ~~~~----~~~~~-~~L~~l~l~~n~l~~~~  162 (201)
                      ....    .+..+ ++|+.|++++|.++..+
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence            5542    33444 48888888888877643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=3.6e-14  Score=115.73  Aligned_cols=96  Identities=39%  Similarity=0.515  Sum_probs=46.6

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCC
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK   87 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~   87 (201)
                      +|+.|++++|.++.+|.   .+++|+.|++++|.++.+|.   .+++|++|++++|.++.+|.   .+.+|++|++++|.
T Consensus        62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~  132 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ  132 (622)
T ss_dssp             TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC
T ss_pred             CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC
Confidence            45555555555554444   23455555555555554443   34455555555555554433   23444455555554


Q ss_pred             CCcCcccccCCCCCceEEcCCCcCCcCC
Q 028942           88 LKSLPESIGSCYSLEELQANDNLIGELP  115 (201)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~  115 (201)
                      +..+|..   +++|+.|++++|.++.++
T Consensus       133 l~~lp~~---l~~L~~L~Ls~N~l~~l~  157 (622)
T 3g06_A          133 LTSLPVL---PPGLQELSVSDNQLASLP  157 (622)
T ss_dssp             CSCCCCC---CTTCCEEECCSSCCSCCC
T ss_pred             CCcCCCC---CCCCCEEECcCCcCCCcC
Confidence            4444332   244555555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=6e-14  Score=96.97  Aligned_cols=129  Identities=25%  Similarity=0.418  Sum_probs=110.4

Q ss_pred             CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeC
Q 028942            8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSN   85 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~   85 (201)
                      ..+.++++++.++.+|..+.  ++++.+++++|.++.++.. +..+++|++|++++|.++.+++. +..+.+|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35678999999999886554  6999999999999988654 57899999999999999988654 57899999999999


Q ss_pred             CCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccC
Q 028942           86 NKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIP  138 (201)
Q Consensus        86 ~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~  138 (201)
                      |.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+....
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99998865 467889999999999999988765 577899999999999985443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=8e-14  Score=95.82  Aligned_cols=106  Identities=27%  Similarity=0.402  Sum_probs=79.3

Q ss_pred             CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCC
Q 028942           55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNN  132 (201)
Q Consensus        55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~  132 (201)
                      .+.++++++.++.+|..+  ..++++|++++|.+..+ +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456677777777666544  25677777777777766 44567777888888888888777654 467788888888888


Q ss_pred             cCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          133 NIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       133 ~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .+..++...+..+++|+.|++.+|++.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            888888777788888888999888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=6.7e-15  Score=116.06  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=45.2

Q ss_pred             CCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcCC-hh----hhC-CCccceEEccCCcCC-----ccChh
Q 028942           77 NLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGELP-AS----ICN-LIHLKSLCLNNNNIG-----QIPAN  140 (201)
Q Consensus        77 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~-~~----~~~-~~~L~~L~l~~~~l~-----~~~~~  140 (201)
                      +|++|++++|.+..     ++..+..+++|+.|++++|.++... ..    +.. .+.|+.|++++|.++     .++. 
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-  392 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-  392 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-
Confidence            45555555554442     2233344566666666666555321 11    111 446666677666665     2332 


Q ss_pred             hhhcCccCCeEecccCCCChhhh
Q 028942          141 LLKDCKALQNISLHNNPISMDQF  163 (201)
Q Consensus       141 ~~~~~~~L~~l~l~~n~l~~~~~  163 (201)
                      .+..+++|++|++++|+++..+.
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~~~  415 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDAGI  415 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHH
T ss_pred             HHHhCCCccEEECCCCCCCHHHH
Confidence            24556677777777777665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=8e-16  Score=108.40  Aligned_cols=120  Identities=25%  Similarity=0.360  Sum_probs=106.2

Q ss_pred             CCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhC
Q 028942           41 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN  120 (201)
Q Consensus        41 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  120 (201)
                      .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.++.++ .+..
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            45566678899999999999999999988 888899999999999999999887777899999999999999887 5778


Q ss_pred             CCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCChhh
Q 028942          121 LIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       121 ~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      ++.|+.|++++|.+..++. ..+..+++|+++++.+|++.+..
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            8999999999999988765 45789999999999999987653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.1e-13  Score=95.46  Aligned_cols=105  Identities=27%  Similarity=0.386  Sum_probs=80.5

Q ss_pred             CEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCc
Q 028942           56 ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNN  133 (201)
Q Consensus        56 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~  133 (201)
                      +.++++++.+..+|..+.  .++++|++++|.+..+ |..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            566777777777766443  6777788888877766 44567778888888888888877654 4678888888888888


Q ss_pred             CCccChhhhhcCccCCeEecccCCCChhh
Q 028942          134 IGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       134 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +..++...+..+++|+.|++.+|++.+..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            88888777788888999999999888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.48  E-value=4.8e-14  Score=111.18  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=78.0

Q ss_pred             CccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccC-----chhh-hCcCCCCEEEecCCcCcc-----cchh
Q 028942            8 NIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSL-----PDEL-GQLVRLERLSILGNMLTC-----LPET   71 (201)
Q Consensus         8 ~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~-~~l~~L~~L~l~~~~~~~-----~~~~   71 (201)
                      +|++|++++|.++.     ++..+..+++|+.+++++|.++..     ...+ ..++.|++|++++|.++.     ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            44444444444442     233344455555555555554421     1111 134555555555555553     3444


Q ss_pred             hhcCCCCCEEEeeCCCCCcC-----cccc-cCCCCCceEEcCCCcCCc-----CChhhhCCCccceEEccCCcCCccChh
Q 028942           72 IGSLRNLVLLNVSNNKLKSL-----PESI-GSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPAN  140 (201)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~-----~~~~-~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~  140 (201)
                      +..+++|++|++++|.+...     ...+ ...++|+.|++++|.++.     ++..+..++.|+.|++++|.++.....
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            44556666666666655421     1111 122466666666666653     234455566777777777776443221


Q ss_pred             hhh-----cCccCCeEecccCCCCh
Q 028942          141 LLK-----DCKALQNISLHNNPISM  160 (201)
Q Consensus       141 ~~~-----~~~~L~~l~l~~n~l~~  160 (201)
                      .+.     .+++|+.|++++|.++.
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHHHcCCCCceEEEECCCCCCCh
Confidence            111     15577777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=1.5e-13  Score=104.09  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=57.3

Q ss_pred             CCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccc-eEEccCCcCCccChhhhhcCccCCeE
Q 028942           75 LRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        75 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      +.+|+.+++.+|.+..++. .|..+.+|+.+.+..| ++.++. ++..+.+|+ .+.+.. .+..++..+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            5677777777777776654 4666777777777776 665543 466677777 777766 6677777677777777777


Q ss_pred             ecccCCCC
Q 028942          152 SLHNNPIS  159 (201)
Q Consensus       152 ~l~~n~l~  159 (201)
                      ++.+|.+.
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            77666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=1.3e-12  Score=90.15  Aligned_cols=102  Identities=25%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNK   87 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~   87 (201)
                      +.++++++.+..+|..+.  ++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            345566666655555443  4556666666665554 33445555566666666555555443 3455555555555555


Q ss_pred             CCcCccc-ccCCCCCceEEcCCCcCCc
Q 028942           88 LKSLPES-IGSCYSLEELQANDNLIGE  113 (201)
Q Consensus        88 ~~~~~~~-~~~~~~L~~L~l~~n~i~~  113 (201)
                      +..++.. +..+++|+.|++++|++..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccc
Confidence            5555432 4445555555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=1.2e-12  Score=89.97  Aligned_cols=102  Identities=27%  Similarity=0.410  Sum_probs=60.7

Q ss_pred             ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCC
Q 028942            9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNN   86 (201)
Q Consensus         9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~   86 (201)
                      .+.++++++.++.+|..+.  ++++.|++++|.++.+ |..+..+++|++|++++|.++.+++. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3556666666666665442  5666666666666655 33455666666666666666665443 355566666666666


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCC
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIG  112 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~  112 (201)
                      .+..++. .+..+++|+.|++++|+++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665544 3455566666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.41  E-value=9.5e-14  Score=106.82  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=118.9

Q ss_pred             CCCccEEecCCCcCcc-----cCccccC-CCCCcEEeccCCCCccC-chh-hhCcCCCCEEEecCCcCcccc-----hhh
Q 028942            6 LINIQRLVLDDNHIER-----LPVNLGK-LQSLKVMTLDGNRITSL-PDE-LGQLVRLERLSILGNMLTCLP-----ETI   72 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~-----l~~~~~~-l~~L~~l~l~~~~l~~~-~~~-~~~l~~L~~L~l~~~~~~~~~-----~~~   72 (201)
                      ++.|+.|++++|.++.     +...+.. .++|+.|++++|.++.. ... ...+.+++.|++++|.++..+     ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578899999999874     2222332 36899999999998732 112 234567899999999987532     222


Q ss_pred             -hcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccCh--
Q 028942           73 -GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPA--  139 (201)
Q Consensus        73 -~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~--  139 (201)
                       ...++|++|++++|.+..     ++..+...++|+.|++++|.+++.     ...+...+.|+.|++++|.++....  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             245789999999998873     344557788999999999998743     3456677889999999999965432  


Q ss_pred             --hhhhcCccCCeEecccCCCChhhhccccC
Q 028942          140 --NLLKDCKALQNISLHNNPISMDQFQQMEG  168 (201)
Q Consensus       140 --~~~~~~~~L~~l~l~~n~l~~~~~~~l~~  168 (201)
                        ..+..+++|++|++++|.|+..+...+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence              23556789999999999998776654433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=8.2e-13  Score=100.85  Aligned_cols=148  Identities=20%  Similarity=0.266  Sum_probs=109.7

Q ss_pred             ccccCCCccEEecCCCcCc-ccC-ccccCCCCCcE-EeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccc--------
Q 028942            2 EISKLINIQRLVLDDNHIE-RLP-VNLGKLQSLKV-MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP--------   69 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~-l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~--------   69 (201)
                      .|.++++|++|++++|.+. .++ ..|..++++.. +.+.+|.+..++ ..+..+++|++|++++|.+..++        
T Consensus        49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~  128 (350)
T 4ay9_X           49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  128 (350)
T ss_dssp             SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS
T ss_pred             HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc
Confidence            4788999999999999875 454 35777877765 455667888774 45677888888888877665432        


Q ss_pred             -----------------h-hhhcC-CCCCEEEeeCCCCCcCcccccCCCCCceEEcCC-CcCCcCCh-hhhCCCccceEE
Q 028942           70 -----------------E-TIGSL-RNLVLLNVSNNKLKSLPESIGSCYSLEELQAND-NLIGELPA-SICNLIHLKSLC  128 (201)
Q Consensus        70 -----------------~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~-~~~~~~~L~~L~  128 (201)
                                       . .+..+ ..+++|++++|.++.++.......+++.+++.+ |.++.+|. .+..+++|+.|+
T Consensus       129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence                             1 12222 357788999999998887777788899999974 68888885 568889999999


Q ss_pred             ccCCcCCccChhhhhcCccCC
Q 028942          129 LNNNNIGQIPANLLKDCKALQ  149 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~L~  149 (201)
                      +++|.++.+|...+.++++|+
T Consensus       209 Ls~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          209 ISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEE
T ss_pred             cCCCCcCccChhhhccchHhh
Confidence            999999998876554444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=3.7e-12  Score=96.42  Aligned_cols=100  Identities=17%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             cCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCc-eEEcCCCcCCcCC-hhhhCCCccceE
Q 028942           52 LVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE-ELQANDNLIGELP-ASICNLIHLKSL  127 (201)
Q Consensus        52 l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~n~i~~~~-~~~~~~~~L~~L  127 (201)
                      +++|+++++++|.++.++. .|..+.+|+.+++..| +..++. .|..+.+|+ .+.+.. .++.++ .++..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6789999999999999965 5788999999999998 777754 678899999 999988 788775 578899999999


Q ss_pred             EccCCcCCccChhhhhcCccCCeEec
Q 028942          128 CLNNNNIGQIPANLLKDCKALQNISL  153 (201)
Q Consensus       128 ~l~~~~l~~~~~~~~~~~~~L~~l~l  153 (201)
                      ++.++.+..++..+|.+|++|+.+..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=9.6e-12  Score=94.70  Aligned_cols=99  Identities=20%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             EeccCC-CCccCchhhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCc
Q 028942           35 MTLDGN-RITSLPDELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL  110 (201)
Q Consensus        35 l~l~~~-~l~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~  110 (201)
                      ++.+++ .++.+|. +..+.+|+.|++++ |.++.+++ .|..+.+|+.|+|++|.+..+++ .+..+++|+.|++++|.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            344444 5555555 55555556666654 55555542 34555555555555555554432 34455555555555555


Q ss_pred             CCcCChhhhCCCccceEEccCCcC
Q 028942          111 IGELPASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus       111 i~~~~~~~~~~~~L~~L~l~~~~l  134 (201)
                      ++.+|........|+.|++.+|.+
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCc
Confidence            555443322222255555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=100.23  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             CCCccEEecCCCcCcc--cCccccCCCCCcEEeccCCCCccC-----chhh-hCcCCCCEEEecCCcCcc-----cchhh
Q 028942            6 LINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRITSL-----PDEL-GQLVRLERLSILGNMLTC-----LPETI   72 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~-~~l~~L~~L~l~~~~~~~-----~~~~~   72 (201)
                      ..+|++|++++|.++.  +......+.+|+.|++++|.++..     ...+ ...+.|++|++++|.++.     ++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3689999999999873  222334466899999999999732     2223 246789999999999874     34556


Q ss_pred             hcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccChhhh
Q 028942           73 GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~  142 (201)
                      ...++|++|++++|.+..     ++..+...+.|+.|++++|.++..     ...+...+.|++|++++|.++......+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            778899999999999873     345567778999999999999843     3445667899999999999966554434


Q ss_pred             hcCc-----cCCeEe--cccCCCChh
Q 028942          143 KDCK-----ALQNIS--LHNNPISMD  161 (201)
Q Consensus       143 ~~~~-----~L~~l~--l~~n~l~~~  161 (201)
                      ....     .++.+.  +..+.++..
T Consensus       260 ~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          260 RDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHCC------CEEECCCC----CHHH
T ss_pred             HHHhcCCCccchhhHhhhcCCccCHH
Confidence            3332     266666  666666644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=4.4e-11  Score=91.04  Aligned_cols=103  Identities=23%  Similarity=0.236  Sum_probs=88.6

Q ss_pred             cEEecCCC-cCcccCccccCCCCCcEEeccC-CCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeC
Q 028942           10 QRLVLDDN-HIERLPVNLGKLQSLKVMTLDG-NRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSN   85 (201)
Q Consensus        10 ~~L~l~~~-~l~~l~~~~~~l~~L~~l~l~~-~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~   85 (201)
                      ..++.+++ .++.+|. +..+.+|+.|++++ |.++.++ ..+..+++|+.|++++|.++.+++ .|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35788887 8999999 99999999999996 9999886 568899999999999999998855 678899999999999


Q ss_pred             CCCCcCcccccCCCCCceEEcCCCcCCc
Q 028942           86 NKLKSLPESIGSCYSLEELQANDNLIGE  113 (201)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~  113 (201)
                      |.+..+|........|+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999887755554459999999998873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=1.9e-11  Score=99.17  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             cCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCc-----cCchhhhCcCCCCEEEecCCcCcccchhhhc
Q 028942            5 KLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRIT-----SLPDELGQLVRLERLSILGNMLTCLPETIGS   74 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   74 (201)
                      +|++|++|++++|.+..     ++..+..+++|+.|+++++.++     .++..+..+++|++|++++|.+..++..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            56777778887776543     2233455677888888777765     2333445677788888888777777666667


Q ss_pred             CCCCCEEEeeCCCC---------------------------CcCcccccCCCCCceEEcCCCcCCc--CChhhhCCCccc
Q 028942           75 LRNLVLLNVSNNKL---------------------------KSLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLK  125 (201)
Q Consensus        75 ~~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~  125 (201)
                      +++|+.+++.....                           ..++..+..+++|+.|++++|.++.  +...+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            77777777753211                           1222333344555555555555432  112234555555


Q ss_pred             eEEccCCcC-CccChhhhhcCccCCeEecc
Q 028942          126 SLCLNNNNI-GQIPANLLKDCKALQNISLH  154 (201)
Q Consensus       126 ~L~l~~~~l-~~~~~~~~~~~~~L~~l~l~  154 (201)
                      .|+++ +.+ ......+...+++|++|++.
T Consensus       322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             EEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            55555 222 11122334556666777766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=3.9e-11  Score=97.39  Aligned_cols=161  Identities=17%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             ccCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecC----------------
Q 028942            4 SKLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG----------------   62 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~----------------   62 (201)
                      .++++|+.|++++|.+.     .++..+..+++|+.|++++|.+..++..+..++.|++|+++.                
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            35678888999888876     234445678889999988888777776667777777777753                


Q ss_pred             -----------CcCcccchhhhcCCCCCEEEeeCCCCCc--CcccccCCCCCceEEcCCCcCC--cCChhhhCCCccceE
Q 028942           63 -----------NMLTCLPETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIG--ELPASICNLIHLKSL  127 (201)
Q Consensus        63 -----------~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L  127 (201)
                                 +....+|..+..+++|++|++++|.+..  ++..+..+++|+.|++. +.++  .++.....+++|+.|
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence                       2222345556678899999999998662  23446789999999998 4444  334445678899999


Q ss_pred             EccC-----------CcCCccC-hhhhhcCccCCeEecccCCCChhhhcc
Q 028942          128 CLNN-----------NNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQQ  165 (201)
Q Consensus       128 ~l~~-----------~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~  165 (201)
                      ++++           +.++... ..+..++++|++|++..+.++...+..
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            9993           4554322 234677999999999889998765543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.10  E-value=1.4e-09  Score=84.40  Aligned_cols=152  Identities=12%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-----------
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-----------   69 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~-----------   69 (201)
                      .|.+|.+|+.+.+.+|.++.++.....+.+|+.+.+..+ +..+ ..+|..+.+|+.+.+..+ ++.++           
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~  252 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITT  252 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccE
Confidence            356677777777777766666444333466666666533 4444 234556666666666542 22222           


Q ss_pred             ------------hhhhcCCCCCEEEeeCCCCC-----cCc-ccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEcc
Q 028942           70 ------------ETIGSLRNLVLLNVSNNKLK-----SLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLN  130 (201)
Q Consensus        70 ------------~~~~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~  130 (201)
                                  ..|..+.+|+.+.+.++.+.     .++ ..+..|++|+.+.+.. .++.++ .++..+.+|+.+.+.
T Consensus       253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence                        23344445555555444332     222 2344555555555542 244443 234555566666663


Q ss_pred             CCcCCccChhhhhcCccCCeEecccCCC
Q 028942          131 NNNIGQIPANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus       131 ~~~l~~~~~~~~~~~~~L~~l~l~~n~l  158 (201)
                      . .+..+...+|.+| +|+.+.+.+|.+
T Consensus       332 ~-~l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          332 A-NVTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             T-TCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             c-cccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            2 3555555556666 666666665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.04  E-value=1.6e-09  Score=84.15  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=27.9

Q ss_pred             cccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEeeC
Q 028942           25 NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSN   85 (201)
Q Consensus        25 ~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~   85 (201)
                      .|..+.+|+.+.+..+.++.++.....+..|+.+.+..+ ++.++ ..|..+.+|+.+.+..
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            344455555555555555544433323444555555422 44442 2344455555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.03  E-value=6.8e-11  Score=95.95  Aligned_cols=56  Identities=21%  Similarity=0.333  Sum_probs=28.9

Q ss_pred             CCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCC-ccChhhhhcCccCCeEec
Q 028942           97 SCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISL  153 (201)
Q Consensus        97 ~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l  153 (201)
                      .+++|+.|++++|.++.  +...+..+++|+.|++++| +. .....+...+++|++|++
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            34566666666665442  2222445566666666655 31 111223344666676666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.99  E-value=2e-10  Score=93.15  Aligned_cols=17  Identities=18%  Similarity=0.401  Sum_probs=9.3

Q ss_pred             cCccCCeEecccCCCCh
Q 028942          144 DCKALQNISLHNNPISM  160 (201)
Q Consensus       144 ~~~~L~~l~l~~n~l~~  160 (201)
                      .+++|++|++.+|.++.
T Consensus       287 ~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHTTCCEEECTTCCCCH
T ss_pred             hhCCCCEEEccCCCCCH
Confidence            34555666665555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.89  E-value=1.9e-09  Score=74.82  Aligned_cols=115  Identities=16%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             hhhCcCCCCEEEecCC-cCcc-----cchhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCc---
Q 028942           48 ELGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE---  113 (201)
Q Consensus        48 ~~~~l~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~---  113 (201)
                      .+...+.|++|++++| .+..     +...+...++|++|++++|.+..     +...+...+.|+.|++++|.+++   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455666777777776 5552     23444555677777777777662     33444556678888888887763   


Q ss_pred             --CChhhhCCCccceEEc--cCCcCCccC----hhhhhcCccCCeEecccCCCChhh
Q 028942          114 --LPASICNLIHLKSLCL--NNNNIGQIP----ANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       114 --~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                        +...+...+.|++|++  ++|.++...    ...+...++|++|++++|.+...+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence              3445666778888888  778885432    234566788999999999887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=9.7e-09  Score=78.57  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             ccCCCccEEecCCCcCc----------ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCccc-chhh
Q 028942            4 SKLINIQRLVLDDNHIE----------RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETI   72 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~----------~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~   72 (201)
                      ..+++|+.|.+.+....          .+...+..+++|+.|.++++.-..++. + .+++|+.|++..|.+..- ...+
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            45678888888654321          244556778999999998874223333 3 378899999998876532 1223


Q ss_pred             h--cCCCCCEEEeeCC--C------CCcCcccc--cCCCCCceEEcCCCcCCcC-Chhh---hCCCccceEEccCCcCCc
Q 028942           73 G--SLRNLVLLNVSNN--K------LKSLPESI--GSCYSLEELQANDNLIGEL-PASI---CNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        73 ~--~~~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~L~l~~n~i~~~-~~~~---~~~~~L~~L~l~~~~l~~  136 (201)
                      .  .+++|+.|++..+  .      +..+...+  ..+++|+.|++.+|.++.- ...+   ..++.|++|+++.|.++.
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            2  6789999998632  1      11222222  3578999999999887632 1222   357789999999998855


Q ss_pred             cCh-hh---hhcCccCCeEecccCCCChhhhcccc
Q 028942          137 IPA-NL---LKDCKALQNISLHNNPISMDQFQQME  167 (201)
Q Consensus       137 ~~~-~~---~~~~~~L~~l~l~~n~l~~~~~~~l~  167 (201)
                      ... .+   +..+++|+.|++.+|.|+....+.+.
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            322 11   24578999999999999877655443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.87  E-value=5.2e-09  Score=72.65  Aligned_cols=114  Identities=21%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             CccccCCCCCcEEeccCC-CCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCCc-
Q 028942           23 PVNLGKLQSLKVMTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-   90 (201)
Q Consensus        23 ~~~~~~l~~L~~l~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-   90 (201)
                      ...+...+.|+.|++++| .+.     .+...+...+.|++|++++|.+..     +...+...++|++|++++|.+.. 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            334566789999999999 887     345566778899999999999874     34556677889999999999883 


Q ss_pred             ----CcccccCCCCCceEEc--CCCcCCc-----CChhhhCCCccceEEccCCcCCc
Q 028942           91 ----LPESIGSCYSLEELQA--NDNLIGE-----LPASICNLIHLKSLCLNNNNIGQ  136 (201)
Q Consensus        91 ----~~~~~~~~~~L~~L~l--~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~  136 (201)
                          +...+...+.|+.|++  ++|.++.     +...+...+.|+.|++++|.++.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                4556777889999999  8898874     34556677899999999998843

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=1e-07  Score=72.85  Aligned_cols=150  Identities=13%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhh--hCcCCCCEEEecCC--c------Ccccchhh
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDEL--GQLVRLERLSILGN--M------LTCLPETI   72 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~--~~l~~L~~L~l~~~--~------~~~~~~~~   72 (201)
                      ..+++|+.|.++++.-..++. +. +++|+.|.+..+.++.- ...+  ..+++|+.|+++.+  .      +..+.+.+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            456899999998873224444 33 88999999998887621 1223  36899999998532  1      21222222


Q ss_pred             --hcCCCCCEEEeeCCCCCc-Ccccc---cCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccChhh
Q 028942           73 --GSLRNLVLLNVSNNKLKS-LPESI---GSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPANL  141 (201)
Q Consensus        73 --~~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~  141 (201)
                        ..+++|++|++.+|.+.. .+..+   ..+++|+.|+++.|.++..     ...+..+++|+.|++++|.++......
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              246899999999998762 11111   3578999999999988752     333456789999999999886543332


Q ss_pred             hhc-CccCCeEecccCC
Q 028942          142 LKD-CKALQNISLHNNP  157 (201)
Q Consensus       142 ~~~-~~~L~~l~l~~n~  157 (201)
                      +.. +  ...++++.+.
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            332 3  3567887776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.34  E-value=9.7e-06  Score=62.19  Aligned_cols=127  Identities=23%  Similarity=0.352  Sum_probs=81.5

Q ss_pred             ccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCc
Q 028942           26 LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLE  102 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~  102 (201)
                      +..+..++.+.+..+ +..+ ..++..+..|+.+.+..+ ++.++ ..+..+.+++.+.+..+ +..++ ..+..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            344455555555433 2322 234556677777777654 55553 34556677777777543 44443 3566778888


Q ss_pred             eEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942          103 ELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  156 (201)
Q Consensus       103 ~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n  156 (201)
                      .+.+..+.++.++ .++..+.+|+.+.+.. .+..+...+|.+|.+|+.+.+..+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence            8888777777665 3567778888888853 377777777888888888877654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=3.4e-07  Score=66.93  Aligned_cols=61  Identities=21%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             CCCCceEEcCCCcCCcCC---hhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCC
Q 028942           98 CYSLEELQANDNLIGELP---ASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus        98 ~~~L~~L~l~~n~i~~~~---~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~  159 (201)
                      ++.|+.|++++|.++.++   ..+..+++|+.|+|++|.+..+.. ..+..+ +|++|++.+|++.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            445555555555554332   233445555555555555544321 112222 5555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.15  E-value=3.3e-05  Score=59.60  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             hhcCCCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCC
Q 028942           72 IGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ  149 (201)
Q Consensus        72 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  149 (201)
                      +..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.+. .++..+.+|+.+.+..+ +..+...+|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            445566666666543 44443 34566677777777543 55553 35666777777777554 6666666677777777


Q ss_pred             eEecccC
Q 028942          150 NISLHNN  156 (201)
Q Consensus       150 ~l~l~~n  156 (201)
                      .+.+..+
T Consensus       370 ~i~lp~~  376 (394)
T 4fs7_A          370 KVELPKR  376 (394)
T ss_dssp             EEEEEGG
T ss_pred             EEEECCC
Confidence            7777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.13  E-value=5.7e-05  Score=58.30  Aligned_cols=120  Identities=16%  Similarity=0.359  Sum_probs=82.5

Q ss_pred             hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCcc
Q 028942           48 ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL  124 (201)
Q Consensus        48 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L  124 (201)
                      ++..+..|+.+.+..+- ..+ ...+..+..|+.+.+.. .+..++. .|..+.+|+.+.+..+ ++.+. .++..|.+|
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            46667778888776543 334 24566778888888863 4555643 5677889999998764 66664 467788899


Q ss_pred             ceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhccccChhH
Q 028942          125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEE  171 (201)
Q Consensus       125 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~  171 (201)
                      +.+.+.. .+..+...+|.+|.+|+.+.+.++......+.....+..
T Consensus       337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~  382 (394)
T 4gt6_A          337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQN  382 (394)
T ss_dssp             CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--
T ss_pred             CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCE
Confidence            9999854 488888888999999999999887654444333334433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.11  E-value=1.8e-05  Score=61.13  Aligned_cols=58  Identities=3%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEec
Q 028942            2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSIL   61 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~   61 (201)
                      .|.+|.+|+.+.+.. .++.+ ..+|..+.+|+.+.+..+ ++.++ .++..+..|+.+.+.
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            356666777776653 35555 334666677777776543 44442 334555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=4.9e-06  Score=60.77  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             EecCCCcCcccCc----cccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcccchhhhcCC--CCCEEE
Q 028942           12 LVLDDNHIERLPV----NLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLR--NLVLLN   82 (201)
Q Consensus        12 L~l~~~~l~~l~~----~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~   82 (201)
                      ++++.|....++.    ....+++|+.|++++|.++.++   ..+..+++|+.|++++|.++.+ ..+..+.  +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence            4556664333322    2356789999999999988653   4566899999999999999876 2233333  899999


Q ss_pred             eeCCCCCc-Cc-------ccccCCCCCceEEc
Q 028942           83 VSNNKLKS-LP-------ESIGSCYSLEELQA  106 (201)
Q Consensus        83 l~~~~~~~-~~-------~~~~~~~~L~~L~l  106 (201)
                      +.+|.+.. +|       ..+..+++|+.|+-
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            99998863 33       23567788888873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.07  E-value=4.6e-05  Score=58.42  Aligned_cols=140  Identities=15%  Similarity=0.231  Sum_probs=102.4

Q ss_pred             ccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCE
Q 028942            4 SKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVL   80 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~   80 (201)
                      ..+..++.+.+..+ +..+ ...|..+..|+.+.+..+ ++.+ ..++..+..++.+.+..+ +..++. .|..+.+|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34555666655433 3333 445777889999998765 5555 345678889999998754 566643 5678899999


Q ss_pred             EEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccC
Q 028942           81 LNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL  148 (201)
Q Consensus        81 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L  148 (201)
                      +.+..+.+..++. .+..+.+|+.+.+..+ ++.+. .++..|.+|+.+.+..+ +..+...+|.+|..+
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            9999888887754 6788999999999754 67665 46788999999988544 778888788888643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.01  E-value=0.00011  Score=56.59  Aligned_cols=96  Identities=22%  Similarity=0.405  Sum_probs=59.1

Q ss_pred             hcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCe
Q 028942           73 GSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN  150 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  150 (201)
                      ..+..|+.+.+..+.. .+ ...+..+..|+.+.+.. .++.++ .++..+.+|+.+.+.. .+..+...+|.+|.+|+.
T Consensus       262 ~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred             eecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence            3444555555543322 22 22345566666666643 355554 3567788899888854 477788888999999999


Q ss_pred             EecccC--CCChhhhccccChhH
Q 028942          151 ISLHNN--PISMDQFQQMEGFEE  171 (201)
Q Consensus       151 l~l~~n--~l~~~~~~~l~~~~~  171 (201)
                      +.+..+  .|...++.....+..
T Consensus       339 i~ip~sv~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          339 IAIPSSVTKIPESAFSNCTALNN  361 (394)
T ss_dssp             EEECTTCCBCCGGGGTTCTTCCE
T ss_pred             EEECcccCEEhHhHhhCCCCCCE
Confidence            998765  345555655555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.01  E-value=1.3e-05  Score=52.12  Aligned_cols=59  Identities=25%  Similarity=0.388  Sum_probs=47.0

Q ss_pred             ceEEcCCCcCC--cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          102 EELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       102 ~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      ..++-+++.++  .+|..+  ..+++.|+|++|.|+.++..+|..+++|+.|+|.+|++.|+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            35666777777  777533  346889999999999998888888999999999999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=7.6e-06  Score=55.84  Aligned_cols=84  Identities=8%  Similarity=0.127  Sum_probs=40.7

Q ss_pred             CCCEEEeeCCCCCcC-cccccCCCCCceEEcCCC-cCCcCC-hhhhC----CCccceEEccCCc-CCccChhhhhcCccC
Q 028942           77 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDN-LIGELP-ASICN----LIHLKSLCLNNNN-IGQIPANLLKDCKAL  148 (201)
Q Consensus        77 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n-~i~~~~-~~~~~----~~~L~~L~l~~~~-l~~~~~~~~~~~~~L  148 (201)
                      .|+.|+++++.++.. -..+..+++|+.|++++| .+++-. ..+..    ++.|++|++++|. |+...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            355555555544321 122345555666666555 244221 12222    2356666666664 444333334556666


Q ss_pred             CeEecccCC-CCh
Q 028942          149 QNISLHNNP-ISM  160 (201)
Q Consensus       149 ~~l~l~~n~-l~~  160 (201)
                      ++|++.+++ ++.
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            666666653 443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.91  E-value=3.3e-05  Score=53.67  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             hhCcCCCCEEEecCC-cCcc-----cchhhhcCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCCc----
Q 028942           49 LGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE----  113 (201)
Q Consensus        49 ~~~l~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~----  113 (201)
                      +..-+.|++|+++++ .+..     +...+..-..|+.|+|++|.+.     .+...+...+.|+.|+++.|.|+.    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566788888774 5542     3345555677888888888877     234455667788888888888873    


Q ss_pred             -CChhhhCCCccceEEccCC---cCCcc----ChhhhhcCccCCeEecccCCCC
Q 028942          114 -LPASICNLIHLKSLCLNNN---NIGQI----PANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       114 -~~~~~~~~~~L~~L~l~~~---~l~~~----~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                       +-..+...+.|+.|+++++   .++..    -..++...+.|..|++..+.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             3344566677999999765   44321    1234667788999999877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.83  E-value=7.7e-05  Score=51.83  Aligned_cols=108  Identities=22%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             cCCCCCcEEeccCC-CCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCC-----c
Q 028942           27 GKLQSLKVMTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----S   90 (201)
Q Consensus        27 ~~l~~L~~l~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~   90 (201)
                      ..-+.|+.|+++++ .+.     .+..++.....|+.|++++|.+..     +...+..-..|++|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34467888888875 665     244556666778888888888763     3445556677888888888877     2


Q ss_pred             CcccccCCCCCceEEcCCCc---CC-----cCChhhhCCCccceEEccCCcC
Q 028942           91 LPESIGSCYSLEELQANDNL---IG-----ELPASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~---i~-----~~~~~~~~~~~L~~L~l~~~~l  134 (201)
                      +...+.....|+.|+++++.   +.     .+...+...+.|..|+++.+.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            34455666778888887553   33     1233455667788888876655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.51  E-value=4.9e-05  Score=51.82  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CcccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCc-CCccChhhhhc----CccCCeEecccCC-CChhhh
Q 028942           91 LPESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN-IGQIPANLLKD----CKALQNISLHNNP-ISMDQF  163 (201)
Q Consensus        91 ~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~----~~~L~~l~l~~n~-l~~~~~  163 (201)
                      +|........|+.+++++|.+++.. ..+..++.|+.|++++|. ++...-..+..    +++|++|+++++. |++.++
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            4443334457999999999988542 346789999999999996 55444333444    3589999999985 998887


Q ss_pred             ccccChhHHH
Q 028942          164 QQMEGFEEFE  173 (201)
Q Consensus       164 ~~l~~~~~l~  173 (201)
                      ..+..++.|+
T Consensus       133 ~~L~~~~~L~  142 (176)
T 3e4g_A          133 IALHHFRNLK  142 (176)
T ss_dssp             HHGGGCTTCC
T ss_pred             HHHhcCCCCC
Confidence            7765544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.003  Score=40.79  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             EEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcC
Q 028942           11 RLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML   65 (201)
Q Consensus        11 ~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~   65 (201)
                      .++-+++.++  .+|..+.  .+++.|++++|.++.++.. +..++.|+.|++.+|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3444444444  4443322  2344455555555444332 23344444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 34/170 (20%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           N+  L L+ N ++ +   L  L +L  + L  N+I++L   L  L +L  L +  N ++ 
Sbjct: 220 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISN 277

Query: 68  LPETIG---------------------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQA 106
           +    G                     +L+NL  L +  N +  +   + S   L+ L  
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 336

Query: 107 NDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
            +N + ++  S+ NL ++  L   +N I  +    L +   +  + L++ 
Sbjct: 337 ANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
             ++KL N++ L+  +N I  +   LG L +L  ++L+GN++  +   L  L  L  L +
Sbjct: 191 SVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 248

Query: 61  LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120
             N ++ L   +  L  L  L +  N++ ++    G   +       +    E  + I N
Sbjct: 249 ANNQISNLAP-LSGLTKLTELKLGANQISNISPLAG--LTALTNLELNENQLEDISPISN 305

Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
           L +L  L L  NNI  I    +     LQ +   NN +S
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 342

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
            +S L  +QRL   +N +  +  +L  L ++  ++   N+I+ L   L  L R+ +L + 
Sbjct: 324 PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 381

Query: 62  GN 63
             
Sbjct: 382 DQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 6e-11
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 8   NIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNML 65
           +   L L +N I  +       L++L  + L  N+I+ + P     LV+LERL +  N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 66  TCLPETIGSLRNLVLLNVSNNKLKSLPESI----GSCYSLEELQANDNLIGELPASICNL 121
             LPE +   + L  L V  N++  + +S+         +E         G    +   +
Sbjct: 92  KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 169
             L  + + + NI  IP  L     +L  + L  N I+      ++G 
Sbjct: 150 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGL 194

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 9e-10
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 17  NHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIGSL 75
                       ++ L  + +    IT++P   G    L  L + GN +T     ++  L
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 76  RNLVLLNVSNNKLKSLPESIGSCYS-LEELQANDNLIGELPASICNLIHLKSLCLNNNNI 134
            NL  L +S N + ++     +    L EL  N+N + ++P  + +  +++ + L+NNNI
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 135 GQIPAN------LLKDCKALQNISLHNNPISMDQFQQ 165
             I +N            +   +SL +NP+   + Q 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQ-ANDNLIGELPASIC 119
              L  +P+ +    +  LL++ NNK+  + +    +  +L  L   N+ +    P +  
Sbjct: 19  DLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 120 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKK 179
            L+ L+ L L+ N + ++P  + K  + L+        +    F  +      E      
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 180 FDKQIDSNVMISSKGLN 196
               I++      K L+
Sbjct: 137 KSSGIENGAFQGMKKLS 153

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 1e-10
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 29  LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 88
             SL+ + +  N++  LP       RLERL    N L  +PE   +L+    L+V  N L
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPL 336

Query: 89  KSLPESIGSCYSLEELQAN 107
           +  P+      S+E+L+ N
Sbjct: 337 REFPDIPE---SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 6e-10
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 1   MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSI 60
                  +++ L + +N +  LP    +L+ L       N +  +P+       L++L +
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPELPQN---LKQLHV 331

Query: 61  LGNMLTCLPETIGSLRNL 78
             N L   P+   S+ +L
Sbjct: 332 EYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 1e-08
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 51  QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL 110
               LE L++  N L  LP     L  L+    S N L  +PE      +L++L    N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERLIA---SFNHLAEVPELPQ---NLKQLHVEYNP 335

Query: 111 IGELPASICNLIHLKSLCLNN 131
           + E P    ++  L+   +N+
Sbjct: 336 LREFPDIPESVEDLR---MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 4e-08
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 75  LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI 134
             +L  LNVSNNKL  LP        LE L A+ N + E+P    NL   K L +  N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNL---KQLHVEYNPL 336

Query: 135 GQIPANLLKDCKALQNISLHN 155
            + P       ++++++ +++
Sbjct: 337 REFPDIP----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 9e-07
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 76  RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG 135
           R    L ++N  L SLPE       LE L A+ N + ELP    +L  L     N   + 
Sbjct: 38  RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 136 QIPANLLKDCKALQNISLHNNPISMDQFQQM 166
            +P  L     +   +       +    + +
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKII 125

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 98  CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
             SLEEL  ++N + ELPA       L+ L  + N++ ++P       + L+ + +  NP
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELP----QNLKQLHVEYNP 335

Query: 158 IS 159
           + 
Sbjct: 336 LR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 31  SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS 90
               + L+   ++SLP+    L   E L    N LT LPE   SL++L++ N +   L  
Sbjct: 39  QAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 91  LPESIGSCY 99
           LP  +    
Sbjct: 96  LPPLLEYLG 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 55  LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 114
              L +    L+ LPE    L +L     S N L  LPE      SL+ L  ++N +  L
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQ---SLKSLLVDNNNLKAL 93

Query: 115 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 166
                 L +L         + ++  +       + N SL   P      + +
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 8   NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
               L L++  +  LP     L+SL       N +T LP+       L+ L +  N L  
Sbjct: 39  QAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQS---LKSLLVDNNNLKA 92

Query: 68  LPETIGSL 75
           L +    L
Sbjct: 93  LSDLPPLL 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 58  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117
           L +    LT L   +  L  +  L++S+N+L++LP ++ +   LE LQA+DN +  +   
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 60

Query: 118 ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS 159
           + NL  L+ L L NN + Q  A   L  C  L  ++L  N + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 25/116 (21%)

Query: 10  QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRL-------------- 55
           + L L    +  L  +L +L  +  + L  NR+ +LP  L  L  L              
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 56  --------ERLSILGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSL 101
                   + L +  N L      + + S   LVLLN+  N L            +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 21/146 (14%)

Query: 14  LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73
           L    +E+L + + K        LD   + S PD L        L+   +M   L     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 74  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 133
           ++  L+ LN+SNN+L  L +                    + + +    +LK L L+ N 
Sbjct: 63  NIPELLSLNLSNNRLYRLDD--------------------MSSIVQKAPNLKILNLSGNE 102

Query: 134 IGQIPANLLKDCKALQNISLHNNPIS 159
           +             L+ + L  N +S
Sbjct: 103 LKSERELDKIKGLKLEELWLDGNSLS 128

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 14  LDDNHIE-RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
           L +N I   LP  L +L+ L  + +  N +     + G L R +  +   N   C
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 34  VMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 88
            + L  NRI  +LP  L QL  L  L++  N L       G+L+   +   +NNK 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 107 NDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNP 157
           N+ + G LP  +  L  L SL ++ NN+ G+IP     + +     +  NN 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 63  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPASIC 119
            +   LP+ +  L+ L  LNVS N L       G+    +    AN+  +   P   C
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 84  SNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNN 133
           +N    +LP+ +     L  L  + N L GE+P    NL         NN 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-06
 Identities = 39/206 (18%), Positives = 66/206 (32%), Gaps = 54/206 (26%)

Query: 2   EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSI 60
           E+SK+ +   +  D  ++  LP +L K     ++ L  N + +     L    RL +L+ 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN- 61

Query: 61  LGNMLTCLPETIGSLRNLVLLNV------------------------------------- 83
           L        +  G+L  L  L++                                     
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 84  ----------SNNKLKSLPESIGSCYSLEELQAND--NLIGELPASICNLIHLKSLCLNN 131
                       N+LK+LP  + +     E  +    NL       +  L +L +L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 132 NNIGQIPANLLKDCKALQNISLHNNP 157
           N++  IP         L    LH NP
Sbjct: 182 NSLYTIPKGFF-GSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 23  PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82
              L  L++L  + L  N + ++P        L    + GN   C  E I   R  +  N
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE-ILYFRRWLQDN 223

Query: 83  VSNNKL-KSLPESIGSCYSLEELQ---ANDNLIGELPASIC 119
             N  + K   +      ++  +Q   ++   + + P   C
Sbjct: 224 AENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGC 264

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 76  RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLN 130
           ++L L  ++    KS+   +    S++E+  + N IG      L  +I +   L+    +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 131 NNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF 172
           +   G++   + +  + L    L    +   +          
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 30  QSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT-----CLPETIGSLRNLVLLNVS 84
           +SLK+  +      S+   L +   ++ + + GN +       L E I S ++L +   S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 85  NNKLKSLPESIGSCYS 100
           +     + + I     
Sbjct: 68  DIFTGRVKDEIPEALR 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 10/97 (10%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 77  NLVLLNVSNNKL--KSLPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCL 129
           ++  L++   +L      E +      + ++ +D  + E     + +++     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 130 NNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 166
            +N +G +  + +       +  +    +        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 97  SCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIG-----QIPANLLKDCK 146
               L  L   D  + +     L A++     L+ L L+NN +G     Q+  ++ +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 147 ALQNISLHNNPISMDQFQQMEGFEE 171
            L+ + L++   S +   +++  E+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 77  NLVLLNVSNNKL-----KSLPESIGSCYSLEELQANDNLIGE------LPASICNLIHLK 125
            L +L +++  +      SL  ++ + +SL EL  ++N +G+      + +       L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 126 SLCLNNNNIGQIPANLLKD 144
            L L +    +   + L+ 
Sbjct: 430 QLVLYDIYWSEEMEDRLQA 448

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 8   NIQRLVLDDNHIERLPV----NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN 63
             QR+ L  N I  +P         L  L + +    RI +       L+    LS    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 64  MLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSC-YSLEELQANDN-LIGELPASICNL 121
           + +  P T   L  L  L++    L+ L   +     +L+ L   DN L      +  +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 122 IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
            +L  L L+ N I  +P    +   +L  + LH N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 3   ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
              L  ++ L L DN I  +       L SL  + L  N              L + S+ 
Sbjct: 98  FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN 157

Query: 62  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSC 98
           G    C       +R++ + ++ +++ K   E+   C
Sbjct: 158 GGAARC--GAPSKVRDVQIKDLPHSEFKCSSENSEGC 192

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
                     L ++   I  +P+  L++ K L+  S +N 
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 14  LDDNHIERLP--VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
           L    IE+     N  + + L    L G +I  + +    L + + +    N +  L   
Sbjct: 3   LTAELIEQAAQYTNAVRDREL---DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G 58

Query: 72  IGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLC 128
              LR L  L V+NN++         +   L EL   +N + EL     + +L  L  LC
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 129 LNNNNIGQIPANLLKDCKALQNI-SLHNNPISMDQFQQME 167
           +  N +       L     +  +  L    + + + Q+ E
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAE 158

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 61  LGNMLTCLPETIG------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 114
           LG+    +P  I       +    +  N+    +     +     S++++ AN++ I  +
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV 61

Query: 115 PASICNLIHLKSLCLNNNNI 134
              I  L ++  L LN N +
Sbjct: 62  QG-IQYLPNVTKLFLNGNKL 80

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 95  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 154
           + +   L  L+A+DN I ++   + +L +L  + L NN I  +    L +   L  ++L 
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

Query: 155 N 155
           N
Sbjct: 226 N 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-19  Score=132.19  Aligned_cols=153  Identities=30%  Similarity=0.371  Sum_probs=105.8

Q ss_pred             CccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe---
Q 028942            8 NIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV---   83 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l---   83 (201)
                      ++++|++++|.++.++ ..|..+++|+.|++++|.++.++. +..+++|++|++++|+++..+..+..+++|+.+++   
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            5666777777666664 346666667777777666665542 34566666666666666554444444445555555   


Q ss_pred             ---------------------eCCCCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChh
Q 028942           84 ---------------------SNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPAN  140 (201)
Q Consensus        84 ---------------------~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~  140 (201)
                                           .+|.+..++. .+..++.++.+++++|.++.++. .+..+++|++|++++|.++.+|..
T Consensus       111 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChh
Confidence                                 4444444433 33456788888999988887764 467789999999999999999887


Q ss_pred             hhhcCccCCeEecccCCCChhh
Q 028942          141 LLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       141 ~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      + ..+++|+.|++.+|++.|++
T Consensus       191 ~-~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         191 F-FGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             T-TTTCCCSEEECCSCCBCCSG
T ss_pred             H-CCCCCCCEEEecCCCCCCCc
Confidence            5 46888999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.2e-19  Score=129.06  Aligned_cols=153  Identities=28%  Similarity=0.366  Sum_probs=123.1

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      .+...+.+++.+++.++.+|..+.  ++++.|++++|.++.++ ..+..+++|++|++++|.++.++. +..+++|++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            344566678999999999987764  58999999999999886 457899999999999999998864 46789999999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCc------------------------CCh-hhhCCCccceEEccCCcCCcc
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGE------------------------LPA-SICNLIHLKSLCLNNNNIGQI  137 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~------------------------~~~-~~~~~~~L~~L~l~~~~l~~~  137 (201)
                      +++|.+...+..+..+++|+.++++++.+..                        ++. .+..++.++.+++++|.+..+
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            9999998777667777777777777665443                        322 234466788888888888888


Q ss_pred             ChhhhhcCccCCeEecccCCCC
Q 028942          138 PANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       138 ~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +...+..+++|++|++++|.|+
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccccccccccceeecccCCCc
Confidence            8777888899999999999887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.3e-18  Score=119.94  Aligned_cols=149  Identities=20%  Similarity=0.368  Sum_probs=130.7

Q ss_pred             cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942            5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS   84 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   84 (201)
                      .+.+++.|+++++.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..+++ +..++.|+.++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-ccccccccccccc
Confidence            4678999999999999875 47789999999999999998864 8899999999999999888854 7889999999999


Q ss_pred             CCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           85 NNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++....++ .+..+++|+.+++++|.++.++ .+..++.++.|++.+|.+..++.  +.++++|+.|++++|+++.
T Consensus       115 ~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         115 NNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCC
Confidence            99887664 3677899999999999998876 47788999999999999988764  7899999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.9e-17  Score=116.12  Aligned_cols=149  Identities=26%  Similarity=0.389  Sum_probs=127.3

Q ss_pred             cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942            5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS   84 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   84 (201)
                      .+.++++|+++++.+..++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.++ .+..+++|+.+++.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccc
Confidence            36788999999999988764 778999999999999999876 4678999999999999999886 57888999999999


Q ss_pred             CCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           85 NNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +|.+..++ .+..++.++.+++++|.++..+ .+..+++|+.+++++|.+..++.  +.++++|+.|++++|.++.
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC
Confidence            99887764 4677889999999999988764 45678899999999999987764  6889999999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.3e-17  Score=114.78  Aligned_cols=143  Identities=23%  Similarity=0.424  Sum_probs=125.1

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      .+..+++|++|++++|.++.+++ +..+++|+.+++++|.+..++ .+..++.|+.++++++....++ .+..+++|+.+
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L  133 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRL  133 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc-ccchhhhhHHh
Confidence            46788999999999999998875 889999999999999998875 4788999999999999887764 47788999999


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI  151 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l  151 (201)
                      ++++|.+..++ .+..+++++.+++.+|.++.++. +..+++|+.|++++|.++.++.  +.++++|+.|
T Consensus       134 ~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             hhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCcc--ccCCCCCCcC
Confidence            99999988775 47889999999999999998864 7889999999999999988763  6788888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2e-17  Score=116.02  Aligned_cols=147  Identities=28%  Similarity=0.430  Sum_probs=121.5

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL   81 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   81 (201)
                      .+..+++|++|++++|.++.+++ +..+++|+.+++++|.++.++ .+..+++|+.|++.+|.+..++ .+..++.++.+
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l  139 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL  139 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred             hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccccccccccccc-ccccccccccc
Confidence            35678899999999999888764 677899999999999998876 5778889999999999887764 57778889999


Q ss_pred             EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942           82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  155 (201)
Q Consensus        82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~  155 (201)
                      ++.+|.+...+ .+..+++|+.+++++|.++.++. +..+++|+.|++++|.++.++.  +.++++|+.|++.+
T Consensus       140 ~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         140 YLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh--hcCCCCCCEEEccC
Confidence            99998887653 35678889999999999888764 6788899999999999988763  68889999998863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-17  Score=121.01  Aligned_cols=137  Identities=29%  Similarity=0.422  Sum_probs=91.1

Q ss_pred             ccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCc
Q 028942           26 LGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLE  102 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~  102 (201)
                      |..+++|+.+++++|.+..++. .+.....|+.+++++|.++.+++ .+..+.+++.|++++|.+..++ ..+..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            3334445555555544443322 23334445555555555555543 3455666777777777766654 3455667777


Q ss_pred             eEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          103 ELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       103 ~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .+++++|.++.+ |..+..++++++|++++|.+..++..++..+++|+++++++|++.|+.
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            777777777655 456777888899999999998888888889999999999999998875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=111.36  Aligned_cols=132  Identities=19%  Similarity=0.248  Sum_probs=81.0

Q ss_pred             ccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCccc-ccCCCCCceE
Q 028942           26 LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEEL  104 (201)
Q Consensus        26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L  104 (201)
                      +.+...++.|++++|.++.++..+..++.|+.|++++|.++.+ +++..+++|++|++++|.+..++.. +..+++|+.|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3445556666666666665554445556666666666666655 2355566666666666666665443 3456666777


Q ss_pred             EcCCCcCCcCCh--hhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecccCCCCh
Q 028942          105 QANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       105 ~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++++|.++.++.  .+..+++|+++++++|++...+.   .++..+++|+.||  +.+++.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            777766665543  45667777777777777766553   3567778888766  334543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5e-17  Score=119.01  Aligned_cols=153  Identities=25%  Similarity=0.370  Sum_probs=121.3

Q ss_pred             CccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC--------------------------chhhhCcCCCCEEEe
Q 028942            8 NIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL--------------------------PDELGQLVRLERLSI   60 (201)
Q Consensus         8 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~--------------------------~~~~~~l~~L~~L~l   60 (201)
                      .+++|++++|.|+.+|+ .|..+++|+.++++++.+..+                          +..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            57889999999888865 588888899999888776522                          234566778888888


Q ss_pred             cCCcCcccc-hhhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCcc
Q 028942           61 LGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQI  137 (201)
Q Consensus        61 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~  137 (201)
                      ++|.+..++ ..+....+|+++++.+|.++.++. .+..++.|+.|++++|.++.++ ..+..+++|+.+++++|.+..+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            888887664 345667788899999998888754 5667888999999999888775 4567788899999999999877


Q ss_pred             ChhhhhcCccCCeEecccCCCCh
Q 028942          138 PANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       138 ~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ....+.++++|++|++.+|.+..
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ChhHhhhhhhccccccccccccc
Confidence            77778888999999999998774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.3e-16  Score=102.42  Aligned_cols=116  Identities=27%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             EEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCc
Q 028942           34 VMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE  113 (201)
Q Consensus        34 ~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  113 (201)
                      .|++++|.++.++ .+..+..|++|++++|.++.+|+.+..+++|++|++++|.++.++. +..+++|+.+++++|.++.
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccCC
Confidence            3444444444443 2344445555555555555554445555555555555555555432 4455555555555555554


Q ss_pred             CCh--hhhCCCccceEEccCCcCCcc---ChhhhhcCccCCeE
Q 028942          114 LPA--SICNLIHLKSLCLNNNNIGQI---PANLLKDCKALQNI  151 (201)
Q Consensus       114 ~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~l  151 (201)
                      ++.  .+..++.|+.+++++|++...   ...+...+++|+.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            432  345555666666666655322   23444555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=6.3e-16  Score=109.47  Aligned_cols=151  Identities=24%  Similarity=0.379  Sum_probs=110.7

Q ss_pred             ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942            4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV   83 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   83 (201)
                      ..+.+|++|.+.++.++.++ .+..+++|+.+++++|.+..++ .+..++.++++++++|.++.++ .+..+++|+++.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccc
Confidence            44677888888888888774 4777888888888888887664 3677788888888888777664 4566777777777


Q ss_pred             eCCCCCcCc---------------------ccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhh
Q 028942           84 SNNKLKSLP---------------------ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLL  142 (201)
Q Consensus        84 ~~~~~~~~~---------------------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  142 (201)
                      +++....++                     ..+..+++|+.+++++|.++..+. +..+++|+.|++++|.++.++.  +
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~--l  191 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--L  191 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh--h
Confidence            766543211                     123455678888888887776544 6678888888888888877754  6


Q ss_pred             hcCccCCeEecccCCCCh
Q 028942          143 KDCKALQNISLHNNPISM  160 (201)
Q Consensus       143 ~~~~~L~~l~l~~n~l~~  160 (201)
                      .++++|++|++++|.++.
T Consensus       192 ~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGCTTCCEEECTTSCCCB
T ss_pred             cCCCCCCEEECcCCcCCC
Confidence            788888888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.3e-17  Score=108.20  Aligned_cols=126  Identities=21%  Similarity=0.229  Sum_probs=99.9

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhh-hcCCCCCE
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVL   80 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~   80 (201)
                      +|.++.++++|++++|.|+.++..+..+++|+.+++++|.++.++ .+..+++|++|++++|.++.+++.+ ..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            456777888888888888888777777888888888888888774 4677888888888888888886544 56888888


Q ss_pred             EEeeCCCCCcCcc--cccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEE
Q 028942           81 LNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLC  128 (201)
Q Consensus        81 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~  128 (201)
                      |++++|.+..++.  .+..+++|+.+++.+|+++..+.    .+..+++|++||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888887653  46778888888888888887763    366678888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=9.2e-16  Score=113.19  Aligned_cols=66  Identities=38%  Similarity=0.495  Sum_probs=46.9

Q ss_pred             cccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           94 SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        94 ~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      .+..++.++.|++++|.++.++ ..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.|+.
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCC
T ss_pred             Hhhccccccccccccccccccccccccccccceeeecccccccccccc-cccccCCCEEECCCCccCc
Confidence            3455566777777777777663 4566677788888888888777654 5677788888888877763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.1e-16  Score=100.10  Aligned_cols=116  Identities=26%  Similarity=0.284  Sum_probs=99.7

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK   89 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   89 (201)
                      +.|++++|.++.++. +..+++|+.+++++|.++.+|..+..+++|+.|++++|.++.++ ++..+++|+.+++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            579999999998874 88999999999999999999988999999999999999999985 5889999999999999999


Q ss_pred             cCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceE
Q 028942           90 SLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSL  127 (201)
Q Consensus        90 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L  127 (201)
                      .++  ..+..+++|+.+++++|+++..+.    ....+++++.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            775  357889999999999999885542    23345666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=6.8e-16  Score=113.91  Aligned_cols=168  Identities=25%  Similarity=0.403  Sum_probs=116.3

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccch--------------
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE--------------   70 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--------------   70 (201)
                      +.++.|++++|.++.+|+ .|..+++|+.++++++.+..+ |..+..++.|++|++++|+++.+|.              
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            567788888888888765 577888888888888888766 4457777888888887776654331              


Q ss_pred             ----------------------------------hhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcC-C
Q 028942           71 ----------------------------------TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL-P  115 (201)
Q Consensus        71 ----------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~  115 (201)
                                                        .+..+++|+.+++.+|.+..++...  .++++.|++.+|..+.. +
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECT
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCCh
Confidence                                              1233445555555555555554332  45667777777666533 4


Q ss_pred             hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh--hhhccccChhHHHHHH
Q 028942          116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM--DQFQQMEGFEEFEARR  176 (201)
Q Consensus       116 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~l~~~~~l~~~~  176 (201)
                      ..+..++.++.|++++|.+..++...+.++++|++|++++|.++.  .++..++.++.|...+
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred             hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCC
Confidence            456777889999999999988887778899999999999998873  3444555555554433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.2e-15  Score=115.59  Aligned_cols=151  Identities=25%  Similarity=0.407  Sum_probs=125.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++|+.|++++|.++.++ .+..+++++.+++.+|.+..++. +..+++|++++++++.++.+++ +..+..++.+.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~  291 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLE  291 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc-ccccccccccc
Confidence            456788999999999988875 57788999999999999988753 6788999999999999887754 66778888999


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +..|.+..++ .+..++.++.+++++|.++.++. +..+++|+.|++++|.++.++.  +.++++|++|++++|.++.
T Consensus       292 ~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         292 LNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCB
T ss_pred             cccccccccc-ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCCcCCC
Confidence            9888887664 36778888999999998888754 6778889999999998887763  6788999999999998874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=1.4e-16  Score=118.16  Aligned_cols=158  Identities=25%  Similarity=0.368  Sum_probs=97.2

Q ss_pred             ccccCCCccEEecCC-CcCc-ccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcc-cchhhhcCCC
Q 028942            2 EISKLINIQRLVLDD-NHIE-RLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTC-LPETIGSLRN   77 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~   77 (201)
                      ++.++++|++|++++ |.+. .+|..+.++++|+.|++++|.+..+ +..+..+..|+.+++++|.+.. +|..+..++.
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            456777777777765 5565 5677777777777777777766643 3334455556666665555443 3555666666


Q ss_pred             CCEEEeeCCCCC-cCcccccCC------------------------------------------------CCCceEEcCC
Q 028942           78 LVLLNVSNNKLK-SLPESIGSC------------------------------------------------YSLEELQAND  108 (201)
Q Consensus        78 L~~L~l~~~~~~-~~~~~~~~~------------------------------------------------~~L~~L~l~~  108 (201)
                      ++++++.+|.+. .+|..+...                                                +.++.+++.+
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666544 233333222                                                2334444444


Q ss_pred             CcCCcCChhhhCCCccceEEccCCcCC-ccChhhhhcCccCCeEecccCCCCh
Q 028942          109 NLIGELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus       109 n~i~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      +.++..+..+..++.++.|++++|.+. .+|.. +.++++|++|++++|.++.
T Consensus       231 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             SEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccCccCeecccCChH-HhCCCCCCEEECcCCcccc
Confidence            444333344555677888888888885 66665 5778888888888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3.6e-16  Score=108.03  Aligned_cols=123  Identities=21%  Similarity=0.270  Sum_probs=56.9

Q ss_pred             cEEecCCCcCcccCccccCCCCCcEEeccCCCCcc-C-chhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEeeCC
Q 028942           10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITS-L-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNN   86 (201)
Q Consensus        10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~-~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~   86 (201)
                      +.++.+++.++.+|..+.  ++++.|++++|.++. + +..+..+++|+.|++++|.+..++ ..+..+.+|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345555555555554432  345555555555542 2 222344555555555555554432 23344445555555555


Q ss_pred             CCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcC
Q 028942           87 KLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l  134 (201)
                      .+..+++ .|..+++|+.|++++|.++.++. .+..+++|+++++++|.+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            5544432 23444444444444444444432 233344444444444444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.4e-15  Score=113.87  Aligned_cols=151  Identities=28%  Similarity=0.476  Sum_probs=112.9

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN   82 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   82 (201)
                      +..+++++.+.++++.+..+++ +..+++|+.+++++|.++.++ .+..++.++.+++++|.++.+++ +..+++|++++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEee
Confidence            4566778888888888777654 455678888888888887764 45677788888888888777643 66777888888


Q ss_pred             eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942           83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  160 (201)
Q Consensus        83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~  160 (201)
                      ++++.+..+++ +..++.++.+.+..|.++.++ .+..++.++.+++++|.+..++.  +..+++|+.|++++|.++.
T Consensus       270 l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         270 LGANQISNISP-LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ccCcccCCCCc-ccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence            88888776654 566777888888888777654 35667778888888888877654  5778888888888888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=4.6e-16  Score=107.45  Aligned_cols=130  Identities=22%  Similarity=0.350  Sum_probs=111.9

Q ss_pred             CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-c-chhhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCceEEcC
Q 028942           31 SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-L-PETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQAN  107 (201)
Q Consensus        31 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~  107 (201)
                      ..+.++.+++.++.+|..+  ...+++|++++|.++. + +..|..+.+|+.|++++|.+..++ ..+...+.|+.|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3567888899999998765  2579999999999975 4 346688999999999999998764 467788999999999


Q ss_pred             CCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          108 DNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       108 ~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +|.++.++. .+..++.|+.|+|++|.++.++..+|..+++|+++++.+|++.++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            999998865 5788999999999999999999988999999999999999998664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.1e-14  Score=101.49  Aligned_cols=148  Identities=26%  Similarity=0.429  Sum_probs=122.7

Q ss_pred             ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccc------------
Q 028942            2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP------------   69 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~------------   69 (201)
                      .+..|++|+.|++++|.+..+++ +..+++++.+.+.++.++.++ ++..++.|++++++++....++            
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  135 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY  135 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccccccccchhccccchhhhh
Confidence            46789999999999999988764 788999999999999888774 5677888888888877644211            


Q ss_pred             ---------hhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChh
Q 028942           70 ---------ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN  140 (201)
Q Consensus        70 ---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  140 (201)
                               ..+....+++++++++|.+...+. +..+++|+.|++++|.+++++. +..+++|++|++++|.++.++. 
T Consensus       136 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-  212 (227)
T d1h6ua2         136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-  212 (227)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-
T ss_pred             chhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-
Confidence                     235667889999999998876644 6789999999999999998865 7788999999999999998875 


Q ss_pred             hhhcCccCCeEeccc
Q 028942          141 LLKDCKALQNISLHN  155 (201)
Q Consensus       141 ~~~~~~~L~~l~l~~  155 (201)
                       ++++++|+.|++++
T Consensus       213 -l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 -LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GTTCTTCCEEEEEE
T ss_pred             -cccCCCCCEEEeeC
Confidence             78999999999863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.56  E-value=6.2e-17  Score=112.38  Aligned_cols=112  Identities=24%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCC
Q 028942           21 RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYS  100 (201)
Q Consensus        21 ~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  100 (201)
                      .++.++..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.......+|+.|++++|.++.++ .+..+++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~  116 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccc
Confidence            33444444455555555555444442 244444455555555544444333333334444555544444432 1333444


Q ss_pred             CceEEcCCCcCCcCCh--hhhCCCccceEEccCCcC
Q 028942          101 LEELQANDNLIGELPA--SICNLIHLKSLCLNNNNI  134 (201)
Q Consensus       101 L~~L~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l  134 (201)
                      |+.|++++|.++.++.  .+..++.|+.|++++|++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcc
Confidence            4444544444444431  234444444444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=2.8e-14  Score=105.47  Aligned_cols=155  Identities=28%  Similarity=0.390  Sum_probs=119.9

Q ss_pred             cccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCC-CEEEecCCcCcc------------
Q 028942            3 ISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRL-ERLSILGNMLTC------------   67 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L-~~L~l~~~~~~~------------   67 (201)
                      +..+..|+.+++++|.+. .+|..+..++.++.+++++|.+. .+|..+..+..+ +.+++++|+++.            
T Consensus       121 ~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~  200 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA  200 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred             ccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456777888888887765 45777888888888888888776 566666666554 666666665432            


Q ss_pred             ------------cchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcC
Q 028942           68 ------------LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        68 ------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l  134 (201)
                                  +|..+..+.+++.+++.++.+...+..+..++.++.|++++|.++ .+|..++.+++|++|++++|.+
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence                        233445667888888888887765566788899999999999998 8999999999999999999999


Q ss_pred             C-ccChhhhhcCccCCeEecccCCCC
Q 028942          135 G-QIPANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       135 ~-~~~~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      . .+|.  +..+++|+.+++.+|+.-
T Consensus       281 ~g~iP~--~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         281 CGEIPQ--GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEECCC--STTGGGSCGGGTCSSSEE
T ss_pred             cccCCC--cccCCCCCHHHhCCCccc
Confidence            5 7775  467889999999999743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=101.52  Aligned_cols=166  Identities=21%  Similarity=0.281  Sum_probs=113.3

Q ss_pred             CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCcc-Cc-hhhhCcCCCCEEEecC-CcCcccc-hhhhcCCCCCEE
Q 028942            7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITS-LP-DELGQLVRLERLSILG-NMLTCLP-ETIGSLRNLVLL   81 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~-~~-~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L   81 (201)
                      +++++|++++|.++.+|. .|.++++|+.+++++|.+.. ++ ..+..++.++++.+.. +.+..++ ..+..+++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            368889999998888865 57888999999998887764 32 3456677788887654 4555553 345677788888


Q ss_pred             EeeCCCCCcCcc--------------------------cccCC-CCCceEEcCCCcCCcCChhhhCCCccceE-EccCCc
Q 028942           82 NVSNNKLKSLPE--------------------------SIGSC-YSLEELQANDNLIGELPASICNLIHLKSL-CLNNNN  133 (201)
Q Consensus        82 ~l~~~~~~~~~~--------------------------~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~L~~L-~l~~~~  133 (201)
                      ++.++.+...+.                          .+..+ ..+..+++.+|.++.++........+..+ .+.+|.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            888776653321                          11111 24556677777777666554445554444 567788


Q ss_pred             CCccChhhhhcCccCCeEecccCCCChhhhccccChhHH
Q 028942          134 IGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF  172 (201)
Q Consensus       134 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~l  172 (201)
                      +++++..++.++++|+.|++++|+++.-....+..++.|
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence            999988888999999999999999885443444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=1.6e-15  Score=105.14  Aligned_cols=129  Identities=25%  Similarity=0.357  Sum_probs=107.9

Q ss_pred             CcEEeccCC--CCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCC
Q 028942           32 LKVMTLDGN--RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN  109 (201)
Q Consensus        32 L~~l~l~~~--~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  109 (201)
                      .+.+.+.+.  .+..++..+..+.+|++|++++|.++.++ .+..+.+|++|++++|.+..++.....++.|+.|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            444555443  45677788999999999999999999985 588899999999999999988765566678999999999


Q ss_pred             cCCcCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCChhh
Q 028942          110 LIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       110 ~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .++.++ .+..+++|+.|++++|.+..++. ..+..+++|+.|++.+|++....
T Consensus       104 ~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            999885 46778899999999999988764 45789999999999999987543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-12  Score=86.10  Aligned_cols=110  Identities=21%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCC-CCccCc-hhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCC
Q 028942            3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGN-RITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLV   79 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~-~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~   79 (201)
                      ...+...+.+..+++.+..+|..+..+++++.+++.++ .++.++ .+|..++.|+.|++++|+++.++ ..|..+++|+
T Consensus         4 ~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           4 ACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            34455566677777777777777777788888888655 477664 44677778888888888887774 4467777888


Q ss_pred             EEEeeCCCCCcCcccccCCCCCceEEcCCCcCC
Q 028942           80 LLNVSNNKLKSLPESIGSCYSLEELQANDNLIG  112 (201)
Q Consensus        80 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  112 (201)
                      +|++++|.+..++........++.|++++|++.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCccc
Confidence            888888887777665555556777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-12  Score=86.95  Aligned_cols=108  Identities=17%  Similarity=0.136  Sum_probs=82.3

Q ss_pred             CCCEEEecCCcCcccchhhhcCCCCCEEEeeCC-CCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEcc
Q 028942           54 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNN-KLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLN  130 (201)
Q Consensus        54 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~  130 (201)
                      ....++.+++.+..+|..+..+++++.|++.++ .++.++. .+..+++|+.|++++|.++.++ .++..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345566666666666666667777888888655 4776653 5677888888888888888774 457788889999999


Q ss_pred             CCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942          131 NNNIGQIPANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       131 ~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      +|.+.+++..++... .|+.|++.+|++.|+.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred             CCCCcccChhhhccc-cccccccCCCcccCCc
Confidence            999988888776655 6899999999998765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=94.89  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=80.0

Q ss_pred             cCCCccEEecCCCcCcc--cCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCc-Ccc--cchhhhcCCCC
Q 028942            5 KLINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNM-LTC--LPETIGSLRNL   78 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~~~L   78 (201)
                      ...+|++|+++++.+..  +...+..+++|+.+.++++.+. ..+..+..+++|++|++++|. ++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34466677777666542  3444566677777777776655 234445566667777776643 332  22223455666


Q ss_pred             CEEEeeCCC-CCc--Ccccc-cCCCCCceEEcCCC--cCC--cCChhhhCCCccceEEccCCc-CCccChhhhhcCccCC
Q 028942           79 VLLNVSNNK-LKS--LPESI-GSCYSLEELQANDN--LIG--ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQ  149 (201)
Q Consensus        79 ~~L~l~~~~-~~~--~~~~~-~~~~~L~~L~l~~n--~i~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~  149 (201)
                      ++|+++++. +..  +...+ ..++.|+.++++++  .++  .+......+++|++|++++|. ++......+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777666642 221  11111 22345555555543  222  122223345555555555543 3322222234455555


Q ss_pred             eEecccC-CCChhhhcc
Q 028942          150 NISLHNN-PISMDQFQQ  165 (201)
Q Consensus       150 ~l~l~~n-~l~~~~~~~  165 (201)
                      +|++.++ .+++.++..
T Consensus       204 ~L~L~~C~~i~~~~l~~  220 (284)
T d2astb2         204 HLSLSRCYDIIPETLLE  220 (284)
T ss_dssp             EEECTTCTTCCGGGGGG
T ss_pred             EEECCCCCCCChHHHHH
Confidence            5555552 454444333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-12  Score=91.86  Aligned_cols=162  Identities=20%  Similarity=0.268  Sum_probs=117.6

Q ss_pred             cccCCCccEEecCCCcCcc-cCccccCCCCCcEEeccCC-CCcc--CchhhhCcCCCCEEEecCCc-Ccc--cchhhhc-
Q 028942            3 ISKLINIQRLVLDDNHIER-LPVNLGKLQSLKVMTLDGN-RITS--LPDELGQLVRLERLSILGNM-LTC--LPETIGS-   74 (201)
Q Consensus         3 ~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~l~l~~~-~l~~--~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~-   74 (201)
                      +.+|++|++|.++++.+.. ....+..+++|+.|+++++ .++.  +..-...+++|++|++++|. ++.  +...+.. 
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            4678999999999998873 4556778999999999986 5552  22334568999999999974 442  2233333 


Q ss_pred             CCCCCEEEeeCCC--CC--cCcccccCCCCCceEEcCCC-cCC-cCChhhhCCCccceEEccCC-cCCccChhhhhcCcc
Q 028942           75 LRNLVLLNVSNNK--LK--SLPESIGSCYSLEELQANDN-LIG-ELPASICNLIHLKSLCLNNN-NIGQIPANLLKDCKA  147 (201)
Q Consensus        75 ~~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~n-~i~-~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~  147 (201)
                      .+.|+.+++.++.  +.  .+......+++|+.|++++| .++ .....+..++.|++|++++| .++......+..+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            4689999998763  33  23344567899999999987 466 34456778899999999996 454433334678999


Q ss_pred             CCeEecccCCCChhhhcc
Q 028942          148 LQNISLHNNPISMDQFQQ  165 (201)
Q Consensus       148 L~~l~l~~n~l~~~~~~~  165 (201)
                      |+.|++.++ +++.++..
T Consensus       227 L~~L~l~~~-~~d~~l~~  243 (284)
T d2astb2         227 LKTLQVFGI-VPDGTLQL  243 (284)
T ss_dssp             CCEEECTTS-SCTTCHHH
T ss_pred             CCEEeeeCC-CCHHHHHH
Confidence            999999887 55554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=87.42  Aligned_cols=153  Identities=20%  Similarity=0.297  Sum_probs=112.0

Q ss_pred             ccccCCCccEEecCCCcCcc-c-CccccCCCCCcEEeccC-CCCccC-chhhhCcCCCCEEEecCCcCcccc--------
Q 028942            2 EISKLINIQRLVLDDNHIER-L-PVNLGKLQSLKVMTLDG-NRITSL-PDELGQLVRLERLSILGNMLTCLP--------   69 (201)
Q Consensus         2 ~~~~l~~L~~L~l~~~~l~~-l-~~~~~~l~~L~~l~l~~-~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~--------   69 (201)
                      .|.++++|++|++++|.+.. + +..|..++.++.+.+.. +.+..+ +..+..++.|++++++++.+...+        
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            47889999999999998764 4 44577888888887653 556544 344677888888888887665321        


Q ss_pred             ------------------hhhhcC-CCCCEEEeeCCCCCcCcccccCCCCCceEE-cCCCcCCcCCh-hhhCCCccceEE
Q 028942           70 ------------------ETIGSL-RNLVLLNVSNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPA-SICNLIHLKSLC  128 (201)
Q Consensus        70 ------------------~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~n~i~~~~~-~~~~~~~L~~L~  128 (201)
                                        ..+..+ ..++.+++.+|.+..++.......++..+. +.+|.++.++. .+..+++|+.|+
T Consensus       128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             cccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence                              112222 356677888888887776666667766664 57778999875 478899999999


Q ss_pred             ccCCcCCccChhhhhcCccCCeEecc
Q 028942          129 LNNNNIGQIPANLLKDCKALQNISLH  154 (201)
Q Consensus       129 l~~~~l~~~~~~~~~~~~~L~~l~l~  154 (201)
                      +++|.++.++...+.+++.|+.+++.
T Consensus       208 Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         208 ISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCCcCCccCHHHHcCCcccccCcCC
Confidence            99999999988777777777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=1.3e-11  Score=92.09  Aligned_cols=160  Identities=23%  Similarity=0.266  Sum_probs=87.8

Q ss_pred             ccCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCcc-----Cchh---------hhCcCCCCEEEecCCc
Q 028942            4 SKLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITS-----LPDE---------LGQLVRLERLSILGNM   64 (201)
Q Consensus         4 ~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~-----~~~~---------~~~l~~L~~L~l~~~~   64 (201)
                      ..+++|+.|++++|.+..     +...+...++|+.+++++|.+..     +...         ....+.++.+.++++.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            345666677777666552     23334455667777776665541     0000         1234455666666655


Q ss_pred             Ccc-----cchhhhcCCCCCEEEeeCCCCCc------CcccccCCCCCceEEcCCCcCCc-----CChhhhCCCccceEE
Q 028942           65 LTC-----LPETIGSLRNLVLLNVSNNKLKS------LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLC  128 (201)
Q Consensus        65 ~~~-----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~  128 (201)
                      +..     +...+.....++.+++.+|.+..      +...+..++.|+.|++++|.++.     +...+..++.|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            442     22334455667777777776652      12334556677777777776652     233455666777777


Q ss_pred             ccCCcCCccCh----hhhhc--CccCCeEecccCCCChhhh
Q 028942          129 LNNNNIGQIPA----NLLKD--CKALQNISLHNNPISMDQF  163 (201)
Q Consensus       129 l~~~~l~~~~~----~~~~~--~~~L~~l~l~~n~l~~~~~  163 (201)
                      +++|.++....    ..+..  ...|++|++++|.|+.+++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            77777643321    11222  2456777777777765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.14  E-value=6.9e-10  Score=82.22  Aligned_cols=100  Identities=28%  Similarity=0.373  Sum_probs=82.2

Q ss_pred             CCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCC
Q 028942            7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN   86 (201)
Q Consensus         7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~   86 (201)
                      .++++|+++++.++.+|+.   .++|+.|++++|.++.+|..   ..+|+.|++.+|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            4688999999999999864   46899999999999998854   45789999999998877532   246999999999


Q ss_pred             CCCcCcccccCCCCCceEEcCCCcCCcCCh
Q 028942           87 KLKSLPESIGSCYSLEELQANDNLIGELPA  116 (201)
Q Consensus        87 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  116 (201)
                      .+..+|. +..++.|+.+++.++.++..+.
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccc-hhhhccceeecccccccccccc
Confidence            9998875 5678999999999988775543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=2.5e-10  Score=84.98  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             CCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC------ChhhhCCCccceEEccCCcCCccC----h
Q 028942           75 LRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL------PASICNLIHLKSLCLNNNNIGQIP----A  139 (201)
Q Consensus        75 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~------~~~~~~~~~L~~L~l~~~~l~~~~----~  139 (201)
                      ...++.+.+++|.+..     +...+..++.++.++++.|.++.-      ...+..++.|+.|++++|.++...    .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            3445555555555441     122344567788888888877631      223556778889999888874321    2


Q ss_pred             hhhhcCccCCeEecccCCCChhhhcc
Q 028942          140 NLLKDCKALQNISLHNNPISMDQFQQ  165 (201)
Q Consensus       140 ~~~~~~~~L~~l~l~~n~l~~~~~~~  165 (201)
                      ..+..+++|++|++++|.|+..+...
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             ccccccccchhhhhhcCccCchhhHH
Confidence            34677888999999999888654433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=5e-08  Score=71.90  Aligned_cols=79  Identities=35%  Similarity=0.439  Sum_probs=64.1

Q ss_pred             CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942            6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN   85 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   85 (201)
                      .++|+.|++++|.++.+|..+   .+|+.|++.+|.++.++.-   .+.|++|++++|.+..+|. +..+.+|+++++.+
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDN  129 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccccccccc-hhhhccceeecccc
Confidence            368999999999999998654   5789999999998877531   2358999999999998875 56788999999998


Q ss_pred             CCCCcC
Q 028942           86 NKLKSL   91 (201)
Q Consensus        86 ~~~~~~   91 (201)
                      +.+...
T Consensus       130 ~~~~~~  135 (353)
T d1jl5a_         130 NSLKKL  135 (353)
T ss_dssp             SCCSCC
T ss_pred             cccccc
Confidence            876633

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.3e-09  Score=80.40  Aligned_cols=157  Identities=22%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CCCccEEecCCCcCcc------cCccccCCCCCcEEeccCCCCccC-----chhhhCcCCCCEEEecCCcCccc-----c
Q 028942            6 LINIQRLVLDDNHIER------LPVNLGKLQSLKVMTLDGNRITSL-----PDELGQLVRLERLSILGNMLTCL-----P   69 (201)
Q Consensus         6 l~~L~~L~l~~~~l~~------l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~~~l~~L~~L~l~~~~~~~~-----~   69 (201)
                      ...++.+.+.++.+..      +.........++.+++++|.+...     ...+...+.+..+++++|.+...     .
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4455566666555431      122233345566666666655421     12233445555666665554421     1


Q ss_pred             hhhh-cCCCCCEEEeeCCCCCcC-----cccccCCCCCceEEcCCCcCCc-----CChhhh-CCCccceEEccCCcCCcc
Q 028942           70 ETIG-SLRNLVLLNVSNNKLKSL-----PESIGSCYSLEELQANDNLIGE-----LPASIC-NLIHLKSLCLNNNNIGQI  137 (201)
Q Consensus        70 ~~~~-~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~-~~~~L~~L~l~~~~l~~~  137 (201)
                      ..+. ....|+.+++.++.+...     .......+.|+.|++++|.+++     +...+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            1111 123455555555554421     1222334455666666555542     112222 234455666666655332


Q ss_pred             C----hhhhhcCccCCeEecccCCCChhh
Q 028942          138 P----ANLLKDCKALQNISLHNNPISMDQ  162 (201)
Q Consensus       138 ~----~~~~~~~~~L~~l~l~~n~l~~~~  162 (201)
                      .    ...+..+++|++|++++|.|+.++
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence            1    112344555666666666655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1e-08  Score=78.25  Aligned_cols=160  Identities=24%  Similarity=0.240  Sum_probs=113.9

Q ss_pred             cCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCcc-----Cchhhh-CcCCCCEEEecCCcCccc-----
Q 028942            5 KLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITS-----LPDELG-QLVRLERLSILGNMLTCL-----   68 (201)
Q Consensus         5 ~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~-----~~~~~~-~l~~L~~L~l~~~~~~~~-----   68 (201)
                      ....++.+++++|.+..     ....+...+.+..+++++|.++.     +...+. ....++.++++++.+...     
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            45688999999998763     23345567889999999998862     122222 345799999999987643     


Q ss_pred             chhhhcCCCCCEEEeeCCCCCc-----Cccccc-CCCCCceEEcCCCcCCc-----CChhhhCCCccceEEccCCcCCcc
Q 028942           69 PETIGSLRNLVLLNVSNNKLKS-----LPESIG-SCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQI  137 (201)
Q Consensus        69 ~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~~  137 (201)
                      ...+....+|++|++++|.+..     ++..+. ..+.|+.|++++|.+++     +...+..++.|++|++++|.++..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            2334566789999999998862     333333 46779999999999974     344566788999999999998542


Q ss_pred             Ch-----hhhhcCccCCeEecccCCCChhhhc
Q 028942          138 PA-----NLLKDCKALQNISLHNNPISMDQFQ  164 (201)
Q Consensus       138 ~~-----~~~~~~~~L~~l~l~~n~l~~~~~~  164 (201)
                      ..     .+......|+.+++.++.+..+...
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence            22     2222344799999999999866543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.9e-09  Score=70.70  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=41.0

Q ss_pred             hcCCCCCEEEeeCCCCCcCc---ccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccC-------hhh
Q 028942           73 GSLRNLVLLNVSNNKLKSLP---ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIP-------ANL  141 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~-------~~~  141 (201)
                      ..++.|++|++++|.++.++   ..+..+++|+.|++++|.+++++. .......++.+++++|++....       ..+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34556666666666665442   223445666666666666665543 1122334566666666653221       133


Q ss_pred             hhcCccCCeEe
Q 028942          142 LKDCKALQNIS  152 (201)
Q Consensus       142 ~~~~~~L~~l~  152 (201)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45556665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.1e-08  Score=64.96  Aligned_cols=83  Identities=28%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             chhhhCcCCCCEEEecCCcCcccc---hhhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC------
Q 028942           46 PDELGQLVRLERLSILGNMLTCLP---ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP------  115 (201)
Q Consensus        46 ~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~------  115 (201)
                      +.....++.|++|++++|+++.++   ..+..+++|+.|++++|.++.++. .......++.+++.+|+++...      
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334457889999999999998763   446778999999999999998765 2334557999999999987442      


Q ss_pred             --hhhhCCCccceEE
Q 028942          116 --ASICNLIHLKSLC  128 (201)
Q Consensus       116 --~~~~~~~~L~~L~  128 (201)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2355688888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=2.2e-06  Score=56.63  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             hcCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCCc-----CChhhhCCCccceEEccCCcCCccC----
Q 028942           73 GSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIP----  138 (201)
Q Consensus        73 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----  138 (201)
                      .....+++|++++|.+.     .+...+...+.|+.|++++|.++.     +...+...+.|+.|++++|.+..+.    
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            33445555555555544     122233445566666666666652     2234555667777777776554332    


Q ss_pred             ---hhhhhcCccCCeEecccCCC
Q 028942          139 ---ANLLKDCKALQNISLHNNPI  158 (201)
Q Consensus       139 ---~~~~~~~~~L~~l~l~~n~l  158 (201)
                         ..++...++|+.++++.+..
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhCCCccEeeCcCCCc
Confidence               23456678888888876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.17  E-value=4e-06  Score=55.36  Aligned_cols=106  Identities=23%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             CCCCcEEeccCC-CCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCCc-----Cc
Q 028942           29 LQSLKVMTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LP   92 (201)
Q Consensus        29 l~~L~~l~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~   92 (201)
                      .+.|+.++++++ .++     .+..++.....+++|++++|.+..     +...+...+.|+.|++++|.+..     +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666543 343     122344455566666766666552     22344555667777777776662     23


Q ss_pred             ccccCCCCCceEEcCCCcCCcC--------ChhhhCCCccceEEccCCcC
Q 028942           93 ESIGSCYSLEELQANDNLIGEL--------PASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        93 ~~~~~~~~L~~L~l~~n~i~~~--------~~~~~~~~~L~~L~l~~~~l  134 (201)
                      ..+...+.|+.|++.+|.+..+        ...+...+.|+.++++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            3456667778888877755543        22344567788887765543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.78  E-value=2.7e-05  Score=51.10  Aligned_cols=108  Identities=21%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             cCCCCCcEEeccC-CCCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCC-----c
Q 028942           27 GKLQSLKVMTLDG-NRIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----S   90 (201)
Q Consensus        27 ~~l~~L~~l~l~~-~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~   90 (201)
                      ...+.|+.+++++ +.++     .+..++...+.|++|++++|.+..     +...+.....++.+++.++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456677777765 3344     123344556677777777776652     2334455667777777777665     2


Q ss_pred             CcccccCCCCCceEEc--CCCcCCc-----CChhhhCCCccceEEccCCcC
Q 028942           91 LPESIGSCYSLEELQA--NDNLIGE-----LPASICNLIHLKSLCLNNNNI  134 (201)
Q Consensus        91 ~~~~~~~~~~L~~L~l--~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l  134 (201)
                      +...+...+.++.+++  +.|.+.+     +...+...+.++.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2344556677776555  3445542     333455677888888866544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.77  E-value=3.1e-05  Score=50.77  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=76.2

Q ss_pred             hCcCCCCEEEecC-CcCcc-----cchhhhcCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCC-----c
Q 028942           50 GQLVRLERLSILG-NMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIG-----E  113 (201)
Q Consensus        50 ~~l~~L~~L~l~~-~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~-----~  113 (201)
                      ...+.|++|++++ +.++.     +...+...++|++|++++|.+.     .+...+...+.++.+++.+|.++     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568899999987 44542     2344556788999999999887     23345566788999999998876     2


Q ss_pred             CChhhhCCCccceEEcc--CCcCCccC----hhhhhcCccCCeEecccCCCC
Q 028942          114 LPASICNLIHLKSLCLN--NNNIGQIP----ANLLKDCKALQNISLHNNPIS  159 (201)
Q Consensus       114 ~~~~~~~~~~L~~L~l~--~~~l~~~~----~~~~~~~~~L~~l~l~~n~l~  159 (201)
                      +...+...+.++.+++.  +|.++...    ..++..++.|+.|++..+...
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            33456667788876664  55664322    234667889999998876543