Citrus Sinensis ID: 028956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
cccccccccccEEEEcccccEEEEccccccEEEEEEEEEccccccEEEEEEccccccEEEEccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEEccccccHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
cccEEEEcccccccccccccccEcccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcEEEEHHHHHHHHHHHHHHHHcccccc
mvpvrflplhdhfypngavsslilpisstfpvrsaikikntskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelfdeQKDQTAAEQILRVVflnperpepALEKLKRQLADADAAVAarkkppedtgpriigeglvIDEWKERRERYLARQQVEGVDSV
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVaarkkppedtgpriigeglvidewKERRERYlarqqvegvdsv
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLadadaavaaRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
***VRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL************************************IIGEGLVIDEWKE*****************
**PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVE*************R*KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF*************************************************************E*****
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQ***************EDTGPRIIGEGLVIDEWKERRERYL***********
*VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query201 2.2.26 [Sep-21-2011]
Q8VYN2295 Vesicle-associated protei yes no 0.895 0.610 0.805 3e-79
Q1ECE0266 Vesicle-associated protei no no 0.905 0.684 0.737 2e-73
Q8LPQ7287 Vesicle-associated protei no no 0.900 0.630 0.699 6e-62
Q9LVU1220 Vesicle-associated protei no no 0.527 0.481 0.318 6e-07
P40075244 Vesicle-associated membra yes no 0.482 0.397 0.351 4e-05
Q8VZ95256 Vesicle-associated protei no no 0.557 0.437 0.264 7e-05
B9DHD7 386 Vesicle-associated protei no no 0.507 0.264 0.318 0.0002
Q84WW5239 Vesicle-associated protei no no 0.487 0.410 0.289 0.0002
Q9SHC8239 Vesicle-associated protei no no 0.567 0.476 0.267 0.0003
A5GFS8243 Vesicle-associated membra yes no 0.487 0.403 0.310 0.0007
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1 Back     alignment and function desciption
 Score =  294 bits (752), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 159/180 (88%)

Query: 22  LILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 81
           L  P      VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 116 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 175

Query: 82  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 141
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  
Sbjct: 176 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSN 235

Query: 142 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 201
           PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 236 PALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
224116236235 predicted protein [Populus trichocarpa] 0.905 0.774 0.851 9e-83
255567425281 structural molecule, putative [Ricinus c 0.905 0.647 0.835 3e-80
297804004300 vesicle-associated membrane family prote 0.895 0.6 0.811 2e-78
18415696295 vesicle-associated membrane family prote 0.895 0.610 0.805 1e-77
334186769 314 vesicle-associated membrane family prote 0.845 0.541 0.841 2e-77
224076792233 predicted protein [Populus trichocarpa] 0.905 0.781 0.846 1e-76
359495700264 PREDICTED: vesicle-associated protein 4- 0.945 0.719 0.741 1e-75
388503260266 unknown [Lotus japonicus] 0.905 0.684 0.747 1e-75
357144664235 PREDICTED: vesicle-associated protein 4- 0.905 0.774 0.791 6e-73
147801604278 hypothetical protein VITISV_011094 [Viti 0.945 0.683 0.695 2e-72
>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 155/182 (85%), Positives = 163/182 (89%)

Query: 20  SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
           S L  P      VRSAI+IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFK
Sbjct: 54  SKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFK 113

Query: 80  FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 139
           FVELPENNEKPM QKS+ KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRV+FL+PER
Sbjct: 114 FVELPENNEKPMEQKSKVKFKIMSLKVKGVMDYVPELFDEQKDQVAIEQILRVIFLDPER 173

Query: 140 PEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 199
           P PALEKLKRQLADADAAV ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQ EGVD
Sbjct: 174 PSPALEKLKRQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQGEGVD 233

Query: 200 SV 201
           SV
Sbjct: 234 SV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334186769|ref|NP_001190786.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659055|gb|AEE84455.1| vesicle-associated membrane family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224076792|ref|XP_002304997.1| predicted protein [Populus trichocarpa] gi|222847961|gb|EEE85508.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388503260|gb|AFK39696.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357144664|ref|XP_003573371.1| PREDICTED: vesicle-associated protein 4-2-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|147801604|emb|CAN74544.1| hypothetical protein VITISV_011094 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
UNIPROTKB|Q6YZ10233 P0473D02.15 "cDNA clone:001-01 0.900 0.776 0.745 1e-68
TAIR|locus:2166582266 MAMI "membrane-associated mann 0.905 0.684 0.710 3.6e-66
TAIR|locus:2138401287 AT4G05060 [Arabidopsis thalian 0.895 0.627 0.670 9.3e-59
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.527 0.481 0.318 6.7e-09
UNIPROTKB|Q5F419151 VAPA "Uncharacterized protein" 0.547 0.728 0.286 1.1e-07
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.487 0.401 0.355 2.8e-06
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.691 0.487 0.255 6e-06
UNIPROTKB|F1P206250 VAPA "Uncharacterized protein" 0.502 0.404 0.301 2.7e-05
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.517 0.435 0.280 3.1e-05
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.542 0.450 0.289 3.2e-05
UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 135/181 (74%), Positives = 149/181 (82%)

Query:    20 SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
             S L  P      VRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IATVFK
Sbjct:    52 SKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFK 111

Query:    80 FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 139
             FVE PENNEKP+ QK + KFKI+S+KVK  ++YVPELFDEQK+Q A EQILRVVFL+ ER
Sbjct:   112 FVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAER 171

Query:   140 PEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 199
               P ++KLKRQL         RKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQ+EGVD
Sbjct:   172 QTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQIEGVD 231

Query:   200 S 200
             S
Sbjct:   232 S 232
GO:0009739 "response to gibberellin stimulus" evidence=IMP
TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|F1P206 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYN2VAP42_ARATHNo assigned EC number0.80550.89550.6101yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 4e-20
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 2e-05
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score = 80.9 bits (200), Expect = 4e-20
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 29  TFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 88
                S + + N S   VAFK +TT PK   +RP   IL PGES+  T+ +    P + E
Sbjct: 17  DKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESVTITITR---QPFDKE 73

Query: 89  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 123
               +K  DKF I   +   D     E F      
Sbjct: 74  PGDPKK--DKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
KOG0439218 consensus VAMP-associated protein involved in inos 99.97
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.95
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.9
PF14874102 PapD-like: Flagellar-associated PapD-like 98.53
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.69
PF14646426 MYCBPAP: MYCBP-associated protein family 94.31
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 92.58
PRK09918230 putative fimbrial chaperone protein; Provisional 92.23
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 91.96
PRK11385236 putativi pili assembly chaperone; Provisional 88.65
PRK15249253 fimbrial chaperone protein StbB; Provisional 86.81
PRK09926246 putative chaperone protein EcpD; Provisional 86.54
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 85.86
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 83.99
PRK15211229 fimbrial chaperone protein PefD; Provisional 83.02
PF03173164 CHB_HEX: Putative carbohydrate binding domain; Int 82.45
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 82.2
PRK15295226 fimbrial assembly chaperone SthB; Provisional 81.89
PRK15299227 fimbrial chaperone protein StiB; Provisional 81.71
PRK15246233 fimbrial assembly chaperone StbE; Provisional 81.39
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.97  E-value=1.2e-30  Score=219.71  Aligned_cols=184  Identities=34%  Similarity=0.464  Sum_probs=157.5

Q ss_pred             eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028956           10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK   89 (201)
Q Consensus        10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~   89 (201)
                      .|.++|.+   +|.|.+++.+++++.|+|+|+++.++|||||||+|++||||||.|+|.||+++.|.|.+   +| ....
T Consensus         8 ~l~i~P~~---~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~-~~~~   80 (218)
T KOG0439|consen    8 LLEIEPSD---ELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QP-FEKS   80 (218)
T ss_pred             ccccCCCc---eEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---cc-CccC
Confidence            57889974   99999999999999999999999999999999999999999999999999999999998   67 3445


Q ss_pred             CCCCCCCCeEEEEEEEeCCC-CCChhHhhhccC--CCcceeEEeEEEEeCCCCCCchhHHH---HhhhhhHHHHHHHhcC
Q 028956           90 PMYQKSRDKFKIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKK  163 (201)
Q Consensus        90 p~~~~~kDKFlVqs~~v~~~-~d~~~~lwk~~~--~~~i~e~kLrV~f~~p~~ps~~~e~l---~~~l~~a~~~~~~~~~  163 (201)
                      |.+++|+|||+||++.++.+ .....++|+..+  +..+.+.+++|.|+.|..+....++.   ..+..+.++...+...
T Consensus        81 P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (218)
T KOG0439|consen   81 PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKE  160 (218)
T ss_pred             chhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccc
Confidence            78889999999999999976 567899999988  78899999999999887777666555   5566666677777666


Q ss_pred             CCCCC---CCceeeeeeehhHH------------------HHHHHHHHHHhhhcccCC
Q 028956          164 PPEDT---GPRIIGEGLVIDEW------------------KERRERYLARQQVEGVDS  200 (201)
Q Consensus       164 ~~~~~---~~~~~~~~~~~~~~------------------~~~r~~~~~~~~~~~~~~  200 (201)
                      .....   .+...++.+++++|                  +++++++++.+|.+...|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (218)
T KOG0439|consen  161 ASDGEVCVKSKEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS  218 (218)
T ss_pred             cCcccccchhhhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence            65543   46677899999999                  889999999999876543

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3 Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 8e-05
2rr3_A130 Solution Structure Of The Complex Between Human Vap 2e-04
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 5e-04
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 7e-04
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
           V + +K+ N +  +V FK +TTAP+   +RP   I+  G S+  +V     L   +  P 
Sbjct: 28  VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 82
Query: 92  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
            +KS+ KF + SM    D   +  ++ E K +   +  LR VF
Sbjct: 83  NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2cri_A147 Vesicle-associated membrane protein-associated pro 1e-24
1z9l_A128 Vesicle-associated membrane protein-associated pro 6e-23
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 9e-23
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 3e-16
1m1s_A116 WR4; structural genomics, major sperm protein, bio 3e-09
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-06
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
 Score = 93.6 bits (232), Expect = 1e-24
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 20  SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
           S L      T  V + +K++N S   V FK +TTAP+   +RP   I+ PG         
Sbjct: 21  SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSI-----VT 75

Query: 80  FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 139
              + +  +    +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P  
Sbjct: 76  VSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE 135

Query: 140 PEPALEKLK 148
            +   +   
Sbjct: 136 NDKLNDSGP 144
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.97
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.59
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.09
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.03
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.6
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.44
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.43
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 88.86
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 85.24
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 84.9
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 80.82
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 80.06
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.7e-35  Score=235.53  Aligned_cols=126  Identities=25%  Similarity=0.383  Sum_probs=114.1

Q ss_pred             CceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 028956            8 PLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN   87 (201)
Q Consensus         8 p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~   87 (201)
                      ...|.|+|.+   +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+|   ++...
T Consensus        12 ~~~L~i~P~~---~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~   85 (147)
T 2cri_A           12 EQILVLDPPS---DLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDY   85 (147)
T ss_dssp             CCCSEEESSS---EEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCC
T ss_pred             CCeEEECCCC---eEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcC
Confidence            3579999984   99999999999999999999999999999999999999999999999999999999999   77643


Q ss_pred             CCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCCCCC
Q 028956           88 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE  141 (201)
Q Consensus        88 e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~~ps  141 (201)
                      .  ++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..+.
T Consensus        86 ~--p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~~  137 (147)
T 2cri_A           86 D--PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEND  137 (147)
T ss_dssp             C--TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred             C--ccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence            2  457899999999999998877789999999988999999999998665443
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 201
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 3e-20
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 6e-16
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-15
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 4e-13
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (199), Expect = 3e-20
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query: 22  LILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 81
           L      +   ++ I + N +K+ VAFK +TTAP+   ++P  +   PG S+   V    
Sbjct: 27  LYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHG 86

Query: 82  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVP----ELFDEQKDQTAAEQILRVVFLNP 137
            L           ++D+F I++ +++      P    + + E       E  LR   +  
Sbjct: 87  GLT--------VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVES 138

Query: 138 ERP-EPALE 145
            +P    L 
Sbjct: 139 SKPNSLMLS 147
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.97
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.93
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 95.09
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 93.46
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 92.75
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 90.02
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 87.89
d3bwuc284 FimC {Escherichia coli [TaxId: 562]} 80.19
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-32  Score=218.88  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=110.4

Q ss_pred             ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956            9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE   88 (201)
Q Consensus         9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e   88 (201)
                      ..|.|+|.+   +|+|.+++++.++|.|+|+|.++++||||||||+|++|+|||+.|+|.||++++|.|++   ++.   
T Consensus        17 ~lL~i~P~~---~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~---   87 (152)
T d1wica_          17 PLLHISPAE---ELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG---   87 (152)
T ss_dssp             SSBCBBSSS---CBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS---
T ss_pred             CeEEEcCCC---CeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC---
Confidence            369999994   89999999999999999999999999999999999999999999999999999999998   443   


Q ss_pred             CCCCCCCCCeEEEEEEEeCCCCC----ChhHhhhccCCCcceeEEeEEEEeCC-CCCCchhH
Q 028956           89 KPMYQKSRDKFKIISMKVKADVD----YVPELFDEQKDQTAAEQILRVVFLNP-ERPEPALE  145 (201)
Q Consensus        89 ~p~~~~~kDKFlVqs~~v~~~~d----~~~~lwk~~~~~~i~e~kLrV~f~~p-~~ps~~~e  145 (201)
                        ....|+|||+|+++.+++..+    ++.++|++..+..++++||+|+|+.+ .+++++.+
T Consensus        88 --~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~  147 (152)
T d1wica_          88 --LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS  147 (152)
T ss_dssp             --SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred             --CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCCcccc
Confidence              346789999999999986653    36789999888899999999999955 45555543
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d3bwuc2 b.7.2.1 (C:122-205) FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure