Citrus Sinensis ID: 028952

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHEHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTfiyyrnrtrppltvSIICKIFGLGLISCCVQTCLYvgigyssptlssaivdlTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKgpalvsmssssnlhnelrspqknwiIGGLVLAAGSFFLSLLYIVQLDLNY
Flexible Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Low Complexity Region (SEG)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Disordered region (IsUnstruct)
**SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV****************KNWIIGGLVLAAGSFFLSLLYIVQLDL**
Disordered Region (DISOPRED)
***VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV********************IGGLVLAAGSFFLSLLYIVQLDLNY
Disordered Region (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Disordered Region (DISPRO)
*WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS************KNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLNY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.935	0.510	0.471	1e-37
Q94JU2	367	WAT1-related protein At3g	no	no	0.945	0.517	0.507	2e-37
Q945L4	339	WAT1-related protein At5g	no	no	0.860	0.510	0.502	5e-37
F4KHA8	370	WAT1-related protein At5g	no	no	0.925	0.502	0.461	8e-34
F4JK59	347	WAT1-related protein At4g	no	no	0.890	0.515	0.454	2e-27
Q9LRS5	353	WAT1-related protein At3g	no	no	0.925	0.526	0.432	3e-27
Q56X95	355	WAT1-related protein At3g	no	no	0.915	0.518	0.422	5e-26
Q9SUF1	384	WAT1-related protein At4g	no	no	0.925	0.484	0.355	9e-25
Q9FL41	402	WAT1-related protein At5g	no	no	0.761	0.380	0.382	7e-23
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.920	0.486	0.343	1e-22

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 7/195 (3%)

Query: 8   AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLT 67
           A M AVEC  VGS+TL KAA  +G S +V + YS   + + +LLP + I+ R+R  P   
Sbjct: 22  AAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTL-LLLPLSVIFGRSRRLPAAK 80

Query: 68  VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             +  KIF LGL+    Q     GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR 
Sbjct: 81  SPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRS 140

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLV 181
            ++ AK IG ++SI+GAL V LYKGP +++ +S      +  LH +L S + +WIIGGL+
Sbjct: 141 SATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLL 200

Query: 182 LAAGSFFLSLLYIVQ 196
           LA+  F +S+ YI+Q
Sbjct: 201 LASQYFLISVWYILQ 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/195 (50%), Positives = 129/195 (66%), Gaps = 5/195 (2%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA +V +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct: 13  VTA-LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct: 71  MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
           +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct: 131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query: 185 GSFFLSLLYIVQLDL 199
             F + L YIVQ  +
Sbjct: 189 EYFCVPLWYIVQTQI 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 123/187 (65%), Gaps = 14/187 (7%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PPLT S
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPPLTFS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L  +S
Sbjct: 76  ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           S+AK +GT++SI GAL VTLY GP L  MSS S           +WIIGG +LA     +
Sbjct: 136 SVAKVLGTILSIIGALVVTLYHGPML--MSSHS-----------DWIIGGGLLALQYILV 182

Query: 190 SLLYIVQ 196
           S+ Y+V 
Sbjct: 183 SVSYLVM 189

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  143 bits (360), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 121/193 (62%), Gaps = 7/193 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  P     
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRLPSAKTP 83

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR  +
Sbjct: 84  VFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 130 SLAKSIGTMVSIAGALTVTLYKGP------ALVSMSSSSNLHNELRSPQKNWIIGGLVLA 183
           + AK IGT+VSI+GAL V LYKGP      +L   S + +L+  L S   +WIIGGL+LA
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 184 AGSFFLSLLYIVQ 196
                +S+ YI+Q
Sbjct: 204 TQYLLVSVWYILQ 216

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 8/187 (4%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A+EC  VGSS L KAA  +G S +V + Y+    A  +LL  + I+ R+R+ P    S
Sbjct: 21  MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYV-GATLVLLLLSLIFGRSRSLPTAKSS 79

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++ LR  +
Sbjct: 80  LFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSSA 139

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           + AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L      L
Sbjct: 140 TQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLGLQFLLL 192

Query: 190 SLLYIVQ 196
           S+ +I+Q
Sbjct: 193 SVWFILQ 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL++S
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLP-SLFFTDRSRSLPPLSLS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V LY GP +   SS   ++       L S   +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQ 196
              F+S+ +I+Q
Sbjct: 197 RDIFVSVSFILQ 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 119/194 (61%), Gaps = 10/194 (5%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+ P L++S
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRSLPSLSLS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK   + +S
Sbjct: 76  ILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS-------PQKNWIIGGLVL 182
           S+AK +GT+VS+ GAL V LY GP + + SS      +LR           +WIIGG +L
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPP--FPQLRQLLLPLSSSNSDWIIGGCLL 193

Query: 183 AAGSFFLSLLYIVQ 196
           A     + + +I+Q
Sbjct: 194 AIKDTLVPVAFILQ 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  113 bits (282), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 114/194 (58%), Gaps = 8/194 (4%)

Query: 9   VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
           +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct: 16  LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query: 69  SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
           S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct: 74  SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
             S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct: 134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query: 183 AAGSFFLSLLYIVQ 196
             G    S  Y++Q
Sbjct: 194 LLGCVAWSGFYVLQ 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 4/157 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M++++    G + + K ++N G S +VL+VY +A A   ++ P  F + R + +P +T S
Sbjct: 22  MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATA-VIAPFAFFFER-KAQPKITFS 79

Query: 70  IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
           I  ++F LGL+   + Q   Y+G+ Y+SPT S A+ ++ PA TFILA++ RME LDL+  
Sbjct: 80  IFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKL 139

Query: 129 SSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165
              AK  GT+V++AGA+ +T+YKGP +V +  +  +H
Sbjct: 140 WCQAKIAGTVVTVAGAMLMTIYKGP-IVELFWTKYMH 175

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 110/189 (58%), Gaps = 4/189 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query: 70  IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
           I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct: 77  IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query: 129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
            S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct: 137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query: 188 FLSLLYIVQ 196
             +   I+Q
Sbjct: 197 SYACFMILQ 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
255581150	348	Auxin-induced protein 5NG4, putative [Ri	0.970	0.560	0.604	3e-57
296086520	350	unnamed protein product [Vitis vinifera]	0.970	0.557	0.558	2e-56
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.970	0.560	0.578	7e-55
225424734	341	PREDICTED: auxin-induced protein 5NG4-li	0.925	0.545	0.563	4e-54
225424732	351	PREDICTED: auxin-induced protein 5NG4 [V	0.970	0.555	0.525	2e-52
255581154	354	Auxin-induced protein 5NG4, putative [Ri	0.965	0.548	0.577	6e-52
359811343	350	uncharacterized protein LOC100804032 [Gl	0.970	0.557	0.530	9e-50
356509316	351	PREDICTED: auxin-induced protein 5NG4-li	0.970	0.555	0.525	3e-49
356567988	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.970	0.555	0.510	2e-46
356502006	349	PREDICTED: auxin-induced protein 5NG4-li	0.950	0.547	0.568	2e-46

>gi|255581150|ref|XP_002531388.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528981|gb|EEF30972.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 148/197 (75%), Gaps = 2/197 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTA MVA E  EVG +T+ KAAM++G S FV  VYSNAFA + IL+PS+FI+YR 
Sbjct: 1   MWGTGVTAAMVATEFTEVGINTMMKAAMSRGMSQFVYTVYSNAFA-LLILIPSSFIFYRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R RP LTVSII + F LGL+SCCVQ  +  G+ YSSPTLS+A++DLTPAFTF+LA+ISRM
Sbjct: 60  RPRPQLTVSIIFRTFLLGLLSCCVQMFMNTGVKYSSPTLSAAMIDLTPAFTFLLAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNELRSPQKNWIIGG 179
           EKLD + QS+ AKSIGT+VS+AGAL VTLYKG  + ++ S SN L+  L      W+ GG
Sbjct: 120 EKLDYKSQSTQAKSIGTIVSVAGALIVTLYKGQPITTLPSESNSLNQPLLLLSSTWVTGG 179

Query: 180 LVLAAGSFFLSLLYIVQ 196
           +   AG+  L+LLYIVQ
Sbjct: 180 IFCTAGALCLALLYIVQ 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086520|emb|CBI32109.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 153/197 (77%), Gaps = 2/197 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  +  VM+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R 
Sbjct: 1   MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           +T PPLT SI+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RM
Sbjct: 60  KTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGG 179
           E LDLRV+SS AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG
Sbjct: 120 ENLDLRVRSSRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQ 196
           ++ A  +F L++L++ Q
Sbjct: 180 ILSAIAAFMLAVLFVFQ 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 146/197 (74%), Gaps = 2/197 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  + A+M+ +ECLEVG STL+KAAM +G SDFV +VYSNA + + ILL    +++R 
Sbjct: 1   MWSSDLMALMLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALS-VPILLFCCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT+SI+C+IF LG ISC  Q  L+VGI YSSPTL+SA+ DL PAFTFILA+ISRM
Sbjct: 60  RFPPPLTLSILCRIFILGFISCSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGG 179
           EKLDL+  S  AK IGT+VSI GAL VT+YKGP +   SS+  + +E LRS   NW+IGG
Sbjct: 120 EKLDLKAGSCRAKCIGTIVSIIGALIVTIYKGPQIAFASSTFKILDENLRSQISNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQ 196
            +LA  +  ++L Y+VQ
Sbjct: 180 FLLAISAVSIALFYVVQ 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424734|ref|XP_002266639.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 148/188 (78%), Gaps = 2/188 (1%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R +T PPLT S
Sbjct: 1   MLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRRKTPPPLTTS 59

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RME LDLRV+S
Sbjct: 60  ILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRMENLDLRVRS 119

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGGLVLAAGSFF 188
           S AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG++ A  +F 
Sbjct: 120 SRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGGILSAIAAFM 179

Query: 189 LSLLYIVQ 196
           L++L++ Q
Sbjct: 180 LAVLFVFQ 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424732|ref|XP_002266096.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086521|emb|CBI32110.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 153/198 (77%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAV-MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR 59
           MWS  +TAV ++ +ECL+VG  TL+KAAM +G SD+V +VYSNA A + +L   + +++R
Sbjct: 1   MWSSELTAVILLTIECLDVGLITLSKAAMRRGMSDYVFVVYSNALA-VPVLFLCSLLFHR 59

Query: 60  NRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR 119
            R+ PPLT SI+C+IF LGL+SC +Q   ++GIGYSSPTL+SA+ +L PAFT++LA+++R
Sbjct: 60  RRSPPPLTPSILCRIFLLGLVSCSLQMLKFIGIGYSSPTLASAMTNLIPAFTYVLAIVTR 119

Query: 120 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS-SNLHNELRSPQKNWIIG 178
           MEKLDL+V+SS AK +GT+VS+AGAL +T+YKGP +   S++ S L++ L  P+ NWIIG
Sbjct: 120 MEKLDLKVKSSRAKCLGTLVSVAGALLITIYKGPGIEFASTTPSMLNHNLLLPRSNWIIG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
           G + AA +F +++L + Q
Sbjct: 180 GFLTAAAAFMVAVLLVFQ 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581154|ref|XP_002531390.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528983|gb|EEF30974.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 147/199 (73%), Gaps = 5/199 (2%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTAVM+ +E LEVG +T+ KAAM+KG S ++L+VYSN  A I +LL S+ I+YR 
Sbjct: 4   MWGSGVTAVMLTLEFLEVGMNTVTKAAMSKGMSHYILVVYSNMIA-ISLLLSSSLIFYRK 62

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P +T+SIIC+IF L L+SC  Q   Y+GIGYSSPTL+SA++DLTPAFTFIL + SRM
Sbjct: 63  RIAPAITLSIICRIFVLSLLSCAGQVFTYIGIGYSSPTLASAMIDLTPAFTFILGVFSRM 122

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNEL--RSPQKNWII 177
           E+LDLR++S  AKSIGTMV I G L  TLYKG  +  +SSS + LH E+   SP  NW I
Sbjct: 123 ERLDLRIKSGQAKSIGTMVLIIGGLVFTLYKGLPITGISSSGDELHKEMLFLSPS-NWAI 181

Query: 178 GGLVLAAGSFFLSLLYIVQ 196
           GG  LAA S  L+L++++Q
Sbjct: 182 GGFFLAAHSIILALIFVIQ 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359811343|ref|NP_001241291.1| uncharacterized protein LOC100804032 [Glycine max] gi|255644380|gb|ACU22695.1| unknown [Glycine max]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/198 (53%), Positives = 142/198 (71%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A++ ++E L+V   T++KAAM KG +DFV ++YSNAFA   +LLP TF +YR 
Sbjct: 1   MKELGVVAILFSIEFLDVIVYTVSKAAMKKGMNDFVFVMYSNAFATC-LLLPITFFFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT  I+ ++F  G +SC VQ   + GIGYSSPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RPLPPLTYFIVAQLFINGFLSCSVQMLRFFGIGYSSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           EKLD +  S+ AKSIGT+VSI GAL +TLYKG A+++   S+ L   N   S Q +W++G
Sbjct: 120 EKLDWKTNSTRAKSIGTLVSITGALIITLYKGQAIINNHPSNKLFPKNLNSSEQFDWVVG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AVLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509316|ref|XP_003523396.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 142/198 (71%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A+++++E  +V   T++KAAM KG +DFV ++YSNAFA   +LLP TFI+YR 
Sbjct: 1   MKELGVVAILLSIEFFDVIVYTVSKAAMKKGMNDFVFVMYSNAFATC-LLLPITFIFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT  I+ ++F  G +SC VQ   + GIGY SPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RALPPLTYFIVGQLFINGFLSCSVQMLRFFGIGYGSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           E LD +  S+ AKSIGT+VSIAGAL +TLYKG A+++   S+ L     + S Q +W+IG
Sbjct: 120 EILDWKTNSTRAKSIGTLVSIAGALIITLYKGQAVINNHPSNKLFPKKHVSSEQFDWVIG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AVLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567988|ref|XP_003552196.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 139/198 (70%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A++++VE  +V   T++KAAM K  +D V ++YSNAFA   +LLP TFI+YR 
Sbjct: 1   MKDLGVVAILLSVEFFDVIVYTVSKAAMKKDMNDSVFVMYSNAFATC-LLLPITFIFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P LT  I+ ++F  G +SC VQ   + GIGY SPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RALPLLTYFIVGQLFINGFLSCSVQMLRFFGIGYCSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           EKLD + +S+ AKSIGT+VSI GAL +TLYKG A++    S+ L     + S Q +W++G
Sbjct: 120 EKLDWKTKSTRAKSIGTLVSIVGALIITLYKGQAVIKNHPSNKLFPKKHVSSEQFDWVLG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AMLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502006|ref|XP_003519813.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 137/197 (69%), Gaps = 6/197 (3%)

Query: 4   VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
           V V+A MVA   LEVG +TL KAA   G S+FV IVYSN F A+F L+PSTF+Y+R R  
Sbjct: 6   VSVSAAMVATLFLEVGLNTLIKAANTNGMSNFVFIVYSN-FLALFFLIPSTFLYHRKRAP 64

Query: 64  PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
           PP+  SI+ +IF L  +S  VQT  Y GI YSSPTL+SA+ DL PAFTFI A+ISRME L
Sbjct: 65  PPIPSSILWRIFLLCCLSTAVQTLTYTGIAYSSPTLNSAMSDLVPAFTFIFAIISRMENL 124

Query: 124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL----HNELRSPQKNWIIGG 179
           +L+++SS AK IGT++SIAGAL +TLYKG  L   SS  NL         S Q +WIIGG
Sbjct: 125 NLKLRSSHAKIIGTVISIAGALIITLYKGMPLTG-SSMRNLVLGGSEAYLSVQLDWIIGG 183

Query: 180 LVLAAGSFFLSLLYIVQ 196
            +LA  S  LS+L+IVQ
Sbjct: 184 FLLATSSLCLSVLFIVQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.945	0.517	0.502	2.8e-41
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.875	0.519	0.494	1e-36
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.950	0.516	0.462	4.6e-34
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.955	0.543	0.447	5.8e-34
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.955	0.540	0.432	9.5e-34
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.915	0.530	0.461	4.1e-33
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.955	0.533	0.442	8.5e-33
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.955	0.536	0.417	1.1e-30
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.925	0.484	0.355	2.5e-26
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.920	0.486	0.343	5.9e-25

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 98/195 (50%), Positives = 130/195 (66%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             VTA+++ +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct:    13 VTALVI-MECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct:    71 MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
             +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct:   131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query:   185 GSFFLSLLYIVQLDL 199
               F + L YIVQ  +
Sbjct:   189 EYFCVPLWYIVQTQI 203

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 94/190 (49%), Positives = 124/190 (65%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             +   MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PP
Sbjct:    13 ILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPP 71

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             LT SI+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L
Sbjct:    72 LTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISL 131

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAG 185
               +SS+AK +GT++SI GAL VTLY GP L  MSS S+           WIIGG +LA  
Sbjct:   132 GKKSSVAKVLGTILSIIGALVVTLYHGPML--MSSHSD-----------WIIGGGLLALQ 178

Query:   186 SFFLSLLYIV 195
                +S+ Y+V
Sbjct:   179 YILVSVSYLV 188

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 92/199 (46%), Positives = 124/199 (62%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  
Sbjct:    20 VPFTA-MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRL 77

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P     +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++
Sbjct:    78 PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQI 137

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGP------ALVSMSSSSNLHNELRSPQKNWII 177
              LR  ++ AK IGT+VSI+GAL V LYKGP      +L   S + +L+  L S   +WII
Sbjct:   138 VLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWII 197

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GGL+LA     +S+ YI+Q
Sbjct:   198 GGLLLATQYLLVSVWYILQ 216

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 89/199 (44%), Positives = 126/199 (63%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASL-LLLPSLFFTDRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL++SI+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
             +  + +SS+AK +GT++S+ GAL V LY GP +   SS        L   L S   +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GG +L     F+S+ +I+Q
Sbjct:   190 GGALLTIRDIFVSVSFILQ 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 86/199 (43%), Positives = 124/199 (62%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+
Sbjct:    11 AVLLTA-MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRS 68

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              P L++SI+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
                + +SS+AK +GT+VS+ GAL V LY GP + + SS        L   L S   +WII
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GG +LA     + + +I+Q
Sbjct:   189 GGCLLAIKDTLVPVAFILQ 207

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/193 (46%), Positives = 122/193 (63%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA M+A+EC  VGSS L KAA  +G S +V + Y+   A + +LL S  I+ R+R+ 
Sbjct:    16 VPFTA-MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLS-LIFGRSRSL 73

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P    S+  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++
Sbjct:    74 PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLA 183
              LR  ++ AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L 
Sbjct:   134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLG 186

Query:   184 AGSFFLSLLYIVQ 196
                  LS+ +I+Q
Sbjct:   187 LQFLLLSVWFILQ 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 88/199 (44%), Positives = 124/199 (62%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA++V VE   VG STL K A +KG + +  + YS   A++ +LLPS F   R+ +
Sbjct:    15 AVFLTAMLV-VETSVVGISTLFKFATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSSS 72

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+VSI+ KI  LG +        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS--NLHN---ELRSPQKNWII 177
             +  + +SSLAK +GT++S+ GAL V  Y GP +   SS    N       L S   +W+I
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GG +L     F+S+ +I+Q
Sbjct:   193 GGALLTMQGIFVSVSFILQ 211

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 83/199 (41%), Positives = 122/199 (61%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASL-LLLPSLFFTNRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+ SI+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    70 LPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWII 177
             +  + +SS+AK +GT++S+ GA  V  Y GP +   SS   L+    SP     + +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GG +L     F+S+ +I+Q
Sbjct:   190 GGAILTIQGIFVSVSFILQ 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 69/194 (35%), Positives = 114/194 (58%)

Query:     9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
             +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct:    16 LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query:    69 SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct:    74 SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query:   128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
               S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct:   134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query:   183 AAGSFFLSLLYIVQ 196
               G    S  Y++Q
Sbjct:   194 LLGCVAWSGFYVLQ 207

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 65/189 (34%), Positives = 110/189 (58%)

Query:    10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
             MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct:    19 MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query:    70 IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
             I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct:    77 IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query:   129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
              S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct:   137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query:   188 FLSLLYIVQ 196
               +   I+Q
Sbjct:   197 SYACFMILQ 205

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-38

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  135 bits (340), Expect = 2e-38
 Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+ PPL+VS
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSRSLPPLSVS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +        Y+GI YS+PTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V  Y GP +   SS   L+    SP       +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQ 196
              F+S+ +I+Q
Sbjct: 197 QGIFVSVSFILQ 208

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PLN00411	358	nodulin MtN21 family protein; Provisional	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.85
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.85
PRK11689	295	aromatic amino acid exporter; Provisional	99.84
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.84
PRK15430	296	putative chloramphenical resistance permease RarD;	99.83
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.76
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.74
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.68
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.67
COG2510	140	Predicted membrane protein [Function unknown]	99.61
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.61
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.6
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.59
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.47
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.47
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.31
PRK11272	292	putative DMT superfamily transporter inner membran	99.28
COG2962	293	RarD Predicted permeases [General function predict	99.25
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.25
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.23
KOG2765	416	consensus Predicted membrane protein [Function unk	99.21
PRK11689	295	aromatic amino acid exporter; Provisional	99.19
PLN00411	358	nodulin MtN21 family protein; Provisional	99.19
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.14
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.1
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.06
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.04
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.89
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.85
PRK15430	296	putative chloramphenical resistance permease RarD;	98.8
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.76
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.72
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.53
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.5
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.5
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.43
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.25
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.19
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.01
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.94
KOG2766	336	consensus Predicted membrane protein [Function unk	97.89
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.86
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.81
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.72
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.69
PRK13499	345	rhamnose-proton symporter; Provisional	97.47
COG2962	293	RarD Predicted permeases [General function predict	97.25
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.24
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.21
KOG2765	416	consensus Predicted membrane protein [Function unk	97.17
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.05
PRK13499	345	rhamnose-proton symporter; Provisional	97.04
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.0
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.99
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.66
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.53
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.4
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.36
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.18
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.17
PRK11431	105	multidrug efflux system protein; Provisional	95.96
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.95
COG2076	106	EmrE Membrane transporters of cations and cationic	95.89
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	95.76
KOG1580	337	consensus UDP-galactose transporter related protei	95.67
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.55
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.17
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.58
KOG1581	327	consensus UDP-galactose transporter related protei	93.85
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	93.6
KOG1580	337	consensus UDP-galactose transporter related protei	93.44
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.33
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.23
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.08
KOG1581	327	consensus UDP-galactose transporter related protei	92.28
KOG1443	349	consensus Predicted integral membrane protein [Fun	91.22
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	89.99
KOG3912	372	consensus Predicted integral membrane protein [Gen	87.72
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.4
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	86.8

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.94  E-value=7.3e-26  Score=195.08  Aligned_cols=197  Identities=43%  Similarity=0.663  Sum_probs=156.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028952            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (201)
Q Consensus         2 ~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~   81 (201)
                      ++.++|+.|+..+++++...++.|.+++.|++|..+.++|+.+|+++ ++|+.+.++|++++++.+++++..+.+.|+++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999 99988765543332445688889999999988


Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (201)
                      .+++.+++.|++|++|++++++.++.|+++.+++++++.|+++.+.+.+++|++|++++++|+.++...+++.....+.+
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  168 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP  168 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence            66778999999999999999999999999999999996555555555889999999999999998765444321000000


Q ss_pred             --ccc--cC-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          162 --SNL--HN-ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       162 --~~~--~~-~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                        .|.  .. +......+...|++++++|++|||+|.++|||+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~  211 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHI  211 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000  00 011122345679999999999999999999985

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.85  E-value=4.5e-20  Score=155.07  Aligned_cols=162  Identities=13%  Similarity=0.115  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 028952            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ   85 (201)
Q Consensus         7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~   85 (201)
                      .+.++...++||.+++++|...+ ++||.+++++|+.+++++ ++++...  ++++  ..+++++......|.++ ..++
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~-ll~~~~~--~~~~--~~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGIL-LLAFLLL--RGHP--LPTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HHHHHHH--hCCC--CCcHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999887 599999999999999998 8887654  2222  23567778888889888 7888


Q ss_pred             HHHHHhh-cccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952           86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (201)
Q Consensus        86 ~~~~~gl-~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (201)
                      .+++.+. +++++++++++.++.|+++.+++.+ +|||      +++++++|++++++|++++... +.           
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~------~~~~~~~~~~la~~Gv~ll~~~-~~-----------  144 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIR------TRKLEWLGIAIGLAGIVLLNSG-GN-----------  144 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hccc------CchhHHHHHHHHHHhHHHHhcC-cc-----------
Confidence            8999999 9999999999999999999999975 6999      6788889999999999887421 11           


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN  200 (201)
Q Consensus       165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~  200 (201)
                            . .....|+++.+++++|||.|.+.+||..
T Consensus       145 ------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~  173 (292)
T PRK11272        145 ------L-SGNPWGAILILIASASWAFGSVWSSRLP  173 (292)
T ss_pred             ------c-ccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                  1 1235799999999999999999999863

>TIGR00688 rarD rarD protein

Probab=99.85  E-value=4e-20  Score=152.39  Aligned_cols=162  Identities=12%  Similarity=0.025  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCHH-HHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLGL   79 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~gl   79 (201)
                      |+++++++++++||.+.+++|. .++ +||.++.++|+++++++ +.++...+++++    +.++.+++ .+......|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            6889999999999999999998 454 99999999999999988 777654422211    10112222 2344566666


Q ss_pred             HHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccC
Q 028952           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS  159 (201)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  159 (201)
                      +...++.++++|++++++++++++.++.|+++.+++++++|||      +++++++|++++++|+.++...+        
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek------~~~~~~l~~~~~~~Gv~li~~~~--------  144 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER------ISRFQFIAVIIATLGVISNIVLK--------  144 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHc--------
Confidence            6688999999999999999999999999999999999999999      67778899999999998764211        


Q ss_pred             CCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                                 ++ ..    .+.+++++||+.|.+.+|+.
T Consensus       145 -----------~~-~~----~~~l~aa~~~a~~~i~~~~~  168 (256)
T TIGR00688       145 -----------GS-LP----WEALVLAFSFTAYGLIRKAL  168 (256)
T ss_pred             -----------CC-ch----HHHHHHHHHHHHHHHHHhhc
Confidence                       11 11    35788999999999999986

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.84  E-value=5.7e-20  Score=154.69  Aligned_cols=172  Identities=15%  Similarity=0.091  Sum_probs=129.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-   81 (201)
                      +.+++++++.++++||.+++..|.+.++ ++|..+.++|+.+++++ +.++.   .+++. ++.++   + ....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~---~-~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK---R-YLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH---H-HHHHHhHHH
Confidence            5678899999999999999999999886 99999999999999998 77652   11111 11122   2 23344445 


Q ss_pred             HHHHHHHHHhhcc----cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccc
Q 028952           82 CCVQTCLYVGIGY----SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS  157 (201)
Q Consensus        82 ~~~~~~~~~gl~~----~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~  157 (201)
                      ..++.+++.|++|    +++++++++.++.|+++.+++++++|||      +++++++|++++++|++++...+ ...+.
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~------~~~~~~~g~~l~~~Gv~li~~~~-~~~~~  144 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQK------ANWLLIPGLLLALAGVAWVLGGD-NGLSL  144 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhHhheecCC-ccchh
Confidence            6777777777765    5788899999999999999999999999      67788899999999998876321 10000


Q ss_pred             cCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      .+    .    ..+..+...|+++.++|++|||.|.+++||.
T Consensus       145 ~~----~----~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689        145 AE----L----INNIASNPLSYGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             hh----h----hhccccChHHHHHHHHHHHHHHHHHHHHhhc
Confidence            00    0    0011123569999999999999999999986

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.84  E-value=2.1e-19  Score=151.44  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~   83 (201)
                      +..+..++++++||.+++++|.+.++ +||.++.++|+.++++. ++++..   ++    +.+++   .....|+.. ..
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~~---~~----~~~~~---~~~~~g~~~~~~   71 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFVA---RP----KVPLN---LLLGYGLTISFG   71 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHhc---CC----CCchH---HHHHHHHHHHHH
Confidence            34467889999999999999999875 99999999999998877 665431   21    12232   344456555 56


Q ss_pred             HHHHHHHhhcc-cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCc
Q 028952           84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS  162 (201)
Q Consensus        84 ~~~~~~~gl~~-~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  162 (201)
                      .+.+++.+++| .++++++++.+++|+++.+++++++|||      +++++++|++++++|+.++... +.         
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~------~~~~~~~~~~l~~~Gv~ll~~~-~~---------  135 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGER------LQGKQLAGIALAIFGVLVLIED-SL---------  135 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHhHHHhccc-cC---------
Confidence            66778889998 5889999999999999999999999999      6788899999999999887521 11         


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                             ........|+++.++++++|+.|.+++||.
T Consensus       136 -------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~  165 (299)
T PRK11453        136 -------NGQHVAMLGFMLTLAAAFSWACGNIFNKKI  165 (299)
T ss_pred             -------CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111223579999999999999999999985

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.83  E-value=9.1e-20  Score=153.54  Aligned_cols=164  Identities=10%  Similarity=-0.020  Sum_probs=129.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHH
Q 028952            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR--PPLTVSIICKIFGLGL   79 (201)
Q Consensus         2 ~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~gl   79 (201)
                      ++.|+++.+++++++||.+++..|.. + +++|.++.++|+.++.++ +.++...+++++..  ...+++++.. ...+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence            45578999999999999999999985 4 499999999999999988 77765442211100  0113444333 33566


Q ss_pred             HH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCccccc
Q 028952           80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (201)
Q Consensus        80 ~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~  158 (201)
                      ++ ..++.++++|++++++++++++.++.|+++.+++++++|||      +++++++|+++++.|++++...+       
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~------~~~~~~~g~~l~~~Gv~li~~~~-------  147 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER------FRRMQWLAVILAICGVLVQLWTF-------  147 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHc-------
Confidence            66 88999999999999999999999999999999999999999      67778899999999998875111       


Q ss_pred             CCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                                  ++ .    ..+.++++++||.|.+.+|+.
T Consensus       148 ------------~~-~----~~~~l~aa~~~a~~~i~~r~~  171 (296)
T PRK15430        148 ------------GS-L----PIIALGLAFSFAFYGLVRKKI  171 (296)
T ss_pred             ------------CC-c----cHHHHHHHHHHHHHHHHHHhc
Confidence                        11 1    146888999999999999986

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.81  E-value=9.6e-19  Score=143.80  Aligned_cols=150  Identities=14%  Similarity=0.142  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 028952           17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS   95 (201)
Q Consensus        17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~~~   95 (201)
                      ||.+++..|..++.+.||.+..+.|++.+.++ +.++...  +      .+++++......|.++ .+++.+++.|++|+
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999887789999999999999888 7775433  2      1344556777888888 99999999999999


Q ss_pred             CcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCch
Q 028952           96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW  175 (201)
Q Consensus        96 ~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (201)
                      ++++++++.++.|+++.+++.+++|||      +++++++|++++++|+.++.. ++                  +....
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~------~~~~~~~gi~i~~~Gv~li~~-~~------------------~~~~~  126 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKER------PRKLVLLAAVLGLAGAVLLLS-DG------------------NLSIN  126 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHhhcc-CC------------------ccccc
Confidence            999999999999999999999999999      677788999999999988752 11                  11234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952          176 IIGGLVLAAGSFFLSLLYIVQLDLN  200 (201)
Q Consensus       176 ~~G~~~~l~aa~~~a~~~il~~~~~  200 (201)
                      ..|+.+.++++++|+.|.+.+|+..
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~  151 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLV  151 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            6899999999999999999999853

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.76  E-value=7.1e-17  Score=135.78  Aligned_cols=161  Identities=7%  Similarity=0.004  Sum_probs=127.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC   82 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~   82 (201)
                      +.+++..+++++++|+.+..++|.+.++ .||.++.++|+++++++ ++++...  ++   .+.++++++.....|++..
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~~--~~---~~~~~~~~~~~~~~g~~~~   82 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFKP--WR---LRFAKEQRLPLLFYGVSLG   82 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHhH--Hh---ccCCHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999986 99999999999999998 7765422  21   1335677777778887666


Q ss_pred             HHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCc
Q 028952           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS  162 (201)
Q Consensus        83 ~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  162 (201)
                      ..+.+++.+++|++++.++++.++.|+++.+++    +|+      +.+  ..++.++++|+.++.. .+.         
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~------~~~--~~~~~i~~~Gv~li~~-~~~---------  140 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRR------PVD--FVWVVLAVLGLWFLLP-LGQ---------  140 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCC------hHH--HHHHHHHHHHHheeee-cCC---------
Confidence            677889999999999999999999999998765    244      232  3567788999987752 221         


Q ss_pred             cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                             +.+.....|+++.++++++||.|.+..|+.
T Consensus       141 -------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~  170 (293)
T PRK10532        141 -------DVSHVDLTGAALALGAGACWAIYILSGQRA  170 (293)
T ss_pred             -------CcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111224579999999999999999999885

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.74  E-value=3.3e-16  Score=132.08  Aligned_cols=151  Identities=11%  Similarity=0.064  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Q 028952           20 SSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTL   99 (201)
Q Consensus        20 ~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~   99 (201)
                      ..+..|.++++--.|..+++.|+.++.+. ..+.... ..+++ ++.++++++.++..|+++..++.+.+.|++|+++++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~   93 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWSS-GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF   93 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34578999875356999999999998877 6554211 11222 456788999999999998788899999999999999


Q ss_pred             hhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHH
Q 028952          100 SSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGG  179 (201)
Q Consensus       100 asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  179 (201)
                      ++++.++.|+++.+++++++|||      +++++++|++++++|+++..  .+                  +......|+
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~------~~~~~~~~l~l~~~Gv~l~~--~~------------------~~~~~~~G~  147 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQE------FPSTLWLSLLPIVGGVALAS--DT------------------ELSFNWAGF  147 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHhhhc--CC------------------cccccHHHH
Confidence            99999999999999999999999      67778899999999997643  11                  112345799


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 028952          180 LVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       180 ~~~l~aa~~~a~~~il~~~~  199 (201)
                      ++.++|+++|++|.+.+||.
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~  167 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKA  167 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999885

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.68  E-value=4.4e-15  Score=127.97  Aligned_cols=152  Identities=14%  Similarity=0.081  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952           18 VGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCLYVGIGY   94 (201)
Q Consensus        18 g~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~~~~~~~~~~~gl~~   94 (201)
                      .......|.+++. +| |+.++.+|++++.++ ...+... ..+++ ++.  .+++++.++..|+++...+...+.|+++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~-~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~  137 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWAT-GFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL  137 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556778999886 99 999999999999887 6554322 12122 223  2457788999999883345556799999


Q ss_pred             cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCc
Q 028952           95 SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN  174 (201)
Q Consensus        95 ~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (201)
                      ++++.+.++-+++|+++.++++++++||      +++++++++++.+.|+.+.... +                  . ..
T Consensus       138 ~svs~~~iika~~Pvft~lls~~~l~ek------~s~~~~l~l~l~v~Gv~l~~~~-~------------------~-~~  191 (350)
T PTZ00343        138 GAVSFTHVVKAAEPVFTALLSILFLKQF------LNLYAYLSLIPIVGGVALASVK-E------------------L-HF  191 (350)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHheecc-c------------------c-hh
Confidence            9999999999999999999999999999      6778899999999999987621 1                  1 12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          175 WIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       175 ~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      ...|++++++|+++|+.|.+..|++
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~  216 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKT  216 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999885

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.67  E-value=4e-15  Score=124.33  Aligned_cols=164  Identities=13%  Similarity=0.121  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV   84 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~   84 (201)
                      ..++.+.++++|+...+.+|...++ -++  ..++++..+.+. +.|+...+.++...+..+++.+. ....+.++ ..+
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   76 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVL-LTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVY   76 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHH-HHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHH
Confidence            3567789999999999999965444 234  347777777777 77876552211111223344433 44444445 899


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (201)
                      +.+++.|++++++++++.+.++.|+++.+++++++|||      +++++++|+.+++.|+.++... +.           
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~------~~~~~~~g~~~~~~Gv~ll~~~-~~-----------  138 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET------LSPLAWLGILIITLGLLVLGLS-RF-----------  138 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhcc-cc-----------
Confidence            99999999999999999999999999999999999999      6777889999999999887521 11           


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                            .+ ....|+.+.++++++|++|.+..|+.
T Consensus       139 ------~~-~~~~g~~~~l~aal~~a~~~i~~k~~  166 (281)
T TIGR03340       139 ------AQ-HRRKAYAWALAAALGTAIYSLSDKAA  166 (281)
T ss_pred             ------cc-cchhHHHHHHHHHHHHHHhhhhcccc
Confidence                  11 22468889999999999999998864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=1.5e-14  Score=105.44  Aligned_cols=136  Identities=12%  Similarity=0.080  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~   84 (201)
                      ...++.++++++||...++.|...+. +||..-++.|.+...++ +..+....++.+.....+.|.|..+.+.|+.+.+.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            35678899999999999999999975 99999999999999998 88777664544332346788888888888777999


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ..+||.+++.-.++...-+..+.|+++.++++++++||      ++..+++|+++.++|+++++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~------ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER------LSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999      56677899999999998765

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.61  E-value=3.3e-15  Score=108.84  Aligned_cols=124  Identities=22%  Similarity=0.268  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 028952           15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG   93 (201)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~   93 (201)
                      ++||.+.+..|...++ .||.+..++|+..+++. +... ...++++. ...+.+++......|.++ .+++.+++.|++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILL-LILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHH-Hhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999999886 99999999999999852 3322 22233322 456677778888999997 999999999999


Q ss_pred             ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ++++++++.+.+++|+++.++++++++|+      +++++++|+++.+.|++++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~------~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGER------PSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999      67788899999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.60  E-value=9.2e-14  Score=114.81  Aligned_cols=170  Identities=22%  Similarity=0.211  Sum_probs=129.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-   81 (201)
                      ..+.....+...+.|+.+....|...+...++....+.|+..+.+. ..+.... ++... .+..+ .+......+.++ 
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLL-EPRGL-RPALR-PWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHh-hcccc-ccccc-chHHHHHHHHHHH
Confidence            3456778888889999999999998764356677777799998877 5554333 11111 11111 134556666667 


Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHH-HHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCC
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS  160 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~-~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  160 (201)
                      ..++.+++.++++++++.++.+.++.|+++.+++. ++++||      ++++++.|+.+++.|++++...+..       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~------~~~~~~~~~~~~~~Gv~lv~~~~~~-------  147 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER------LSLLQILGILLALAGVLLILLGGGG-------  147 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHheecCCCc-------
Confidence            89999999999999999999999999999999997 666999      5677789999999999988632211       


Q ss_pred             CccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                               ..+. ...|+++.++++++|+.+.+.+|++
T Consensus       148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~  176 (292)
T COG0697         148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRL  176 (292)
T ss_pred             ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     0111 5789999999999999999999975

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.59  E-value=1.9e-13  Score=116.57  Aligned_cols=167  Identities=19%  Similarity=0.199  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952           15 CLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG   93 (201)
Q Consensus        15 ~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~   93 (201)
                      ++-..+...+...-++|.+ |..-.+.-+..-.++ ..+...++.+.++..+.-+++|...++++++-..++.+...|.+
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~  101 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ  101 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444445555554444554 555555555555555 55554442222111122234455566677766999999999999


Q ss_pred             ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCC
Q 028952           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK  173 (201)
Q Consensus        94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (201)
                      ||+.+.+.++.++.-+++.+++++++|||      .++.|++|+++|++|+.++...|....           +++..+.
T Consensus       102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~r------y~~~~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~~~~  164 (334)
T PF06027_consen  102 YTSVTSVQLLDCTSIPFVMILSFIFLKRR------YSWFHILGVLICIAGVVLVVVSDVLSG-----------SDSSSGS  164 (334)
T ss_pred             cccHhHHHhhhhhhhHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhheeeeccccc-----------ccCCCCC
Confidence            99999999999999999999999999999      567788999999999998876543211           1122345


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          174 NWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       174 ~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      +..+||+++++|+++||++.++++++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~  190 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKL  190 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999875

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.47  E-value=2e-12  Score=106.13  Aligned_cols=130  Identities=20%  Similarity=0.196  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028952            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSD--FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~   81 (201)
                      .++++..++++++|+.+.+..|...++ .+|  .....+|+.++.++ +.|.....++.   ...+.+++..+.+.++++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence            468889999999999999999998764 664  45555789999998 88876653322   233677778888899998


Q ss_pred             -HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhh
Q 028952           82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA  144 (201)
Q Consensus        82 -~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv  144 (201)
                       ..++.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~------~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGET------LSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhc
Confidence             89999999999999999999999999999999999999999      6677889999999986

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.47  E-value=2.7e-12  Score=107.99  Aligned_cols=169  Identities=14%  Similarity=0.043  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~   85 (201)
                      .++..++++++||...+..|...  |.++.++.  |..++.++ +..+... .|+.  ++.+++.+..-...|++-...|
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~-~~~~--~~~~~~~~~~g~l~G~~w~ig~   73 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAI-FVLP--EFWALSIFLVGLLSGAFWALGQ   73 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHH-HhCC--cccccHHHHHHHHHHHHHHhhh
Confidence            36788899999999999999864  68887775  78888877 6555444 2221  1112333333334444447788


Q ss_pred             HHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhh----HHHHHHHhhhhhheeeecCCcccccCC
Q 028952           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS  160 (201)
Q Consensus        86 ~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~  160 (201)
                      .+++.+.++++.+.+-.+.+ +.|++..+.+.+++|||      +++++    ++|+++++.|++++...++...     
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~------~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-----  142 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW------STSIQTLLGLLALILIIIGVYLTSRSKDKSA-----  142 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHhHheEEecccccc-----
Confidence            99999999999999999988 88899999999999999      56667    9999999999988754321100     


Q ss_pred             CccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN  200 (201)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~  200 (201)
                             ++.+..+..+|.++.++|+++|+.|.+..|...
T Consensus       143 -------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~  175 (290)
T TIGR00776       143 -------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG  175 (290)
T ss_pred             -------ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence                   000002346799999999999999999988754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.31  E-value=6.9e-11  Score=99.42  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~   83 (201)
                      .+.+..++++++|+.+.+..|...++ .+|.... +-..++++. +.|+....+.  . ...++..+...++.|+++ .+
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999998654 7887765 445666776 7776654222  1 224555666677899999 89


Q ss_pred             HHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        84 ~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ++.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|..+.+.|++...
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~------~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET------LTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      67778899999999998765

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.28  E-value=8.6e-11  Score=98.78  Aligned_cols=134  Identities=13%  Similarity=0.005  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~   83 (201)
                      ++.+..++++++|+.+.+..|... . -++...+++++.++++. +.++....+.... ...+.+.+..+.+.++++ .+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999863 2 34566778899999888 8877654322111 123567888899999998 89


Q ss_pred             HHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        84 ~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ++.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|.++.+.|+++..
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~------~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET------LSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      67778899999999998764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.25  E-value=3.1e-10  Score=93.79  Aligned_cols=164  Identities=13%  Similarity=-0.015  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH
Q 028952            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR--PPLTVSIICKIFGLGLIS   81 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~gl~~   81 (201)
                      .|+++..+.+.++||..+...|.. +. .++.++...|.+.+..+ ++.+....++++..  ...++|.+....+.++.-
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            579999999999999999999986 54 89999999999999998 66655543332221  123556666666666666


Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (201)
                      ..+...|.++.++-..-++|.=.+.+|++..+++.+++|||      .++.|++++.++.+||.......|         
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr------ls~~Q~iAV~lA~~GV~~~~~~~g---------  147 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER------LSRLQWIAVGLAAAGVLIQTWLLG---------  147 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHcC---------
Confidence            88889999999999999999999999999999999999999      688999999999999987653222         


Q ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN  200 (201)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~  200 (201)
                                +. .+    ..+.=+++|+.|-.+-|++.
T Consensus       148 ----------~l-pw----val~la~sf~~Ygl~RK~~~  171 (293)
T COG2962         148 ----------SL-PW----VALALALSFGLYGLLRKKLK  171 (293)
T ss_pred             ----------CC-cH----HHHHHHHHHHHHHHHHHhcC
Confidence                      11 12    24455778899988887764

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.25  E-value=1.4e-11  Score=89.58  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHH
Q 028952           39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL  116 (201)
Q Consensus        39 ~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~  116 (201)
                      .+|+.++.++ +..+....++.++ .+..+.+.+......|+++ ..++.+++.|+++.+ +.++.+.+++|+++.++++
T Consensus         2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            5799999998 7777666322111 0122334455666778888 699999999999999 5888999999999999999


Q ss_pred             HHHHhhcchhhhchhhhHHHHHHHhhhhhheeee
Q 028952          117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (201)
Q Consensus       117 ~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~  150 (201)
                      +++|||      +++++++|++++++|++++...
T Consensus        80 ~~~~er------~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   80 LFFKER------LSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHhcCC------CCHHHHHHHHHHHHHHHHHhhh
Confidence            999999      5677789999999999998743

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.23  E-value=8.7e-10  Score=89.45  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~   85 (201)
                      +++.++.+++.-=...-+.|..+.. .+|.-.+.+|..+++++ ++++..- +|    .+.+++++..+...|..-...|
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP-wr----~r~~~~~~~~~~~yGvsLg~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP-WR----RRLSKPQRLALLAYGVSLGGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH-HH----hccChhhhHHHHHHHHHHHHHH
Confidence            5778888888877888899999987 99999999999999998 7765432 12    3567788888988887667778


Q ss_pred             HHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCcccc
Q 028952           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (201)
Q Consensus        86 ~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  165 (201)
                      .++|.+++.++-+.+..+.++-|+....+.    .+|        .+..+-+.+.+.|..++.-. +.            
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--------~~d~vwvaLAvlGi~lL~p~-~~------------  140 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--------LRDFVWVALAVLGIWLLLPL-GQ------------  140 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--------hhhHHHHHHHHHHHHhheec-cC------------
Confidence            889999999999999999999999877653    222        23456688899998877522 21            


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                          +.+..+..|..+++.+..||+.|++..+|.
T Consensus       141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~  170 (292)
T COG5006         141 ----SVWSLDPVGVALALGAGACWALYIVLGQRA  170 (292)
T ss_pred             ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence                233456899999999999999999998874

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.21  E-value=1.1e-10  Score=99.11  Aligned_cols=105  Identities=18%  Similarity=0.259  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcc
Q 028952           76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (201)
Q Consensus        76 ~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~  155 (201)
                      ....+-++++..++.++.+|+.+..+++..+..+|+..++.++..||      .++.|.+++.+++.|++++...++.  
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~------ft~sKllav~~si~GViiVt~~~s~--  235 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVER------FTLSKLLAVFVSIAGVIIVTMGDSK--  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcch------hhHHHHHHHHHhhccEEEEEecccc--
Confidence            33333388999999999999999999999999999999999999999      5777899999999999988765432  


Q ss_pred             cccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952          156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD  198 (201)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~  198 (201)
                                |+++....+...|+++++++|+.||+|+++-|+
T Consensus       236 ----------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~  268 (416)
T KOG2765|consen  236 ----------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKR  268 (416)
T ss_pred             ----------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence                      222344556789999999999999999999886

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.19  E-value=5e-10  Score=94.29  Aligned_cols=131  Identities=16%  Similarity=0.098  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~   84 (201)
                      .+.+.+++++++|+.+.+..|...+ +.+|....   +..+++. +.+.... .. ......+.+.+..+.+.++...+.
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~-l~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~t~~~  228 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALA-LWIKYFL-SP-QPAMVFSLPAIIKLLLAAAAMGFG  228 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHH-HHHHHHH-hc-CccccCCHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999754 47877653   2334444 4443333 22 111235667777777777533889


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|.++.+.|+++..
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~------~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP------LSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999999      67778899999999987764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.19  E-value=7.6e-10  Score=95.77  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNRTR---PPLTVSIICKIFGLGLIS   81 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~~   81 (201)
                      +.++++.++++|+.+.+..|...++ ++| ...+++...++++. +.+.....++....   ...+... ..+++.++..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence            5678889999999999999988765 655 46677777777776 66555553432110   1123332 3355556544


Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      .+++.+|++++++.+|++++.+.+++|+++.++++++++|+      ++..+++|.++.+.|+++...
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~------lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS------LYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHHh
Confidence            77888999999999999999999999999999999999999      566678999999999988753

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.14  E-value=2.7e-11  Score=98.87  Aligned_cols=174  Identities=14%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (201)
Q Consensus         7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~   86 (201)
                      .++.-++ ..+....++.+...+  .+|.+..-.|+++-.+. ..|...+....-.-++ ..|  +.+.+.|+.|+....
T Consensus        40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~-g~R--~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPE-GKR--KWLILRGFMGFTGVM  112 (346)
T ss_pred             ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCC-CcE--EEEEeehhhhhhHHH
Confidence            3344444 556666666666554  58999999997665555 5554433111110011 111  335567877755556


Q ss_pred             HHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccC
Q 028952           87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN  166 (201)
Q Consensus        87 ~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  166 (201)
                      ..|++++|++-++|+++.+..|+++.+++++++|||      .++.+.+|.++.+.|++++.   .|.+-+++..   ++
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~------~t~~eaL~s~itl~GVVLIv---RPpFlFG~~t---~g  180 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP------FTKFEALGSLITLLGVVLIV---RPPFLFGDTT---EG  180 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCC------CcHHHHHHHHHhhheEEEEe---cCCcccCCCc---cc
Confidence            677899999999999999999999999999999999      68889999999999999886   2333332221   11


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      ++.+....+..|.+..+.+++.-|.-.|+.+++
T Consensus       181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i  213 (346)
T KOG4510|consen  181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYI  213 (346)
T ss_pred             cccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence            111112334567888888887777666655543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.10  E-value=3.6e-09  Score=89.22  Aligned_cols=137  Identities=15%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSD---FVLIVYSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGL   77 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p---~~~~~~R~~~a~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~   77 (201)
                      .+.++.++++++|+.+.+..|...++ .++   .....+-...+.+. +.+.....+....    ....+.+.+..++++
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            47889999999999999999987543 332   23334444444433 3333222222110    023467788999999


Q ss_pred             HHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           78 GLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        78 gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      |+++ .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|.++.+.|+++...
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~------~~~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER------LTGLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHHHhc
Confidence            9999 89999999999999999999999999999999999999999      677788999999999987643

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.06  E-value=2.1e-09  Score=89.83  Aligned_cols=132  Identities=16%  Similarity=0.029  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~   80 (201)
                      ++....++++++|+.+.+..|...+ +.+|.    ....+.+...++. +.++....++ .. ...+.+.+..+.+.+.+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWP-FLLLYLKRHG-RS-MFPYARQILPSATLGGL  219 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHH-HHHHHHHHhc-cc-hhhhHHHHHHHHHHHHH
Confidence            4566788999999999999987533 24443    2333333333222 2222221111 11 11122333455666666


Q ss_pred             H-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        81 ~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      . .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+      ++..+++|..+.+.|+++
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~------~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER------WYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHhHHh
Confidence            6 88999999999999999999999999999999999999999      677788999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.04  E-value=1.6e-09  Score=91.26  Aligned_cols=137  Identities=18%  Similarity=0.145  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C-------CCHHH-HHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-P-------LTVSI-ICKI   74 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~-~-------~~~~~-~~~~   74 (201)
                      .+.+..++++++|+.+.+..|...++ ++||..+..+.+..+++. +.|+....+...... .       .+... +...
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            47788999999999999999998761 489999999999999998 899876533211000 0       01111 1112


Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        75 ~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +..+... ...+.+++.++++++|+.+++..++.|+++.++++++++|+      ++..+++|.++++.|+++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~------lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK------ISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC------CchhHHHHHHHHHHHHHHHH
Confidence            2333323 44456777899999999999999999999999999999999      56677899999999998765

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.89  E-value=7.8e-08  Score=72.77  Aligned_cols=133  Identities=19%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------C----CCHHH
Q 028952            7 TAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVSI   70 (201)
Q Consensus         7 ~l~l~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~------~----~~~~~   70 (201)
                      .+..+.+.++.+...+..|..+++      +.+|.++..+-...+.++ +.|.....++.+..+      .    .+.+.
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            567889999999999999998876      689999999999999999 999888766543100      0    02344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        71 ~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      +..+...|+++.+.+...+..+++++|...++..+.-.+.+.++++++++|+      ++..++.|+++++.|++.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~------~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP------ITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc------CCHHHHHHHHHHHHHHhe
Confidence            5556666776689999999999999999999999999999999999999999      566778999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.85  E-value=2.9e-07  Score=77.85  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             HHHHHHHhc-CCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 028952           22 TLNKAAMNK-GTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT   98 (201)
Q Consensus        22 ~~~k~~~~~-~~~--p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~   98 (201)
                      +..+...+. +..  |..+++.++....+. -.+.... .+++   +.++..++.....++...++..+.+.+++|++.+
T Consensus        17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p   91 (303)
T PF08449_consen   17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALF-SFILLSL-FKFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYISYP   91 (303)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHH-HHHHHHh-cccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence            444444433 234  889999999998887 6655443 2211   1223333556667766688889999999999999


Q ss_pred             hhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHH
Q 028952           99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG  178 (201)
Q Consensus        99 ~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (201)
                      .-.++-...|+.+++++.+++++|      .+++|++++++..+|+++....+.....          ++.....+...|
T Consensus        92 ~~~~~ks~~~i~vmi~~~l~~~k~------y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------~~~~~~~~~~~G  155 (303)
T PF08449_consen   92 TQIVFKSSKPIPVMILGVLILGKR------YSRRQYLSVLLITIGVAIFTLSDSSSSS----------SSNSSSFSSALG  155 (303)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHhhHheeeeccccccc----------ccccccccchhH
Confidence            999999999999999999999999      6788899999999999987755432110          001111223349


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 028952          179 GLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       179 ~~~~l~aa~~~a~~~il~~~~  199 (201)
                      +++.+++.++-+...+.|+++
T Consensus       156 ~~ll~~sl~~~a~~~~~qe~~  176 (303)
T PF08449_consen  156 IILLLLSLLLDAFTGVYQEKL  176 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986

; GO: 0055085 transmembrane transport

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.80  E-value=1.1e-07  Score=80.22  Aligned_cols=132  Identities=12%  Similarity=0.086  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952            8 AVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (201)
Q Consensus         8 l~l~~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~   86 (201)
                      +..++++++|+.+.+..|...++. .++.....+-..++.+. ..+...  .........++..+..+...|+.+.+++.
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~t~i~~~  228 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIAD--SSTSHMGQNPMSLNLLLIAAGIVTTVPLL  228 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHcc--CCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence            356778999999999999864321 12233334444444433 322211  01000011122233334445554488999


Q ss_pred             HHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        87 ~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +++.++++.+++.++.+.+++|+++.++++++++|+      ++..+++|..+.+.|+.++.
T Consensus       229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~------~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK------PGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999      67778899999988887664

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.79  E-value=2.2e-07  Score=80.26  Aligned_cols=137  Identities=14%  Similarity=0.097  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------CCCCCH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----------RPPLTV   68 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~----------~~~~~~   68 (201)
                      .+.+..++++++|+...+..|..+++      ..++.....+....++++ ++|+....+....          ......
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            47889999999999999999998764      256777777778899998 9998764432110          000111


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952           69 SIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (201)
Q Consensus        69 ~~~~~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll  147 (201)
                      .........+.+. .+.+...+.++++++|..+++..++.|+++.++++++++|+      .+..+++|.++.+.|+++.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~------lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ------VTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC------CchHhHHHHHHHHHHHHHH
Confidence            1111112222222 44444555799999999999999999999999999999999      5667789999999999865


Q ss_pred             e
Q 028952          148 T  148 (201)
Q Consensus       148 ~  148 (201)
                      +
T Consensus       347 s  347 (350)
T PTZ00343        347 S  347 (350)
T ss_pred             h
Confidence            3

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.76  E-value=1.2e-07  Score=79.91  Aligned_cols=129  Identities=12%  Similarity=0.015  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSN---AFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~---~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~   80 (201)
                      .|+.+..+++.+.|+.+.+..|..   +.||.+.++...   .+++.+ +.+..    ++.+ +.. .+........|++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~----~~~~-~~~-~~~~~~~~~~Gi~  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGII-FNLGH----ILAK-PLK-KYAILLNILPGLM  220 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHH-HHHHH----hccc-chH-HHHHHHHHHHHHH
Confidence            579999999999999999999975   378998854444   444444 33322    1112 222 2233334447776


Q ss_pred             HHHHHHHHHHhhc-ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhH----HHHHHHhhhhhhee
Q 028952           81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT  148 (201)
Q Consensus        81 ~~~~~~~~~~gl~-~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~----~g~~l~~~Gv~ll~  148 (201)
                      -..++.+|+.+.+ +.+++.++++.+.+|+.+.+.+++++||+      .+++++    +|.++.+.|+.++.
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~------~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK------KTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC------CCcceeehhHHHHHHHHHHHHHHh
Confidence            6788889999999 99999999999999999999999999999      566667    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.72  E-value=5.5e-07  Score=74.19  Aligned_cols=132  Identities=18%  Similarity=0.166  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-   81 (201)
                      ..+.+..+.++++|+.+.+..|... + .++..... +.+...... ..+...  ....  ...+.+.+......|+++ 
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~  225 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLFFL--SGFG--APILSRAWLLLLYLGVFST  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHHHh--cccc--ccCCHHHHHHHHHHHHHHH
Confidence            3678889999999999999999876 3 67777776 444422222 222211  1111  234577788888999998 


Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ...+.+++.++++.+++.++.+..++|+++.++++++++|+      ++..+++|..+.+.|+.+..
T Consensus       226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~------~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEP------LSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999      67778899999999998764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.53  E-value=3.1e-06  Score=72.52  Aligned_cols=140  Identities=14%  Similarity=0.020  Sum_probs=108.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHH
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-PPLTVSIICKIFGLGLIS   81 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~~   81 (201)
                      +.++.++++.++.+||.+.+.-+...++ .|+.++...=.+++.++ ..+.....+++... .+.+.+....+ ....++
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~-v~~~~~  242 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLL-VGYALC  242 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHH-HHHHHH
Confidence            4678999999999999999999998876 89999999988999988 88877776765431 12344443322 222333


Q ss_pred             -HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952           82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (201)
Q Consensus        82 -~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~  151 (201)
                       ...+.+....+++++|+...+=.-+..+++.++..++++|+      +++..++|.++.++|.++....+
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~------~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYK------FSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcc------ccHHHHHHHHHHHHHhheEEccC
Confidence             56666778899999998777777788899999999999999      56677899999999998876443

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.50  E-value=2.3e-06  Score=69.76  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV   84 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~   84 (201)
                      +..+.+.+..+|+.+-+..|.+-+. .+-..-+..-+.+++++ .+|+..-..  .. .-.+++.+..-+..|+++ .+.
T Consensus       149 Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~a--g~-~l~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         149 GVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQA--GP-ALFSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             HHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhc--ch-hhcChHHHHHHHHHHHHhcccc
Confidence            5667889999999999999988544 56677788889999999 999865421  11 234666667777888999 999


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~  145 (201)
                      +.+...+++..++..-+++.+++|.+..+.++++++|+      ++..|++|+...+++.+
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~------ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET------LTLIQWLAIAAVIAASA  278 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999      56667788888877764

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.50  E-value=2.7e-06  Score=69.98  Aligned_cols=125  Identities=15%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952           66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (201)
Q Consensus        66 ~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~  145 (201)
                      .++|+...+.+-+++-.+.+.+.+.++++++|+.-.++.++-.++++++.++++|+|      .+++||+++++.+.|+.
T Consensus        12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~------ls~~qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR------LSRRQWLALFLLVAGVV   85 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc------cchhhHHHHHHHHHHHh
Confidence            356777778888887788999999999999999999999999999999999999999      56777899999999998


Q ss_pred             heeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          146 TVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       146 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      +....+....+.. .  ..+.+...+..+...|.+.++.++++=++--+..+|+
T Consensus        86 lv~~~~~~~~~~~-~--~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~  136 (244)
T PF04142_consen   86 LVQLSSSQSSDNS-S--SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKL  136 (244)
T ss_pred             eeecCCccccccc-c--ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8764332210000 0  0000001123456899999999999999988888765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.43  E-value=2.7e-06  Score=61.69  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=59.4

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ..++.+ .+.+.++..++++.|.+.+-.+.++.|+++.++++++++||      ++.+|++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~------ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP------VSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHh
Confidence            334466 78899999999999999999999999999999999999999      56677899999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.25  E-value=2.4e-05  Score=58.22  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV   84 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~   84 (201)
                      ++++++.+.++=+...++.|...++ .++.+.... . ...+.     . .  .       +.   ....+.|+++ .++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-----~-~--~-------~p---~~~i~lgl~~~~la   61 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-----A-F--G-------LA---LRAVLLGLAGYALS   61 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-----H-H--h-------cc---HHHHHHHHHHHHHH
Confidence            6778888888888889999998875 544432221 1 11111     0 0  1       01   2246788888 899


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHH--HHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~--~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +.+|..++++.+++.+.-+.+..|+++.+.++.  +++|++      +..|++|+.+.++|++++.
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l------s~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF------SLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999988888888887774  799995      5667899999999999875

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.00037  Score=59.52  Aligned_cols=178  Identities=13%  Similarity=0.081  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHhhc--CC-CC------CCCHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT-RP------PLTVSIICK   73 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~i~~l~~~~~~~~~~--~~-~~------~~~~~~~~~   73 (201)
                      -++.++...+.++...+..|..-..+   +.|.+..+.-=++-.++ .....+...|+  ++ ..      ..++++...
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            45677788889999999999986555   55666666666666666 55554443222  11 01      123445556


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCC
Q 028952           74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (201)
Q Consensus        74 ~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~  153 (201)
                      +.+-+++-++.+.+++.++.+.+|+.-.+..++--+.++++..+++++|+      +++||.++++..+|+.++.....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkL------s~~Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKL------SRLQWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHhccCCC
Confidence            66667776777889999999999999999999999999999999999995      566789999999999987622111


Q ss_pred             cccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      . +        ++.+.....+...|...++.+++.-++.-+.-+|+
T Consensus       169 ~-~--------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEki  205 (345)
T KOG2234|consen  169 P-T--------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKI  205 (345)
T ss_pred             C-C--------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0        01112334577899999999998888777665554

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.01  E-value=1.4e-05  Score=63.21  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (201)
                      ++.++.|..+++.++|++++.+....-.|+.+++++.+++|      ....|+++.++++.|++.+.+.+.         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~------~~~~kIlaailAI~GiVmiay~DN---------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR------FMGFKILAAILAIGGIVMIAYADN---------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc------hhhhhHHHHHHHhCcEEEEEeccc---------
Confidence            57789999999999999999999999999999999999999      456788999999999998875432         


Q ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                               +-.+.++|..+++.|+..-|.|=++-|+.
T Consensus       129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~  157 (290)
T KOG4314|consen  129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMF  157 (290)
T ss_pred             ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                     22356899999999999999999988764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.94  E-value=3.2e-05  Score=65.80  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             HHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 028952           21 STLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT   98 (201)
Q Consensus        21 ~~~~k~~~~--~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~   98 (201)
                      ....|..++  ..--|..++..+...+.+. +.........+.. +..++..+..++-+|++..+.-.+-+.+++|.+.+
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs  110 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS  110 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence            345677777  3234899999977777776 5443332112111 22234456777788887788888889999999999


Q ss_pred             hhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHH
Q 028952           99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG  178 (201)
Q Consensus        99 ~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (201)
                      ..-.+=.++|+++.++.+++.+|+.+      +...+.++..+.|+.+.+..                    +..-...|
T Consensus       111 F~q~iKa~~P~~tvl~~~~~~~~~~s------~~~~lsL~piv~GV~ias~~--------------------e~~fn~~G  164 (316)
T KOG1441|consen  111 FYQTIKALMPPFTVLLSVLLLGKTYS------SMTYLSLLPIVFGVAIASVT--------------------ELSFNLFG  164 (316)
T ss_pred             HHHHHHhhcchhHHHHHHHHhCCCCc------ceEEEEEEEeeeeEEEeeec--------------------cccccHHH
Confidence            99999999999999999999999954      44557788888888776532                    22245789


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 028952          179 GLVLAAGSFFLSLLYIVQLDLN  200 (201)
Q Consensus       179 ~~~~l~aa~~~a~~~il~~~~~  200 (201)
                      ...++.+.+..+.-.|++|++.
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll  186 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLL  186 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998864

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.89  E-value=3.6e-07  Score=74.58  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028952           12 AVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYV   90 (201)
Q Consensus        12 ~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~   90 (201)
                      ++.++=+.++.-+..+ +.|++ |..=++.-+..-+++ ..|+..++. + . .+..|++   .++++++-.=++.+-..
T Consensus        26 LSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~-~-~-~~~~~~h---Yilla~~DVEaNy~vV~   97 (336)
T KOG2766|consen   26 LSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRR-K-Y-IKAKWRH---YILLAFVDVEANYFVVK   97 (336)
T ss_pred             HHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhh-H-H-HHHHHHH---hhheeEEeecccEEEee
Confidence            3334444444444443 34444 777778888887887 777776622 1 1 2233444   55666555566667778


Q ss_pred             hhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCC
Q 028952           91 GIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS  170 (201)
Q Consensus        91 gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~  170 (201)
                      |.|||+-+.+..+-+-.-..+.++.++++|.|      ..+.|+.|+++|+.|+..+.+.+-..            .+..
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktr------Yrlmki~gV~iCi~GvvmvV~sDV~a------------gd~a  159 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTR------YRLMKISGVVICIVGVVMVVFSDVHA------------GDRA  159 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHH------HhhheeeeEEeEecceEEEEEeeecc------------cccc
Confidence            99999999999998876667888899999999      67788999999999999887654221            1123


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH
Q 028952          171 PQKNWIIGGLVLAAGSFFLSLL  192 (201)
Q Consensus       171 ~~~~~~~G~~~~l~aa~~~a~~  192 (201)
                      ++.+-.+||.+++.++=+||.-
T Consensus       160 ggsnp~~GD~lvi~GATlYaVS  181 (336)
T KOG2766|consen  160 GGSNPVKGDFLVIAGATLYAVS  181 (336)
T ss_pred             CCCCCccCcEEEEecceeeeec
Confidence            4456678888888888887753

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.86  E-value=0.00048  Score=57.32  Aligned_cols=117  Identities=12%  Similarity=0.015  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        68 ~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      .+.+..-++.|++-.+.|..++.+.++.+.+++--+.. +.=+.+.++++++++|.=+.+.+  ..-.+++++.++|+++
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            46767777777777999999999999999999999987 55556888999999998433221  1234577888899987


Q ss_pred             eeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD  198 (201)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~  198 (201)
                      -+..++.+.            ..+++.+...|.+.++++++.|..|.+..+-
T Consensus       120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            654332210            0112346678999999999999999988653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.81  E-value=0.00046  Score=56.68  Aligned_cols=102  Identities=13%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Q 028952            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFI---YYRNRTRPP-LTVSIICKIFGLGLISCCV   84 (201)
Q Consensus         9 ~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~---~~~~~~~~~-~~~~~~~~~~~~gl~~~~~   84 (201)
                      ..++++++|+.+.+..|...+  .++.+....     ... +.|....   ......... ...++|..+...|++..++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~  221 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTP  221 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence            567889999999999998643  233332221     122 2222211   111111011 1234778888888766889


Q ss_pred             HHHHHHhhcccCcchhhhhcccchHHHHHHHHHH
Q 028952           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS  118 (201)
Q Consensus        85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~  118 (201)
                      +.+++.|+++.+++.++.+.+++|+++.+++.+.
T Consensus       222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.72  E-value=0.00055  Score=56.95  Aligned_cols=132  Identities=12%  Similarity=0.001  Sum_probs=92.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC   82 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~   82 (201)
                      ..|.++.++++.+.|..+..+.|..   +.||.+...-+.+.-.+. -..+.... +  + +..+++.++. ...|++-.
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~-~--~-~~~~k~~~~n-il~G~~w~  206 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFS-K--K-PFFEKKSWKN-ILTGLIWG  206 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhcc-c--c-cccccchHHh-hHHHHHHH
Confidence            3568999999999999999998874   378887776554443333 33332221 1  1 2223344343 45666667


Q ss_pred             HHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (201)
Q Consensus        83 ~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~  145 (201)
                      ..+.+++.+.+..+.+.+=.+.++.+++..+.+.+++||+=+.|.+  ....+|.++.+.|.+
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            8888999999999999999999999999999999999999332221  234566666666664

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.69  E-value=0.001  Score=56.25  Aligned_cols=136  Identities=19%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHH--HhhcCC-C--CCCCHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRT-R--PPLTVSIICKIFGLGL   79 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~gl   79 (201)
                      +++.++++.++-|...+..+...++ +.+|.+..++-..++.++ ..+....  .+.... .  .....+.+..++...+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            7889999999999999999988854 688999999999999988 7766555  211111 0  0112334456666666


Q ss_pred             HHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      .+...+.+.+.-.++.+|...+++..+--+++.+++.++++++      .+..++.|+++.+.|..+-.
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~------~~~~~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP------LSPLQWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc------CChHHHHHHHHhHHHHHHHH
Confidence            6677777778889999999999999999999999999999999      45667899999999987643

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.47  E-value=0.0021  Score=55.38  Aligned_cols=177  Identities=11%  Similarity=0.029  Sum_probs=113.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--HHhhcC--CCCCCCHHHHHHHHHH
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRNR--TRPPLTVSIICKIFGL   77 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~i~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~   77 (201)
                      -..+++..++++++||+.++-.|.. ++ . +++.... -.+++.+  +.|+..  ...+.-  .....+.+.+..-++.
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w-~wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KK-W-SWETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CC-C-chhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            4568899999999999999999983 33 2 3332211 1112222  223211  111110  0023456666666677


Q ss_pred             HHHHHHHHHHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhc---chhhhchhhhHHHHHHHhhhhhheeeecCC
Q 028952           78 GLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (201)
Q Consensus        78 gl~~~~~~~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~---~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~  153 (201)
                      |++-...|..++.++++.+.+.+--+.. +.-+...++..++++|=-   +.+  -...-.+|++++++|+++...-...
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7766889999999999999999888865 777888888888887642   211  2344688999999999887641110


Q ss_pred             cccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 028952          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (201)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  193 (201)
                      . +  +.    +.++..++.+..+|.++++.|.+.+++|.
T Consensus       158 k-~--~~----~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 K-E--RK----MGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             c-c--cc----cccccccccchHhHHHHHHHHHHHHHHHH
Confidence            0 0  00    00000233567899999999999999998

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.25  E-value=0.011  Score=49.48  Aligned_cols=128  Identities=9%  Similarity=-0.013  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028952           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCLY   89 (201)
Q Consensus        11 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~~~~~~~~~~   89 (201)
                      +.-++.||.+...=|..   ++|+.+-.+.-...-... -+.+..+.+...+ ...-+.+.+..+...|.+..++-.++.
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~  229 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence            45567888888887764   378888777777765555 4443333332221 012356677888889998899999999


Q ss_pred             HhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        90 ~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      .|.+.++-+..+++.+.+|....+++.++++|++      +..|..+-++.-.|.++..
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~------~~~~~~~F~~IW~aL~l~~  282 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPF------DSDQLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999995      5566777777777776543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.24  E-value=0.011  Score=49.87  Aligned_cols=129  Identities=18%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHH
Q 028952           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIIC-KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF  110 (201)
Q Consensus        34 p~~~~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~~~-~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~  110 (201)
                      |+..+...++.=..+ -.......+++..  +...+|++.. ++.-.|+..++-..+.+++++|++.+.-+..=+..++|
T Consensus        45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence            888888777665544 3322222222211  1245666544 55566666678888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHH
Q 028952          111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL  189 (201)
Q Consensus       111 ~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~  189 (201)
                      +.+++.++.-||.+|      .-..-+.+..+|+.+.+ .+++.                   -...|..++..|+++-
T Consensus       124 IllFs~if~lEk~~w------~L~l~v~lI~~Glflft-~KsTq-------------------f~i~Gf~lv~~aS~~s  176 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKSTQ-------------------FNIEGFFLVLAASLLS  176 (349)
T ss_pred             HHHHHHHHHhHHHHH------HHHHHHHHHhhheeEEE-ecccc-------------------eeehhHHHHHHHHHhh
Confidence            999999999999543      34455555566666554 44331                   2356777777776653

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.052  Score=45.99  Aligned_cols=151  Identities=13%  Similarity=0.039  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 028952           19 GSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSS   96 (201)
Q Consensus        19 ~~~~~~k~~~~~~~~p~~~~~--~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~   96 (201)
                      ...++.|.++.+.=-|..+..  ++++...+. +...-.  .|--+.+..+++..+..+-..++-.+....-..+++|.+
T Consensus        26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~ln  102 (314)
T KOG1444|consen   26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKR--LGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLN  102 (314)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH--hceeecCCcChHHHHHHccHHHHHHHHHHHccccccccC
Confidence            344566777765212444444  787777666 443221  121112456788877777777776666667778999999


Q ss_pred             cchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchH
Q 028952           97 PTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWI  176 (201)
Q Consensus        97 a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (201)
                      ...-+++=+..|+++++.-..+++.+      +++.-+.++....+|.......+.                    .-..
T Consensus       103 Vpm~tv~kn~tii~~ai~E~lf~~~~------~~~~v~~Sv~~m~~~s~~~~~~d~--------------------sf~~  156 (314)
T KOG1444|consen  103 VPMFTVFKNLTIILTAIGEVLFFGKR------PSNKVWASVFAMIIGSVAAAFTDL--------------------SFNL  156 (314)
T ss_pred             chHHHHHhhchHHHHHHhHHhhcCcC------chhhHHHHHHHHHHHHHhhccccc--------------------eecc
Confidence            99999999999999999999999866      677778888888888876553221                    1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 028952          177 IGGLVLAAGSFFLSLLYIVQLD  198 (201)
Q Consensus       177 ~G~~~~l~aa~~~a~~~il~~~  198 (201)
                      .|-.+.+...++-+.+.+..|+
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk  178 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKK  178 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999988776

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.17  E-value=0.0062  Score=52.63  Aligned_cols=142  Identities=13%  Similarity=0.085  Sum_probs=106.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHH
Q 028952            3 SVGVTAVMVAVECLEVGSSTLNKAAMNK---GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIICKIFGL   77 (201)
Q Consensus         3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~   77 (201)
                      ...+.++.+.+++.||.+.++.|.-.++   ..|--.+..+-.++..++ ++|...+...-..  ..-.+..+...++..
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            3567889999999999999999987643   256666667777777777 8876655333221  112234444567788


Q ss_pred             HHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952           78 GLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK  151 (201)
Q Consensus        78 gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~  151 (201)
                      ++++ ++.-++|.+|.-.++|-.+++=+.+.-..+++...++.+.+      ++...++|....+.|-+.+...+
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH------PSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhheeccc
Confidence            9999 99999999999999999988888755446667677665556      88999999999999998887544

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.05  E-value=0.0023  Score=54.57  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHH-HHHHHHhhcCC---CC-CCCHHHHHHHH
Q 028952            4 VGVTAVMVAVECLEVGSSTLNKAAM---NKGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNRT---RP-PLTVSIICKIF   75 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~i~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~~   75 (201)
                      ..+.+...++.+..+...++.|..+   ++.+|+..+..+.--++.+. ++ |+....+....   .. ..+... ....
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~  239 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LILL  239 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHHH
Confidence            4578888999999999999999998   33589999999999999998 88 88766443221   11 223333 3334


Q ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        76 ~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +.+++..+.|...|+.+++++|-.-++....==.++...++++++|++      +..+.+|..+++.|+.+-.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pv------t~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPV------TFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCC------chhhHHHHHHHHHHHHHHH
Confidence            444544888899999999999988888876655556667788888895      5667899999999998754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.04  E-value=0.027  Score=48.67  Aligned_cols=145  Identities=14%  Similarity=0.025  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHhhc-CCC-CCC----C
Q 028952            4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRN-RTR-PPL----T   67 (201)
Q Consensus         4 ~~~~l~l~~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~i~~l~~~~~~~~~~-~~~-~~~----~   67 (201)
                      .|+.+.++++.+.++.+.       +..+.+.+.|.+|.....-.+.   ++..+.-..+..+..++ +.. ...    +
T Consensus       173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~  252 (345)
T PRK13499        173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA  252 (345)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence            578899999999999988       7777765667888876666665   44444122222321111 110 011    2


Q ss_pred             HHH-HHHH---HHHHHHHHHHHHHHHHhhcccCcchhhh---hc-ccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHH
Q 028952           68 VSI-ICKI---FGLGLISCCVQTCLYVGIGYSSPTLSSA---IV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (201)
Q Consensus        68 ~~~-~~~~---~~~gl~~~~~~~~~~~gl~~~~a~~asi---l~-~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l  139 (201)
                      ++. ++..   .+.|++-...+.+|..|-+..+.+.+.+   +. .+..++..+.+. ++||+=+-.++.-+..++|+++
T Consensus       253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence            111 2332   3334333677888999998887666655   66 555577788777 5899854222245777899999


Q ss_pred             Hhhhhhheee
Q 028952          140 SIAGALTVTL  149 (201)
Q Consensus       140 ~~~Gv~ll~~  149 (201)
                      .+.|.+++..
T Consensus       332 iI~g~~lig~  341 (345)
T PRK13499        332 IILAANIVGL  341 (345)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.00  E-value=0.014  Score=48.83  Aligned_cols=161  Identities=13%  Similarity=0.154  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------CCCCHHHHHHHHH
Q 028952           18 VGSSTLNKAAMN---KGTS----DFVLIVYSNAFAAIFILLPSTFIYYRNRTR--------------PPLTVSIICKIFG   76 (201)
Q Consensus        18 g~~~~~~k~~~~---~~~~----p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~   76 (201)
                      ..|.+.+|-+-+   +|.|    |+..+..-|+.=..+ +..+.+++.|...+              ++.+.   + ++.
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p---~-lfl   90 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP---V-LFL   90 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc---c-eec
Confidence            467777786642   2222    555555555555566 66655554332110              01122   1 122


Q ss_pred             HHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcc
Q 028952           77 LGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (201)
Q Consensus        77 ~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~  155 (201)
                      .=.++ .....+++.|+.+|+|+.--.+-...-+|+.+++.-+++.++      +.+||+|+.....|++.+...+-. .
T Consensus        91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti------~~~qWl~i~fv~lGlviVg~~d~~-~  163 (372)
T KOG3912|consen   91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTI------TGRQWLGILFVSLGLVIVGSLDVH-L  163 (372)
T ss_pred             ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhccc------chhhHHHHHHHHhhhheeeeeecc-c
Confidence            23344 777888899999999998888888888999999999999995      555679999999999887644210 0


Q ss_pred             cccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952          156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL  199 (201)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~  199 (201)
                      .  +       ++..+..+...||++.+.+-+--|.-.+.-+|.
T Consensus       164 ~--~-------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~  198 (372)
T KOG3912|consen  164 V--T-------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQ  198 (372)
T ss_pred             c--c-------CCccccccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence            0  0       011223566899999999988888777665543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.99  E-value=0.0024  Score=46.35  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 028952           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLY   89 (201)
Q Consensus        11 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~   89 (201)
                      ++++++||...++.|.+.+. .++..-.. |..- -.. .+    .  +       +++-   .  ..+.- -.....|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~-~~~-~L----l--~-------n~~y---~--ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQ-EIK-FL----L--L-------NPKY---I--IPFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHH-HHH-HH----H--H-------hHHH---H--HHHHHHHHHHHHHH
Confidence            45689999999999998754 66554442 4222 222 11    0  1       1221   1  22222 56677888


Q ss_pred             HhhcccCcchhhhhc-ccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        90 ~gl~~~~a~~asil~-~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      ..+...+-+.+.-+. .+.=+++.+.++++.+|.      .+++.++|+.+.+.|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~------~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEV------ISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcc------cchhHHHHHHHHHcCeee
Confidence            999999999999997 477788888887766666      456678999999999865

Many members are annotated as potential transmembrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.66  E-value=0.0012  Score=54.77  Aligned_cols=133  Identities=10%  Similarity=0.062  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~   85 (201)
                      +....+.+.+.-+..+++.|..-+ ..+......+=.+++.+. .+..........  ....+|++..+..+|++|.+.|
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~-s~I~~~~ig~~~--lP~cgkdr~l~~~lGvfgfigQ  267 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVV-SLIGCASIGAVQ--LPHCGKDRWLFVNLGVFGFIGQ  267 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHH-HHHHHhhcccee--cCccccceEEEEEehhhhhHHH
Confidence            344555566666677777776533 366666566655665555 333222112222  2345777788888999999999


Q ss_pred             HHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        86 ~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      .+...|+|.-.|+..++..++--+++.+.-+++++|-      |+...+.|.++.+...+...
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~------Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW------PTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC------ChHHHhhceeeeehhHHHHH
Confidence            9999999999999999999999999999999999998      66666788877776665544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.53  E-value=0.084  Score=39.63  Aligned_cols=132  Identities=16%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952            7 TAVMVAVECLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (201)
Q Consensus         7 ~l~l~~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~   85 (201)
                      .+..+.+.++-+....+.-..-+. . +|+.-++.-+..+.+. +..+....+++.. +..+... .+...-|++|...-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHH
Confidence            344555555555555554444333 4 4999999999999998 7776665443211 1111111 23344677777777


Q ss_pred             HHHHHhhcccCcchhhhhcccchH-HHHHHHHH--HHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           86 TCLYVGIGYSSPTLSSAIVDLTPA-FTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        86 ~~~~~gl~~~~a~~asil~~~~Pv-~~~l~a~~--~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      .......+..+++.+..+.-..=+ ...++..+  +..||    +..+..|++|+.+.++|+.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPK----RPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence            788889999999988887654333 33444442  22233    22678889999999999863

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.40  E-value=0.012  Score=43.14  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             HHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           77 LGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        77 ~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      ..+.+ .+++.++..++++.+.+.+=.+ ....-+.+.+.++++++|+      .+..|++|+.+.++|++.+..
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~------~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES------LSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHhhc
Confidence            34444 7888899999999998877555 3467778889999999999      456678999999999988753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.36  E-value=0.097  Score=37.74  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll  147 (201)
                      .+++.+...++|++|.+.+=-+ ...--+.+.+.++++++|+      ++..|++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~------~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR------LNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHh
Confidence            6777888889999988776433 3466677888899999999      5667789999999999865

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.18  E-value=0.014  Score=49.43  Aligned_cols=71  Identities=20%  Similarity=0.348  Sum_probs=61.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        73 ~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      ...+.|+.. .+.....+.++.+.|++..+-+..+.-++..+++..+++||      .+++.+.|..+++.|..++..
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~------~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK------LTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc------chHhHHhhHHHHHhhheeeEE
Confidence            345666666 77778889999999999999999999999999999999999      567778999999999987754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.17  E-value=0.018  Score=41.62  Aligned_cols=65  Identities=22%  Similarity=0.255  Sum_probs=50.4

Q ss_pred             HHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        78 gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      .+.+ .+++.++..++++.|.+.+=-+ ....-+.+.+.++++++|+      .+..|++|+.+.++|++.+.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~------~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHh
Confidence            3444 6777778888888887776444 3456667788999999999      56667899999999999875

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.96  E-value=0.03  Score=40.08  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             HHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           79 LIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        79 l~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +.+ ..++.+...++|++|.+.+=.+ ...--+.+.+.++++++|+      .+..|++|+.+.+.|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~------~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGES------ASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHhhh
Confidence            344 6778888899999988776444 4466777889999999999      45667899999999998764

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.95  E-value=0.00098  Score=54.49  Aligned_cols=169  Identities=12%  Similarity=0.005  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~   85 (201)
                      .++..++-++.||+...+....   |=+|.+=+.---+.|.++ -+.++++ .+    +..+.+.+.--++.|++-...|
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence            4567788899999987765432   345665554444444444 3333333 22    4556666565556666658889


Q ss_pred             HHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL  164 (201)
Q Consensus        86 ~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~  164 (201)
                      ..++.++++.+.+++.-+.+ +.-+-+.+++++.++|-=+.-+.  ..-.+++++.+.|+++-+..+..+.         
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~nk---------  142 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNNK---------  142 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccccc---------
Confidence            99999999999999999987 56667788899999987332111  1223456677778766543222110         


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 028952          165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQL  197 (201)
Q Consensus       165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~  197 (201)
                         +.++..+.-.|...++.|++.|-.|.++..
T Consensus       143 ---~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~  172 (288)
T COG4975         143 ---EEENPSNLKKGIVILLISTLGYVGYVVLFQ  172 (288)
T ss_pred             ---cccChHhhhhheeeeeeeccceeeeEeeec
Confidence               012334567788888888888887776543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.89  E-value=0.029  Score=40.17  Aligned_cols=61  Identities=16%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhcccCcchhh-hhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           82 CCVQTCLYVGIGYSSPTLSS-AIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~as-il~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      ..++.+...++|++|.+.|= +-...--+.+.+.++++++|++      +..|++|+.+.++|++.+.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l------~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL------SLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC------CHHHHHHHHHHHHHHHHhh
Confidence            67788888999999987763 3345677778899999999994      6667899999999998764

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.039  Score=46.09  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=89.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccc
Q 028952           33 SDFVLIVYSNAFAAIFILLPSTFIYYRN----RTR-PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT  107 (201)
Q Consensus        33 ~p~~~~~~R~~~a~i~~l~~~~~~~~~~----~~~-~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~  107 (201)
                      .|...+.++.+....+ .+.+.....+-    ..+ ..++.+..+.+.-+.+.-.+...+-+..++|.+.+.--+=-.+.
T Consensus        60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence            3888888988887776 66554332221    111 12455554544444443333334556788888776555555677


Q ss_pred             hHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHH
Q 028952          108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF  187 (201)
Q Consensus       108 Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~  187 (201)
                      -+|+.++.++++|+|      -+..-..+-.+.+.|     +.-|.+-            ++..+.-.+.|.++.++|++
T Consensus       139 tvFtVlLtyvllkqk------Ts~~~~~~C~lIi~G-----F~lGvdq------------E~~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQK------TSFFALGCCLLIILG-----FGLGVDQ------------EGSTGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hhHHHHhHHhhcccc------cccccceeehhheeh-----heecccc------------ccccCccchhhhHHHHHHHH
Confidence            789999999999999      232223333333333     3323211            12334557899999999999


Q ss_pred             HHHHHHHHHhhccC
Q 028952          188 FLSLLYIVQLDLNY  201 (201)
Q Consensus       188 ~~a~~~il~~~~~~  201 (201)
                      +-|...+..||.+|
T Consensus       196 ~vAlnaiytkk~l~  209 (347)
T KOG1442|consen  196 AVALNAIYTKKVLP  209 (347)
T ss_pred             HHHHHHHhhheecc
Confidence            99999999998765

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.67  E-value=0.045  Score=44.78  Aligned_cols=98  Identities=12%  Similarity=0.039  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  161 (201)
                      .+++...+.++||.+=....+=-+.-|+=++++++++.+++      .+++|...++..+.|+++.....+...      
T Consensus        96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~Ks------Y~w~kY~cVL~IV~GValFmYK~~Kv~------  163 (337)
T KOG1580|consen   96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKS------YHWRKYCCVLMIVVGVALFMYKENKVG------  163 (337)
T ss_pred             HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccc------ccHHHHHHHHHHHHHHHHhhccccccC------
Confidence            67778889999999877777777888999999999999999      677788999999999987654322211      


Q ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD  198 (201)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~  198 (201)
                             +.++.....|.+++++|--.=+..-..|.+
T Consensus       164 -------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr  193 (337)
T KOG1580|consen  164 -------GAEDKTFGFGELLLILSLAMDGLTGSIQDR  193 (337)
T ss_pred             -------CCcccccchHHHHHHHHHHhcccchhHHHH
Confidence                   234455678888888876554444444443

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.55  E-value=0.037  Score=38.61  Aligned_cols=52  Identities=13%  Similarity=0.040  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhcccCcchh-hhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHH
Q 028952           82 CCVQTCLYVGIGYSSPTLS-SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (201)
Q Consensus        82 ~~~~~~~~~gl~~~~a~~a-sil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l  139 (201)
                      .....++..++++.+.+.+ ++......+.+.+.+..+++|++|      ..|++|+.+
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s------~~~~~gi~l   92 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS------LSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHhheee
Confidence            6778899999999999988 445568889999999999999955      455677764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.17  E-value=0.52  Score=35.91  Aligned_cols=143  Identities=13%  Similarity=0.034  Sum_probs=77.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952            1 MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (201)
Q Consensus         1 ~~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~   80 (201)
                      |......+..+.+.++-.....+.-..-+..-+|+.-.+..+..+.++ +..+....++... .....+.-.+.++-|++
T Consensus         1 ~~~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~l   78 (150)
T COG3238           1 MMMYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLL   78 (150)
T ss_pred             CccHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccch
Confidence            344455566666666666555554444343235999999999999988 7776666222211 11111111234445666


Q ss_pred             HHHHHHHHHHhhcccCcchhhhhcccch-HHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952           81 SCCVQTCLYVGIGYSSPTLSSAIVDLTP-AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (201)
Q Consensus        81 ~~~~~~~~~~gl~~~~a~~asil~~~~P-v~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll  147 (201)
                      |...-..-.......+++.+..+.-..= +...++.. +.--..+ ++.++..+.+|+++.++|++++
T Consensus        79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~-fG~~g~~-~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDH-FGWFGVP-KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHh-hcccCCC-cCCCCHHHHHHHHHHHHHHHHh
Confidence            5444444455666666665555433222 22223222 1111111 2337889999999999996554

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=0.49  Score=40.20  Aligned_cols=137  Identities=14%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-----TRPPLTVSIICKIFGLG   78 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g   78 (201)
                      .+|..+....+.=+...+..|...+. +.+-+++.++-.+++... +....++.+...     .....+...+..+.+.+
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            46777778888888888888887764 577888999999998877 655554433211     00112334456666777


Q ss_pred             HHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        79 l~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +++.+-+++-++..+..++...++.....-..+.+...++++++      .++...+|+.+++.|-+.-.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~------~~~~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKP------FTFLNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCce------echhhhHHHHHHhhhhhHHh
Confidence            77777777888999999998888887555555666666677777      56778899999999987654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.85  E-value=0.46  Score=40.25  Aligned_cols=133  Identities=13%  Similarity=0.097  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-----PPLTVSIICKIFGLG   78 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g   78 (201)
                      .+++++....++=|......+...+. ++++.++.+.-.++.++. -... .+ .+....     .+..++.++-+++.+
T Consensus       172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~-li-~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTY-LI-LQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHh-hh-cCCCCchHHHHHHcChhHHHHHHHHH
Confidence            45666666666666666666555553 688999999999998887 5544 22 222211     123456677788888


Q ss_pred             HHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        79 l~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      ..+++.|.+-+.-++.-++-.-+.+..+-=++..+++.+.++.++      ++.|++|+++.+.|..+
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~------s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPL------SSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCcc------chhhccCeeeehHHHHH
Confidence            888899999999999999988888888888999999999999994      66677889988888764

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=93.60  E-value=0.61  Score=39.13  Aligned_cols=124  Identities=17%  Similarity=0.154  Sum_probs=81.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhh
Q 028952           64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYS-SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIA  142 (201)
Q Consensus        64 ~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~-~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~  142 (201)
                      ++.+.|++......  + +..+..-+.++++- +-..=-++-+-.++-.+++++++.+.|      .+.+|+.++++.-+
T Consensus        60 ~kiplk~Y~i~V~m--F-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~------Ys~~Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDYAITVAM--F-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKR------YSLRQYSSVLMITI  130 (330)
T ss_pred             CCCchhhhheehhe--e-eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccce------eehhhhhhHHhhhh
Confidence            45566665433222  2 33444446777774 434444555678889999999999999      88999999999999


Q ss_pred             hhhheeeecCCcccccCCCccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952          143 GALTVTLYKGPALVSMSSSSNL-HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD  198 (201)
Q Consensus       143 Gv~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~  198 (201)
                      |+++-+..++++.+..+  .+. ++++..+...+.+|..++..+-+.-|.--+.|+.
T Consensus       131 GiiIcTl~s~~d~~~~~--~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~  185 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRSKL--SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET  185 (330)
T ss_pred             hheeEEeecCcchhhhh--cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887766555433210  111 1222334456789999988888887777776654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.44  E-value=0.25  Score=40.52  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952           69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (201)
Q Consensus        69 ~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l  146 (201)
                      ..+..+..+++.+.+.|.+.+.-+++-+|-.-|++..+--.|+.+.++++++.++      +.+||+|.++.+.|...
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npl------s~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPL------SGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHhhh
Confidence            3445566677767889999999999999999999999999999999999999994      56678999999998743

>TIGR00803 nst UDP-galactose transporter

Probab=93.33  E-value=0.51  Score=37.76  Aligned_cols=59  Identities=14%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952           81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (201)
Q Consensus        81 ~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~  145 (201)
                      +...+.+..+-++|.++..-++...+.++++.+++.++++|+      ++..+++|..+.+.|+.
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~------ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK------ISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHeeeE
Confidence            356667788899999999999999999999999999999999      67777899999998875

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.23  E-value=0.0097  Score=48.80  Aligned_cols=131  Identities=15%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028952            8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (201)
Q Consensus         8 l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~   87 (201)
                      ..++.+.+.|-.+.+..+.-.-+|.+..---+.-+.++++. +.      .++.. ++.++..++++ ..|++-...+.+
T Consensus       155 ~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali-~~------~~~~~-~~~~K~t~~ni-i~G~~Wa~GNl~  225 (288)
T COG4975         155 VILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI-LG------FFKME-KRFNKYTWLNI-IPGLIWAIGNLF  225 (288)
T ss_pred             eeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH-Hh------hcccc-cchHHHHHHHH-hhHHHHHhhHHH
Confidence            33334444444444444432212344444444555555554 22      11212 34456665554 567666788889


Q ss_pred             HHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        88 ~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      ++.+-+..+.+.+=.++.+..+...+-+.++++||=|.|.+  ...+.|+++.+.|++++..
T Consensus       226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg~  285 (288)
T COG4975         226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhhe
Confidence            99999988888888888888899999999999999443332  2345677788888776653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=0.095  Score=44.59  Aligned_cols=70  Identities=19%  Similarity=0.342  Sum_probs=59.8

Q ss_pred             HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        73 ~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      +..+.|++- .+....-|.+.-+.|++..+-+.++.-++.++++..++|||+      +..-.+|.++|++|..++.
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl------~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKL------NLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHH------HHhhhhheeEEecccEEEE
Confidence            455677777 777777788889999999999999999999999999999995      4556799999999988776

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.28  E-value=5.7  Score=33.80  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcc--cchHH
Q 028952           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD--LTPAF  110 (201)
Q Consensus        33 ~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~--~~Pv~  110 (201)
                      +|..+.+.+-+.+.++ -..  ....++..  ....+.|......++.+.+...+.+.+++|.+=..-.+-=+  +.|  
T Consensus        50 ~~~fL~~~q~l~~~~~-s~~--~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP--  122 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLV-SYA--MLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP--  122 (327)
T ss_pred             ccHHHHHHHHHHHHHH-HHH--HHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH--
Confidence            5777788777777766 433  23223222  11233345566777777888899999999997433332222  455  


Q ss_pred             HHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 028952          111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS  190 (201)
Q Consensus       111 ~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a  190 (201)
                      +++++.++.+.|      .+..+.+...+.-.|+.+....+..+ .+.          .....+..+|..++...-+.=+
T Consensus       123 Vmlmg~Lvy~~k------y~~~eYl~~~LIs~GvsiF~l~~~s~-s~~----------~~g~~ns~~G~~Ll~~~L~fDg  185 (327)
T KOG1581|consen  123 VMLMGTLVYGRK------YSSFEYLVAFLISLGVSIFSLFPNSD-SSS----------KSGRENSPIGILLLFGYLLFDG  185 (327)
T ss_pred             HHHHHHHHhcCc------cCcHHHHHHHHHHhheeeEEEecCCC-Ccc----------ccCCCCchHhHHHHHHHHHHHh
Confidence            566778888888      56677888888888887665543221 000          1122356777777766555444


Q ss_pred             HHHHHHhh
Q 028952          191 LLYIVQLD  198 (201)
Q Consensus       191 ~~~il~~~  198 (201)
                      +.--.|.+
T Consensus       186 fTn~tQd~  193 (327)
T KOG1581|consen  186 FTNATQDS  193 (327)
T ss_pred             hHHhHHHH
Confidence            44434433

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=91.22  E-value=6.3  Score=33.66  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CC----CCHHHH
Q 028952            6 VTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PP----LTVSII   71 (201)
Q Consensus         6 ~~l~l~~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~------~~----~~~~~~   71 (201)
                      +......+.++=|.-+.+++..++++    -+|.+....-.-...+. ++|.....|.....      ..    .-.+..
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~  243 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRVI  243 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHHH
Confidence            55666677777777777777777542    24777776666666777 77776665643210      00    113333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952           72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (201)
Q Consensus        72 ~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll  147 (201)
                      ..+...|...++--...+.=++.|+.-..++..-.-=+.+.++|.++.+|++      +-..+.|..+|..|+..=
T Consensus       244 g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~l------s~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  244 GLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQL------SLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHHHHh
Confidence            4444444444333344455566666655555555566788899999999995      566789999999999764

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=89.99  E-value=2.4  Score=35.21  Aligned_cols=176  Identities=10%  Similarity=-0.000  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (201)
Q Consensus         7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~   86 (201)
                      ++..+++.+++|++++-.|.. +. -|++.+-.+-.....+. -+.....  +. . ++...    .-.+-|.+-...+.
T Consensus         2 ~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~-g~~v~~~--~~-~-p~f~p----~amlgG~lW~~gN~   70 (254)
T PF07857_consen    2 YIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLV-GLVVNLI--LG-F-PPFYP----WAMLGGALWATGNI   70 (254)
T ss_pred             chhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHH-HHHHHHh--cC-C-Cccee----HHHhhhhhhhcCce
Confidence            567889999999999999974 44 57766555544433333 2222222  21 1 22221    11222333345555


Q ss_pred             HHHHhhcccCcchhhhhccc-chHHHHHHHHH-HHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCccccc---CCC
Q 028952           87 CLYVGIGYSSPTLSSAIVDL-TPAFTFILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM---SSS  161 (201)
Q Consensus        87 ~~~~gl~~~~a~~asil~~~-~Pv~~~l~a~~-~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~---~~~  161 (201)
                      +-.-.++..+-+.+-.+-+. .-+.....+.+ +++++-+.-. ......+|++++++|..+..+-+.+.-.+.   +.+
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            55667777777777666554 33333333332 2333222111 367889999999999988776554331111   110


Q ss_pred             c-------cccCC------CCCCC-----CchHHHHHHHHHHHHHHHHHHH
Q 028952          162 S-------NLHNE------LRSPQ-----KNWIIGGLVLAAGSFFLSLLYI  194 (201)
Q Consensus       162 ~-------~~~~~------~~~~~-----~~~~~G~~~~l~aa~~~a~~~i  194 (201)
                      +       +.+++      ++..+     .+...|..+++.+.+.|+...+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fv  200 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFV  200 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccc
Confidence            0       00011      01111     2478999999999999987543

The region concerned is approximately 280 residues long.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=87.72  E-value=12  Score=31.70  Aligned_cols=136  Identities=11%  Similarity=0.129  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHH----HHHHHhh-cCC-CCCCCHHHHHH----
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFILLP----STFIYYR-NRT-RPPLTVSIICK----   73 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~i~~l~~----~~~~~~~-~~~-~~~~~~~~~~~----   73 (201)
                      .+.++++++.++-+.-++.=..-+ ..+.+|.+.+.+..+++.++ +..    +.++... ... .++-.+.+|..    
T Consensus       176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~-~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~  254 (372)
T KOG3912|consen  176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI-LSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA  254 (372)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH-HHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence            367888999999999888764444 44789999999999998554 333    3332111 110 02222334331    


Q ss_pred             -----HHHHHHHH-HHHHHHHH-Hh---hcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhh
Q 028952           74 -----IFGLGLIS-CCVQTCLY-VG---IGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAG  143 (201)
Q Consensus        74 -----~~~~gl~~-~~~~~~~~-~g---l~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~G  143 (201)
                           .+...+.+ .....+++ .|   -++.++++=.++-..-..+..+++.....|+      ....|+.|-++...|
T Consensus       255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~------f~llqilGFliLi~G  328 (372)
T KOG3912|consen  255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY------FHLLQILGFLILIMG  328 (372)
T ss_pred             hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH------HHHHHHHHHHHHHHH
Confidence                 22233333 23222222 23   3455777777777777778888888899999      577889999999999


Q ss_pred             hhhe
Q 028952          144 ALTV  147 (201)
Q Consensus       144 v~ll  147 (201)
                      .++-
T Consensus       329 i~lY  332 (372)
T KOG3912|consen  329 IILY  332 (372)
T ss_pred             HHHH
Confidence            8764

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.40  E-value=3.6  Score=33.70  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952           18 VGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR---PPLTVSIICKIFGLGLISCCVQTCLYVGIG   93 (201)
Q Consensus        18 g~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~   93 (201)
                      +..-...|...+. +....+-.++..+++..+ ++.+....+.+...   ...+...+..+++.|+..+...++--|.++
T Consensus       168 aafVL~mrkri~ltNf~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvr  246 (309)
T COG5070         168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVR  246 (309)
T ss_pred             HHHHHHHHHhhcccccchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEe
Confidence            3334444544432 356788999999999998 88877776654320   112333445677777766666677778888


Q ss_pred             ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (201)
Q Consensus        94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~  148 (201)
                      -++++.-+..-.+.-.-..+.+.++++|++      ++.++..+++++...++-.
T Consensus       247 VtSSTtySMvGALNKlp~alaGlvffdap~------nf~si~sillGflsg~iYa  295 (309)
T COG5070         247 VTSSTTYSMVGALNKLPIALAGLVFFDAPV------NFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             ehhhhHHHHHHHhhhChHHHhhhhhcCCch------hHHHHHHHHHHHHHHHHHH
Confidence            898888888888877778888899999994      5667888888887665544

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=86.80  E-value=13  Score=32.18  Aligned_cols=176  Identities=11%  Similarity=0.039  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHHHhh-cCC---CCCCCHHHHHHHHHHHH
Q 028952            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYR-NRT---RPPLTVSIICKIFGLGL   79 (201)
Q Consensus         5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~gl   79 (201)
                      .+.+...++.++=|+.++-.|..-+  .+ ++... ...+++.+  ..|+..-.-. +..   ....+...+....+.|+
T Consensus         7 ~Gii~h~iGg~~~~sfy~P~kkvk~--Ws-WEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    7 LGIIFHAIGGFASGSFYVPFKKVKG--WS-WESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHhhhhccchhhcCC--cc-HHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            4667777888888888888887532  33 33333 34444443  4665443111 100   01234445566666777


Q ss_pred             HHHHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHh--hcchhhhchhhhHHHHHHHhhhhhheeeecCCccc
Q 028952           80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRME--KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV  156 (201)
Q Consensus        80 ~~~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E--~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~  156 (201)
                      +-......|-.+++|++-+...-+ .-+.-++..++-.++.++  .+. .+.-....++|++++++|+++...-...   
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~-~~~~g~~vL~Gv~v~LiGIai~g~AG~~---  157 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELL-ATPSGQIVLLGVAVCLIGIAICGKAGSM---  157 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccc-cCCCchhhhhHHHHHHHHHHHHhHHHHh---
Confidence            666677788889999886554333 234444444443333221  110 0113567899999999999987532111   


Q ss_pred             ccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028952          157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYI  194 (201)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i  194 (201)
                        +++  ... ...++.+.-+|.++++.|.+.-|++-+
T Consensus       158 --Ke~--~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~  190 (344)
T PF06379_consen  158 --KEK--ELG-EEAKEFNFKKGLIIAVLSGVMSACFNF  190 (344)
T ss_pred             --hhh--hhc-cchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence              000  000 112345678999999999887777654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.37
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.34

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.37  E-value=3.9e-07  Score=67.44  Aligned_cols=68  Identities=22%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      .+++++ .+++.+++.++++.+++.+..+ .++.|+++.++++++++|+      ++..+++|+.+.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~------ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence            567777 8999999999999999999888 8999999999999999999      566678999999999998764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.34  E-value=9.8e-07  Score=62.82  Aligned_cols=68  Identities=22%  Similarity=0.223  Sum_probs=60.5

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (201)
Q Consensus        76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~  149 (201)
                      ..++++ .+++.++..++++.+.+.+..+ ..+.|+++.+.++++++|+      ++..|++|+.+.+.|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~------~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence            466666 8889999999999999999888 7999999999999999999      566778999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00