Citrus Sinensis ID: 028953

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
ccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccEEEcccccEEcccEEEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHcccEEEccccccccccHHHHHHHHHHHHHHHcccccccc
ccccccccEEEHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHccEEEEccccccccccHHHHcccccccccccHEEcccccEEEEEcccccccccEEEEEcccccccccccccHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHcccccccc
MGSNCGYHVVYSGTVAGAREaffhgvpsvsisydwvggksnvndytLAAEACLPIINAILAEIrnqtypercflnidlptdipnnkgykltkqgTSIFKMGWRRVtsemqggkmlstmtmdtdsavtietdtstpleedLLFRREvrgahiadpdtdwqFLREGYitvtpigalsnadmESLLYFkdwlpvvaehesssal
MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIdlptdipnnkgykltkqgtsifkmgwRRVTSEMQGGKMLSTMTMDTDSAVtietdtstpleedLLFRREVRGahiadpdtdwqfLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
****CGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT*******************************EDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVA********
MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVV*********
MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVV*********
**SNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADMESLLYFKDWLPVVAEHESSSAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query201 2.2.26 [Sep-21-2011]
Q7VJA8264 5'-nucleotidase SurE OS=H yes no 0.467 0.356 0.401 1e-09
B2VA83259 5'-nucleotidase SurE OS=S yes no 0.641 0.498 0.314 1e-08
Q15P28248 5'-nucleotidase SurE OS=P yes no 0.751 0.608 0.273 2e-08
Q30QB8264 5'-nucleotidase SurE OS=S yes no 0.776 0.590 0.269 3e-08
P57955246 5'-nucleotidase SurE OS=P yes no 0.736 0.601 0.277 3e-08
Q30YV9259 5'-nucleotidase SurE OS=D yes no 0.442 0.343 0.37 4e-08
A6LS61253 5'-nucleotidase SurE OS=C yes no 0.666 0.529 0.264 4e-08
Q7M8G1259 5'-nucleotidase SurE OS=W yes no 0.467 0.362 0.336 5e-08
Q5QUC6250 5'-nucleotidase SurE OS=I yes no 0.741 0.596 0.303 5e-08
Q899M5249 5'-nucleotidase SurE OS=C yes no 0.666 0.538 0.251 7e-08
>sp|Q7VJA8|SURE_HELHP 5'-nucleotidase SurE OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 1   MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN-DYTLAAEACLPIINAI 59
           +GSN G  + YSGT AGA E    GVPS++IS        + + D++LA E    I   I
Sbjct: 96  LGSNMGEDITYSGTAAGAMEGCIQGVPSIAISQLMPDKNCSKHFDFSLAKECIYKITQLI 155

Query: 60  LAEIRNQTYP--ERCFLNIDLPTDIPNN-KGYKLTKQGTSIF 98
            A    + +P  ER FLNI++P   P   KGYK+T+ G  I+
Sbjct: 156 FA----KGFPLGERKFLNINIPHIKPKECKGYKITQMGYRIY 193
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|B2VA83|SURE_SULSY 5'-nucleotidase SurE OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q15P28|SURE_PSEA6 5'-nucleotidase SurE OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q30QB8|SURE_SULDN 5'-nucleotidase SurE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|P57955|SURE_PASMU 5'-nucleotidase SurE OS=Pasteurella multocida (strain Pm70) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q30YV9|SURE_DESDG 5'-nucleotidase SurE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6LS61|SURE_CLOB8 5'-nucleotidase SurE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q7M8G1|SURE_WOLSU 5'-nucleotidase SurE OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5QUC6|SURE_IDILO 5'-nucleotidase SurE OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q899M5|SURE_CLOTE 5'-nucleotidase SurE OS=Clostridium tetani (strain Massachusetts / E88) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
255552207 306 5'-nucleotidase surE, putative [Ricinus 1.0 0.656 0.686 8e-77
225432652 308 PREDICTED: 5'-nucleotidase surE [Vitis v 1.0 0.652 0.681 3e-76
449504179 307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.990 0.648 0.621 1e-69
449432702 307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.990 0.648 0.621 2e-68
357444243 306 5'-nucleotidase surE [Medicago truncatul 0.995 0.653 0.594 1e-67
356497458 303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.990 0.656 0.605 2e-66
356541721 303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.990 0.656 0.595 3e-66
357480867 307 5'-nucleotidase surE [Medicago truncatul 0.985 0.644 0.613 8e-66
297804776 316 hypothetical protein ARALYDRAFT_493398 [ 0.990 0.629 0.598 5e-64
18414342 315 5'-nucleotidase [Arabidopsis thaliana] g 0.990 0.631 0.598 2e-63
>gi|255552207|ref|XP_002517148.1| 5'-nucleotidase surE, putative [Ricinus communis] gi|223543783|gb|EEF45311.1| 5'-nucleotidase surE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 160/201 (79%)

Query: 1   MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAIL 60
           MGSNCGYH+VYSGTVAGAREAFF GVPS+SISYDWVGGKS + D+ L AEAC PII+AIL
Sbjct: 106 MGSNCGYHIVYSGTVAGAREAFFFGVPSISISYDWVGGKSTIQDFALGAEACEPIISAIL 165

Query: 61  AEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTM 120
            EI+N+TY   CFLNIDLPT++ N+KGYKLT+QG SIFKMGWR+V S M+G KMLSTMTM
Sbjct: 166 VEIKNRTYQSGCFLNIDLPTNVANHKGYKLTRQGRSIFKMGWRQVHSGMEGRKMLSTMTM 225

Query: 121 DTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPIGALSNADME 180
           DT SAV  E D S   +E + FRREVRGA + D D+D +FL+EGYITVTP+ ALS A+  
Sbjct: 226 DTKSAVETEVDESNESQEQMWFRREVRGAQVDDEDSDHKFLQEGYITVTPLSALSRAENN 285

Query: 181 SLLYFKDWLPVVAEHESSSAL 201
            L YF DWLP V +  S SAL
Sbjct: 286 CLGYFVDWLPGVVDRSSPSAL 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432652|ref|XP_002282293.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297737043|emb|CBI26244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449504179|ref|XP_004162274.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432702|ref|XP_004134138.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357444243|ref|XP_003592399.1| 5'-nucleotidase surE [Medicago truncatula] gi|355481447|gb|AES62650.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|356497458|ref|XP_003517577.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|356541721|ref|XP_003539322.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|357480867|ref|XP_003610719.1| 5'-nucleotidase surE [Medicago truncatula] gi|355512054|gb|AES93677.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804776|ref|XP_002870272.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] gi|297316108|gb|EFH46531.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18414342|ref|NP_567449.1| 5'-nucleotidase [Arabidopsis thaliana] gi|21593317|gb|AAM65266.1| unknown [Arabidopsis thaliana] gi|27311791|gb|AAO00861.1| expressed protein [Arabidopsis thaliana] gi|30984528|gb|AAP42727.1| At4g14930 [Arabidopsis thaliana] gi|332658124|gb|AEE83524.1| 5'-nucleotidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
TAIR|locus:2129510315 AT4G14930 "AT4G14930" [Arabido 0.990 0.631 0.598 4.3e-61
TAIR|locus:2032652385 AT1G72880 "AT1G72880" [Arabido 0.552 0.288 0.423 3.6e-26
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.452 0.352 0.333 5.9e-09
UNIPROTKB|Q487E6251 surE "5'-nucleotidase SurE" [C 0.412 0.330 0.385 4.3e-07
TIGR_CMR|CPS_1075251 CPS_1075 "acid phosphatase Sur 0.412 0.330 0.385 4.3e-07
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.402 0.320 0.377 1.7e-06
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.661 0.503 0.297 2e-06
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.422 0.324 0.336 3.6e-06
TIGR_CMR|APH_0524235 APH_0524 "stationary-phase sur 0.417 0.357 0.319 8.9e-06
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.422 0.329 0.354 1.5e-05
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 122/204 (59%), Positives = 156/204 (76%)

Query:     1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD--WVGGKSNVNDYTLAAEACLPIINA 58
             +GSNCGY++VYSGTVAGAREAF + VPS SISYD  W  G+ N ND+ L+A+ACLPIIN 
Sbjct:   111 VGSNCGYNIVYSGTVAGAREAFLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIING 170

Query:    59 ILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTM 118
             IL  I+N+T+P +CFLNIDLPTDI N+KGYKLT+QG S+ KMGWR+V  E QG KMLSTM
Sbjct:   171 ILGAIKNKTHPMQCFLNIDLPTDIANHKGYKLTRQGKSMGKMGWRQVEEEAQGPKMLSTM 230

Query:   119 TMDTDSAV-TIETDTSTPLEEDL-LFRREVRGAHIADPDTDWQFLREGYITVTPIGALSN 176
             TMDT+S V + E DTS    +D  LF+RE+R A I++  +D  +L+EG+ITVTP+GALS 
Sbjct:   231 TMDTESGVVSSENDTSAHAGKDSRLFKRELR-ASISEEGSDSHYLKEGFITVTPLGALSQ 289

Query:   177 ADMESLLYFKDWLPVVAEHESSSA 200
              D++   Y+K+WLP +     SS+
Sbjct:   290 TDVDCQNYYKEWLPKITNQSCSSS 313
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q487E6 surE "5'-nucleotidase SurE" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1075 CPS_1075 "acid phosphatase SurE" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0524 APH_0524 "stationary-phase survival protein SurE" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!
3rd Layer3.1.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
pfam01975188 pfam01975, SurE, Survival protein SurE 1e-22
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 6e-22
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 2e-19
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 4e-12
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 1e-11
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 4e-11
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 4e-08
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 1e-04
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score = 89.9 bits (224), Expect = 1e-22
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 1   MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAIL 60
            G+N G  V+YSGTV  A EA   G+PS+++S          +D+  AA+    ++  ++
Sbjct: 93  HGANLGTDVLYSGTVGAAMEAALLGIPSIAVSLAG--NSEEKDDFETAAK----LVRRLV 146

Query: 61  AEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFK 99
            ++     P    LN+++P   P+  KG K+T+ G   + 
Sbjct: 147 EKLLKNGLPPGTLLNVNIPDLPPSEIKGIKVTRLGRRRYA 186

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 99.94
>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-42  Score=291.28  Aligned_cols=153  Identities=32%  Similarity=0.408  Sum_probs=132.1

Q ss_pred             CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953            1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT   80 (201)
Q Consensus         1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~   80 (201)
                      +|.|+|.||+||||||||+||+++||||||||+...    ...+|+.+++++.+++++++    +..+|++++||||||.
T Consensus        96 ~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~----~~~~p~~~~LNVN~P~  167 (253)
T PRK13935         96 RGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD----FSLLPPFTALNINVPS  167 (253)
T ss_pred             cCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH----hcCCCCCcEEEEEeCc
Confidence            699999999999999999999999999999998521    12379999999999999877    4578999999999999


Q ss_pred             CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953           81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ  159 (201)
Q Consensus        81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~  159 (201)
                      ++ .+++|+|+|+||++.|.+.|+++                          .||+|+.|||+.+.... ...+++||++
T Consensus       168 ~~~~~~~gik~tr~g~~~~~~~~~~~--------------------------~dp~g~~~yw~~~~~~~-~~~~~~tD~~  220 (253)
T PRK13935        168 VPYGEIKGWKLTRQSRRRYNDYFEER--------------------------VDPFGNKYYWMMGEIIE-DDPDDDVDYK  220 (253)
T ss_pred             CChhhcCCeEEeeCCCcccCCceEEE--------------------------ECCCCCeEEEECCCccC-CCCCCCchHH
Confidence            87 67899999999999998777553                          47899999999854322 1236799999


Q ss_pred             HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953          160 FLREGYITVTPIGALSNADMESLLYFKDWL  189 (201)
Q Consensus       160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~  189 (201)
                      ++++||||||||+ +++|+++.++.|++|+
T Consensus       221 al~~G~ISVTPL~-~d~T~~~~l~~l~~~~  249 (253)
T PRK13935        221 AVREGYVSVTPIH-VFLTNEECLKKLKEVY  249 (253)
T ss_pred             HHHCCcEEEecCC-cCCcCHHHHHHHHHHh
Confidence            9999999999999 8999999999999886

>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 8e-09
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 7e-06
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 2e-04
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 3e-04
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  + YSGTV+GA E    G+PS++ S     G+ N+  +   A+ C+ I+  +L 
Sbjct: 96  GPNLGEDITYSGTVSGAMEGRILGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL- 150
Query: 62  EIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 99
              N+  PE  +LN+++P       KG K+T+QG   +K
Sbjct: 151 ---NEGIPEDTYLNVNIPNLRYEEIKGIKVTRQGKRAYK 186
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 1e-22
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 1e-22
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 3e-22
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 4e-22
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 1e-21
1l5x_A280 SurviVal protein E; structural genomics, putative 5e-18
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 201
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 8e-13
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 2e-11
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 63.2 bits (153), Expect = 8e-13
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 38/200 (19%)

Query: 1   MGSNCGYHVVY-SGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 59
           +G N    V+  SGT+  A +A   G+P+++ S         +N+          + +  
Sbjct: 94  LGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTA 153

Query: 60  LAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMT 119
              ++N        ++++ P  +      KL K     +                     
Sbjct: 154 SYVLKNGMPQGVDVISVNFPRRLGRGVRAKLVKAAKLRYAQQVVERVD------------ 201

Query: 120 MDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTD-WQFLREGYITVTPI------- 171
                               + +          +P+TD +  L+EG I +TP+       
Sbjct: 202 -----------------PRGVRYYWLYGRDLAPEPETDVYVVLKEGGIAITPLTLNLNAV 244

Query: 172 GALSNADMESLLYFKDWLPV 191
            A    DM+SL    +++  
Sbjct: 245 DAHREVDMDSLNRMVEYINA 264
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.8e-41  Score=283.95  Aligned_cols=151  Identities=26%  Similarity=0.350  Sum_probs=130.6

Q ss_pred             CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953            1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT   80 (201)
Q Consensus         1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~   80 (201)
                      +|.|+|.||+||||||||+||+++||||||||+...    ...+|+.+++++.+++++++    ...+|+..+||||||.
T Consensus        96 ~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l~----~~~~p~~~~lNVN~P~  167 (247)
T d1j9ja_          96 RGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD----FSLLDPFTMLNINVPA  167 (247)
T ss_dssp             ESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC----GGGSCTTCEEEEEECS
T ss_pred             CCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHHH----hcCCcccccccCCCCh
Confidence            599999999999999999999999999999999743    24589999999999998876    4568999999999997


Q ss_pred             CCCCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHHH
Q 028953           81 DIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQF  160 (201)
Q Consensus        81 ~~~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~a  160 (201)
                      +  +++|+++|++|++.|...+++.                          .+++|+.|||+.+.... ....++||++|
T Consensus       168 ~--~~kG~k~t~~g~~~~~~~~~~~--------------------------~~~~g~~~y~~~~~~~~-~~~~~~tD~~a  218 (247)
T d1j9ja_         168 G--EIKGWRFTRQSRRRWNDYFEER--------------------------VSPFGEKYYWMMGEVIE-DDDRDDVDYKA  218 (247)
T ss_dssp             S--CCCEEEECBCCCCEEEEEEEEE--------------------------ECTTSCEEEEEEEEEEC-CCCCSSBHHHH
T ss_pred             h--hccCceeeeeccccccccceee--------------------------eCCCCCeeEEeccCccC-CCCCCChHHHH
Confidence            4  5899999999999887655432                          46888999999875443 23478999999


Q ss_pred             HHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953          161 LREGYITVTPIGALSNADMESLLYFKDWL  189 (201)
Q Consensus       161 l~~G~ISVTPL~~~~~t~~~~l~~l~~~~  189 (201)
                      |++||||||||+ .++|+++.|++|+++|
T Consensus       219 l~~GyISVTPL~-~dlT~~~~l~~L~~~f  246 (247)
T d1j9ja_         219 VREGYVSITPIH-PFLTNEQCLKKLREVY  246 (247)
T ss_dssp             HHTTEEEEEEEC-SCCCCHHHHHHHHHHC
T ss_pred             HHCCeEEEeecC-cCCcCHHHHHHHHHhh
Confidence            999999999999 8999999999999876
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure