Citrus Sinensis ID: 028957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Secondary Structure (PSIPRED)
cccEEEEcccccHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEcccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEcccccHHHHHHHHccccccccccccHHHHccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccHccHHHHHcccccEEEEcccHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEEEcccHHHEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHccccccEEEEEEcccccEEEEEEEEccccccHHHHHHHcccccccccccccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
mtsvlelgcgnsrlseglyndgitaiTCIDLSAVAVEKMQERLLLKGYKEVKVLEadmldlpfsndcfDVVIEKATMEVLFvnsgdpwnpqpeTVTKVMAMLEGVHrvlkpdglfisvsfgqphfrrpffnapqftwsvewitfgdgFHYFFYILRkgkrssadeelsqshdkplvptismfheelegedyifrtnidemd
Flexible Loop (DISEMBL)
mtsvlelgcgNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFvnsgdpwnpQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEElsqshdkplvptismfheelegedyifrtnidemd
Low Complexity Region (SEG)
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Disordered region (IsUnstruct)
******LGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILR************************MFH**LEGEDYIFR*******
Disordered Region (DISOPRED)
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL*LKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL*****************************ELEGEDYIFRTNI****
Disordered Region (DISEMBL)
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG*************DKPLVPTISMFHEELEGEDYIFRTNIDEMD
Disordered Region (DISPRO)
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRS**********DKPLVPTISMFHEELEGEDYIFRTNID*M*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q9VIK9	673	Methyltransferase-like pr	yes	no	0.572	0.170	0.352	4e-13
A5PK19	699	Methyltransferase-like pr	yes	no	0.567	0.163	0.347	4e-12
Q91YR5	698	Methyltransferase-like pr	no	no	0.562	0.161	0.354	5e-12
Q8N6R0	699	Methyltransferase-like pr	no	no	0.572	0.164	0.336	1e-11
Q29LW1	673	Methyltransferase-like pr	yes	no	0.572	0.170	0.344	2e-11
Q80Z60	881	Endothelin-converting enz	no	no	0.482	0.110	0.390	2e-10
Q10711	883	Endothelin-converting enz	no	no	0.482	0.109	0.371	6e-10
O60344	883	Endothelin-converting enz	no	no	0.482	0.109	0.380	8e-10
Q6NTR1	693	Methyltransferase-like pr	N/A	no	0.567	0.164	0.330	2e-09
A5WVX1	690	Methyltransferase-like pr	no	no	0.552	0.160	0.297	1e-06

>sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 7/122 (5%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L LGCGNS+LS  +Y+ G   IT ID+S +AV+KM E L  K   E+K L+ D   + F
Sbjct: 52  ILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLE-LNAKSRPEMKFLQMDATAMTF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            ++ F V ++K T++ LF +       +PET   V    + + R ++  G ++ +S  Q 
Sbjct: 111 PDESFSVSLDKGTLDALFADD------EPETRAVVENYFKEILRTMRNGGRYVGISLLQE 164

Query: 124 HF 125
           H 
Sbjct: 165 HI 166

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 7/121 (5%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL +GCGNS LSE LY+ G   I  ID+S V +++M+ER   +    +  L+ DM  + F
Sbjct: 52  VLVVGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASR-RPRMSFLKMDMTQMEF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  F VV++K T++ +  +       + +T+ +V  ML  V RVL+  G ++ +S  Q 
Sbjct: 111 PDASFQVVLDKGTLDAVLTDE------EEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQA 164

Query: 124 H 124
           H
Sbjct: 165 H 165

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 11/124 (8%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDL 61
           VL +GCGNS LSE LY+ G   I  ID+S V +++M+ER    G +   +  L+ DM  L
Sbjct: 52  VLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKER---NGSRRPHMSFLKMDMTQL 108

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
            F +  F VV++K T++ +  +       +  T+ +V  ML  V RVL+  G ++ +S  
Sbjct: 109 EFPDATFQVVLDKGTLDAVLTDE------EEVTLRQVDRMLAEVGRVLQVGGRYLCISLA 162

Query: 122 QPHF 125
           Q H 
Sbjct: 163 QAHI 166

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 7/122 (5%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL +GCGNS LSE LY+ G   I  ID+S V +++M+E    +   ++  L+ DM  + F
Sbjct: 52  VLVIGCGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATR-RPQMSFLKMDMTQMEF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  F VV++K T++ +  +       + +T+ +V  ML  V RVL+  G ++ +S  Q 
Sbjct: 111 PDASFQVVLDKGTLDAVLTDE------EEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQA 164

Query: 124 HF 125
           H 
Sbjct: 165 HI 166

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 7/122 (5%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L LGCGNS+LS  +Y+     IT ID+S VAV+KM E+   +   ++K L+ D   + F
Sbjct: 52  ILMLGCGNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQ-NARTRPDMKFLQMDATAMTF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            ++ F V ++K T++ LFV+        PET   V    + + R ++  G +  VS  Q 
Sbjct: 111 PDESFSVALDKGTLDALFVDDA------PETKAVVENYFKEILRTMRNGGRYFCVSLLQE 164

Query: 124 HF 125
           H 
Sbjct: 165 HI 166

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
           +L LGCGNS LS  L+  G   +T +D S V V  MQ R     Y  V  L  + +D   
Sbjct: 62  ILVLGCGNSALSYELFLGGFPNVTSVDYSPVVVAAMQVR-----YAHVPSLRWETMDVRA 116

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 105
           L F +  FDVV+EK T++ +     DPWN   E V  V  +L  V
Sbjct: 117 LDFPSGSFDVVLEKGTLDAMLAGEPDPWNVSSEGVHTVDQVLSEV 161

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

EC: 1

>sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 1   MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
           +  +L LGCGNS LS  L+  G   +T +D S+V V  M+ R     Y  V  L  + +D
Sbjct: 59  LDRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMRAR-----YAHVPTLRWETMD 113

Query: 61  ---LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAML 102
              L F +  FDVV+EK T++ L     DPW    E V  V  +L
Sbjct: 114 VRALGFPSGSFDVVLEKGTLDALLTGEQDPWTVSSEGVHTVDQVL 158

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

EC: 1

>sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
           +L LGCGNS LS  L+  G   +T +D S+V V  MQ R     +  V  L  + +D   
Sbjct: 62  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQAR-----HAHVPQLRWETMDVRK 116

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 105
           L F +  FDVV+EK T++ L     DPW    E V  V  +L  V
Sbjct: 117 LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEV 161

Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 7

EC: 1

>sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           V  +GCGNS LSE LY+ G   +T ID+S V + +M ER   +    +     D     F
Sbjct: 52  VFVVGCGNSELSEQLYDAGCQNLTNIDVSEVVIRQMNERNSNR-RPNMTFQVMDATQTTF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            + CF  V++K T++ +  ++        ET  K+M+    + RVL   G F+ VS  Q 
Sbjct: 111 DDSCFQAVLDKGTLDAIMTDTD---KGTLETADKLMSE---IGRVLTCGGRFLCVSLAQA 164

Query: 124 H 124
           H
Sbjct: 165 H 165

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL +GCGNS LSE LY+ G   +T ID+S   V  M +R   +   ++   + D     F
Sbjct: 52  VLVVGCGNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAER-RPDLSFQQLDATQTGF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  F V ++K T++ +            E       ML  V RVL   G ++ ++  Q 
Sbjct: 111 ESGSFQVTLDKGTLDAM---------ASEEDGALAGRMLAEVGRVLAVGGRYVCITLAQE 161

Query: 124 H 124
           H
Sbjct: 162 H 162

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
224080275	252	predicted protein [Populus trichocarpa]	0.975	0.777	0.752	4e-85
225428570	259	PREDICTED: endothelin-converting enzyme	0.970	0.752	0.757	2e-84
255556139	250	S-adenosylmethionine-dependent methyltra	0.960	0.772	0.765	6e-84
297802538	248	hypothetical protein ARALYDRAFT_491230 [	0.965	0.782	0.712	3e-80
42567385	248	S-adenosyl-L-methionine-dependent methyl	0.965	0.782	0.712	4e-80
4455181	197	putative protein [Arabidopsis thaliana]	0.960	0.979	0.710	6e-80
449438466	257	PREDICTED: methyltransferase-like protei	0.980	0.766	0.69	6e-78
449506419	225	PREDICTED: methyltransferase-like protei	0.975	0.871	0.688	6e-78
218185925	247	hypothetical protein OsI_36482 [Oryza sa	0.975	0.793	0.663	3e-73
356538825	248	PREDICTED: endothelin-converting enzyme	0.975	0.790	0.638	7e-73

>gi|224080275|ref|XP_002306079.1| predicted protein [Populus trichocarpa] gi|222849043|gb|EEE86590.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 173/198 (87%), Gaps = 2/198 (1%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +SVLELGCGNS+L E +Y DGIT +TCIDLSAVAVEKMQ+RL  KGYKE+KVLEADMLDL
Sbjct: 55  SSVLELGCGNSQLCEEMYRDGITEVTCIDLSAVAVEKMQKRLEAKGYKEIKVLEADMLDL 114

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF+++CFDVVIEK TM+VLFVNSGDPWNP+PETV +V AMLEGVHRVLKPDG+FIS+SFG
Sbjct: 115 PFNDECFDVVIEKGTMDVLFVNSGDPWNPRPETVAQVKAMLEGVHRVLKPDGIFISISFG 174

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRRP F+AP FTWSVEW TFGDGFHYFF +LRK  R S+ +E S   ++  +P+I +
Sbjct: 175 QPHFRRPLFDAPDFTWSVEWSTFGDGFHYFFNVLRKASRRSSSDEGSSGKNE--IPSICL 232

Query: 182 FHEELEGEDYIFRTNIDE 199
           F EELEGED+IFRTNIDE
Sbjct: 233 FQEELEGEDFIFRTNIDE 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428570|ref|XP_002281086.1| PREDICTED: endothelin-converting enzyme 2 [Vitis vinifera] gi|297741411|emb|CBI32542.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 171/198 (86%), Gaps = 3/198 (1%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           SVLE+GCGNS+LSE LY  GIT ITCIDLSA+AVEKMQ+RLL KGYKE+KVLEADMLDLP
Sbjct: 65  SVLEIGCGNSQLSEELYKGGITEITCIDLSAIAVEKMQKRLLSKGYKEIKVLEADMLDLP 124

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           FSN+CFDVVIEK TM+VLFV+SGDPWNP PETV K MA L+GVHRVLKPDG+FIS+SFGQ
Sbjct: 125 FSNECFDVVIEKGTMDVLFVDSGDPWNPLPETVNKAMATLQGVHRVLKPDGVFISISFGQ 184

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 182
           PHFRRP F AP FTWS EW TFGDGFHYFFY+L+KG+R+S     SQ  +   +P++S+F
Sbjct: 185 PHFRRPLFEAPDFTWSFEWSTFGDGFHYFFYLLKKGRRTSNGGGPSQRIE---MPSMSLF 241

Query: 183 HEELEGEDYIFRTNIDEM 200
            +ELE EDYIFRTNIDEM
Sbjct: 242 QDELESEDYIFRTNIDEM 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556139|ref|XP_002519104.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223541767|gb|EEF43315.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/196 (76%), Positives = 169/196 (86%), Gaps = 3/196 (1%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +SVLELGCGNS+L E +Y DGIT ITCIDLSAVAVEKMQ+RL  KGY E+KVLEADMLDL
Sbjct: 58  SSVLELGCGNSQLCEEMYKDGITDITCIDLSAVAVEKMQQRLSAKGYNEIKVLEADMLDL 117

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PFS+ CFDVVIEK TM+VLFVNSGDPWNP+P TV +V AML+ VHRVLKPDG+FIS+SFG
Sbjct: 118 PFSDKCFDVVIEKGTMDVLFVNSGDPWNPRPATVKQVKAMLDSVHRVLKPDGIFISISFG 177

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRRP F+AP++TWS+EW TFGDGFHYFFYILRKGKRS  D+E S    K  VP I +
Sbjct: 178 QPHFRRPIFDAPEYTWSLEWKTFGDGFHYFFYILRKGKRSLNDKETS---GKVEVPPIYL 234

Query: 182 FHEELEGEDYIFRTNI 197
           F EELEGED+IFRTNI
Sbjct: 235 FQEELEGEDFIFRTNI 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802538|ref|XP_002869153.1| hypothetical protein ARALYDRAFT_491230 [Arabidopsis lyrata subsp. lyrata] gi|297314989|gb|EFH45412.1| hypothetical protein ARALYDRAFT_491230 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/198 (71%), Positives = 171/198 (86%), Gaps = 4/198 (2%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +SVLELGCGNS+L E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++A+MLDL
Sbjct: 52  SSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLSKGYKEIKVVQANMLDL 111

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF ++ FDVVIEK TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FG
Sbjct: 112 PFDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFG 171

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRRP F  P+FTWS+E+ TFGDGFHYFFYILRKGKRS+ + E  +  D    P+IS+
Sbjct: 172 QPHFRRPLFKDPKFTWSMEYNTFGDGFHYFFYILRKGKRSNEENEDEKCSD----PSISL 227

Query: 182 FHEELEGEDYIFRTNIDE 199
           + +ELEGEDY+FRT ID+
Sbjct: 228 YQDELEGEDYLFRTRIDD 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567385|ref|NP_195162.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|48310184|gb|AAT41770.1| At4g34360 [Arabidopsis thaliana] gi|50198934|gb|AAT70470.1| At4g34360 [Arabidopsis thaliana] gi|332660963|gb|AEE86363.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/198 (71%), Positives = 172/198 (86%), Gaps = 4/198 (2%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +SVLELGCGNS+L E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++ADMLDL
Sbjct: 52  SSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDL 111

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF ++ FDVVIEK TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FG
Sbjct: 112 PFDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFG 171

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRRP F  P+FTWS+E+ TFGDGFHYFFYILRKGKR + ++E  + +D    P+IS+
Sbjct: 172 QPHFRRPLFKDPKFTWSMEYNTFGDGFHYFFYILRKGKRCNDEKEDEKCND----PSISL 227

Query: 182 FHEELEGEDYIFRTNIDE 199
           + +ELEGEDY+FRT ID+
Sbjct: 228 YQDELEGEDYLFRTRIDD 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4455181|emb|CAB36713.1| putative protein [Arabidopsis thaliana] gi|7270386|emb|CAB80153.1| putative protein [Arabidopsis thaliana]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 170/197 (86%), Gaps = 4/197 (2%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VLELGCGNS+L E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++ADMLDLP
Sbjct: 2   KVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLP 61

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F ++ FDVVIEK TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FGQ
Sbjct: 62  FDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQ 121

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 182
           PHFRRP F  P+FTWS+E+ TFGDGFHYFFYILRKGKR + ++E  + +D    P+IS++
Sbjct: 122 PHFRRPLFKDPKFTWSMEYNTFGDGFHYFFYILRKGKRCNDEKEDEKCND----PSISLY 177

Query: 183 HEELEGEDYIFRTNIDE 199
            +ELEGEDY+FRT ID+
Sbjct: 178 QDELEGEDYLFRTRIDD 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438466|ref|XP_004137009.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 166/200 (83%), Gaps = 3/200 (1%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +SVLELG GNS+LSE LYNDGIT ITCIDLSAVAVEKMQ RL LKG KE+KVLEADMLD+
Sbjct: 60  SSVLELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQRRLRLKGMKEIKVLEADMLDM 119

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF N+CFDVV+EK TM+VLFV+ GDPWNPQP T  KV A+LEGVHRVLK DG+F+S++FG
Sbjct: 120 PFGNECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVTAVLEGVHRVLKKDGIFVSITFG 179

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRRP FNAP+FTWS E  TFGDGFHYF Y L KG+R  +D+   +  D+   P++ +
Sbjct: 180 QPHFRRPLFNAPEFTWSFECSTFGDGFHYFLYTLCKGRRLPSDKGEGERFDE---PSVCL 236

Query: 182 FHEELEGEDYIFRTNIDEMD 201
             +ELEGEDY+FRT++DE++
Sbjct: 237 LQDELEGEDYMFRTDVDELN 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506419|ref|XP_004162744.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 164/199 (82%), Gaps = 3/199 (1%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VLELG GNS+LSE LYNDGIT ITCIDLSAVAVEKMQ RL LKG KE+KVLEADMLD+P
Sbjct: 29  QVLELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQRRLRLKGMKEIKVLEADMLDMP 88

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F N+CFDVV+EK TM+VLFV+ GDPWNPQP T  KV A+LEGVHRVLK DG+F+S++FGQ
Sbjct: 89  FGNECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVTAVLEGVHRVLKKDGIFVSITFGQ 148

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 182
           PHFRRP FNAP+FTWS E  TFGDGFHYF Y L KG+R  +D+   +  D+   P++ + 
Sbjct: 149 PHFRRPLFNAPEFTWSFECSTFGDGFHYFLYTLCKGRRLPSDKGEGERFDE---PSVCLL 205

Query: 183 HEELEGEDYIFRTNIDEMD 201
            +ELEGEDY+FRT++DE++
Sbjct: 206 QDELEGEDYMFRTDVDELN 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185925|gb|EEC68352.1| hypothetical protein OsI_36482 [Oryza sativa Indica Group]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 163/199 (81%), Gaps = 3/199 (1%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           SVLE+GCGNSRL E L  +G+   ITC+DLS VAV++M++RL  +G + V+V+ ADMLDL
Sbjct: 51  SVLEVGCGNSRLGEELLREGVAGGITCVDLSPVAVQRMRDRLAEQGTEGVEVVVADMLDL 110

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF  + FD+VIEK TM+VLFV+SGDPWNP P TV  VM MLEG+H+VLKP+G+F+S++FG
Sbjct: 111 PFDRESFDLVIEKGTMDVLFVDSGDPWNPNPTTVDNVMKMLEGIHKVLKPEGIFVSITFG 170

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           QPHFRR FF AP FTWSVEW TFGDGFHYFFYIL+KGKR   D  ++Q H +P  P+I+M
Sbjct: 171 QPHFRRRFFEAPGFTWSVEWSTFGDGFHYFFYILKKGKR-LLDSNVNQ-HTQPAAPSINM 228

Query: 182 FHEELEGEDYIFRTNIDEM 200
           FHEELE EDYIFRTN+DE+
Sbjct: 229 FHEELESEDYIFRTNVDEL 247

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538825|ref|XP_003537901.1| PREDICTED: endothelin-converting enzyme 2-like [Glycine max]

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 164/202 (81%), Gaps = 6/202 (2%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           ++VLELGCGNS++ E L+ DG T ITCIDLS VAV+ MQ+RLL +G+K++KVL+ADML+L
Sbjct: 50  SAVLELGCGNSQMCEQLHKDGTTNITCIDLSPVAVQNMQKRLLSRGFKDIKVLQADMLEL 109

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PF ++CFD+VIEK TM+VLFV+SGDPWNP+PET+ KVMA L+GVHRVLK  G FISV+FG
Sbjct: 110 PFEDECFDLVIEKGTMDVLFVDSGDPWNPKPETIFKVMATLKGVHRVLKAGGTFISVTFG 169

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADE--ELSQSHDKPLVPTI 179
           QPHFRRP FNAP F WSVEW TFG+ FHYF Y+L+KG+RSS D+   + +    P    I
Sbjct: 170 QPHFRRPIFNAPDFNWSVEWTTFGETFHYFVYVLKKGQRSSYDDIPPVKRFEASP----I 225

Query: 180 SMFHEELEGEDYIFRTNIDEMD 201
           ++ HEELE ED+ FR N+DE++
Sbjct: 226 NLLHEELESEDFAFRINVDELN 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2116174	248	AT4G34360 "AT4G34360" [Arabido	0.965	0.782	0.712	3.9e-76
ZFIN|ZDB-GENE-070912-214	260	si:ch211-224b1.4 "si:ch211-224	0.935	0.723	0.369	1.4e-30
UNIPROTKB|G3N1Q4	255	ECE2 "Endothelin-converting en	0.915	0.721	0.365	2.8e-27
UNIPROTKB|D4ADU7	255	LOC100363561 "Protein LOC10036	0.915	0.721	0.365	3.5e-27
UNIPROTKB|F1PUB6	255	ECE2 "Uncharacterized protein"	0.915	0.721	0.371	1.2e-26
WB|WBGene00044236	217	C17E4.11 [Caenorhabditis elega	0.796	0.737	0.390	1.2e-24
TAIR|locus:2101861	252	AT3G60910 "AT3G60910" [Arabido	0.671	0.535	0.312	4.7e-16
DICTYBASE|DDB_G0282393	232	DDB_G0282393 "Methyltransferas	0.860	0.745	0.328	5.4e-15
FB|FBgn0032873	673	CG2614 [Drosophila melanogaste	0.567	0.169	0.355	3e-13
UNIPROTKB|F1NNM3	700	F1NNM3 "Uncharacterized protei	0.820	0.235	0.322	3.2e-13

TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 141/198 (71%), Positives = 172/198 (86%)

Query:     2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
             +SVLELGCGNS+L E LY DGI  ITCIDLS+VAVEKMQ RLL KGYKE+KV++ADMLDL
Sbjct:    52 SSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDL 111

Query:    62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
             PF ++ FDVVIEK TM+VLFV++GDPWNP+PETV+KVMA L+GVHRVLKPDG+FIS++FG
Sbjct:   112 PFDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFG 171

Query:   122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
             QPHFRRP F  P+FTWS+E+ TFGDGFHYFFYILRKGKR + ++E  + +D    P+IS+
Sbjct:   172 QPHFRRPLFKDPKFTWSMEYNTFGDGFHYFFYILRKGKRCNDEKEDEKCND----PSISL 227

Query:   182 FHEELEGEDYIFRTNIDE 199
             + +ELEGEDY+FRT ID+
Sbjct:   228 YQDELEGEDYLFRTRIDD 245

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 71/192 (36%), Positives = 108/192 (56%)

Query:     3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
             ++L LGCGNS LS  +   G ++IT +D S+V VE M ER   K   ++  L  D   L 
Sbjct:    66 NILMLGCGNSALSYDMCQAGYSSITNVDYSSVCVESMAERH--KDCAQLNWLCMDARRLA 123

Query:    63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             F +  FDVV+EK T++ + V   DPW         +  +L  V RVLKP G FISV+F Q
Sbjct:   124 FPDGVFDVVLEKGTLDAMLVEETDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQ 183

Query:   123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSH--DKPLVPTIS 180
             PHFR+  +   ++ WS++   +G  FHYF Y+L KG++ S ++   +    ++   P I 
Sbjct:   184 PHFRKRLYAQAEYDWSIKHYHYGSNFHYFLYVLTKGEKLSTEDAALERRLVEEAEAPPIY 243

Query:   181 MFHEELEGEDYI 192
             +  +E + ED++
Sbjct:   244 VRFQEADSEDFL 255

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/194 (36%), Positives = 103/194 (53%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
             +L LGCGNS LS  ++  G   +T +D S+V V  M+ R     Y  V  L  + +D   
Sbjct:    62 ILVLGCGNSALSYEIFLGGFPDVTSVDYSSVVVAAMRAR-----YAHVPTLRWETMDVRA 116

Query:    61 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
             L F +  FDVV+EK T++ L     DPW    E V  V  +L  V RVL P G FIS++ 
Sbjct:   117 LGFPSGSFDVVLEKGTLDALLTGEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTS 176

Query:   121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL--SQSHDKPLVPT 178
               PHFR   +    + WS+   T+G+GF + FY+++KGK  S  +    +Q    P  PT
Sbjct:   177 AAPHFRTRHYAQAHYGWSLRHATYGNGFQFHFYLMQKGKELSVAQLAVGAQILSPPRPPT 236

Query:   179 ISMFHEELEGEDYI 192
              S F ++ + ED++
Sbjct:   237 PSCFLQDSDHEDFL 250

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 71/194 (36%), Positives = 100/194 (51%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
             +L LGCGNS LS  L+  G   +T +D S V V  MQ R     Y  V  L  + +D   
Sbjct:    62 ILVLGCGNSALSYELFLGGFPNVTSVDYSPVVVAAMQVR-----YAHVPSLRWETMDIRA 116

Query:    61 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
             L F +  FDVV+EK T++ L     DPWN   E V  V  +L  V RVL P G FIS++ 
Sbjct:   117 LDFPSGSFDVVLEKGTLDALLAGEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTP 176

Query:   121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL--SQSHDKPLVPT 178
               PHFR   +  P + WS+   T+  GFH+ FY++ KG+  +  +    +Q    P  P 
Sbjct:   177 AGPHFRIRHYAQPCYDWSLRHTTYSSGFHFHFYVMHKGRELTVSQLALGAQILSPPSPPA 236

Query:   179 ISMFHEELEGEDYI 192
                F ++ + ED++
Sbjct:   237 PPCFLQDSDNEDFL 250

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 72/194 (37%), Positives = 103/194 (53%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
             +L LGCGNS LS  L+  G   +T +D S+V V  MQ R     Y  V  L  + +D   
Sbjct:    62 ILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMQAR-----YAHVPTLRWETMDVRA 116

Query:    61 LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
             L F +  FDVV+EK T++ L     DPWN   E V  +  +L  V RVL   G FIS++ 
Sbjct:   117 LDFPSGSFDVVLEKGTLDALLAGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTS 176

Query:   121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSS-ADEEL-SQSHDKPLVPT 178
               PHFR   +   ++ WS+   T+G GFH+  YI++KGK  + A   L ++    P  PT
Sbjct:   177 AAPHFRIRHYAQARYGWSLRHATYGSGFHFHLYIMQKGKELTVAQLALGTKILSPPRPPT 236

Query:   179 ISMFHEELEGEDYI 192
                F ++ + ED++
Sbjct:   237 SPCFLQDSDHEDFL 250

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00044236 C17E4.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 66/169 (39%), Positives = 94/169 (55%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P 62
             +  +GCG+S++S  L+  G   IT ID S V +E    RL    Y  ++ +  D+  L  
Sbjct:    46 IAHIGCGSSQVSMQLWELGYRNITNIDYSQVLIEN--GRL---EYPNMEWISDDITTLIN 100

Query:    63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
               +  FDVV EKAT+E + V     W P    +  +  +   + RVLKP+G+FISVSF Q
Sbjct:   101 CESSSFDVVFEKATIEAILVTEKSAWEPSDSALHNLENIFSSICRVLKPNGIFISVSFTQ 160

Query:   123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSH 171
             PHFR P     +  WSVE   FGD FHY+ Y+ RKG  +S ++EL+  +
Sbjct:   161 PHFRIPALLREK-NWSVEMFEFGDTFHYYVYVCRKG--NSLNKELADRY 206

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 46/147 (31%), Positives = 76/147 (51%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP- 62
             VL +GCGNS +SE +  DG   I  +D+S+VA+E MQ +       ++K ++ D+ D+  
Sbjct:    53 VLMVGCGNSLMSEDMVKDGYEDIMNVDISSVAIEMMQTKYA--SVPQLKYMQMDVRDMSY 110

Query:    63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             F +D FD +I+K T++ L   S        + +     ML  V R++KP G +  +++G 
Sbjct:   111 FEDDSFDTIIDKGTLDSLMCGS--------DALLSASRMLGEVSRLIKPGGTYFLITYGD 162

Query:   123 PHFRRPFFNAPQFTWSVE-WITFGDGF 148
             P  R P      + W +  +I    GF
Sbjct:   163 PKVRMPHLTRSAYNWKISLYIIPRPGF 189

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0282393 DDB_G0282393 "Methyltransferase-like protein 12, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 63/192 (32%), Positives = 88/192 (45%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P 62
             +L +GCGNS+L E + +D    I  +D S   +E M+ER   KG   ++ L  D  D+ P
Sbjct:    46 ILMIGCGNSKLGEDMNDDEFVDIINMDYSEPLIEYMKERT--KGRIGLEYLTMDGRDMKP 103

Query:    63 FSNDC-FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
             F  D  FD V +K T++ +  +  D  N +         +LE V RVLKP G FI +++G
Sbjct:   104 FFKDNHFDHVFDKGTLDAVMCSDDDNENAK-------QILLE-VSRVLKPGGFFIVMTYG 155

Query:   122 QPHFRRPFFNAPQFTWSVEWITFGDG----FHYFFYILRKGKRSSADEELSQSHDKPLVP 177
              P  R P  N P   W+ E    G       +   Y+    K S   E  S  H  P + 
Sbjct:   156 SPESRLPLLNNPIHNWTTELRMAGSNENSQMNQCHYVYICNKNSENGE--SMKHTFP-IE 212

Query:   178 TISMFHEELEGE 189
             T S F     GE
Sbjct:   213 THSHFLNSSIGE 224

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

FB|FBgn0032873 CG2614 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 43/121 (35%), Positives = 68/121 (56%)

Query:     4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
             +L LGCGNS+LS  +Y+ G   IT ID+S +AV+KM E L  K   E+K L+ D   + F
Sbjct:    52 ILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLE-LNAKSRPEMKFLQMDATAMTF 110

Query:    64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
              ++ F V ++K T++ LF +       +PET   V    + + R ++  G ++ +S  Q 
Sbjct:   111 PDESFSVSLDKGTLDALFADD------EPETRAVVENYFKEILRTMRNGGRYVGISLLQE 164

Query:   124 H 124
             H
Sbjct:   165 H 165

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1NNM3 F1NNM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 60/186 (32%), Positives = 93/186 (50%)

Query:     4 VLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
             VL +GCGNS LSE +Y+ G+   I  ID+S   + +MQER   K  K +  L+ DML + 
Sbjct:    67 VLVVGCGNSELSEQMYDTGMCEDIVNIDISDAVIRQMQERSASKRPK-MSYLQMDMLHMD 125

Query:    63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             F +  F V ++K T++ +  +       +  T++KV  M   + RVL+  G ++ VS  Q
Sbjct:   126 FPDAHFQVALDKGTLDAILTDD------EEVTLSKVDRMFAEISRVLQVGGRYLCVSLAQ 179

Query:   123 PH-FRRPFFNAPQFTWSV---EWITFGDGFHY----FFYILRKGKR--SSADEELS---Q 169
              H  ++      Q  W V   E  T GD   +    F Y++ K ++   SA + L    +
Sbjct:   180 AHVLKKAVEYFSQEGWVVRVHEVATSGDKQQFVLPVFVYVMTKFRKIPGSALQILEMCPE 239

Query:   170 SHDKPL 175
               DKPL
Sbjct:   240 EQDKPL 245

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	9e-16
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	6e-15
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	5e-14
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	9e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	9e-11
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	1e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-08
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	6e-06
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	6e-05
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	1e-04
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-04
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	1e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	3e-04
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	3e-04
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	4e-04
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	5e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	7e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	0.001
TIGR04074	462	TIGR04074, bacter_Hen1, 3' terminal RNA ribose 2'-	0.001
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	0.003

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 2   TSVLELGCGNSRLSEGLYN-DGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML 59
             VL+LGCG   L+  L    G  A +  ID+S  A+EK +E     GY+ V+ ++ D+ 
Sbjct: 5   IKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIE 64

Query: 60  DLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           +LP     ++ FDVVI    +     +  DP             +LE + RVLKP G+ I
Sbjct: 65  ELPQLQLEDNSFDVVISNEVLN----HLPDP-----------DKVLEEIIRVLKPGGVLI 109

Query: 117 SVSF 120
               
Sbjct: 110 VSDP 113

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 66.9 bits (164), Expect = 6e-15
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 21/112 (18%)

Query: 5   LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS 64
           L++GCG   L+E L   G   +T +DLS   +   ++R         K +  D  DLPF 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR------APRKFVVGDAEDLPFP 54

Query: 65  NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           ++ FDVV+   +  VL              +      L  + RVLKP G  +
Sbjct: 55  DESFDVVV---SSLVL------------HHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL+LGCG   L+  L +     +T +D+S VA+E  ++         V+VL+ D  +LP 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 64  SND-CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
             D  FDV+I           S  P +   E    +   LE   R+LKP G+ +
Sbjct: 62  EADESFDVII-----------SDPPLHHLVED---LARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 58.5 bits (142), Expect = 9e-12
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 13/110 (11%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L+LGCG  R+   L   G +++T +D+S  A+E  +ERL  KG K V+ + AD  DLPF
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK-VRFVVADARDLPF 59

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
               FD+VI           S D  +P+     ++ A+L    R+L+P G
Sbjct: 60  EEGSFDLVI-------CAGLSLDYLSPK-----QLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
            VL++GCG   L+  L      A +T +DLS   +E  +E   L     +  ++ D  D 
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
               + FD V        L                    +L+ +  +LKP G  +
Sbjct: 64  LDLLEGFDAVFIGGGGGDLL------------------ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 3   SVLELGCGNSRLSEGLYN-DGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEAD 57
            VL++ CG   ++  L    G   +  +D+S     VA EK+++    KG + V+ +  D
Sbjct: 54  KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK----KGVQNVEFVVGD 109

Query: 58  MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
             +LPF ++ FD V    T+     N           VT +   L+ ++RVLKP G  + 
Sbjct: 110 AENLPFPDNSFDAV----TISFGLRN-----------VTDIDKALKEMYRVLKPGGRLLV 154

Query: 118 VSFGQPH-------FRRPFFNA--PQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELS 168
           + F +P        +   +F    P      + +   D   Y  Y+    +R    EEL 
Sbjct: 155 LEFSKPDNPVLRKAYILYYFKYVLPLI---GKLVA-KDAEAY-EYLAESIRRFPDQEELK 209

Query: 169 Q 169
           Q
Sbjct: 210 Q 210

Length = 238

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 5   LELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           L++GCG   L   L     G+   T +D+S  A+E   ERL   G  +   +  D+LD  
Sbjct: 1   LDIGCGTGTLLRALLEALPGLE-YTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59

Query: 63  FSNDC-FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
             +   FDVV+    +  L     DP            A+L  + R+LKP G+ 
Sbjct: 60  DLDPGSFDVVVASNVLHHLA----DPR-----------AVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
            SVL++GCG   L+  L      A     D+SA     M  +   K  + V+ +  D   
Sbjct: 36  ASVLDIGCGTGYLTRALLKRFPQAEFIANDISAG----MLAQAKTKLSENVQFICGDAEK 91

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
           LP  +  FD+++    ++         W             L  + RVLKP GL    +F
Sbjct: 92  LPLEDSSFDLIVSNLALQ---------WCDDLSQA------LSELARVLKPGGLLAFSTF 136

Query: 121 GQPHFR 126
           G     
Sbjct: 137 GPGTLH 142

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 23/140 (16%)

Query: 3   SVLELGCGNS----RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 58
             L++  G       LS+   + G   +  +D++   +++ +++   +G   ++ L+ + 
Sbjct: 50  KFLDVAGGTGDWTFGLSDSAGSSG--KVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNA 107

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118
            +LPF +D FD+V    T+     N               + +L+   RVLKP G  + +
Sbjct: 108 EELPFEDDSFDIV----TISFGLRN-----------FPDYLKVLKEAFRVLKPGGRVVCL 152

Query: 119 SFGQPHFRRPFFNAPQFTWS 138
            F +P    P  +     + 
Sbjct: 153 EFSKPEN--PLLSQAYELYF 170

Length = 233

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 32/152 (21%)

Query: 3   SVLELGCG---NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM 58
           ++L++GCG    +  +   Y   +  +T   LS   +   ++R+  +G ++ V+V   D 
Sbjct: 75  TLLDIGCGWGGLAIYAAEEYGVTVVGVT---LSEEQLAYAEKRIAARGLEDNVEVRLQDY 131

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFI 116
            D     + FD ++   ++ +             E V K       + V+ +LKP G  +
Sbjct: 132 RDF---EEPFDRIV---SVGMF------------EHVGKENYDDFFKKVYALLKPGGRML 173

Query: 117 SVSFGQPHFRRPFFNAPQFTWSVEWITFGDGF 148
             S   P      F      +  ++I F  G 
Sbjct: 174 LHSITGPDQEFRRFPD----FIDKYI-FPGGE 200

Length = 283

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.4 bits (94), Expect = 1e-04
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 20/133 (15%)

Query: 4   VLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           VL++GCG  RL+      G  A +  +DLS   +   + R    G   V  + AD L   
Sbjct: 52  VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV 111

Query: 63  F---SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119
                +  FD+VI    + +L                     L  + RVLKP G  +   
Sbjct: 112 LPFEDSASFDLVISLLVLHLL----------------PPAKALRELLRVLKPGGRLVLSD 155

Query: 120 FGQPHFRRPFFNA 132
             +         A
Sbjct: 156 LLRDGLLEGRLAA 168

Length = 257

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 3   SVLELGCGNSRLSE--GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
            VL+LGCG   L       +  +  +T +D++A A+E  +  L   G +  +V  +D+  
Sbjct: 34  KVLDLGCGYGVLGAALAKRSPDLE-VTMVDINARALESARANLAANGLENGEVFWSDLYS 92

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNP-----QPETVTKVMAMLEGVHRVLKPDG-L 114
                  FD++I                NP     +          + G  R LKP G L
Sbjct: 93  -AVEPGKFDLII---------------SNPPFHAGKATDYDVAQRFIAGAARHLKPGGEL 136

Query: 115 FI 116
           +I
Sbjct: 137 WI 138

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 3  SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLD 60
           VLE+G G+  ++     +G   +  +D++  AVE  +    L   +   V+V+ +D+ +
Sbjct: 26 RVLEVGTGSGIVAIVAAKNGKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84

Query: 61 LPFSNDCFDVVI 72
           PF  D FDV++
Sbjct: 85 -PFRGDKFDVIL 95

Length = 188

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL++GCG   LSE L   G + +T ID S   +E  +   L  G   +   +A + DL 
Sbjct: 62  RVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLA 119

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFIS 117
            +   FDVV     MEVL            E V    + L    +++KP G LF+S
Sbjct: 120 SAGGQFDVVT---CMEVL------------EHVPDPESFLRACAKLVKPGGILFLS 160

Length = 243

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 25/102 (24%)

Query: 26  ITCIDLS----AVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81
           +T +D S     VA +K       +    ++ ++AD   LPF ++ FD V    T+    
Sbjct: 67  VTGVDFSSEMLEVAKKK------SELPLNIEFIQADAEALPFEDNSFDAV----TIAFGL 116

Query: 82  VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            N  D          K    L  ++RVLKP G  + + F +P
Sbjct: 117 RNVTDI--------QKA---LREMYRVLKPGGRLVILEFSKP 147

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 41/132 (31%)

Query: 2   TSVLELGCG----NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD 57
           T++L++GCG       L++ L       +  +D+S VA+     +   K Y +V    A 
Sbjct: 87  TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-----KYAAKRYPQVTFCVAS 141

Query: 58  MLDLPFSNDCFDVVIE-----KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD 112
              LPF++   D +I      KA                           E + RV+KP 
Sbjct: 142 SHRLPFADQSLDAIIRIYAPCKA---------------------------EELARVVKPG 174

Query: 113 GLFISVSFGQPH 124
           G+ I+V+ G  H
Sbjct: 175 GIVITVTPGPRH 186

Length = 272

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 26/116 (22%)

Query: 4   VLELGCGNSRL----SEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLE 55
           VL+L CG+  L    SE + +DG   +  +D S    AVA  + QE      YK ++ +E
Sbjct: 77  VLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASR-QELKAKSCYKNIEWIE 133

Query: 56  ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 111
            D  DLPF +  FD +    TM     N           V ++ AM E ++RVLKP
Sbjct: 134 GDATDLPFDDCYFDAI----TMGYGLRN----------VVDRLKAMQE-MYRVLKP 174

Length = 261

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 24/126 (19%)

Query: 4   VLELGCGNSRLSEGLYNDG--ITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEAD 57
           VL+L CG   L+  L         +  +D S    AV  EK+++  L      V+ ++ D
Sbjct: 55  VLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL---SGNVEFVQGD 111

Query: 58  MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
              LPF ++ FD V    T+     N           V  +   L  ++RVLKP G  + 
Sbjct: 112 AEALPFPDNSFDAV----TIAFGLRN-----------VPDIDKALREMYRVLKPGGRLVI 156

Query: 118 VSFGQP 123
           + F +P
Sbjct: 157 LEFSKP 162

Length = 239

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE---KMQERLLLKGYKEVKVLEADML 59
           +VL+LG G   L+ G    G + +  +D+   A+E      E LL     +V+ + AD+ 
Sbjct: 48  TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG----DVEFVVADVS 103

Query: 60  DLPFSNDCFDVVI 72
           D       FD VI
Sbjct: 104 DF---RGKFDTVI 113

Length = 198

>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose 2'-O-methyltransferase Hen1

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 3   SVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLL 45
           SVL+LGCG  +L   L  +     I  +D+SA  +E    RL L
Sbjct: 285 SVLDLGCGEGKLLRLLLAEKQFERIAGVDVSARELEIAARRLKL 328

Members of this protein family are bacterial Hen1, a 3' terminal RNA ribose 2'-O-methyltransferase that acts in bacterial RNA repair. All members of the seed alignment belong to a cassette with the RNA repair enzyme polynucleotide kinase-phosphatase (Pnkp). Chemically similar Hen1 in eukaryotes acts instead on small regulatory RNAs [Transcription, RNA processing, Protein synthesis, tRNA and rRNA base modification]. Length = 462

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 32/140 (22%)

Query: 2   TSVLELGCGNS----RLSEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKEVKV 53
           TS L++ CG +     L+E +  +G   +  +D S    +V  +K+++     G   V++
Sbjct: 47  TSALDVCCGTADWSIALAEAVGPEG--HVIGLDFSENMLSVGRQKVKDA----GLHNVEL 100

Query: 54  LEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
           +  + ++LPF ++ FD V    T+     N           V   M +L  ++RV+KP G
Sbjct: 101 VHGNAMELPFDDNSFDYV----TIGFGLRN-----------VPDYMQVLREMYRVVKPGG 145

Query: 114 LFISVSFGQPH---FRRPFF 130
             + +   QP    F++ +F
Sbjct: 146 KVVCLETSQPTIPGFKQLYF 165

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.93
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.87
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.77
PRK11207	197	tellurite resistance protein TehB; Provisional	99.77
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.74
PLN02244	340	tocopherol O-methyltransferase	99.74
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.74
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.73
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.72
PRK05785	226	hypothetical protein; Provisional	99.71
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.71
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.7
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.7
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.7
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.69
PRK12335	287	tellurite resistance protein TehB; Provisional	99.69
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.69
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.69
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.69
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.69
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.68
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.67
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.67
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.67
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.66
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.65
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.65
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.64
PLN02336	475	phosphoethanolamine N-methyltransferase	99.64
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.63
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.63
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.63
PRK06922	677	hypothetical protein; Provisional	99.63
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.62
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.62
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.62
PLN02490	340	MPBQ/MSBQ methyltransferase	99.62
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.61
KOG4300	252	consensus Predicted methyltransferase [General fun	99.61
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.6
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.6
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.6
PRK08317	241	hypothetical protein; Provisional	99.6
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.6
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.58
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.58
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.57
KOG1271	227	consensus Methyltransferases [General function pre	99.57
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.56
PRK06202	232	hypothetical protein; Provisional	99.55
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.55
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.55
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.55
PLN02336	475	phosphoethanolamine N-methyltransferase	99.55
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.55
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.55
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.53
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.53
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.52
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.52
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.52
PLN03075	296	nicotianamine synthase; Provisional	99.52
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.52
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.52
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.52
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.51
KOG2361	264	consensus Predicted methyltransferase [General fun	99.51
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.51
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.51
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.51
PRK14967	223	putative methyltransferase; Provisional	99.5
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.5
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.5
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.49
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.49
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.49
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.48
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.48
PRK07402	196	precorrin-6B methylase; Provisional	99.48
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.47
COG4123	248	Predicted O-methyltransferase [General function pr	99.47
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.46
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.46
PRK14968	188	putative methyltransferase; Provisional	99.45
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.45
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.45
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.44
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.44
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.44
TIGR03438	301	probable methyltransferase. This model represents	99.42
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.42
PRK04266	226	fibrillarin; Provisional	99.42
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.41
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.41
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.4
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.4
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.39
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.39
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.39
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.38
TIGR00438	188	rrmJ cell division protein FtsJ.	99.37
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.37
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.37
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.36
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.36
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.35
PRK00811	283	spermidine synthase; Provisional	99.35
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.34
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.34
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.33
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.32
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.32
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.31
PRK04457	262	spermidine synthase; Provisional	99.29
PTZ00146	293	fibrillarin; Provisional	99.28
KOG3010	261	consensus Methyltransferase [General function pred	99.28
PHA03411	279	putative methyltransferase; Provisional	99.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.26
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.25
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.25
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.24
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.23
KOG2899	288	consensus Predicted methyltransferase [General fun	99.23
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.22
PLN02672	1082	methionine S-methyltransferase	99.21
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.21
PLN02366	308	spermidine synthase	99.2
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.19
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.19
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.19
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.16
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.16
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.16
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.16
PHA03412	241	putative methyltransferase; Provisional	99.16
PRK01581	374	speE spermidine synthase; Validated	99.15
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.13
PLN02476	278	O-methyltransferase	99.13
PRK03612	521	spermidine synthase; Provisional	99.12
COG4122	219	Predicted O-methyltransferase [General function pr	99.12
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.11
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.11
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.1
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.09
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.08
PLN02823	336	spermine synthase	99.02
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.02
KOG2904	328	consensus Predicted methyltransferase [General fun	99.01
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.01
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.01
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.0
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.96
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.95
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.94
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.94
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.94
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.93
KOG2940	325	consensus Predicted methyltransferase [General fun	98.93
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.93
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.93
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.91
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.91
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.9
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.9
COG2520	341	Predicted methyltransferase [General function pred	98.89
COG2521	287	Predicted archaeal methyltransferase [General func	98.86
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.86
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.86
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.84
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.83
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.81
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.78
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.77
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.76
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.75
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.74
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.74
PRK04148	134	hypothetical protein; Provisional	98.74
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.73
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.68
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.67
PRK00536	262	speE spermidine synthase; Provisional	98.67
COG4076	252	Predicted RNA methylase [General function predicti	98.67
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.63
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.62
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.6
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.6
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.58
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.55
COG3897	218	Predicted methyltransferase [General function pred	98.54
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.54
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.54
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.54
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.52
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.46
KOG1331	293	consensus Predicted methyltransferase [General fun	98.46
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.45
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.38
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.38
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.36
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.33
KOG3115	249	consensus Methyltransferase-like protein [General	98.31
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.3
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.24
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.24
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.23
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.23
KOG2730	263	consensus Methylase [General function prediction o	98.2
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.15
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.15
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.12
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.1
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.09
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.08
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.08
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.05
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.05
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.04
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.03
PF13679	141	Methyltransf_32: Methyltransferase domain	98.0
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.96
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.89
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.89
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.88
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.86
PRK10742	250	putative methyltransferase; Provisional	97.82
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.79
COG4798	238	Predicted methyltransferase [General function pred	97.7
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.7
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.69
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.68
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.49
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.33
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.33
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.3
PHA01634	156	hypothetical protein	97.25
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.24
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.22
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.21
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.17
COG1568	354	Predicted methyltransferases [General function pre	97.15
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.11
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.09
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.08
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.04
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.98
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.9
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.9
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.89
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.86
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.85
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.7
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.64
PRK11524	284	putative methyltransferase; Provisional	96.62
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.58
COG0286	489	HsdM Type I restriction-modification system methyl	96.55
KOG1227	351	consensus Putative methyltransferase [General func	96.48
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.32
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.31
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.27
PRK13699	227	putative methylase; Provisional	96.19
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.16
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.11
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.09
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.04
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.99
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.95
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.91
COG4301	321	Uncharacterized conserved protein [Function unknow	95.9
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.33
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	95.24
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.1
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.04
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.99
COG1565	370	Uncharacterized conserved protein [Function unknow	94.89
PRK13699	227	putative methylase; Provisional	94.87
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.84
PRK11524	284	putative methyltransferase; Provisional	94.78
KOG2920	282	consensus Predicted methyltransferase [General fun	94.71
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.68
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.63
PTZ00357	1072	methyltransferase; Provisional	94.44
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.24
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	94.14
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.07
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.98
PRK10458	467	DNA cytosine methylase; Provisional	93.98
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.95
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.94
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.77
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.68
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.59
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.38
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.31
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.23
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.92
KOG2078	495	consensus tRNA modification enzyme [RNA processing	92.89
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.85
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.72
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.59
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.58
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.55
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.55
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.5
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.4
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.39
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.29
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.17
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.39
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	91.38
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	90.8
PLN02740	381	Alcohol dehydrogenase-like	90.7
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	90.14
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.11
PLN02586	360	probable cinnamyl alcohol dehydrogenase	89.99
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	89.89
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	89.86
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	89.66
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	89.57
PLN02827	378	Alcohol dehydrogenase-like	89.54
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.32
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.17
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.02
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	88.97
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	88.77
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	88.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.29
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.11
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	87.6
COG0863	302	DNA modification methylase [DNA replication, recom	87.51
COG2933	358	Predicted SAM-dependent methyltransferase [General	87.41
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.23
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.22
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.81
PRK08265	261	short chain dehydrogenase; Provisional	86.76
PLN02514	357	cinnamyl-alcohol dehydrogenase	86.74
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	86.54
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.43
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	86.4
PRK08324	681	short chain dehydrogenase; Validated	86.31
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	86.28
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	86.25
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.23
PRK10669	558	putative cation:proton antiport protein; Provision	86.1
COG1255	129	Uncharacterized protein conserved in archaea [Func	85.85
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	85.83
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	85.78
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	85.71
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	85.53
PRK08339	263	short chain dehydrogenase; Provisional	85.43
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	85.4
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	85.36
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	85.21
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	85.16
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	84.98
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.83
PRK06701	290	short chain dehydrogenase; Provisional	84.74
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.6
PRK07102	243	short chain dehydrogenase; Provisional	84.32
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	84.3
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	84.27
COG0569	225	TrkA K+ transport systems, NAD-binding component [	84.23
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	84.02
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	83.77
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	83.59
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	83.59
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	83.49
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.48
PLN02178	375	cinnamyl-alcohol dehydrogenase	83.39
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.32
PRK05854	313	short chain dehydrogenase; Provisional	83.11
PRK07417	279	arogenate dehydrogenase; Reviewed	83.01
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	82.85
PRK05867	253	short chain dehydrogenase; Provisional	82.6
KOG3924	419	consensus Putative protein methyltransferase invol	82.54
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	82.28
PRK07904	253	short chain dehydrogenase; Provisional	82.26
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	82.15
PRK07677	252	short chain dehydrogenase; Provisional	82.05
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	81.88
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.8
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	81.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	81.78
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	81.75
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	81.71
PLN02494	477	adenosylhomocysteinase	81.69
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.45
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	81.26
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.22
PRK06172	253	short chain dehydrogenase; Provisional	81.08
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	80.91
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	80.85
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	80.75
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	80.67
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	80.66
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	80.6
PRK07890	258	short chain dehydrogenase; Provisional	80.57
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.55
PRK06125	259	short chain dehydrogenase; Provisional	80.49
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	80.46
PRK07806	248	short chain dehydrogenase; Provisional	80.36

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.93  E-value=1.7e-26  Score=179.92  Aligned_cols=166  Identities=25%  Similarity=0.433  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||||.++..+++. ++. +|+++|+|++|++.++++....+..+++++++|+.++++++++||+|++.+.++
T Consensus        48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr  127 (233)
T PF01209_consen   48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR  127 (233)
T ss_dssp             --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred             CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence            568999999999999999876 443 999999999999999999988776799999999999999999999999999887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEe-
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK-  157 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (201)
                      .+               .+..+++++++|+|||||++++.+++.|...  ++.. .+.            .|+..++|. 
T Consensus       128 n~---------------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~--~~~~-~~~------------~y~~~ilP~~  177 (233)
T PF01209_consen  128 NF---------------PDRERALREMYRVLKPGGRLVILEFSKPRNP--LLRA-LYK------------FYFKYILPLI  177 (233)
T ss_dssp             G----------------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSH--HHHH-HHH------------H---------
T ss_pred             hh---------------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCc--hhhc-eee------------eeeccccccc
Confidence            65               5678999999999999999999998876532  1111 111            355667777 


Q ss_pred             CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957          158 GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  200 (201)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  200 (201)
                      |+.+..+. ..|+|   |.++|++|++.-+..+.+.+.||+..
T Consensus       178 g~l~~~~~-~~Y~y---L~~Si~~f~~~~~~~~~l~~~Gf~~v  216 (233)
T PF01209_consen  178 GRLLSGDR-EAYRY---LPESIRRFPSPEELKELLEEAGFKNV  216 (233)
T ss_dssp             -------------------------------------------
T ss_pred             cccccccc-ccccc---cccccccccccccccccccccccccc
Confidence            77777665 68999   99999999999999999999999854

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.93  E-value=8.9e-27  Score=180.18  Aligned_cols=166  Identities=26%  Similarity=0.428  Sum_probs=138.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|||+|||||.++..+++.... +|+++|+|+.|++.++++....+..+++++++|+..+|+++++||+|.++..++.
T Consensus        52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn  131 (238)
T COG2226          52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN  131 (238)
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence            579999999999999999988434 9999999999999999999887765699999999999999999999999999876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEE-EEEe-
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY-ILRK-  157 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  157 (201)
                      +               .++.++|++++|+|||||++++.+++.|...  .+.. .+.            .|++. ++|. 
T Consensus       132 v---------------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~--~~~~-~~~------------~~~~~~v~P~~  181 (238)
T COG2226         132 V---------------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNP--VLRK-AYI------------LYYFKYVLPLI  181 (238)
T ss_pred             C---------------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCch--hhHH-HHH------------HHHHHhHhhhh
Confidence            5               7889999999999999999999999876432  1110 011            12233 7777 


Q ss_pred             CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957          158 GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  200 (201)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  200 (201)
                      |....++. .+|+|   ++++++.|++.-+....+...||+++
T Consensus       182 g~~~~~~~-~~y~y---L~eSi~~~p~~~~l~~~~~~~gf~~i  220 (238)
T COG2226         182 GKLVAKDA-EAYEY---LAESIRRFPDQEELKQMIEKAGFEEV  220 (238)
T ss_pred             ceeeecCh-HHHHH---HHHHHHhCCCHHHHHHHHHhcCceEE
Confidence            77777666 69999   99999999999988888888888764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.87  E-value=1.8e-22  Score=154.42  Aligned_cols=164  Identities=24%  Similarity=0.326  Sum_probs=134.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-------CCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCCCCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-------ITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-------~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~D~   70 (201)
                      ++++||++||||.++.-+.+..       ..+|+.+|++++|+..++++....+   .+++.++++|++++|+++++||.
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~  180 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA  180 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence            4789999999999999888762       1389999999999999999985544   23489999999999999999999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc-ccccccCCCCceEEEEEEeCCeee
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF-RRPFFNAPQFTWSVEWITFGDGFH  149 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (201)
                      .++.+.+-.               ..++.+.+++.+|+|||||++.+.+++.-.. .-..++.                .
T Consensus       181 yTiafGIRN---------------~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~----------------~  229 (296)
T KOG1540|consen  181 YTIAFGIRN---------------VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD----------------Q  229 (296)
T ss_pred             EEEecceec---------------CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------------h
Confidence            998877744               4788999999999999999999999875431 1111111                3


Q ss_pred             EEEEEEEe-CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCC
Q 028957          150 YFFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDE  199 (201)
Q Consensus       150 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  199 (201)
                      |++.+++. |..+.... .+|+|   ++++|++|+.+-+++..+...||..
T Consensus       230 ysf~VlpvlG~~iagd~-~sYqY---LveSI~rfp~qe~f~~miedaGF~~  276 (296)
T KOG1540|consen  230 YSFDVLPVLGEIIAGDR-KSYQY---LVESIRRFPPQEEFASMIEDAGFSS  276 (296)
T ss_pred             hhhhhhchhhHhhhhhH-hhhhh---HHhhhhcCCCHHHHHHHHHHcCCcc
Confidence            56667787 88888888 89999   9999999999999988888888753

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.82  E-value=5.2e-21  Score=151.89  Aligned_cols=166  Identities=20%  Similarity=0.304  Sum_probs=122.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhh---cCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL---KGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++. ++. +|+|+|+|++|++.++++...   ...++++++++|+.++++++++||+|+++.
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  153 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY  153 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence            468999999999999988876 443 899999999999999877531   224579999999999999889999999998


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL  155 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (201)
                      ++|++               .+..++++++.++|||||++++.++..+...  +.. ....|....           ...
T Consensus       154 ~l~~~---------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~--~~~-~~~~~~~~~-----------~~~  204 (261)
T PLN02233        154 GLRNV---------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQP--FTT-SMQEWMIDN-----------VVV  204 (261)
T ss_pred             ccccC---------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcH--HHH-HHHHHHHhh-----------hhh
Confidence            88766               4678899999999999999999988765421  100 000110000           011


Q ss_pred             EeCCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957          156 RKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM  200 (201)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  200 (201)
                      +.+... ... ..|.|   +..++.+|.+..+-.+.+.+.||+.+
T Consensus       205 ~~~~~~-~~~-~~y~~---l~~s~~~f~s~~el~~ll~~aGF~~~  244 (261)
T PLN02233        205 PVATGY-GLA-KEYEY---LKSSINEYLTGEELEKLALEAGFSSA  244 (261)
T ss_pred             HHHHHh-CCh-HHHHH---HHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence            112211 122 36777   88889999999999999998888753

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.80  E-value=7.3e-19  Score=117.91  Aligned_cols=95  Identities=35%  Similarity=0.598  Sum_probs=82.0

Q ss_pred             EEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeeecC
Q 028957            5 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS   84 (201)
Q Consensus         5 LDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~   84 (201)
                      ||+|||+|..+..+++.+..+|+++|+++++++.++++....   ++.+..+|+.++++++++||+|++..++|++    
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence            899999999999999994449999999999999999987653   5569999999999999999999999999876    


Q ss_pred             CCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           85 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                                 ++..++++++.|+|||||++++
T Consensus        74 -----------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 -----------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------cCHHHHHHHHHHHcCcCeEEeC
Confidence                       6889999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.79  E-value=3.3e-18  Score=118.66  Aligned_cols=105  Identities=31%  Similarity=0.510  Sum_probs=86.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEccc-CCCCCCCCceeEEEecc-
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADM-LDLPFSNDCFDVVIEKA-   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~-~~~~~~~~~~D~v~~~~-   75 (201)
                      +.+|||+|||+|.++..+++.  +. +|+++|+++++++.++++....+ .++++++++|+ ..... ...||+|++.+ 
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            579999999999999999993  44 99999999999999999984443 47899999999 33332 35699999988 


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .+++++            +.++..++++++.+.|+|||++++.+
T Consensus        80 ~~~~~~------------~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLL------------PLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCC------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            555442            33678899999999999999999865

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.78  E-value=3e-18  Score=125.45  Aligned_cols=105  Identities=27%  Similarity=0.484  Sum_probs=91.4

Q ss_pred             CCcEEEecCCCChhhHHHHh-cCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYN-DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~-~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++ .++. +++|+|+++++++.++++++..+.++++++++|+.+++  ++ ++||+|++..+
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~   82 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV   82 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence            46899999999999999994 4433 99999999999999999998888889999999999966  44 78999999988


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++++               .+...+++++.+.|+++|.+++..+.
T Consensus        83 l~~~---------------~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   83 LHHF---------------PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             GGGT---------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhc---------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            8655               56789999999999999999987765

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.77  E-value=8.9e-19  Score=133.94  Aligned_cols=105  Identities=28%  Similarity=0.408  Sum_probs=92.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |.+|||+|||.|.++..+|+.|. .|+|+|+++.+++.|+.+....++ ++.+.+..++++....++||+|+|..+++|+
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv  137 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEHV  137 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence            57999999999999999999997 999999999999999998887765 4678888777766555899999998888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     ++...+++.+.+++||||.+++.+.+.
T Consensus       138 ---------------~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         138 ---------------PDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             ---------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence                           777889999999999999999988764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.77  E-value=1e-17  Score=127.77  Aligned_cols=104  Identities=21%  Similarity=0.416  Sum_probs=90.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..+++.+. +|+++|+|+.+++.++++....+..++.+.+.|+...+++ ++||+|+++.++|++
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~  108 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL  108 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence            46899999999999999999877 9999999999999999988877776789999998876664 679999999988765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                   +.++...+++++.++|+|||.+++..
T Consensus       109 -------------~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        109 -------------EAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                         34578899999999999999966543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.74  E-value=1.1e-17  Score=135.77  Aligned_cols=106  Identities=18%  Similarity=0.259  Sum_probs=91.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+|+|+++++++.++++....+ ..++.++++|+.++++..++||+|++..++++
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            35899999999999999988776 89999999999999998765443 24789999999888777789999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +               .+...+++++.++|||||.+++.+.+.
T Consensus       211 v---------------~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        211 V---------------ANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             c---------------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            7               566899999999999999999887654

>PLN02244 tocopherol O-methyltransferase

Probab=99.74  E-value=2.6e-17  Score=135.30  Aligned_cols=107  Identities=24%  Similarity=0.358  Sum_probs=92.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++....+|+++|+++.+++.++++....+. +++.++++|+..+++++++||+|++..++++
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h  198 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH  198 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence            468999999999999999886433999999999999999998876664 4799999999998888899999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +               .+..++++++.++|||||++++.++..
T Consensus       199 ~---------------~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        199 M---------------PDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             c---------------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            6               456789999999999999999887653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.74  E-value=3.9e-17  Score=127.43  Aligned_cols=109  Identities=25%  Similarity=0.439  Sum_probs=93.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..+++. ++. +|+++|+++.+++.++++....+.+++.++++|+...+++.++||+|++..+++
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  125 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR  125 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence            468999999999999999876 343 999999999999999999877767789999999988877778999999987776


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      ++               ++..++++++.++|+|||.+++.+...+.
T Consensus       126 ~~---------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~  156 (231)
T TIGR02752       126 NV---------------PDYMQVLREMYRVVKPGGKVVCLETSQPT  156 (231)
T ss_pred             cC---------------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence            54               45678999999999999999988765543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.73  E-value=6.9e-17  Score=123.02  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++....++ ++.+...|+...+++ ++||+|+++.++|++
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~  107 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALN-EDYDFIFSTVVFMFL  107 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcccc-CCCCEEEEecccccC
Confidence            46899999999999999999877 999999999999999988876665 377788887655543 579999999888876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   +.++...+++++.++|+|||++++...
T Consensus       108 -------------~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477       108 -------------QAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             -------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence                         345778999999999999999666543

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.72  E-value=3.8e-17  Score=129.46  Aligned_cols=106  Identities=20%  Similarity=0.313  Sum_probs=91.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++++++.++++....+. +++.++++|+.++. ...++||+|++..+++
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~  123 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE  123 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence            36899999999999999999876 999999999999999999887663 57899999998753 4567899999999988


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++               .+..++++++.++|||||.+++..++.
T Consensus       124 ~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        124 WV---------------ADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             hh---------------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            76               455789999999999999998776553

>PRK05785 hypothetical protein; Provisional

Probab=99.71  E-value=1.7e-18  Score=134.74  Aligned_cols=150  Identities=14%  Similarity=0.166  Sum_probs=110.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++....+|+|+|+|++|++.++++        ..++++|+.++++++++||+|++..++|++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~  123 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHAS  123 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence            468999999999999999887423999999999999998763        135789999999999999999999988765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEe-CC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK-GK  159 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  159 (201)
                                     .+..++++++.++|||.  +.+++++.|...  +.. ....            .|+.++++. +.
T Consensus       124 ---------------~d~~~~l~e~~RvLkp~--~~ile~~~p~~~--~~~-~~~~------------~y~~~~~P~~~~  171 (226)
T PRK05785        124 ---------------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDNV--IKR-KYLS------------FYLRYIMPYIAC  171 (226)
T ss_pred             ---------------CCHHHHHHHHHHHhcCc--eEEEEeCCCCcH--HHH-HHHH------------HHHHHHHHHHHH
Confidence                           56789999999999993  333444444311  100 0001            133345555 55


Q ss_pred             CCchhhhhhccCCCCCCCCccccccccccccceec
Q 028957          160 RSSADEELSQSHDKPLVPTISMFHEELEGEDYIFR  194 (201)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  194 (201)
                      ....+. ..|+|   +.++|+.|++.-+..+.+.+
T Consensus       172 ~~~~~~-~~Y~y---l~~si~~f~~~~~~~~~~~~  202 (226)
T PRK05785        172 LAGAKC-RDYKY---IYYIYERLPTNSFHREIFEK  202 (226)
T ss_pred             HhcCCh-HHHHH---HHHHHHHCCCHHHHHHHHHH
Confidence            555555 68999   99999999997776666554

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.71  E-value=3.5e-17  Score=111.72  Aligned_cols=96  Identities=31%  Similarity=0.577  Sum_probs=80.7

Q ss_pred             EEEecCCCChhhHHHHhcC---C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc-cc
Q 028957            4 VLELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT-ME   78 (201)
Q Consensus         4 vLDlG~G~G~~~~~l~~~~---~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~-l~   78 (201)
                      |||+|||+|..+..++...   + .+++++|+++++++.++++....+. +++++++|+.+++...++||+|++.+. ++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            7999999999999998773   3 3999999999999999999877654 889999999988777789999999544 88


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  113 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG  113 (201)
                      ++             ..+...++++++.++|+|||
T Consensus        80 ~~-------------~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HL-------------SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GS-------------SHHHHHHHHHHHHHTEEEEE
T ss_pred             CC-------------CHHHHHHHHHHHHHHhCCCC
Confidence            76             55789999999999999998

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.70  E-value=5.4e-16  Score=117.00  Aligned_cols=101  Identities=23%  Similarity=0.271  Sum_probs=86.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|..+..++...+. +|+++|.++.+++.++++.+..+.++++++++|+.+++. .++||+|+++..   
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---  121 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---  121 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence            478999999999999998875433 999999999999999999988887779999999988765 678999998531   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                      ..+..+++.+.+.|+|||.+++....
T Consensus       122 ----------------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        122 ----------------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ----------------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence                            34578999999999999999987644

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.70  E-value=3.7e-17  Score=126.06  Aligned_cols=103  Identities=26%  Similarity=0.390  Sum_probs=86.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-C-C----ceEEEEcccCCCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-Y-K----EVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~-~----~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      |++|||+|||+|.++..|++.|. .|+|+|+++++++.|++...... . .    ++++.+.|++..   .++||+|+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence            57899999999999999999997 99999999999999999854433 1 1    356677777664   3569999999


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .+++|+               .++..++..+.+.|||+|.+++.+.++
T Consensus       166 evleHV---------------~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  166 EVLEHV---------------KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHHHHH---------------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            998665               888999999999999999999987654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.70  E-value=2.9e-16  Score=124.85  Aligned_cols=107  Identities=17%  Similarity=0.284  Sum_probs=89.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..++.....+|+++|+++.+++.++++...  .+++.+.++|+...++++++||+|++..+++++
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~  130 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHL  130 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence            468999999999999888765323999999999999999988654  247899999998888888899999997776554


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                   ...+..++++++.++|||||.+++.++..
T Consensus       131 -------------~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        131 -------------SYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence                         23477899999999999999999887643

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.69  E-value=2.7e-16  Score=123.95  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..+++.  .+. +++++|+|+.|++.+++++...+. .+++++++|+..++++  .+|+|+++.+
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~  134 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT  134 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence            468999999999999888763  233 999999999999999999876653 3789999999877653  5899999999


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +|++             +..+...++++++++|+|||.+++.+.
T Consensus       135 l~~l-------------~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        135 LQFL-------------EPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             HHhC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9887             335578999999999999999998764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.69  E-value=3.8e-16  Score=125.75  Aligned_cols=103  Identities=20%  Similarity=0.354  Sum_probs=89.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..+++.+. +|+++|+|+.+++.++++....+. ++++...|+....+ .++||+|++..++|++
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence            35899999999999999999887 999999999999999999887776 78888888876555 5789999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                   +.++...+++++.++|+|||+++++.
T Consensus       198 -------------~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        198 -------------NRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                         34678899999999999999976653

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.69  E-value=1.8e-16  Score=125.21  Aligned_cols=102  Identities=24%  Similarity=0.400  Sum_probs=87.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++..     ...++++|+..+++++++||+|+++.+++++
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~  116 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQWC  116 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence            36899999999999999888765 99999999999999987642     3467899999888888899999999888755


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     .+...++.++.++|+|||.+++.++...
T Consensus       117 ---------------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        117 ---------------GNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             ---------------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence                           4668999999999999999999876653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=1.2e-16  Score=126.04  Aligned_cols=110  Identities=21%  Similarity=0.313  Sum_probs=97.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||.|.+++.+++....+|+|+++|+++.+.+++++...++. ++++...|..++.   +.||-|++...+++
T Consensus        73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEh  149 (283)
T COG2230          73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEH  149 (283)
T ss_pred             CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHH
Confidence            7899999999999999999984339999999999999999999988866 7999999998874   44999999999998


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR  126 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  126 (201)
                      +             ..+....+++.+.+.|+|||.+++.+...+...
T Consensus       150 v-------------g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~  183 (283)
T COG2230         150 V-------------GKENYDDFFKKVYALLKPGGRMLLHSITGPDQE  183 (283)
T ss_pred             h-------------CcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence            8             557789999999999999999999888776644

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=2e-16  Score=125.30  Aligned_cols=97  Identities=24%  Similarity=0.272  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++       ++.++++|+.++. +.++||+|+++.++|+
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~  101 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTDVVVSNAALQW  101 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCceEEEEehhhhh
Confidence            468999999999999999887543 899999999999998753       5788999988764 4578999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+..+++++++++|+|||.+++...
T Consensus       102 ~---------------~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103        102 V---------------PEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             C---------------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            6               4567899999999999999987643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.69  E-value=4.3e-16  Score=124.51  Aligned_cols=106  Identities=23%  Similarity=0.339  Sum_probs=90.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||+|..+..++.. +.. +|+++|+++.+++.++++....+.+++.++.+|+..+++++++||+|+++.++|
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~  157 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN  157 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence            579999999999988777665 443 799999999999999999887777789999999998888778999999988876


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +.               .+..++++++.++|+|||++++.+..
T Consensus       158 ~~---------------~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        158 LS---------------PDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CC---------------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            54               45578999999999999999987653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.68  E-value=4.5e-16  Score=126.95  Aligned_cols=104  Identities=21%  Similarity=0.310  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..++..++..|+|+|+++.++..++......+ ..++.++.+|+.+++. .++||+|+|..++++
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H  201 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH  201 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence            57899999999999999999887689999999998876543322211 2478999999998887 688999999988876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .               .+...+++++++.|+|||.+++.+.
T Consensus       202 ~---------------~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        202 R---------------RSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             c---------------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            5               4567899999999999999987653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.67  E-value=4.8e-16  Score=118.33  Aligned_cols=112  Identities=22%  Similarity=0.324  Sum_probs=90.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~l   77 (201)
                      .+|||+|||+|.++..++...+. .++++|+++.+++.++++....+++++.++++|+..+.   ++.+++|.|++    
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~----   93 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL----   93 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE----
Confidence            57999999999999999988655 99999999999999999988877779999999997643   34456777764    


Q ss_pred             ceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                           ++++||.+..++...  ...+++++.++|+|||.+++.+...
T Consensus        94 -----~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        94 -----NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             -----ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence                 346889765433222  2679999999999999999876544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.67  E-value=5.1e-16  Score=118.86  Aligned_cols=114  Identities=19%  Similarity=0.241  Sum_probs=90.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc-CCCC--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLP--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++...+. +|+++|+++++++.++++....+.+++.++++|+ ..++  ++.++||+|+++. 
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~-  119 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF-  119 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC-
Confidence            368999999999999999887544 8999999999999999998877777899999998 6554  5677899998642 


Q ss_pred             cceeeecCCCCCCCCCccHH--HHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           77 MEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                              ++||...+.+..  ....+++++.++|+|||.+++.+....
T Consensus       120 --------~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~  160 (202)
T PRK00121        120 --------PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG  160 (202)
T ss_pred             --------CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence                    346654332222  257899999999999999998765443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.67  E-value=1.1e-15  Score=115.02  Aligned_cols=104  Identities=28%  Similarity=0.486  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.++||+|||.|..+..+++.|. .|+++|.|+..++.+++.....++ .++..+.|+.+..++ +.||+|++..+++++
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL  107 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFP-EEYDFIVSTVVFMFL  107 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence            46899999999999999999999 899999999999999888777766 499999999887765 689999998888877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   +.+...++++++...++|||++++.++
T Consensus       108 -------------~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  108 -------------QRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             --------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence                         456788999999999999999887554

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.67  E-value=9.1e-16  Score=115.41  Aligned_cols=99  Identities=20%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+. +|+++|.++.+++.++++.+..+.++++++++|+.++. ..++||+|++.. +  
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~--  118 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L--  118 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence            578999999999999998876544 89999999999999999888777778999999998764 357899999864 3  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                      .....+++.+.++|+|||.+++..
T Consensus       119 ----------------~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       119 ----------------ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ----------------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence                            234567888899999999988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00740 methyltransferase, putative

Probab=99.66  E-value=2.2e-15  Score=118.27  Aligned_cols=106  Identities=21%  Similarity=0.252  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++..  +. +++++|+++.+++.+++++...+ ..+++++++|+..++++  .+|+|+++.+
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~  131 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT  131 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence            3689999999999999998752  23 89999999999999999887654 24689999999887654  5899999998


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|++             +.++...++++++++|+|||.+++.+..
T Consensus       132 l~~~-------------~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       132 LQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             hhhC-------------CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            8876             3456789999999999999999987643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.65  E-value=1.1e-15  Score=119.26  Aligned_cols=103  Identities=27%  Similarity=0.512  Sum_probs=89.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..+++.++. +++++|+++.+++.++++..    +++.++.+|+...++++++||+|+++.++|+.
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~  111 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC  111 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence            58999999999999999988765 79999999999999987754    36889999999888778899999999988765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     .+..++++++.++|+|||.+++.++...
T Consensus       112 ---------------~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       112 ---------------DDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             ---------------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence                           4567899999999999999998876543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=6.7e-17  Score=109.80  Aligned_cols=96  Identities=32%  Similarity=0.552  Sum_probs=64.4

Q ss_pred             EEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccceee
Q 028957            5 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         5 LDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~   81 (201)
                      ||+|||+|.++..+++..+. +++++|+|+.+++.+++++......+......+..+..  ...++||+|++..++|++ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            79999999999999988544 99999999999988888887765444444444444322  122599999999999887 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  115 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  115 (201)
                                    ++...+++++.++|+|||.+
T Consensus        80 --------------~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 --------------EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --------------S-HHHHHHHHTTT-TSS-EE
T ss_pred             --------------hhHHHHHHHHHHHcCCCCCC
Confidence                          67789999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00452 methyltransferase, putative

Probab=99.64  E-value=1.9e-15  Score=122.37  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..++..++..|+|+|+++.++..++..-... ...++.+...++.+++.. .+||+|++.+++++
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H  200 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH  200 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence            5789999999999999998888768999999999987654322111 124678888888877653 58999999999877


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+...++++++++|+|||.+++.+.
T Consensus       201 ~---------------~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       201 R---------------KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             c---------------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            6               5667899999999999999998754

Known examples to date are restricted to the proteobacteria.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.64  E-value=2.6e-15  Score=128.76  Aligned_cols=105  Identities=22%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..++.....+|+|+|+|+.+++.++++..... .++.+.++|+...++++++||+|++..+++++
T Consensus       267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~  345 (475)
T PLN02336        267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTILHI  345 (475)
T ss_pred             CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence            46899999999999998887633389999999999999988765433 47899999998887777899999998888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     .+..+++++++++|+|||.+++.++.
T Consensus       346 ---------------~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        346 ---------------QDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             ---------------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence                           46679999999999999999988764

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=2.6e-15  Score=119.08  Aligned_cols=98  Identities=23%  Similarity=0.400  Sum_probs=83.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.++++.     +++.++.+|+.... +.++||+|+++.++|+
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~  105 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-PPQALDLIFANASLQW  105 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-CCCCccEEEEccChhh
Confidence            46899999999999999988743 39999999999999998764     46789999987654 3468999999999886


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +               .+..++++++.++|+|||.+++..
T Consensus       106 ~---------------~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        106 L---------------PDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             C---------------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence            6               456789999999999999988764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.63  E-value=2.1e-15  Score=120.13  Aligned_cols=106  Identities=28%  Similarity=0.397  Sum_probs=84.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||.|.++..+++. |. +|+++.+|++..+.+++++...++ +++.+...|..+++   .+||.|++..++.
T Consensus        63 G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~E  138 (273)
T PF02353_consen   63 GDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFE  138 (273)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGG
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechh
Confidence            689999999999999999998 66 999999999999999999998885 46899999988764   3899999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++             ..+....+++++.++|+|||++++.....+
T Consensus       139 hv-------------g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~  170 (273)
T PF02353_consen  139 HV-------------GRKNYPAFFRKISRLLKPGGRLVLQTITHR  170 (273)
T ss_dssp             GT-------------CGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred             hc-------------ChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            76             446789999999999999999987665443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.63  E-value=5.8e-15  Score=110.08  Aligned_cols=110  Identities=24%  Similarity=0.434  Sum_probs=88.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++..++. +|+++|+++.+++.+++++..++..+++++..|+.. ..+.++||+|+++-.++.
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBT
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhc
Confidence            368999999999999999999886 899999999999999999999887669999999876 334689999999765542


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      -          .........++++...+.|+|||.++++...
T Consensus       111 ~----------~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  111 G----------GDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             T----------SHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             c----------cccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            2          0113345789999999999999999776544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.63  E-value=4.2e-15  Score=122.63  Aligned_cols=111  Identities=18%  Similarity=0.286  Sum_probs=92.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      ..+||+|||+|.++..+|...+. .++|+|+++.++..+.++....+++++.++++|+..+  .++++++|.|++     
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l-----  198 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFV-----  198 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEE-----
Confidence            47999999999999999998665 9999999999999999999888888999999998754  366788888875     


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                          ++++||.+.++..-....+++++.++|+|||.+.+.+-.
T Consensus       199 ----nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        199 ----HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             ----eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence                357899765541112368999999999999999987644

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.63  E-value=1e-14  Score=102.53  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=82.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++....+.+++.++..|+.. .+....+||+|++.... 
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-   98 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG-   98 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc-
Confidence            368999999999999999987543 999999999999999999887776788999888764 22224689999975432 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                       ....++++.+.+.|+|||.+++..
T Consensus        99 -----------------~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        99 -----------------GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             -----------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence                             334689999999999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06922 hypothetical protein; Provisional

Probab=99.63  E-value=5.5e-15  Score=127.98  Aligned_cols=117  Identities=18%  Similarity=0.327  Sum_probs=92.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|..+..++...+. +++|+|+++.|++.++++....+ .++.++++|+.+++  +++++||+|+++.++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence            478999999999999888876544 99999999999999998876544 36788999998876  677899999999999


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+++...  |+.....+..+..+++++++++|||||.+++.+.
T Consensus       498 H~L~syI--p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        498 HELFSYI--EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             Hhhhhhc--ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8763110  1100111346789999999999999999998764

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.62  E-value=1.6e-15  Score=111.32  Aligned_cols=97  Identities=29%  Similarity=0.520  Sum_probs=80.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +++++|+++.+++.          .++.....+......+.++||+|++..+++++
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~   91 (161)
T PF13489_consen   23 GKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL   91 (161)
T ss_dssp             TSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence            46899999999999999988888 99999999999888          13344444333444567899999999999887


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     ++...+++++.++|||||++++.++...
T Consensus        92 ---------------~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   92 ---------------PDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             ---------------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             ---------------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence                           5789999999999999999999887653

...

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.62  E-value=4.3e-15  Score=115.36  Aligned_cols=104  Identities=22%  Similarity=0.359  Sum_probs=88.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|||+|||+|..+..+++..+. +++++|+++++++.+++++...+. ++++++..|+...+.+ ++||+|++..++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            57999999999999999887543 899999999999999999877653 4689999998765554 58999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +               .+...+++++.++|+|||.+++.++.
T Consensus        80 ~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       80 I---------------KDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             C---------------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            6               45679999999999999999987753

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.62  E-value=2.8e-15  Score=104.66  Aligned_cols=113  Identities=25%  Similarity=0.409  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. .+++++++|+....  ++.++||+|+++-.+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            679999999999999999999834999999999999999999988764 57999999998754  677999999986444


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...       ........+....+++++.+.|+|||.++++.+
T Consensus        81 ~~~-------~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPR-------SGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSB-------TT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-------cccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            211       001111223567999999999999999988753

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.62  E-value=4.4e-15  Score=121.26  Aligned_cols=102  Identities=25%  Similarity=0.335  Sum_probs=86.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.. ..+|+++|+++++++.++++...   .+++++.+|+.+++++.++||+|+++.++++
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~  190 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSIEY  190 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence            3589999999999998887763 23899999999999999987542   4688999999988888889999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+..++++++.++|+|||++++...
T Consensus       191 ~---------------~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        191 W---------------PDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             C---------------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            5               3456799999999999999887654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.61  E-value=9.8e-15  Score=111.83  Aligned_cols=102  Identities=21%  Similarity=0.378  Sum_probs=84.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|..+..++... ..+++|+|+|+++++.++++.     +++.+.++|+.+ ++++++||+|+++.++++
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h  117 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIH  117 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence            4689999999999999998863 339999999999999998764     356788899887 777889999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +             +.++..++++++.+++  ++.+++.++..+
T Consensus       118 l-------------~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       118 I-------------NPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             C-------------CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            6             3367889999999997  467777766544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.61  E-value=4.5e-15  Score=110.73  Aligned_cols=106  Identities=25%  Similarity=0.364  Sum_probs=88.8

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCCCC-CCCCceeEEEecccccee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP-FSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~v~~~~~l~~~   80 (201)
                      .|||+|||||..-...-......|+++|+++.|-+.+.+.++.....++. ++.++.++++ ++++++|+|++..++-  
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC--  156 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC--  156 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe--
Confidence            47999999998765543232239999999999999999988877655666 8999999987 7899999999988773  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   +.++..+.|+++.++|+|||++++.++...
T Consensus       157 -------------Sve~~~k~L~e~~rlLRpgG~iifiEHva~  186 (252)
T KOG4300|consen  157 -------------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAG  186 (252)
T ss_pred             -------------ccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence                         447889999999999999999999987654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.60  E-value=3.3e-14  Score=106.81  Aligned_cols=119  Identities=20%  Similarity=0.278  Sum_probs=88.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +++|||+|||+|.++..++..+. +|+++|+++++++.+++++...+. ++.++.+|+....  .++||+|+++..++..
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLPL   95 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCCC
Confidence            46899999999999999999887 999999999999999999887664 6888999987643  4589999998766533


Q ss_pred             eecC-CCCCCC-----CCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNS-GDPWNP-----QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~-~~~~~~-----~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      -... ..+|.+     ..........+++++.++|+|||++++......
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            1000 001100     001122367899999999999999988765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.60  E-value=5e-16  Score=115.62  Aligned_cols=145  Identities=24%  Similarity=0.319  Sum_probs=104.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-C-CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||.|.+...+.........|+|++++.+..+.++       .+.++++|+.. + .+++++||.|+++.++.
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ   86 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQ   86 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence            579999999999999988875333999999999988888764       67899999986 3 48899999999999997


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG  158 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (201)
                      ++               ....++|+++.|+   |...++..++-.+            |..++.           .+-+|
T Consensus        87 ~~---------------~~P~~vL~EmlRV---gr~~IVsFPNFg~------------W~~R~~-----------l~~~G  125 (193)
T PF07021_consen   87 AV---------------RRPDEVLEEMLRV---GRRAIVSFPNFGH------------WRNRLQ-----------LLLRG  125 (193)
T ss_pred             hH---------------hHHHHHHHHHHHh---cCeEEEEecChHH------------HHHHHH-----------HHhcC
Confidence            76               6678888888776   3444544332222            222221           34456


Q ss_pred             CCCchhhhhhccCCCCCCCCccccccccccccceecccc
Q 028957          159 KRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNI  197 (201)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  197 (201)
                      +...++. .+|.|  |..+.|+ +.+..++++.-...|+
T Consensus       126 rmPvt~~-lPy~W--YdTPNih-~~Ti~DFe~lc~~~~i  160 (193)
T PF07021_consen  126 RMPVTKA-LPYEW--YDTPNIH-LCTIKDFEDLCRELGI  160 (193)
T ss_pred             CCCCCCC-CCCcc--cCCCCcc-cccHHHHHHHHHHCCC
Confidence            6676666 78888  7777776 6666666665544443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.60  E-value=7.9e-15  Score=109.49  Aligned_cols=104  Identities=23%  Similarity=0.374  Sum_probs=83.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .++||+|||.|.++..++.+. ..++++|+++..++.+++++...  ++|++.+.|+... .+.++||+|+++.+++++ 
T Consensus        45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL-  119 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL-  119 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS-
T ss_pred             ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcC-
Confidence            468999999999999999884 49999999999999999998764  6999999998764 457899999999999988 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                 .+.+++..++.++...|+|||.+++..+.
T Consensus       120 -----------~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  120 -----------DDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             -----------SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             -----------CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence                       34578899999999999999999987653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK08317 hypothetical protein; Provisional

Probab=99.60  E-value=1.7e-14  Score=112.55  Aligned_cols=104  Identities=25%  Similarity=0.345  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++... +. +++++|+++.+++.++++... ..+++.+...|+...+++.++||+|++..+++
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~   98 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ   98 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceEEEEechhh
Confidence            4689999999999999998874 33 999999999999999887332 23578999999988777778999999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++               .+..++++++.++|+|||.+++.+.
T Consensus        99 ~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         99 HL---------------EDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             cc---------------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence            66               4568899999999999999988764

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.60  E-value=1.6e-14  Score=111.28  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh------------cCCCceEEEEcccCCCCCC-CCc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL------------KGYKEVKVLEADMLDLPFS-NDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~------------~~~~~i~~~~~d~~~~~~~-~~~   67 (201)
                      +.+|||+|||.|..+..++.+|. .|+|+|+|+.+++.+.+....            ....+++++++|+..++.. .+.
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~  113 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP  113 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence            35899999999999999999998 899999999999976432110            0113688999999886532 357


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ||.|+...+++++             +.+.....++.+.++|+|||++++.++.
T Consensus       114 fD~i~D~~~~~~l-------------~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       114 VDAVYDRAALIAL-------------PEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             cCEEEechhhccC-------------CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            9999988888776             4567788999999999999997777664

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.58  E-value=2.5e-14  Score=111.76  Aligned_cols=108  Identities=27%  Similarity=0.419  Sum_probs=90.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++..++  .+++++|+++.+++.+++++...+ ..++.++.+|+...+.+.++||+|+++.++
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l  131 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL  131 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence            36899999999999999988864  499999999999999999876543 246899999998877667889999998877


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |+.               .+...+++++.++|+|||.+++.+...+
T Consensus       132 ~~~---------------~~~~~~l~~~~~~L~~gG~li~~~~~~~  162 (239)
T PRK00216        132 RNV---------------PDIDKALREMYRVLKPGGRLVILEFSKP  162 (239)
T ss_pred             ccC---------------CCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence            655               4567899999999999999998876544

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.58  E-value=3.1e-14  Score=110.06  Aligned_cols=106  Identities=26%  Similarity=0.446  Sum_probs=89.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|..+..+++..+.  +++++|+++.+++.++++..  ...++.++.+|+.+.+++.++||+|+++..++
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~  117 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGLR  117 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence            468999999999999999888663  89999999999999998875  22478999999988777677899999987776


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +.               .+...+++++.+.|+|||++++.+...+
T Consensus       118 ~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~  147 (223)
T TIGR01934       118 NV---------------TDIQKALREMYRVLKPGGRLVILEFSKP  147 (223)
T ss_pred             Cc---------------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            54               5678899999999999999998876543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.57  E-value=8.1e-14  Score=114.29  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|||+|.++.+++..+. .++|+|+++.+++.++.++...+..++.+.++|+.+++.+.++||+|+++..+..-
T Consensus       183 g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~  261 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS  261 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence            46899999999999998887766 89999999999999999998888767889999999988777899999986443211


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  125 (201)
                      ...      ..........++++++.++|+|||++++...+....
T Consensus       262 ~~~------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~  300 (329)
T TIGR01177       262 TTA------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDL  300 (329)
T ss_pred             ccc------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCH
Confidence            000      000011336899999999999999998877655433

This family is found exclusively in the Archaea.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.57  E-value=1.6e-14  Score=105.83  Aligned_cols=112  Identities=29%  Similarity=0.528  Sum_probs=95.6

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +|||+|||+|.+...+++.++. ..+|+|.++.+++.|+...+..+.++ |+|.+.|+.+..+..++||+|+-.+.++++
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi  149 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI  149 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence            8999999999999999999877 69999999999999998888888766 999999999866777999999999999998


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      -..++.|-       ..+..-+..+.++|+|||++++..++
T Consensus       150 sLs~d~~~-------~r~~~Y~d~v~~ll~~~gifvItSCN  183 (227)
T KOG1271|consen  150 SLSPDGPV-------GRLVVYLDSVEKLLSPGGIFVITSCN  183 (227)
T ss_pred             ecCCCCcc-------cceeeehhhHhhccCCCcEEEEEecC
Confidence            66655431       23355677888999999999987765

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.57  E-value=1.8e-14  Score=114.55  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=82.4

Q ss_pred             CcEEEecCCCCh----hhHHHHhcCC-----C-eEEEEECCHHHHHHHHHHHhh----cC--------------------
Q 028957            2 TSVLELGCGNSR----LSEGLYNDGI-----T-AITCIDLSAVAVEKMQERLLL----KG--------------------   47 (201)
Q Consensus         2 ~~vLDlG~G~G~----~~~~l~~~~~-----~-~v~~vD~~~~~~~~~~~~~~~----~~--------------------   47 (201)
                      .+|||+|||+|.    ++..+++.+.     . +|+|+|+|+.+++.|++..-.    .+                    
T Consensus       101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~  180 (264)
T smart00138      101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK  180 (264)
T ss_pred             EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence            489999999996    4444444321     2 899999999999999875310    00                    


Q ss_pred             ---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           48 ---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        48 ---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                         ..++.|.++|+.+.+.+.++||+|+|.++++++             ..+...++++++++.|+|||.+++..
T Consensus       181 ~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-------------~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      181 PELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-------------DEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             hHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-------------CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence               136899999999877667899999999999876             44677899999999999999999753

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=6e-14  Score=106.12  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=81.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++....+..+++++++|+.. .+ .++||+|++....+ 
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~-  108 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGGSGG-  108 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECCCcc-
Confidence            468999999999999999887654 999999999999999999887776678999988753 23 35799999864432 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                       ....+++.+.+.|+|||++++...
T Consensus       109 -----------------~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        109 -----------------NLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             -----------------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence                             235688999999999999987643

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=4.6e-14  Score=108.83  Aligned_cols=98  Identities=21%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|..+..+++. +. .+|+++|+++++++.+++++...+..++.++++|+.....+.++||+|++....+
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~  156 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP  156 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence            478999999999999988876 33 2999999999999999999988887789999999876555567899999865542


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                     +.+.+.+.|+|||++++..
T Consensus       157 ~---------------------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        157 D---------------------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             c---------------------chHHHHHhhCCCcEEEEEE
Confidence            2                     2245677899999988753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=1.3e-13  Score=105.76  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|..+..+++..  ..+|+++|+++++++.+++++...+.. +++++.+|+.......++||+|++...+
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  152 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA  152 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence            4689999999999998888763  238999999999999999998877753 5899999987644345789999987665


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +++                     .+++.+.|+|||++++..
T Consensus       153 ~~~---------------------~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        153 STI---------------------PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             chh---------------------hHHHHHhcCcCcEEEEEE
Confidence            332                     246789999999988754

>PRK06202 hypothetical protein; Provisional

Probab=99.55  E-value=5.2e-14  Score=110.00  Aligned_cols=105  Identities=22%  Similarity=0.275  Sum_probs=81.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++..    ++. +++++|+++++++.++++....   ++.+...++..++.++++||+|+++.
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEECC
Confidence            358999999999998888752    443 8999999999999998875432   46677777666665678999999999


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++|++             ..++..++++++.++++  |.+++.+...+
T Consensus       138 ~lhh~-------------~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        138 FLHHL-------------DDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             eeecC-------------ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            99887             23456789999999997  56666666554

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.55  E-value=7.8e-14  Score=107.81  Aligned_cols=98  Identities=21%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++... . +|+++|+++++++.+++++...+.++++++++|+........+||+|++.....
T Consensus        78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~  157 (215)
T TIGR00080        78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP  157 (215)
T ss_pred             cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence            47899999999999999988743 2 699999999999999999998888889999999876543446899999754332


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                           .+.+.+.+.|+|||++++..
T Consensus       158 ---------------------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       158 ---------------------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             ---------------------cccHHHHHhcCcCcEEEEEE
Confidence                                 23345788999999988754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.55  E-value=1e-13  Score=111.41  Aligned_cols=135  Identities=13%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+. .++.++++|+.. .++.++||+|+++-....
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVD  201 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCC
Confidence            57999999999999999987544 999999999999999999988775 469999999865 234568999998632210


Q ss_pred             ------e----eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCce
Q 028957           80 ------L----FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTW  137 (201)
Q Consensus        80 ------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~  137 (201)
                            +    ..+....+.-...+......+++.+.+.|+|||++++............+....+.|
T Consensus       202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~  269 (284)
T TIGR03533       202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW  269 (284)
T ss_pred             ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence                  0    000000000011223446788999999999999998765433322223344444555

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.55  E-value=6.9e-14  Score=113.60  Aligned_cols=105  Identities=13%  Similarity=0.205  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|. +.+++.++++....+. ++++++.+|+.+.+++  .+|+|+++.++|
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~lh  226 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRILY  226 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhhhh
Confidence            368999999999999999998765 8999997 7899999998887764 4799999999865554  369999888887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .+             +.+...++++++++.|+|||++++.++.
T Consensus       227 ~~-------------~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       227 SA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             cC-------------ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            64             3456689999999999999999998763

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.55  E-value=9e-14  Score=115.08  Aligned_cols=107  Identities=19%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC---CceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      .+|||+|||+|.++..+++..+. +|+++|.|+.+++.+++++..++.   .+++++..|+... .+..+||+|+|+-.+
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPf  308 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPF  308 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCc
Confidence            48999999999999999988765 999999999999999999876652   3678888887652 334689999998887


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |....          -......++++.+.+.|+|||.++++.
T Consensus       309 h~~~~----------~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        309 HQQHA----------LTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccCcc----------CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            75410          022345789999999999999999885

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.55  E-value=5.3e-14  Score=120.77  Aligned_cols=104  Identities=25%  Similarity=0.301  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++...  ..+++.++++|+..  ++++.++||+|+++.+++
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~  114 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM  114 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence            36899999999999999998865 99999999999988765322  23578999999863  456778999999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++             ..++..++++++.++|+|||++++.+.
T Consensus       115 ~l-------------~~~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        115 YL-------------SDKEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             hC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            77             335578999999999999999988754

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.55  E-value=5.8e-14  Score=117.05  Aligned_cols=104  Identities=29%  Similarity=0.373  Sum_probs=85.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |.+|||+|||+|.++..+++....+|+++|+|+++++.++++...  . .+++...|+..+   .++||.|++..+++++
T Consensus       168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv  241 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL---NGQFDRIVSVGMFEHV  241 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence            468999999999999999876323999999999999999988743  2 478888887664   4689999998888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   +......+++++.++|||||.+++.++..+
T Consensus       242 -------------g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        242 -------------GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             -------------ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence                         335678899999999999999998776543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.55  E-value=2.2e-14  Score=110.88  Aligned_cols=111  Identities=20%  Similarity=0.357  Sum_probs=94.0

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEeccccc
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATME   78 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~l~   78 (201)
                      .+||||||.|.++..+|+..+. .++|+|+....+..+.+.+...+++|+.+++.|+..+-   .++++.         +
T Consensus        51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl---------~  121 (227)
T COG0220          51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSL---------D  121 (227)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCe---------e
Confidence            6899999999999999999887 99999999999999999999999889999999997642   233354         4


Q ss_pred             eeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .++.+|++||.++.+++..  ...+++.+.+.|+|||.+.+.+-..
T Consensus       122 ~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         122 KIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             EEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            4556689999998887766  4689999999999999999876543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.55  E-value=3.6e-14  Score=107.84  Aligned_cols=110  Identities=26%  Similarity=0.406  Sum_probs=84.8

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C--CCCCceeEEEeccccc
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--FSNDCFDVVIEKATME   78 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v~~~~~l~   78 (201)
                      .+||+|||.|.++..+|...+. .++|+|+....+..+.++....+++|+.++++|+..+ .  ++++++|.|.      
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~------   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY------   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE------
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE------
Confidence            5899999999999999998776 9999999999999999999888899999999999872 2  4446655555      


Q ss_pred             eeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                         .++++||.+..++...  ...+++.+.++|+|||.+.+.+-.
T Consensus        94 ---i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   94 ---INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             ---EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             ---EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence               4578999987766664  469999999999999999988754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.53  E-value=1.7e-13  Score=112.50  Aligned_cols=107  Identities=24%  Similarity=0.357  Sum_probs=87.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..+++..+. +|+++|+++.+++.+++++..+++ ...++..|+...  ..++||+|+++..+|..
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD--IKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc--cCCCccEEEECCCccCC
Confidence            47999999999999999988664 999999999999999999988765 456777787652  25789999999888753


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..          .......++++++.+.|+|||.++++...
T Consensus       275 ~~----------~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        275 IQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             cc----------ccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            10          12356789999999999999999887654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.53  E-value=2e-13  Score=109.95  Aligned_cols=101  Identities=21%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++.+++.++++...++.. ++.+...+..  ....++||+|+++...  
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~--  235 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA--  235 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH--
Confidence            4789999999999999988887669999999999999999998877643 3555555532  2335689999986543  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                      ..+..++.++.++|+|||++++....
T Consensus       236 ----------------~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       236 ----------------EVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             ----------------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence                            34568999999999999999987654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.52  E-value=2.2e-13  Score=100.99  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=88.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+++|+|||||..+.+++..++. +|+++|-++++++..++|....+.+|+.++.+++-..-....++|.|+..+.   
T Consensus        35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg---  111 (187)
T COG2242          35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG---  111 (187)
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC---
Confidence            578999999999999999977776 9999999999999999999999999999999999764222237999997554   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      ..+..+++.+...|+|||+++....+-
T Consensus       112 ----------------~~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242         112 ----------------GNIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             ----------------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence                            456889999999999999999765543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.52  E-value=1.8e-13  Score=105.83  Aligned_cols=106  Identities=21%  Similarity=0.178  Sum_probs=84.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh------------cCCCceEEEEcccCCCCCC-CCc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL------------KGYKEVKVLEADMLDLPFS-NDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~------------~~~~~i~~~~~d~~~~~~~-~~~   67 (201)
                      +.+|||+|||.|..+..++..|. +|+|+|+++.+++.+.+....            ....++++.++|+..++.. ...
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~  116 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD  116 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence            35899999999999999999998 899999999999976432110            0124688999999887532 358


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ||.|+...+++++             +.+...+.++.+.++|+|||++++.++
T Consensus       117 fd~v~D~~~~~~l-------------~~~~R~~~~~~l~~lL~pgG~~~l~~~  156 (218)
T PRK13255        117 VDAVYDRAALIAL-------------PEEMRERYVQQLAALLPAGCRGLLVTL  156 (218)
T ss_pred             eeEEEehHhHhhC-------------CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            9999998888876             457788999999999999998665433

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.52  E-value=1.5e-13  Score=106.68  Aligned_cols=105  Identities=26%  Similarity=0.340  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..++.+...|+...+.. .++||+|++..++++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            46899999999999999988776 7999999999999999988766544688888888765433 378999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .               .+...+++++.++|+|||.+++....
T Consensus       125 ~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       125 V---------------PDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             C---------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            5               45678999999999999998877654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.52  E-value=1.7e-13  Score=109.46  Aligned_cols=105  Identities=19%  Similarity=0.205  Sum_probs=83.4

Q ss_pred             CCcEEEecCCCChhhHHHHh--cCCC-eEEEEECCHHHHHHHHHHHhh-cCC-CceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYN--DGIT-AITCIDLSAVAVEKMQERLLL-KGY-KEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~--~~~~-~v~~vD~~~~~~~~~~~~~~~-~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +++|+|+|||.|.++..++.  ..+. +++++|.++++++.|++.+.. .++ ++++|.++|+.+.....+.||+|++. 
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-  202 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-  202 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence            57899999998866554433  3444 899999999999999999854 443 46999999998754335789999998 


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +++.+             ..++..++++++.+.|+|||.+++..
T Consensus       203 ALi~~-------------dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 ALVGM-------------DKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ccccc-------------ccccHHHHHHHHHHhcCCCcEEEEec
Confidence            66544             33677899999999999999999875

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1e-13  Score=110.44  Aligned_cols=102  Identities=25%  Similarity=0.397  Sum_probs=80.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|-+++.+++.|..+++|+|+++.+++.+++|...++++. ++....+.... ...++||+|++|=..  
T Consensus       163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANILA--  239 (300)
T COG2264         163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANILA--  239 (300)
T ss_pred             CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhhH--
Confidence            67999999999999999999999899999999999999999999887643 21222222111 223689999987532  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                      +-+.++...+.+.++|||++++...-
T Consensus       240 ----------------~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         240 ----------------EVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             ----------------HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence                            34578999999999999999987643

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.52  E-value=2.4e-13  Score=107.45  Aligned_cols=96  Identities=24%  Similarity=0.379  Sum_probs=75.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++.+++.++++...++. .++.+..+        +.+||+|+++...  
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~~--  189 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANILA--  189 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCcH--
Confidence            578999999999999988887776799999999999999999887664 22332222        1279999986432  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      .....+++++.++|+|||.+++.....
T Consensus       190 ----------------~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        190 ----------------NPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             ----------------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence                            345688999999999999999876543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.52  E-value=2.1e-13  Score=105.59  Aligned_cols=99  Identities=23%  Similarity=0.322  Sum_probs=81.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++..+. +++|+|++++++..+++++...+. .++.+.++|+...+   ++||+|++..++++
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~  131 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH  131 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence            46899999999999999988765 999999999999999999876653 47899999987764   78999999877765


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +             ..++..++++++.+++++++.+.
T Consensus       132 ~-------------~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       132 Y-------------PASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             C-------------CHHHHHHHHHHHHHHhCCCEEEE
Confidence            4             23567889999999988765544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.51  E-value=4e-14  Score=106.47  Aligned_cols=99  Identities=25%  Similarity=0.322  Sum_probs=86.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|.|+|||+|..+..++++.+. .++|+|.|++|++.|.+++     ++++|..+|+.+.. +....|+++++.+||++
T Consensus        32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWl  105 (257)
T COG4106          32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK-PEQPTDLLFANAVLQWL  105 (257)
T ss_pred             ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC-CCCccchhhhhhhhhhc
Confidence            57999999999999999999776 9999999999999998774     58899999998754 35678999999999988


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     ++-..++.++...|.|||.+-+..+.
T Consensus       106 ---------------pdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106         106 ---------------PDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             ---------------cccHHHHHHHHHhhCCCceEEEECCC
Confidence                           45567899999999999999886543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.51  E-value=9.8e-14  Score=105.96  Aligned_cols=135  Identities=18%  Similarity=0.283  Sum_probs=101.3

Q ss_pred             cEEEecCCCChhhHHHHhcCCC---eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC----CCCCCCceeEEEecc
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKA   75 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~---~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~v~~~~   75 (201)
                      +|||+|||.|.....+++..+.   .++++|.++.+++..+++..... .++...+.|+..    .+...+++|++++.+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEE
Confidence            6899999999999999887443   89999999999999998755443 355555566553    235678999999999


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYF  151 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (201)
                      ++.++             +.+...++++++.++|||||.+++.++.........+.....--.+.|..-.+...||
T Consensus       153 vLSAi-------------~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~Yf  215 (264)
T KOG2361|consen  153 VLSAI-------------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYF  215 (264)
T ss_pred             EEecc-------------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeee
Confidence            99888             5678899999999999999999999998877665555543332233444333333344

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.51  E-value=1.4e-13  Score=112.23  Aligned_cols=114  Identities=25%  Similarity=0.328  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----------CCceEEEEcccCCCC----CCC-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----------YKEVKVLEADMLDLP----FSN-   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----------~~~i~~~~~d~~~~~----~~~-   65 (201)
                      +.+|||||||.|+.+.-+...+...++|+|++...++.|+++.....          .-...++.+|.....    +.. 
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~  142 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR  142 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred             CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence            46899999999999988888888899999999999999999982210          013567888877531    333 


Q ss_pred             -CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957           66 -DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus        66 -~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  125 (201)
                       .+||+|-|.+++|+.|           ++.+..+.+++++...|+|||+++.+++.....
T Consensus       143 ~~~FDvVScQFalHY~F-----------ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  143 SRKFDVVSCQFALHYAF-----------ESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             TS-EEEEEEES-GGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             CCCcceeehHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence             5999999999999997           566788899999999999999999888765443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.51  E-value=9.9e-14  Score=110.90  Aligned_cols=96  Identities=29%  Similarity=0.497  Sum_probs=78.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCC----CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~----~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      .+|||+|||+|.++..++....    ..++|+|+|+.+++.+.++.     +++.+.++|+.++++++++||+|++... 
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~-  160 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA-  160 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC-
Confidence            5799999999999999876532    27999999999999997653     4788999999998988899999997422 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                           ...++++.++|+|||++++..+...+
T Consensus       161 ---------------------~~~~~e~~rvLkpgG~li~~~p~~~~  186 (272)
T PRK11088        161 ---------------------PCKAEELARVVKPGGIVITVTPGPRH  186 (272)
T ss_pred             ---------------------CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence                                 12357889999999999988766543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.51  E-value=3e-15  Score=110.54  Aligned_cols=140  Identities=19%  Similarity=0.247  Sum_probs=103.1

Q ss_pred             EEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHH
Q 028957           27 TCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE  103 (201)
Q Consensus        27 ~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (201)
                      +|+|+|++|++.|+++.....   .++++++++|+.++++++++||+|++..++|++               .+..++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---------------~d~~~~l~   65 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---------------VDRLRAMK   65 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---------------CCHHHHHH
Confidence            489999999999987764321   347999999999999988999999999888766               56789999


Q ss_pred             HHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCCCchhhhhhccCCCCCCCCccccc
Q 028957          104 GVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFH  183 (201)
Q Consensus       104 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  183 (201)
                      +++++|||||.+++.++..+....   ......|....           ...+-+. ..... ..|+|   +..+|..|+
T Consensus        66 ei~rvLkpGG~l~i~d~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~-~~~~~-~~y~y---l~~si~~f~  126 (160)
T PLN02232         66 EMYRVLKPGSRVSILDFNKSNQSV---TTFMQGWMIDN-----------VVVPVAT-VYDLA-KEYEY---LKYSINGYL  126 (160)
T ss_pred             HHHHHcCcCeEEEEEECCCCChHH---HHHHHHHHccc-----------hHhhhhH-HhCCh-HHHHh---HHHHHHHCc
Confidence            999999999999999887654211   10011111000           1111122 22333 47888   999999999


Q ss_pred             cccccccceeccccCCC
Q 028957          184 EELEGEDYIFRTNIDEM  200 (201)
Q Consensus       184 ~~~~~~~~~~~~~~~~~  200 (201)
                      +.-+..+.|.+.||.++
T Consensus       127 ~~~el~~ll~~aGF~~~  143 (160)
T PLN02232        127 TGEELETLALEAGFSSA  143 (160)
T ss_pred             CHHHHHHHHHHcCCCcc
Confidence            99999999999999865

>PRK14967 putative methyltransferase; Provisional

Probab=99.50  E-value=3.4e-13  Score=104.80  Aligned_cols=119  Identities=23%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+. ++.++.+|+... ++.++||+|+++..+...
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA-VEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh-ccCCCeeEEEECCCCCCC
Confidence            368999999999999999887655999999999999999999877664 578888888653 446789999986443211


Q ss_pred             eec------CCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVN------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~------~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...      ...+|............+++++.++|+|||++++....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            000      00012111222334678899999999999999876443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=2.2e-13  Score=108.07  Aligned_cols=106  Identities=22%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||||||+|+++..++..|++.|+|+|.+....-..+-.-.-.+. ..+..+..-+.+++. .+.||+|+|.+++.|
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH  194 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH  194 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence            689999999999999999999998999999988766553322111221 123344445666666 688999999998876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .               .+....|.+++..|++||.+++.+...
T Consensus       195 r---------------r~Pl~~L~~Lk~~L~~gGeLvLETlvi  222 (315)
T PF08003_consen  195 R---------------RSPLDHLKQLKDSLRPGGELVLETLVI  222 (315)
T ss_pred             c---------------CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence            5               677889999999999999999877643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.50  E-value=1.3e-13  Score=109.19  Aligned_cols=113  Identities=26%  Similarity=0.342  Sum_probs=92.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-C-----CceEEEEcccCCC------CCCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-Y-----KEVKVLEADMLDL------PFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~-----~~i~~~~~d~~~~------~~~~~~~   68 (201)
                      ++.+++||||.|+.++-+-.++...++|+|+....++.|+++..... .     -.+.++++|.+..      ++++.+|
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f  197 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF  197 (389)
T ss_pred             ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence            35689999999999999988888899999999999999999876443 1     1367899997642      3445569


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      |+|-|.+++|..|           +..+..+-++.++.+.|+|||.++-..+....
T Consensus       198 DivScQF~~HYaF-----------etee~ar~~l~Nva~~LkpGG~FIgTiPdsd~  242 (389)
T KOG1975|consen  198 DIVSCQFAFHYAF-----------ETEESARIALRNVAKCLKPGGVFIGTIPDSDV  242 (389)
T ss_pred             ceeeeeeeEeeee-----------ccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence            9999999999886           56678899999999999999999977665443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.49  E-value=4.5e-13  Score=108.64  Aligned_cols=119  Identities=15%  Similarity=0.219  Sum_probs=86.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+. .++.++++|+.+ .++.++||+|+++-.+..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            57999999999999999887554 999999999999999999987775 469999999865 233468999998632210


Q ss_pred             ------e----eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 ------L----FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                            +    ...+...+.-...+......+++++.+.|+|||.+++....
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                  0    00000001111123345678999999999999999875443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.49  E-value=1.2e-13  Score=106.15  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=77.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      +.+|||+|||+|.++..+++.. . ..|+++|+++ +          ...+++.++++|+.+.+        +..++||+
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            4689999999999999998874 3 2899999987 1          12357899999998743        55678999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      |+++.+.+..    +.|..+.+........+++++.++|+|||.+++..+....
T Consensus       121 V~S~~~~~~~----g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~  170 (209)
T PRK11188        121 VMSDMAPNMS----GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG  170 (209)
T ss_pred             EecCCCCccC----CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence            9987655432    1211111111112367899999999999999987776544

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.49  E-value=2.5e-13  Score=108.97  Aligned_cols=101  Identities=23%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|||||-+++..++.|..+|+++|+++.+++.+++|...+++.. ++.....  ......+||+|++|-..   
T Consensus       162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~--~~~~~~~~dlvvANI~~---  235 (295)
T PF06325_consen  162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLS--EDLVEGKFDLVVANILA---  235 (295)
T ss_dssp             TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCT--SCTCCS-EEEEEEES-H---
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEe--cccccccCCEEEECCCH---
Confidence            57999999999999999999998899999999999999999999988644 3322221  22334899999987543   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .-+..++..+.+.|+|||.+++.....
T Consensus       236 ---------------~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  236 ---------------DVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             ---------------HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             ---------------HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence                           445788899999999999999876543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.48  E-value=1.1e-12  Score=101.21  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..++.... +++++|.++++++.+++++...+..++.++.+|+.......++||+|++...++  
T Consensus        79 ~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~--  155 (212)
T PRK00312         79 GDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP--  155 (212)
T ss_pred             CCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch--
Confidence            46899999999999988877754 899999999999999999988887789999999865323347899999865432  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                         .+.+.+.+.|+|||.+++...
T Consensus       156 -------------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        156 -------------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             -------------------hhhHHHHHhcCCCcEEEEEEc
Confidence                               223567889999999887654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.48  E-value=5.2e-13  Score=101.93  Aligned_cols=101  Identities=14%  Similarity=0.251  Sum_probs=81.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ ..++.++.+|+.+. +...+.||.|++...
T Consensus        41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~  120 (198)
T PRK00377         41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG  120 (198)
T ss_pred             cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence            468999999999999998775 33 389999999999999999988877 46789999998753 222367999997432


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                  .....+++.+.++|+|||++++..
T Consensus       121 ~------------------~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        121 S------------------EKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             c------------------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            1                  345789999999999999998644

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.48  E-value=5e-13  Score=101.83  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++...+ .+|+++|+++++++.+++++...+..+++++.+|+.. ++.....+|.++...   
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~---  117 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG---  117 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence            46899999999999999986643 3999999999999999999988777789999999864 221112346554311   


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      ......+++++.+.|+|||++++.....
T Consensus       118 ----------------~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        118 ----------------GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             ----------------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence                            1235789999999999999999887653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.4e-12  Score=103.12  Aligned_cols=119  Identities=23%  Similarity=0.429  Sum_probs=90.5

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      +|||+|||+|.++..++...+. +|+++|+|+.+++.|++|...+++.++.+++.|++. +.. ++||+|++|       
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsN-------  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSN-------  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeC-------
Confidence            5999999999999999999876 999999999999999999999887667777778765 232 489999986       


Q ss_pred             ecCCCCCCCCC---------------------ccHHHHHHHHHHHhhcccCCcEEEEEec-CCcccccccccCCC
Q 028957           82 VNSGDPWNPQP---------------------ETVTKVMAMLEGVHRVLKPDGLFISVSF-GQPHFRRPFFNAPQ  134 (201)
Q Consensus        82 ~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~~~~  134 (201)
                          +||++..                     .+.+...+++.++.+.|+|||.+++..- +.......++....
T Consensus       184 ----PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~  254 (280)
T COG2890         184 ----PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG  254 (280)
T ss_pred             ----CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence                4455432                     2334578899999999999999887644 33332334444444

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.47  E-value=5.8e-13  Score=104.04  Aligned_cols=104  Identities=25%  Similarity=0.374  Sum_probs=85.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. .+.+...|+...+ ...++||+|++..++++
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            46899999999999999988766 899999999999999988766554 5778888877653 33578999999877765


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .               .+...+++.+.+.|+|||.+++..+.
T Consensus       127 ~---------------~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        127 V---------------PDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             c---------------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            5               45578999999999999999887654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.47  E-value=4.4e-13  Score=104.22  Aligned_cols=119  Identities=21%  Similarity=0.298  Sum_probs=87.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      .+|||+|||+|.++..++++.. .+++++|+++++.+.|++++..++ ..++++++.|+....  ....+||+|+||-.+
T Consensus        46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy  125 (248)
T COG4123          46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY  125 (248)
T ss_pred             CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence            6899999999999999999844 499999999999999999998876 467999999998753  344579999997544


Q ss_pred             ceeeec-CCCCCCCCCccHH--HHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVN-SGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~-~~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...-.. ..+|.-...++..  ..+.+++...++||+||++.++-.
T Consensus       126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence            322000 0000000000000  167889999999999999987753

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.46  E-value=1.1e-12  Score=103.30  Aligned_cols=117  Identities=20%  Similarity=0.322  Sum_probs=86.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..++...+. +++++|+++.+++.++++....+.+++.++++|+.+ .++.++||+|+++..+...
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~  167 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPE  167 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCch
Confidence            48999999999999999987544 999999999999999999988777789999999876 3456789999986543211


Q ss_pred             e--ecCC------CC---CCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 F--VNSG------DP---WNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~--~~~~------~~---~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      -  ....      .|   +............+++++.++|+|||.+++..
T Consensus       168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            0  0000      00   00001112334688999999999999988754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2e-12  Score=102.65  Aligned_cols=108  Identities=25%  Similarity=0.387  Sum_probs=87.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||.|.++..+++..+. +++.+|.+..+++.+++++..++..+..+...|... +..+ +||+|+||-.||.-
T Consensus       160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~G  237 (300)
T COG2813         160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHAG  237 (300)
T ss_pred             CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccCC
Confidence            48999999999999999999776 999999999999999999998887666667777665 3333 99999999888853


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      -          .-...-..+++....+.|++||.|.++...
T Consensus       238 ~----------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~  268 (300)
T COG2813         238 K----------AVVHSLAQEIIAAAARHLKPGGELWIVANR  268 (300)
T ss_pred             c----------chhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence            0          001112348999999999999999988763

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=1.8e-12  Score=97.77  Aligned_cols=119  Identities=24%  Similarity=0.347  Sum_probs=84.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..++..+. +++++|+++++++.+++++...+..+  +.++..|+.+ ++..++||+|+++..+.
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL  101 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence            46899999999999999998854 99999999999999999987766544  8888898766 33445899999865432


Q ss_pred             eeeecCC-C-----CCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSG-D-----PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~-~-----~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..-.+.. .     .+.-...+...+.++++++.++|+|||.+++...+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            1000000 0     00000012334678999999999999998876543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.45  E-value=1.2e-12  Score=101.98  Aligned_cols=96  Identities=22%  Similarity=0.244  Sum_probs=77.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. .|+++|+++.+++.++++....+. .++.+..+|+.   ...++||+|++..++++
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhc
Confidence            35899999999999999998877 799999999999999998876654 47889988843   33578999999888866


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  113 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG  113 (201)
                      +             ..+....+++++.+.+++++
T Consensus       140 ~-------------~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        140 Y-------------PQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             C-------------CHHHHHHHHHHHHhhcCCeE
Confidence            4             23567788888888765443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.45  E-value=2e-12  Score=103.98  Aligned_cols=119  Identities=14%  Similarity=0.247  Sum_probs=86.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+.. ++.++++|+.+ +++..+||+|+++-..-.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            58999999999999999987654 9999999999999999998877764 49999999876 334448999998632210


Q ss_pred             e---------e-ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 L---------F-VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~---------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .         . ..+...+.....+...+.++++.+.+.|+|||.+++....
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            0         0 0000000111223446789999999999999998876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.45  E-value=2.5e-12  Score=86.42  Aligned_cols=102  Identities=32%  Similarity=0.527  Sum_probs=82.5

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccceee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~   81 (201)
                      +|+|+|||+|..+..++.....+++++|+++..+..+++........+++++..|..+... ..+++|+|+++.+++.. 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            5899999999999999884344999999999999988854444445678999999887543 45789999998777541 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                   ......+++.+.+.|+|+|.+++.
T Consensus        80 -------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                         267789999999999999998865

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=7.1e-13  Score=100.26  Aligned_cols=98  Identities=22%  Similarity=0.175  Sum_probs=83.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |.+|||+|||+|+.+..+++... +|+.+|..++..+.|++++...++.|+.++++|...--.+..+||.|+.......+
T Consensus        73 g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~v  151 (209)
T COG2518          73 GDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV  151 (209)
T ss_pred             CCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCC
Confidence            57999999999999999999866 99999999999999999999999989999999988744455899999987665433


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                           -+.+.+.|++||++++-.-
T Consensus       152 ---------------------P~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         152 ---------------------PEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             ---------------------CHHHHHhcccCCEEEEEEc
Confidence                                 2346788999999998654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=1.6e-12  Score=110.66  Aligned_cols=121  Identities=20%  Similarity=0.253  Sum_probs=89.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc--
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT--   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~--   76 (201)
                      |.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++++...++.++.++++|+.... +.++||+|++...  
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs  329 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT  329 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence            4689999999999998887752  2389999999999999999999888778999999998754 4568999995311  


Q ss_pred             -cceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 -MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 -l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                       ...+.-+++.+|...++...    ...+++.++.++|+|||++++.+++.
T Consensus       330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             11111122233433222222    24578999999999999999988764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.44  E-value=2.7e-12  Score=106.78  Aligned_cols=117  Identities=14%  Similarity=0.186  Sum_probs=82.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..++...+. +++++|+|+.+++.++++....+. ++.++++|+.+... ..++||+|+++-....
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCCCCC
Confidence            57999999999999998876443 999999999999999999887764 79999999865432 2357999998643210


Q ss_pred             ee----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .-          +++...+.....+.+..+++++.+.+.|+|||.+++..
T Consensus       332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            00          00000011111233346788888899999999987643

>TIGR03438 probable methyltransferase

Probab=99.42  E-value=2.2e-12  Score=104.50  Aligned_cols=106  Identities=24%  Similarity=0.232  Sum_probs=78.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCC-CCCCCC----ceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLD-LPFSND----CFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~-~~~~~~----~~D~v~   72 (201)
                      +.+|||+|||+|..+..+++...  .+|+++|+|++|++.+.+++.... .-++.++++|+.+ .+....    ...+++
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~  143 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF  143 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence            36899999999999999988853  389999999999999998876532 1246778999876 333322    222333


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +...++.+             ..++..+++++++++|+|||.+++..
T Consensus       144 ~gs~~~~~-------------~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       144 PGSTIGNF-------------TPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             ecccccCC-------------CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            33445443             34678899999999999999988643

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=2.4e-12  Score=109.30  Aligned_cols=122  Identities=23%  Similarity=0.303  Sum_probs=90.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      |.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...++.++.++++|+...+    ...++||.|++.
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D  332 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD  332 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence            5789999999999999998763 2 389999999999999999999988878999999998764    335689999963


Q ss_pred             cc---cceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 AT---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ..   ...+..+.+..|...+....    ...++++++.++|||||++++.+++-
T Consensus       333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            21   11121122233332221111    14688999999999999999877653

>PRK04266 fibrillarin; Provisional

Probab=99.42  E-value=3.9e-12  Score=98.83  Aligned_cols=98  Identities=14%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~   75 (201)
                      |.+|||+|||+|.++..+++... ..|+++|+++.|++.+.++....  +++.++.+|+...    ++. .+||+|++..
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~  149 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVDVIYQDV  149 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence            46899999999999999988742 38999999999999887765543  5789999998642    122 4588888421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                               .+||        ....+++++.++|||||.+++.
T Consensus       150 ---------~~p~--------~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        150 ---------AQPN--------QAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             ---------CChh--------HHHHHHHHHHHhcCCCcEEEEE
Confidence                     1222        2356789999999999999983

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.41  E-value=3e-12  Score=101.92  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=87.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM-   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l-   77 (201)
                      |.+|||+|||+|..+..++....  ..|+++|+++.+++.+++++...+..++.++..|+..++...+.||.|++.... 
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS  151 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence            46899999999999999887632  289999999999999999999888778999999987765444679999963221 


Q ss_pred             --ceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 --EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                        ..+-.+....|...++..    ....++++++.++|||||+++..+++.
T Consensus       152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence              111111111111111111    124569999999999999999887764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.41  E-value=3.7e-12  Score=98.46  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHh------------hcCCCceEEEEcccCCCCCC---C
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL------------LKGYKEVKVLEADMLDLPFS---N   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~------------~~~~~~i~~~~~d~~~~~~~---~   65 (201)
                      +.+||+.|||.|..+..++..|. +|+|+|+|+..++.+.+...            .....++++.++|+++++..   .
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~  122 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL  122 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence            36999999999999999999999 89999999999998865311            01123789999999987532   3


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +.||.|+-..+|+++             +.+...+..+.+.++|+|||.++++++.
T Consensus       123 ~~fD~VyDra~~~Al-------------pp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        123 PVFDIWYDRGAYIAL-------------PNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             CCcCeeeeehhHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            689999998889887             4577889999999999999998887764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=5.5e-12  Score=106.86  Aligned_cols=120  Identities=19%  Similarity=0.327  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++...+. ++.++++|+...+  ++.++||.|++....
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc  323 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLDAPC  323 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence            57899999999999999998764 3999999999999999999988776 4789999988653  335689999964321


Q ss_pred             c---eeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 E---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .   .+..+.+..|...+...    ....++++.+.++|+|||++++.+++
T Consensus       324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            1   11112222333222211    22468899999999999999988764

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.40  E-value=5.9e-12  Score=100.63  Aligned_cols=118  Identities=18%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+. +++++|+++.+++.++++.......++.++.+|+... .+.++||+|+++..+..
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~  187 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYIP  187 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcCC
Confidence            358999999999999999988644 9999999999999999998733345789999998652 33578999998643211


Q ss_pred             ee-----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 LF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .-           ..+...+...........++++++.++|+|||.+++..
T Consensus       188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            00           00000000011233456889999999999999988754

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.40  E-value=3.1e-12  Score=106.98  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCC--C--CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP--F--SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~--~--~~~~~D~v~~~   74 (201)
                      |++|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++++  +++++++|+.+..  +  ..++||+|+++
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD  300 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence            5789999999999998877666569999999999999999999988863  7899999997641  1  24589999973


Q ss_pred             cccceeeecCCCCCCCCCc-----cHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 ATMEVLFVNSGDPWNPQPE-----TVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                 +|......     .......++....++|+|||.++..+++.
T Consensus       301 -----------PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        301 -----------PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             -----------CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                       34332211     11235566777889999999999877654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.40  E-value=4.2e-12  Score=103.10  Aligned_cols=98  Identities=21%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++.....     ..++.+...|+..+   .++||+|+|..
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~  220 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD  220 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence            35899999999999999999876 89999999999999999876541     23578888887654   47899999988


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +++++             ..+....+++.+.+. .++|.++
T Consensus       221 vL~H~-------------p~~~~~~ll~~l~~l-~~g~liI  247 (315)
T PLN02585        221 VLIHY-------------PQDKADGMIAHLASL-AEKRLII  247 (315)
T ss_pred             EEEec-------------CHHHHHHHHHHHHhh-cCCEEEE
Confidence            87665             223455677777754 4555533

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.40  E-value=1e-12  Score=100.73  Aligned_cols=99  Identities=22%  Similarity=0.236  Sum_probs=77.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|||+|||+|+.+..++.. +.. .|+++|.++...+.|++++...+..++.++++|.........+||.|++.....
T Consensus        73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~  152 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP  152 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS
T ss_pred             CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc
Confidence            579999999999999999887 443 799999999999999999999888899999999876433456899999876653


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                     +-..+.+.|++||++++..-
T Consensus       153 ~---------------------ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  153 E---------------------IPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             S-----------------------HHHHHTEEEEEEEEEEES
T ss_pred             h---------------------HHHHHHHhcCCCcEEEEEEc
Confidence            2                     22446788999999987543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.39  E-value=4.1e-12  Score=113.51  Aligned_cols=111  Identities=19%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      |++|||+|||+|.++..++..|..+|+++|+|+.+++.+++++..++..  +++++++|+.+.. ...++||+|+++   
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD---  615 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID---  615 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC---
Confidence            5789999999999999999987768999999999999999999988764  7999999987531 114689999974   


Q ss_pred             ceeeecCCCCCCCCC-------ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQP-------ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                              +|.+...       ....+...++..+.++|+|||.+++.+...
T Consensus       616 --------PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        616 --------PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             --------CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence                    3332211       123456788999999999999988766543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=3.4e-12  Score=108.05  Aligned_cols=122  Identities=12%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++++...+.+++.++++|+..++ ...++||.|++....
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC  317 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC  317 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence            5689999999999999988763  2399999999999999999999888878899999988764 335689999963221


Q ss_pred             ---ceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 ---EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                         ..+-.+.+..|...++..    ....+++.++.+.|+|||.+++.+++.
T Consensus       318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence               111000001111111111    124678999999999999999888764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.39  E-value=1.9e-11  Score=99.46  Aligned_cols=98  Identities=17%  Similarity=0.094  Sum_probs=78.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++...  ..|+++|+++++++.+++++...+.+++.++++|+.......++||+|++....+
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~  160 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD  160 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence            46899999999999999988643  2799999999999999999988887789999999876544446799999754432


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                           .....+.+.|+|||++++..
T Consensus       161 ---------------------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        161 ---------------------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ---------------------HhHHHHHHhcCCCCEEEEEe
Confidence                                 22344678899999988754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.38  E-value=7.6e-12  Score=106.02  Aligned_cols=121  Identities=15%  Similarity=0.265  Sum_probs=86.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEE--EEcccCCCCC--CCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDLPF--SNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~~~--~~~~~D~v~~~~   75 (201)
                      |.+|||+|||+|..+..++.... .+++++|+++.+++.++++++..+.. +.+  ..+|....+.  +.++||.|++..
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~VllDa  317 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILLDA  317 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEEcC
Confidence            57899999999999999988643 39999999999999999999888764 444  6666654432  456899999532


Q ss_pred             c---cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 T---MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~---l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .   +..+-.++...|...++...+    ..+++.++.++|||||++++.+++-
T Consensus       318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            1   111111223334333322222    4789999999999999999987764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.37  E-value=3.5e-12  Score=96.59  Aligned_cols=107  Identities=24%  Similarity=0.367  Sum_probs=74.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      |.+|||+|||+|.++..++....  .+++++|+++.+           ..+++.++++|+.+..        .+.++||+
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~  101 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV  101 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence            57899999999999998887642  279999999854           1246788888987532        34568999


Q ss_pred             EEeccccceeeecCCCCCC-CCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           71 VIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |++....+..    + .|. ..+........+++.+.++|+|||++++..+...
T Consensus       102 V~~~~~~~~~----g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~  150 (188)
T TIGR00438       102 VMSDAAPNIS----G-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE  150 (188)
T ss_pred             EEcCCCCCCC----C-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence            9986543211    0 011 1111223457899999999999999998665443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.37  E-value=1.4e-11  Score=97.31  Aligned_cols=106  Identities=22%  Similarity=0.334  Sum_probs=79.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C-CCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-FSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~~D~v~~~~~l~   78 (201)
                      .+|||+|||+|.++..++..... +++++|+++.+++.+++++..++   ++++++|+.+. + ...++||+|+++-   
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP---  161 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANA---  161 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECC---
Confidence            47999999999999999876433 89999999999999999987654   47888998652 1 1135799999853   


Q ss_pred             eeeecCCCCCCCC----------------------CccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQ----------------------PETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                              ||.+.                      ....+.+..+++.+.+.|+|||.+++....
T Consensus       162 --------Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       162 --------PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             --------CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                    33321                      112233568888999999999999976543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=1e-11  Score=105.84  Aligned_cols=120  Identities=16%  Similarity=0.231  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...++.++.++++|+....  ++ ++||+|++...
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P  329 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP  329 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence            4689999999999999998863 2 399999999999999999999888778999999997753  33 68999997532


Q ss_pred             c---ceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 M---EVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l---~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .   ..+-.++...|...+.....    ...+++++.++|+|||++++.+++
T Consensus       330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            1   11111112223222211111    356899999999999999987655

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.36  E-value=1e-11  Score=107.10  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=83.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..++...+. +|+++|+|+.+++.++++....+. +++.++++|+.. ..+.++||+|+++-.+-.
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCC
Confidence            47999999999999988876433 999999999999999999887764 468999999765 233468999998643211


Q ss_pred             ee-----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           80 LF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        80 ~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      .-           ..+...+.-...+...+.++++.+.+.|+|||.+++.
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            00           0000001112223345678899999999999998864

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.36  E-value=5.2e-11  Score=90.70  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-CCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+..++.++++|+... +....+||+|+++     
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D-----  128 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD-----  128 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC-----
Confidence            4689999999999999776666669999999999999999999888877899999998752 2223469999974     


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~~  120 (201)
                            +|+..     .....+++.+.+  .|+|+|.+++...
T Consensus       129 ------PPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        129 ------PPFRK-----GLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ------CCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence                  33321     223445555544  4789888776543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.35  E-value=2.9e-11  Score=97.75  Aligned_cols=108  Identities=22%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |..|||--||||++..++...|. +++|+|++..|++.++.|+...++....+... |+..++++.+++|.|++      
T Consensus       198 G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat------  270 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT------  270 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe------
Confidence            57899999999999999998988 99999999999999999999988767766666 99999998888999997      


Q ss_pred             eeecCCCCCCCCC----cc-HHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQP----ET-VTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                           ++|+.-..    .. .+-+.++++.+.++|++||++++..+
T Consensus       271 -----DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         271 -----DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -----cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                 34554211    11 23478999999999999999988765

>PRK00811 spermidine synthase; Provisional

Probab=99.35  E-value=1.5e-11  Score=98.86  Aligned_cols=107  Identities=23%  Similarity=0.360  Sum_probs=81.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhc-----CCCceEEEEcccCCC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v~~   73 (201)
                      +++||++|||+|..+.++++. +..+|+++|+++.+++.+++.+...     .-++++++.+|+... ....++||+|++
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            478999999999999999887 4459999999999999999987642     135789999998763 234578999997


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..         .+|+.+..  .--...+++.+.+.|+|||.+++.
T Consensus       157 D~---------~dp~~~~~--~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        157 DS---------TDPVGPAE--GLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CC---------CCCCCchh--hhhHHHHHHHHHHhcCCCcEEEEe
Confidence            42         24442211  112468899999999999998865

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.34  E-value=8.3e-12  Score=98.07  Aligned_cols=97  Identities=20%  Similarity=0.333  Sum_probs=82.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|+|||+|+|.++..+++..+. +++..|+ +++++.+++      .++++++.+|++ .+++.  +|+++...++|.+
T Consensus       102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~  171 (241)
T PF00891_consen  102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW  171 (241)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred             cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence            57999999999999999999777 9999998 888888877      359999999998 46654  9999999999986


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCC--cEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~l~~~~~~  121 (201)
                                   +.++..++|+++++.|+||  |++++.+..
T Consensus       172 -------------~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  172 -------------SDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             --------------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             -------------chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence                         6688999999999999999  999988764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.34  E-value=4.9e-12  Score=96.22  Aligned_cols=89  Identities=27%  Similarity=0.397  Sum_probs=70.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-C-CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..+++.....++++|+++++++.++++       +++++++|+.. + ++++++||+|+++.++|
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~   86 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ   86 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence            468999999999999888766433789999999999888642       56788888865 3 35678899999999988


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  111 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  111 (201)
                      ++               .+..++++++.+.+++
T Consensus        87 ~~---------------~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        87 AT---------------RNPEEILDEMLRVGRH  104 (194)
T ss_pred             cC---------------cCHHHHHHHHHHhCCe
Confidence            76               4567788888876553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=7.8e-12  Score=96.70  Aligned_cols=105  Identities=26%  Similarity=0.338  Sum_probs=86.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|||.|.|+|.++..++.. ++. +|+.+|..++..+.|++|+...++.+ +.+..+|+.+.... ..||+|+     
T Consensus        95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~vDav~-----  168 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDVDAVF-----  168 (256)
T ss_pred             CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-cccCEEE-----
Confidence            689999999999999999975 553 99999999999999999999887555 88888998875443 3677776     


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR  126 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  126 (201)
                          .|.++||           ++++.+..+|+|||.+++..++.....
T Consensus       169 ----LDmp~PW-----------~~le~~~~~Lkpgg~~~~y~P~veQv~  202 (256)
T COG2519         169 ----LDLPDPW-----------NVLEHVSDALKPGGVVVVYSPTVEQVE  202 (256)
T ss_pred             ----EcCCChH-----------HHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence                3556777           689999999999999988776654433

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.32  E-value=1.3e-11  Score=93.81  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=82.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+.||+|||-|..|..++...+.+|..+|..+..++.|++.+......-.++.+..+.+...+.++||+|++.+++.++ 
T Consensus        57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL-  135 (218)
T PF05891_consen   57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL-  135 (218)
T ss_dssp             SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred             ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC-
Confidence            4789999999999998877767799999999999999998765522223577888888766556799999999999988 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                  ..++..++|+++...|+|+|.+++-+..
T Consensus       136 ------------TD~dlv~fL~RCk~~L~~~G~IvvKEN~  163 (218)
T PF05891_consen  136 ------------TDEDLVAFLKRCKQALKPNGVIVVKENV  163 (218)
T ss_dssp             -------------HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------------CHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence                        6789999999999999999999986643

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.32  E-value=2.1e-11  Score=92.15  Aligned_cols=110  Identities=24%  Similarity=0.352  Sum_probs=84.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .-|||||||+|.-+..+...|. .++|+|+|+.|++.|.+..-     .-.++.+|+-. +|++.++||-||+...+.++
T Consensus        52 ~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQWL  125 (270)
T KOG1541|consen   52 GLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQWL  125 (270)
T ss_pred             cEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence            4699999999999988888885 99999999999999987421     12567777764 78999999999998888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      + |.+.   ....+...+..++..++.+|++|++.++..+.
T Consensus       126 c-nA~~---s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  126 C-NADK---SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP  162 (270)
T ss_pred             c-ccCc---cccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence            3 2221   11223455778899999999999998876543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.31  E-value=1.2e-11  Score=106.57  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=91.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~   78 (201)
                      ..+||+|||.|.++..+|...+. .++|+|+....+..+.++....++.|+.+++.|+..+.  ++++++|.        
T Consensus       349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~--------  420 (506)
T PRK01544        349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG--------  420 (506)
T ss_pred             ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE--------
Confidence            46899999999999999999777 99999999999988888887778889999888875432  44455554        


Q ss_pred             eeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                       ++.+|++||.++.+++..+  ..+++.+.+.|+|||.+.+.+-..
T Consensus       421 -i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~  465 (506)
T PRK01544        421 -IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE  465 (506)
T ss_pred             -EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence             4556789999988777664  689999999999999999876543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.31  E-value=2.8e-11  Score=90.12  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=63.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..+++.+. +++++|+++.+++.+++++..  .++++++.+|+.+++++..++|.|+++..++
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            36899999999999999998854 999999999999999988754  3589999999998877666799999865543

>PRK04457 spermidine synthase; Provisional

Probab=99.29  E-value=2.3e-11  Score=96.61  Aligned_cols=111  Identities=16%  Similarity=0.291  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-CCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-PFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l   77 (201)
                      +++|||+|||+|.++..++...+. +++++|+++++++.+++++.... .++++++.+|+... ....++||+|++.. +
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~  145 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F  145 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence            468999999999999999887554 99999999999999999876543 36899999998652 22236899999742 1


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +..    ..|     . .-....+++++.+.|+|||.+++..+..
T Consensus       146 ~~~----~~~-----~-~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        146 DGE----GII-----D-ALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             CCC----CCc-----c-ccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            110    001     0 0123689999999999999999865443

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=5.2e-11  Score=94.94  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D~v~~~~   75 (201)
                      +++|||+|||+|.++..++... .. .|+++|+++.+.+.+.+.....  +++.++..|+...   .....++|+|++..
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence            4689999999999999999873 33 8999999988776665544332  4889999998642   12235789998754


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      .         .|        .....++.++.++|||||.+++.
T Consensus       211 a---------~p--------dq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        211 A---------QP--------DQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             C---------Cc--------chHHHHHHHHHHhccCCCEEEEE
Confidence            2         11        24456777899999999999984

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.28  E-value=5.3e-12  Score=96.56  Aligned_cols=99  Identities=17%  Similarity=0.303  Sum_probs=72.1

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .++|+|||+|..++.++.. +++|+|+|+++.|++.+++.....-. ........++..+.-.+++.|+|++..++|++ 
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-  113 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-  113 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence            6899999999777777766 55999999999999988876432211 01122223333333347899999999999875 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                     +..++.++++++||+.|-++.+
T Consensus       114 ---------------dle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  114 ---------------DLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ---------------chHHHHHHHHHHcCCCCCEEEE
Confidence                           5689999999999888854444

>PHA03411 putative methyltransferase; Provisional

Probab=99.27  E-value=7.4e-11  Score=93.18  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=81.0

Q ss_pred             CcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..++.+. ..+|+++|+++.+++.+++++     +++.++++|+..... ..+||+|+++..++..
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l  139 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFDVVISNPPFGKI  139 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence            589999999999998887764 239999999999999998763     368899999987543 4689999998776553


Q ss_pred             eecCCCCCCC---CCccHHH--HHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           81 FVNSGDPWNP---QPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        81 ~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      -......|..   .....+.  ..+++.....+|+|+|.++++-.+.|.
T Consensus       140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~  188 (279)
T PHA03411        140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY  188 (279)
T ss_pred             CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence            1000000000   0000000  357788888999999988776544443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.26  E-value=2.5e-11  Score=93.76  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=82.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-c-----------CCCceEEEEcccCCCCCCC-Cce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-K-----------GYKEVKVLEADMLDLPFSN-DCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-~-----------~~~~i~~~~~d~~~~~~~~-~~~   68 (201)
                      .+||..|||.|.....++..|. +|+|+|+++.+++.+.+.... .           ...+|++.++|.+.++... ++|
T Consensus        39 ~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f  117 (218)
T PF05724_consen   39 GRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF  117 (218)
T ss_dssp             EEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred             CeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence            5899999999999999999998 999999999999998443211 0           1236789999999875332 589


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+|+-..+|+++             +.+...+..+.+.++|+|||.+++++.
T Consensus       118 D~iyDr~~l~Al-------------pp~~R~~Ya~~l~~ll~p~g~~lLi~l  156 (218)
T PF05724_consen  118 DLIYDRTFLCAL-------------PPEMRERYAQQLASLLKPGGRGLLITL  156 (218)
T ss_dssp             EEEEECSSTTTS--------------GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             eEEEEecccccC-------------CHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            999999889887             456788999999999999999555443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.25  E-value=5.8e-11  Score=98.44  Aligned_cols=113  Identities=21%  Similarity=0.248  Sum_probs=91.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~----~~~~~~~D~v~~~   74 (201)
                      |++||++.|-||.++..++..|..+|++||+|...++.+++|+..+++  .++.++++|++..    .-...+||+|+..
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            689999999999999999999988999999999999999999999885  4578999999863    1334589999962


Q ss_pred             cccceeeecCCCCCCCC-----CccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           75 ATMEVLFVNSGDPWNPQ-----PETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                 +|=+-+     .....+...++..+.++|+|||.+++++++...
T Consensus       298 -----------PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~  341 (393)
T COG1092         298 -----------PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF  341 (393)
T ss_pred             -----------CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence                       222210     122456789999999999999999998876543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.25  E-value=1.5e-10  Score=87.10  Aligned_cols=106  Identities=20%  Similarity=0.331  Sum_probs=78.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C---CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P---FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~---~~~~~~D~v~~~~   75 (201)
                      |.++||+.||+|.++.+.+.+|..+|+.+|.++..++.+++|+...+.. ++.++..|+... .   ....+||+|++  
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl--  120 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL--  120 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred             CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE--
Confidence            5789999999999999999999999999999999999999999888754 488999997542 1   24678999996  


Q ss_pred             ccceeeecCCCCCCCCCccHHH-HHHHHHHHh--hcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTK-VMAMLEGVH--RVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~--~~L~~gG~l~~~~~~~  122 (201)
                               ++|+.     ... ..++++.+.  ..|+++|.+++.....
T Consensus       121 ---------DPPY~-----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 ---------DPPYA-----KGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             -----------STT-----SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ---------CCCcc-----cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence                     34553     233 477777776  7899999888765443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.25  E-value=1.1e-10  Score=91.23  Aligned_cols=100  Identities=19%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v   71 (201)
                      +++|||+|||+|..+..++... . .+++++|.++++++.++++++..++ ++++++.+|+.+. +     .+.++||+|
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            4789999999999888887652 2 3999999999999999999998875 4699999998763 1     124689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ++..                  .+..+...++.+.+.|+|||.+++-
T Consensus       149 fiDa------------------~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        149 FVDA------------------DKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             EECC------------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8531                  2355678899999999999997753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.24  E-value=7.5e-10  Score=83.86  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=76.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C-CC-CceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-SN-DCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~-~~-~~~D~v~~~~   75 (201)
                      |++|||++||+|.++.+++.+|..+|+++|.++.+++.+++++...+.. +++++++|+... . . .. ..+|+|+.  
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~--  127 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL--  127 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE--
Confidence            5789999999999999999998879999999999999999999888754 689999999542 1 1 12 24788775  


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~  120 (201)
                               ++|+..     .....+++.+.  .+|+++|.+++...
T Consensus       128 ---------DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       128 ---------DPPFFN-----GALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             ---------CcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence                     334322     22344444443  46888887765543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=6.6e-11  Score=87.68  Aligned_cols=73  Identities=26%  Similarity=0.345  Sum_probs=63.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|+|+|||||.++...+..|+..|+|+|+++++++.+++|.... ..++.++..|+.+..   ..+|.|+.|-.|
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~---~~~dtvimNPPF  118 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR---GKFDTVIMNPPF  118 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC---CccceEEECCCC
Confidence            4689999999999999999999889999999999999999998873 458999999998864   678888876433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.23  E-value=7.5e-11  Score=90.35  Aligned_cols=109  Identities=16%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC-----CC-------------------------
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YK-------------------------   49 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~-----~~-------------------------   49 (201)
                      ++.+||+||.+|.++..+++. ++..++|+|+++..++.|+++++...     +.                         
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t  138 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT  138 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence            467999999999999999987 55599999999999999999865331     00                         


Q ss_pred             -----ceEEEEcccC-----CCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           50 -----EVKVLEADML-----DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        50 -----~i~~~~~d~~-----~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                           ++.+...+..     -+.+....||+|+|-.+--++..|         .+.+.+..+++++.++|.|||++++.
T Consensus       139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLN---------wgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLN---------WGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecc---------cccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                 1111111100     012345689999986666566555         35588999999999999999998853

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=97.21  Aligned_cols=156  Identities=38%  Similarity=0.542  Sum_probs=131.2

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV   82 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~   82 (201)
                      +++.+|||...++..+...|+..++.+|+|+..++.+..+.. ...+.+.+...|+..+.+++.+||+|+..+.+|+++.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            689999999999999999999999999999999999887764 3345789999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC--CcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCC
Q 028957           83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG--QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR  160 (201)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (201)
                      +++.+|++     ......+.++.+++++||+++.+++.  .|..+...+......|...............+.+.+|..
T Consensus       130 de~a~~~~-----~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~  204 (482)
T KOG2352|consen  130 DEDALLNT-----AHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQ  204 (482)
T ss_pred             Cchhhhhh-----HHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCeeeeecCccchhhhhhhccCcceEEEEeccCcc
Confidence            99999854     56778999999999999999988884  456555555555566777777777777888888888776


Q ss_pred             Cchh
Q 028957          161 SSAD  164 (201)
Q Consensus       161 ~~~~  164 (201)
                      ....
T Consensus       205 ~~~~  208 (482)
T KOG2352|consen  205 YSTP  208 (482)
T ss_pred             ccch
Confidence            6553

>PLN02672 methionine S-methyltransferase

Probab=99.21  E-value=2.1e-10  Score=105.24  Aligned_cols=142  Identities=22%  Similarity=0.270  Sum_probs=93.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC----------------CCceEEEEcccCCCCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG----------------YKEVKVLEADMLDLPFS   64 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~----------------~~~i~~~~~d~~~~~~~   64 (201)
                      .+|||+|||+|.++..++...+. +|+++|+|+++++.+++|...++                ..+++++++|+.+....
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~  199 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD  199 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence            57999999999999999987653 99999999999999999987643                23689999998763211


Q ss_pred             -CCceeEEEeccccc------ee---eecC-----------CCCCCC---CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           65 -NDCFDVVIEKATME------VL---FVNS-----------GDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 -~~~~D~v~~~~~l~------~~---~~~~-----------~~~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                       ..+||+|++|-..=      .+   ..+.           -.+..-   ...+..-+++++.+..+.|+|||.+++..-
T Consensus       200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG  279 (1082)
T PLN02672        200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG  279 (1082)
T ss_pred             cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence             13699999863310      00   0000           000100   123444568899999999999999887654


Q ss_pred             CCccc-cc-ccccCCCCceEEEEEE
Q 028957          121 GQPHF-RR-PFFNAPQFTWSVEWIT  143 (201)
Q Consensus       121 ~~~~~-~~-~~~~~~~~~~~~~~~~  143 (201)
                      ..+.. .. .++...++.-...|..
T Consensus       280 ~~q~~~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        280 GRPGQAVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             ccHHHHHHHHHHHHCCCCeeEEeee
Confidence            43322 22 2444444444444443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.21  E-value=5.9e-11  Score=95.59  Aligned_cols=103  Identities=18%  Similarity=0.319  Sum_probs=84.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|-++...|++|..+|+++|.+. +.+.+.+....++..+ ++++.+.+.++.+|..+.|+|++-+.=++
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~  139 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF  139 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence            578999999999999999999988999999865 4588888888888655 78999999987777789999999776666


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      ++.+            .-+..++-.--+.|+|||.++
T Consensus       140 Ll~E------------sMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  140 LLYE------------SMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHh------------hhhhhhhhhhhhccCCCceEc
Confidence            5433            334556666668899999977

>PLN02366 spermidine synthase

Probab=99.20  E-value=2.9e-10  Score=92.13  Aligned_cols=107  Identities=17%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCCC-C-CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL-P-FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~-~-~~~~~~D~v~~   73 (201)
                      +++||++|||.|..+.++++... .+|+.+|+++.+++.+++.+...    .-++++++.+|+... . .+.++||+|++
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            47899999999999999988743 48999999999999999987642    135899999998642 1 23568999996


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..         .+|+.+  ...--...+++.+.+.|+|||.++..
T Consensus       172 D~---------~dp~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        172 DS---------SDPVGP--AQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             cC---------CCCCCc--hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            32         234322  11122468899999999999998764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.19  E-value=1.7e-10  Score=90.38  Aligned_cols=103  Identities=27%  Similarity=0.412  Sum_probs=79.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCC---CCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFS---NDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~~D~v~~~   74 (201)
                      |++|||.|.|+|.++..+++. ++. +|+..|..++..+.|++++...++. ++.+...|+....+.   ...+|.|+  
T Consensus        41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf--  118 (247)
T PF08704_consen   41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVF--  118 (247)
T ss_dssp             T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEE--
T ss_pred             CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEE--
Confidence            689999999999999999976 544 9999999999999999999998864 799999999754442   24567666  


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc-cCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~  123 (201)
                             .|-++||           .++..+.+.| ++||++.+..++..
T Consensus       119 -------LDlp~Pw-----------~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen  119 -------LDLPDPW-----------EAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             -------EESSSGG-----------GGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             -------EeCCCHH-----------HHHHHHHHHHhcCCceEEEECCCHH
Confidence                   4556777           4778888999 89999888766543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.19  E-value=1.6e-10  Score=86.42  Aligned_cols=106  Identities=22%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCC----CCCCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLP----FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~----~~~~~~D~v~   72 (201)
                      +.+|||||||+|..+..++.. +..+|+.+|.++ .++.++.++..++   ..++.+...|+.+..    ....+||+|+
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il  124 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL  124 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence            578999999999999999888 555999999998 9999999988764   356788888876521    3346899999


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++-++.               ..+....+++.+.++|+++|.+++....+
T Consensus       125 asDv~Y---------------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  125 ASDVLY---------------DEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EES--S----------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             Eecccc---------------hHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            966653               23667889999999999999966655433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.19  E-value=2.1e-10  Score=97.74  Aligned_cols=99  Identities=19%  Similarity=0.320  Sum_probs=75.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..++..+++++++|+.+.    ++..++||+|+++  
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d--  374 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD--  374 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC--
Confidence            46899999999999999998865 9999999999999999999888877899999998652    2334679999863  


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                               +|+       ......++.+.+ ++|++.+++.+
T Consensus       375 ---------PPr-------~g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        375 ---------PPR-------AGAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             ---------cCC-------cChHHHHHHHHh-cCCCeEEEEEe
Confidence                     222       112345555555 57877766553

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.16  E-value=1.4e-10  Score=90.17  Aligned_cols=92  Identities=24%  Similarity=0.372  Sum_probs=72.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .++||||+|.|..+..++.... +|+++|.|+.|....+++       ..+++..+  +..-.+.+||+|.|-++++.. 
T Consensus        96 ~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k-------g~~vl~~~--~w~~~~~~fDvIscLNvLDRc-  164 (265)
T PF05219_consen   96 KSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK-------GFTVLDID--DWQQTDFKFDVISCLNVLDRC-  164 (265)
T ss_pred             CceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC-------CCeEEehh--hhhccCCceEEEeehhhhhcc-
Confidence            5799999999999999987644 899999999997776653       33333222  222234689999999999877 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                    .++..+++.+++.|+|+|++++.
T Consensus       165 --------------~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  165 --------------DRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             --------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence                          56789999999999999998864

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.16  E-value=1.6e-10  Score=92.26  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=82.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC-C--CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL-P--FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~-~--~~~~~~D~v~~~~   75 (201)
                      |++|||+.|-||.++..++..|..+|+++|.|..+++.+++|+..++.  .++++++.|+.+. .  -..++||+|++. 
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD-  202 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD-  202 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred             CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC-
Confidence            589999999999999999888877999999999999999999998874  4789999999762 1  124689999962 


Q ss_pred             ccceeeecCCCCCC-C-CCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           76 TMEVLFVNSGDPWN-P-QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        76 ~l~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                +|=+ + ...-..++.+++..+.++|+|||.+++++++..
T Consensus       203 ----------PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  203 ----------PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             -----------SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             ----------CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence                      1111 1 112234678899999999999999988776543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00417 speE spermidine synthase

Probab=99.16  E-value=2.7e-10  Score=91.04  Aligned_cols=108  Identities=22%  Similarity=0.337  Sum_probs=79.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +++||++|||+|..+..+++.. ..+++++|+++++++.+++.+....    .++++++.+|+... ....++||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            4689999999999999988875 3489999999999999999875432    25688888887642 2224689999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..         +|+.+.  ..--...+++.+.+.|+|||.+++..
T Consensus       153 ~~---------~~~~~~--~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       153 ST---------DPVGPA--ETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             CC---------CCCCcc--cchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            32         122110  00114688999999999999998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.16  E-value=2.2e-10  Score=93.43  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....++++++++++|+..... ..++||+|+++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            46899999999999999999875 999999999999999999988888789999999976432 23579999963

>PHA03412 putative methyltransferase; Provisional

Probab=99.16  E-value=3.7e-10  Score=87.34  Aligned_cols=105  Identities=18%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcC----CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~----~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++..    ..+|+++|+++.+++.++++.     +++.++..|+....+ .++||+|++|-.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP  123 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP  123 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence            3689999999999999888752    228999999999999999774     357899999876554 468999999866


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  114 (201)
                      +...-  ..+ +.-..........+++...+++++|+.
T Consensus       124 Y~~~~--~~d-~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        124 FGKIK--TSD-FKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCcc--ccc-cCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            65320  000 000001123356788898886666554

>PRK01581 speE spermidine synthase; Validated

Probab=99.15  E-value=4.2e-10  Score=92.17  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=79.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHH--Hh---h--cCCCceEEEEcccCCC-CCCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LL---L--KGYKEVKVLEADMLDL-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~--~~---~--~~~~~i~~~~~d~~~~-~~~~~~~D~v   71 (201)
                      +++||++|||+|..+..+++... .+|+++|+++++++.|++.  +.   .  ..-++++++.+|+... ....++||+|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            47899999999999998888743 4999999999999999962  11   1  1136899999999863 3345689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ++..         .+|.... ....-...+++.+++.|+|||.++...
T Consensus       231 IvDl---------~DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        231 IIDF---------PDPATEL-LSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             EEcC---------CCccccc-hhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9642         1222110 111223679999999999999987654

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.13  E-value=4.2e-10  Score=86.08  Aligned_cols=100  Identities=24%  Similarity=0.320  Sum_probs=80.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v   71 (201)
                      +++|||+|+++|+-+..++...+.  +++.+|.+++..+.|++++...+. .+|+++.+|+... +     .+.++||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            478999999999999999987432  999999999999999999988774 5799999998752 1     123589999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +..    +              .+..+...++.+.+.|+|||.+++-
T Consensus       126 FiD----a--------------~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  126 FID----A--------------DKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEE----S--------------TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEc----c--------------cccchhhHHHHHhhhccCCeEEEEc
Confidence            952    2              3466788899999999999998864

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=99.13  E-value=7.6e-10  Score=88.08  Aligned_cols=100  Identities=11%  Similarity=0.108  Sum_probs=81.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C----CCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F----SNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~----~~~~~D~v   71 (201)
                      +++|||+|+++|+.+..++...+ . +++++|.+++..+.|+++++..++. +++++.+|+.+. + +    ..++||+|
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            47899999999999999987532 2 8999999999999999999988864 799999998652 1 1    13579999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +..    .              .+..+...++.+.+.|+|||.+++-
T Consensus       199 FID----a--------------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        199 FVD----A--------------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             EEC----C--------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            852    1              3467889999999999999998853

>PRK03612 spermidine synthase; Provisional

Probab=99.12  E-value=4.2e-10  Score=97.57  Aligned_cols=109  Identities=26%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHH--Hhhc-----CCCceEEEEcccCCC-CCCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LLLK-----GYKEVKVLEADMLDL-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~--~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v   71 (201)
                      +++|||+|||+|..+.++++... .+++++|+++++++.++++  +...     .-++++++.+|+.+. ....++||+|
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI  377 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI  377 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence            46899999999999999988754 5999999999999999983  2211     125789999998763 2234689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +++.         .+|+.+.. ..--...+++.+.+.|+|||.+++..
T Consensus       378 i~D~---------~~~~~~~~-~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        378 IVDL---------PDPSNPAL-GKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEeC---------CCCCCcch-hccchHHHHHHHHHhcCCCeEEEEec
Confidence            9752         23332211 11123578999999999999988754

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.12  E-value=5.1e-10  Score=85.88  Aligned_cols=100  Identities=22%  Similarity=0.298  Sum_probs=82.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEE-cccCCC-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLE-ADMLDL-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~-~d~~~~-~-~~~~~~D~v~~~   74 (201)
                      +++|||+|.+.|+-+..++...+ . +++++|.++++.+.|+++++..++.. +..+. +|+.+. . ...++||+|+. 
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI-  138 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI-  138 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE-
Confidence            47899999999999999998855 3 99999999999999999999988544 77777 576642 2 34689999994 


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                         ++              .+....++++.+.++|+|||.+++-
T Consensus       139 ---Da--------------dK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         139 ---DA--------------DKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             ---eC--------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence               22              3467889999999999999998863

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.11  E-value=2.9e-09  Score=77.31  Aligned_cols=103  Identities=24%  Similarity=0.435  Sum_probs=84.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~   73 (201)
                      |.-|||+|.|||-++..++++|..  .++++|.+++......+.+     +.++++.+|+.++.     .+...||.|+|
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS  123 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVIS  123 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence            457999999999999999999754  9999999999999998775     45678999988754     56678999998


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .-.+-.+             ......++++.+...|.+||.++..+++
T Consensus       124 ~lPll~~-------------P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         124 GLPLLNF-------------PMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             ccccccC-------------cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            6544332             3355678999999999999999988876

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.11  E-value=7.9e-09  Score=77.16  Aligned_cols=107  Identities=23%  Similarity=0.274  Sum_probs=79.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-C-CCC-CceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-P-FSN-DCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~-~~~-~~~D~v~~~~~   76 (201)
                      |.++||+.+|+|.++.+.+.+|...++.+|.+......+++|++..+ ..+..++..|+... . ... ++||+|+.   
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl---  120 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL---  120 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe---
Confidence            57999999999999999999999999999999999999999998877 45688888888743 1 222 24999985   


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHH--HhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEG--VHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~l~~~~~~  121 (201)
                              |+|+..   ..-+....+..  -...|+|+|.+++....
T Consensus       121 --------DPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         121 --------DPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             --------CCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence                    344421   11211233333  45679999998876543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=6.5e-09  Score=76.51  Aligned_cols=137  Identities=20%  Similarity=0.305  Sum_probs=90.4

Q ss_pred             CcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ..++|+|||+|..+..+++. ++. .+.++|+++.+++...+-...++. ++..++.|+.+. +..++.|+++.+-.+--
T Consensus        45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSG-LRNESVDVLVFNPPYVP  122 (209)
T ss_pred             eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhh-hccCCccEEEECCCcCc
Confidence            46899999999999999887 433 899999999999999888777764 688899998763 33488999986422200


Q ss_pred             eeecCCCC---------CCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccc--ccccCCCCceEEEEEE
Q 028957           80 LFVNSGDP---------WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR--PFFNAPQFTWSVEWIT  143 (201)
Q Consensus        80 ~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  143 (201)
                         .++.|         |--...+.+-..+++..+-.+|.|.|.++++........+  .+++..++.-...+..
T Consensus       123 ---t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R  194 (209)
T KOG3191|consen  123 ---TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR  194 (209)
T ss_pred             ---CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence               00000         1101122233677888888999999999988665433322  2233444444444443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.09  E-value=8.6e-10  Score=83.46  Aligned_cols=105  Identities=20%  Similarity=0.273  Sum_probs=85.9

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCCCCC--------CCCceeEEE
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLPF--------SNDCFDVVI   72 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~--------~~~~~D~v~   72 (201)
                      +|||||||||..+..+++..+. ...-.|.++.............+.+|+. -+..|+.+.+.        ...+||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            4999999999999999999776 8888999999888888877777666653 46777765421        245899999


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +.+++|-+             ..+....+++...+.|++||.+++..+
T Consensus       108 ~~N~lHI~-------------p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen  108 CINMLHIS-------------PWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             ehhHHHhc-------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            99999987             337789999999999999999997643

The function of this family is unknown.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.08  E-value=9.8e-10  Score=91.67  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||++||+|.++..++..+. +|+++|+++.+++.++++...+++++++++++|+.+... ..++||+|+++     
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D-----  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN-----  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC-----
Confidence            35799999999999999997764 999999999999999999988887789999999876321 12458998862     


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                            +|.     . .....+++.+.+ ++|++.+++. +++..
T Consensus       308 ------PPr-----~-G~~~~~l~~l~~-~~p~~ivyvs-c~p~T  338 (374)
T TIGR02085       308 ------PPR-----R-GIGKELCDYLSQ-MAPKFILYSS-CNAQT  338 (374)
T ss_pred             ------CCC-----C-CCcHHHHHHHHh-cCCCeEEEEE-eCHHH
Confidence                  332     1 112344555543 6887766654 44333

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02823 spermine synthase

Probab=99.02  E-value=3.2e-09  Score=87.01  Aligned_cols=109  Identities=19%  Similarity=0.307  Sum_probs=79.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +++||.+|+|.|..+.++++.. ..+++++|+++++++.+++.+....    -++++++.+|+... ....++||+|++.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            4689999999999999998864 3489999999999999999875431    36899999998863 3345789999963


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEE
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISV  118 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~  118 (201)
                      .         .+|+...+...--...+++ .+.+.|+|||.+++.
T Consensus       184 ~---------~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        184 L---------ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             C---------CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            1         1233211101111356787 889999999998764

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.02  E-value=4.1e-09  Score=79.15  Aligned_cols=106  Identities=22%  Similarity=0.315  Sum_probs=76.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-e---------EEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCcee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-A---------ITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~---------v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D   69 (201)
                      +..|||-.||+|++.++.+..+.. .         ++|.|+++.+++.+++|+...+. ..+.+.+.|+.++++..+++|
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d  108 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD  108 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence            468999999999999998876443 3         88999999999999999988774 358899999999887778999


Q ss_pred             EEEeccccceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEE
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +|+++           +||...-...    .-+.++++++.+++++ ..+++.
T Consensus       109 ~Ivtn-----------PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~  149 (179)
T PF01170_consen  109 AIVTN-----------PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT  149 (179)
T ss_dssp             EEEEE-------------STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred             EEEEC-----------cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence            99985           4555322222    2356778888899988 444433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=8.1e-09  Score=80.69  Aligned_cols=108  Identities=21%  Similarity=0.300  Sum_probs=79.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCC-----CCCCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLD-----LPFSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~-----~~~~~~~~D~v~~~   74 (201)
                      ..|||+|||+|.++..++..-+. .++++|.++.++..|.+|.....+ .++.++..++..     .+...+++|++++|
T Consensus       150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN  229 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN  229 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence            46999999999999999877444 999999999999999999887763 456666444432     12456889999986


Q ss_pred             cccceeeecCCCCCCCCC----------------------ccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQP----------------------ETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                 +||++..                      ++...+..+..-..|+|+|||.+.+...
T Consensus       230 -----------PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  230 -----------PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             -----------CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence                       3444311                      2223355667778899999999887654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.01  E-value=3.2e-09  Score=90.54  Aligned_cols=120  Identities=17%  Similarity=0.168  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEe----
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE----   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~----   73 (201)
                      |.+|||+|||+|+-+..++....  ..+++.|+++..++.+++++...++.++.+...|...+. .....||.|+.    
T Consensus       114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC  193 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC  193 (470)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence            57899999999999999988632  289999999999999999999999888999999987653 22357999993    


Q ss_pred             ccccceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++. ..+--+.+.-|.-.++..    ....++|.+..++|||||+++..+++
T Consensus       194 SG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        194 SGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             CCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            321 111001000111111111    12478899999999999999988776

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.01  E-value=2e-09  Score=81.73  Aligned_cols=103  Identities=22%  Similarity=0.291  Sum_probs=67.4

Q ss_pred             cEEEecCCCChh----hHHHHh---c-CC-C-eEEEEECCHHHHHHHHHHH-------------------hhcC------
Q 028957            3 SVLELGCGNSRL----SEGLYN---D-GI-T-AITCIDLSAVAVEKMQERL-------------------LLKG------   47 (201)
Q Consensus         3 ~vLDlG~G~G~~----~~~l~~---~-~~-~-~v~~vD~~~~~~~~~~~~~-------------------~~~~------   47 (201)
                      +|+..||++|.-    +..+..   . .. . +++|+|+|+.+++.|++-.                   ...+      
T Consensus        34 rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~  113 (196)
T PF01739_consen   34 RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVK  113 (196)
T ss_dssp             EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-
T ss_pred             EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEC
Confidence            789999999953    322333   1 11 3 9999999999999998731                   0000      


Q ss_pred             ---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           48 ---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        48 ---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                         ..+|.|...|+.+.+...+.||+|+|.+++-++             +.+...++++.+++.|+|||.|++-
T Consensus       114 ~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-------------~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  114 PELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-------------DPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--------------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             hHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-------------CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence               136889999988844456889999999998665             5577899999999999999999964

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.00  E-value=2.8e-09  Score=90.59  Aligned_cols=72  Identities=22%  Similarity=0.352  Sum_probs=61.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~   73 (201)
                      +.+|||+|||+|.++..+++... +|+++|+++.+++.+++++..++..+++++.+|+...    ....++||+|++
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence            36899999999999999988755 8999999999999999999888888999999998652    122457899985

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.96  E-value=3.5e-09  Score=82.21  Aligned_cols=90  Identities=16%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccC-----CCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADML-----DLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~-----~~~~~~~~~D~v~~~   74 (201)
                      +++|||+|||+|.++..+++.|..+|+++|+++.++....+.   .  +++. +...|+.     .+...-..+|+++++
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~---~--~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS  150 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ---D--ERVKVLERTNIRYVTPADIFPDFATFDVSFIS  150 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc---C--CCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence            468999999999999999999877999999999877652211   1  1221 2222332     222222467777653


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                       ..++..+.+.|++ |.+++..
T Consensus       151 ~-----------------------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       151 L-----------------------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             h-----------------------HhHHHHHHHHhCc-CeEEEEc
Confidence            2                       2368889999999 8766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.96  E-value=3.7e-09  Score=83.90  Aligned_cols=72  Identities=22%  Similarity=0.371  Sum_probs=61.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +++|||+|||+|.++..+++.+. +++++|+++.+++.+++++..  .+++.++++|+..++++  .+|.|+++..+
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNLPY  101 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcCCc
Confidence            46899999999999999999865 899999999999999988754  35899999999887654  47999987554

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.95  E-value=5.5e-09  Score=84.45  Aligned_cols=102  Identities=21%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      ...+|+|+|.|..+..++...+ ++-+++++...+-.+...+. .   .|..+.+|+++. .|.+  |+|++.+++|++ 
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P~~--daI~mkWiLhdw-  249 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TPKG--DAIWMKWILHDW-  249 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CCCc--CeEEEEeecccC-
Confidence            4679999999999999999544 89999999877777666653 2   478889999875 4444  799999999986 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                  ..+++.++|+++++.|+|+|.+++.+...+.
T Consensus       250 ------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  250 ------------TDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             ------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence                        6689999999999999999999999875443

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.94  E-value=5.8e-09  Score=83.70  Aligned_cols=101  Identities=19%  Similarity=0.327  Sum_probs=78.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++.|||+|||+|.++...++.|.++|++++. .+|.+.|++..+.+. ..+|.++.+.++++.+| ++.|++|+- .+..
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE-PMG~  254 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE-PMGY  254 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec-cchh
Confidence            4679999999999999999999999999997 558889988887766 56899999999988776 678999863 2333


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      ++.|            +......-..++.|+|.|.++
T Consensus       255 mL~N------------ERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  255 MLVN------------ERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             hhhh------------HHHHHHHHHHHhhcCCCCccc
Confidence            3222            233333334568999999987

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.94  E-value=5.9e-09  Score=81.89  Aligned_cols=99  Identities=12%  Similarity=0.100  Sum_probs=80.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-C-C-----CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-P-F-----SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~-~-----~~~~~D~   70 (201)
                      +++|||+|+++|+-+..++...+ . +++++|.+++..+.|++++...+ .++|+++.+|+.+. + +     ..++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            46899999999999999987632 3 99999999999999999999887 46799999998652 2 1     1258999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      |+..    +              .+......++.+.+.|+|||.+++
T Consensus       160 iFiD----a--------------dK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        160 IFVD----A--------------DKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEec----C--------------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence            9852    1              346678888999999999999775

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.94  E-value=4.6e-09  Score=84.18  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=75.6

Q ss_pred             cEEEecCCCChh----hHHHHhcC----CC-eEEEEECCHHHHHHHHHHH------------------hh-----cC---
Q 028957            3 SVLELGCGNSRL----SEGLYNDG----IT-AITCIDLSAVAVEKMQERL------------------LL-----KG---   47 (201)
Q Consensus         3 ~vLDlG~G~G~~----~~~l~~~~----~~-~v~~vD~~~~~~~~~~~~~------------------~~-----~~---   47 (201)
                      +|+..||.||.-    +..+....    .. +|+|+|+|+.+++.|++..                  ..     .+   
T Consensus       118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~  197 (287)
T PRK10611        118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR  197 (287)
T ss_pred             EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence            799999999953    22222321    12 8999999999999998741                  00     00   


Q ss_pred             -----CCceEEEEcccCCCCCC-CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           48 -----YKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        48 -----~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                           ...|.|.+.|+.+.+++ .+.||+|+|.+++.++             ..+...++++++.+.|+|||.|++-
T Consensus       198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-------------~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-------------DKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                 13467888888764432 5789999999888665             4567899999999999999987753

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.93  E-value=7.7e-09  Score=78.18  Aligned_cols=124  Identities=17%  Similarity=0.316  Sum_probs=74.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      ..|-|+|||.+.++..+. .+. .|...|+-+.               +-.++..|+..+|+++++.|++++...+-.  
T Consensus        74 ~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLMG--  134 (219)
T PF05148_consen   74 LVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLMG--  134 (219)
T ss_dssp             S-EEEES-TT-HHHHH---S----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES---S--
T ss_pred             EEEEECCCchHHHHHhcc-cCc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhhC--
Confidence            468999999999986543 223 7999998431               335788999999999999999997544421  


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc-c-CCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF-N-APQFTWSVEWITFGDGFHYFFYILRKG  158 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (201)
                                    .+...++.+..|+||+||.+.+.+..........+ . -....+........+.+.+.+.+.+..
T Consensus       135 --------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  135 --------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             --------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred             --------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence                          46789999999999999999998765432221111 1 234567777777777766666665555

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=8.1e-10  Score=84.20  Aligned_cols=104  Identities=20%  Similarity=0.368  Sum_probs=87.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      ..++|+||+-|.+...+...+..+++-+|.|..|++.++.. ....+ .+....+|-+.+++.++++|+++++..+|+. 
T Consensus        74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW~-  150 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHWT-  150 (325)
T ss_pred             cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhhhh-
Confidence            46899999999999999988877999999999999998754 22222 4567888988899999999999999999877 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                    .++...+.+++..|||+|.++...+..
T Consensus       151 --------------NdLPg~m~~ck~~lKPDg~Fiasmlgg  177 (325)
T KOG2940|consen  151 --------------NDLPGSMIQCKLALKPDGLFIASMLGG  177 (325)
T ss_pred             --------------ccCchHHHHHHHhcCCCccchhHHhcc
Confidence                          677889999999999999988665543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.93  E-value=9.4e-09  Score=82.25  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=59.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..   ++++++++|+..++++.-.++.|+++-.
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLP  114 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence            46899999999999999999976 999999999999999887643   4899999999887654322477887643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.8e-09  Score=76.60  Aligned_cols=76  Identities=21%  Similarity=0.332  Sum_probs=65.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++++|+|||.|-++...+..+...|+|+|+++++++.+.+|.....+ ++.+.+.|..++.+..+.||.++.+..|
T Consensus        49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCC
Confidence            688999999999999777766777999999999999999999887765 6789999999887778899999975444

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=6.6e-09  Score=88.26  Aligned_cols=101  Identities=26%  Similarity=0.465  Sum_probs=73.5

Q ss_pred             CcEEEecCCCChhhHHHHhcC-----CCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      ..|+|+|||+|-++...++++     ..+|+++|-++.+...+++++..++. ++|+++.+|+++...+ .++|+|++=.
T Consensus       188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSEl  266 (448)
T PF05185_consen  188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSEL  266 (448)
T ss_dssp             -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE--
T ss_pred             eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEec
Confidence            569999999999998887764     33999999999888888776565553 6799999999998765 4899999732


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      . ..+    +        ..+.....+....+.|||+|.++
T Consensus       267 L-Gsf----g--------~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 L-GSF----G--------DNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             --BTT----B--------TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             c-CCc----c--------ccccCHHHHHHHHhhcCCCCEEe
Confidence            1 111    1        11345667888899999999877

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.3e-09  Score=78.28  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC--eEEEEECCHHHHHHHHHHHhhcC----------CCceEEEEcccCCCCCCCCc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT--AITCIDLSAVAVEKMQERLLLKG----------YKEVKVLEADMLDLPFSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~--~v~~vD~~~~~~~~~~~~~~~~~----------~~~i~~~~~d~~~~~~~~~~   67 (201)
                      |.+.||+|+|+|+++.+++.. +..  .++|||.-++.++.+++++...-          ..++.++.+|......+..+
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~  162 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP  162 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence            578999999999999999865 333  55999999999999999875432          24678899999887777789


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ||.|.+....                     .++.+++...|++||++++-
T Consensus       163 YDaIhvGAaa---------------------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  163 YDAIHVGAAA---------------------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             cceEEEccCc---------------------cccHHHHHHhhccCCeEEEe
Confidence            9999985332                     45667788889999998864

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.91  E-value=3.5e-10  Score=86.12  Aligned_cols=99  Identities=23%  Similarity=0.412  Sum_probs=75.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~   79 (201)
                      +++||+|||||..+..+..+.. +++|+|+|..|++.+.++--.   +  ...++++..+  ......||+|++..++-+
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y  200 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLTQERFDLIVAADVLPY  200 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence            5899999999999988876644 899999999999999875211   1  2344444322  144678999999877765


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +               -.+..++.-....|+|||.+.+..-+
T Consensus       201 l---------------G~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         201 L---------------GALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             h---------------cchhhHHHHHHHhcCCCceEEEEecc
Confidence            5               46788899999999999999876544

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.91  E-value=1.4e-08  Score=76.45  Aligned_cols=97  Identities=24%  Similarity=0.327  Sum_probs=81.1

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      +++|+|+|.|.-+..++-..+. +++.+|.....+...+......+++|+++++..+++ .....+||+|++.++     
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-----  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV-----  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS-----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh-----
Confidence            6999999999999999888776 999999999999999988888888899999999988 444689999998665     


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                    .....+++-+.+.+++||.+++.-
T Consensus       125 --------------~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --------------APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --------------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --------------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence                          355788899999999999988754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=5.8e-09  Score=84.13  Aligned_cols=74  Identities=26%  Similarity=0.442  Sum_probs=62.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+ .++++++++|+...+.  ..+|+|+++..+
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY  111 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPY  111 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCc
Confidence            46899999999999999998865 89999999999999999987654 4689999999987654  468999986554

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.90  E-value=1.5e-08  Score=80.16  Aligned_cols=72  Identities=28%  Similarity=0.429  Sum_probs=59.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCcee---EEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD---VVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D---~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++.+. .|+++|+++.+++.+++++..  .+++.++.+|+...+++  .+|   +|+++..+
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy  104 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSNLPY  104 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence            46899999999999999999876 799999999999999987654  35889999999887654  466   77765443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=4.4e-08  Score=81.12  Aligned_cols=122  Identities=20%  Similarity=0.320  Sum_probs=91.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC---eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~---~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      |.+|||++++.|+-|..+++...+   .|+++|.++..++.+++++...+..++..+..|....+   ....+||.|+..
T Consensus       157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlD  236 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLD  236 (355)
T ss_pred             cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEEC
Confidence            578999999999999999988542   57999999999999999999999888888888877543   222359999942


Q ss_pred             c---ccceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 A---TMEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~---~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .   ....+--+++..|...+.....    ..++|....++|||||.|+..+++.
T Consensus       237 aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         237 APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             CCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            1   1122223344445544443333    5688999999999999999988764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=1.4e-08  Score=82.76  Aligned_cols=105  Identities=20%  Similarity=0.219  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|+|+.||-|.++..+|..+...|+++|+++.+++.+++|+..++..+ +..+++|+..+....+.+|-|+++..   
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p---  265 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP---  265 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC---
Confidence            67899999999999999999987679999999999999999999988655 88999999987655578999997532   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                      ....+++....+.+++||.+.+.++.+..
T Consensus       266 ----------------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         266 ----------------KSAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             ----------------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence                            23456788888888999998887766543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.86  E-value=4.2e-09  Score=80.48  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=83.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC--CCceEEEEcccCCC--CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--YKEVKVLEADMLDL--PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~   76 (201)
                      |.+|||.+.|-|+.+++.+++|..+|+.++.++.+++.|.-|--..+  ...+.++.+|+.++  .+++.+||+|+-   
T Consensus       135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH---  211 (287)
T COG2521         135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH---  211 (287)
T ss_pred             CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee---
Confidence            57899999999999999999998899999999999998876533222  23579999998864  478899999983   


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                              ++|=+... ..--...+.++++++|+|||.++-..-+
T Consensus       212 --------DPPRfS~A-geLYseefY~El~RiLkrgGrlFHYvG~  247 (287)
T COG2521         212 --------DPPRFSLA-GELYSEEFYRELYRILKRGGRLFHYVGN  247 (287)
T ss_pred             --------CCCccchh-hhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence                    22222111 1122578999999999999999865433

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.86  E-value=1.3e-08  Score=84.94  Aligned_cols=98  Identities=27%  Similarity=0.324  Sum_probs=77.1

Q ss_pred             CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||++||+|.++..++.. +..+|+++|+++.+++.+++|++.+++.++.+.+.|+..+....+.||+|+..      
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD------  132 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID------  132 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC------
Confidence            47999999999999999775 43489999999999999999999888777889999987632113579999862      


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                            |.       .....++....+.+++||.+++.
T Consensus       133 ------P~-------Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        133 ------PF-------GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ------CC-------CCcHHHHHHHHHHhcCCCEEEEE
Confidence                  21       11245777767778999999876

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.86  E-value=1.6e-08  Score=76.96  Aligned_cols=96  Identities=23%  Similarity=0.337  Sum_probs=70.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|+|+.||-|.++..+++.+ ...|+++|+++.+++.+++++..+++. ++..+.+|+..+.. .+.+|-|+++..  
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp--  178 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP--  178 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T--
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh--
Confidence            5689999999999999999843 338999999999999999999988854 47899999988654 688999997532  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                       .....++..+...+++||.+-
T Consensus       179 -----------------~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  179 -----------------ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -----------------SSGGGGHHHHHHHEEEEEEEE
T ss_pred             -----------------HHHHHHHHHHHHHhcCCcEEE
Confidence                             122457888889999988753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.84  E-value=7e-08  Score=76.36  Aligned_cols=105  Identities=21%  Similarity=0.316  Sum_probs=84.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCC---CeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCC---CCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI---TAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~---~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      -+|||++||.|.....+....+   .++...|.++..++..++..+..++.++ +|.++|+++..   .-....++++.+
T Consensus       137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs  216 (311)
T PF12147_consen  137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS  216 (311)
T ss_pred             eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence            4799999999999988877633   3999999999999999999999998777 99999998742   113356999988


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +.+..+            ...+.+...++.+.+.+.|||+++..
T Consensus       217 GL~ElF------------~Dn~lv~~sl~gl~~al~pgG~lIyT  248 (311)
T PF12147_consen  217 GLYELF------------PDNDLVRRSLAGLARALEPGGYLIYT  248 (311)
T ss_pred             cchhhC------------CcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence            877654            12244677899999999999999864

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.83  E-value=1.9e-08  Score=83.63  Aligned_cols=58  Identities=21%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      .+|||++||+|.++..+++... +|+++|.++.+++.++++...+++.+++++.+|+.+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            4799999999999998877644 999999999999999999988888789999999876

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.81  E-value=2.4e-08  Score=82.69  Aligned_cols=58  Identities=19%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      .+|||++||+|.++..+++... +|+++|.++++++.+++++..+++.+++++++|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            3699999999999998887754 999999999999999999998888789999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.78  E-value=1.3e-08  Score=74.67  Aligned_cols=71  Identities=21%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC--CCCCc-eeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP--FSNDC-FDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~-~D~v~~   73 (201)
                      ..|+|+.||.|+.++.+|+... +|+++|+++..++.++.|..-.+ .++|.++++|+.++.  ..... +|+|++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            4799999999999999999965 99999999999999999999888 468999999998742  22222 799986

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.77  E-value=9.5e-08  Score=75.79  Aligned_cols=104  Identities=19%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             CcEEEecCCCCh----hhHHHHhcC-----CC-eEEEEECCHHHHHHHHHHHhh-----c----------------C---
Q 028957            2 TSVLELGCGNSR----LSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLL-----K----------------G---   47 (201)
Q Consensus         2 ~~vLDlG~G~G~----~~~~l~~~~-----~~-~v~~vD~~~~~~~~~~~~~~~-----~----------------~---   47 (201)
                      -+|+-.||+||.    ++..+.+.+     .. +++|+|+|..+++.|+.-.=.     .                +   
T Consensus        98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~  177 (268)
T COG1352          98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR  177 (268)
T ss_pred             eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence            379999999995    333333333     23 999999999999988763100     0                0   


Q ss_pred             -----CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           48 -----YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        48 -----~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                           ...|.|...|+...+...+.||+|+|.+++-.+             +.+...++++.++..|+|||.|++-
T Consensus       178 v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-------------d~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         178 VKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-------------DEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-------------CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                 124677888877655345789999999998655             4567889999999999999999864

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.76  E-value=4.4e-07  Score=69.47  Aligned_cols=140  Identities=17%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             EEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCc-eeEEEecccccee
Q 028957            4 VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDC-FDVVIEKATMEVL   80 (201)
Q Consensus         4 vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~-~D~v~~~~~l~~~   80 (201)
                      |.|+||--|++...+++.+.. +++++|+++..++.|++++...+ ..++.+..+|.... ++.+. .|+|+..++    
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGM----   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGM----   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecC----
Confidence            689999999999999999876 89999999999999999999887 55699999997652 33343 788885443    


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR  160 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (201)
                                   +-..+.+++++....++....+++...+.......++...++....+.-...++..|.......+..
T Consensus        76 -------------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~  142 (205)
T PF04816_consen   76 -------------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEE  142 (205)
T ss_dssp             --------------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             -------------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCC
Confidence                         2356788999888888777788887666665555666666666665555566666666666665444


Q ss_pred             C
Q 028957          161 S  161 (201)
Q Consensus       161 ~  161 (201)
                      .
T Consensus       143 ~  143 (205)
T PF04816_consen  143 K  143 (205)
T ss_dssp             -
T ss_pred             C
Confidence            3

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.75  E-value=8.5e-08  Score=76.68  Aligned_cols=106  Identities=25%  Similarity=0.372  Sum_probs=82.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~~   75 (201)
                      ++||-+|.|.|..+.++++... .+++.+|+++.+++.+++.+....    -++++++..|.... .-...+||+|++. 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D-  156 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD-  156 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc-
Confidence            5899999999999999999864 499999999999999999886554    37889999998763 2223489999963 


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                              +.+| . .|...-.-..+++.+.+.|+++|.++..
T Consensus       157 --------~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         157 --------STDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             --------CCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence                    2233 1 1111122478999999999999999977

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.74  E-value=3.9e-08  Score=76.35  Aligned_cols=119  Identities=18%  Similarity=0.406  Sum_probs=82.0

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV   82 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~   82 (201)
                      .|-|+|||.+.++.    .....|+..|+-+               .+-+++..|+.++|+++++.|++++...+  +  
T Consensus       183 vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL--M--  239 (325)
T KOG3045|consen  183 VIADFGCGEAKIAS----SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSL--M--  239 (325)
T ss_pred             EEEecccchhhhhh----ccccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhh--h--
Confidence            58899999988765    3234899999833               25578999999999999999999864333  2  


Q ss_pred             cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccccccc--CCCCceEEEEEEeCCeeeEEEEEEE
Q 028957           83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN--APQFTWSVEWITFGDGFHYFFYILR  156 (201)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  156 (201)
                                  -.++..++.++.|+|++||.+++.+.......-..+.  .....|...-....+.+.++|.+.+
T Consensus       240 ------------gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  240 ------------GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             ------------cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence                        1467899999999999999999987655432222222  1234455555555555555544433

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.74  E-value=3.4e-08  Score=77.84  Aligned_cols=108  Identities=23%  Similarity=0.353  Sum_probs=78.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCC-ceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSND-CFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~-~~D~v~~   73 (201)
                      +++||-+|.|.|..+.++++.. ..+++.+|+++.+++.+++.+....    -++++++.+|+... .-..+ +||+|+.
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~  156 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV  156 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence            4789999999999999998875 3499999999999999999776432    25899999998753 22234 8999995


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...         +|..+.+.  --...+++.+.+.|+|+|.+++..
T Consensus       157 D~~---------dp~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  157 DLT---------DPDGPAPN--LFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             ESS---------STTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCC---------CCCCCccc--ccCHHHHHHHHhhcCCCcEEEEEc
Confidence            321         23222111  224789999999999999998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK04148 hypothetical protein; Provisional

Probab=98.74  E-value=2.5e-07  Score=65.67  Aligned_cols=95  Identities=15%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             CCcEEEecCCCCh-hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~-~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~   78 (201)
                      +.+|+|+|||+|. ++..+++.|. +|+++|+++..++.++++       .++++..|+++-.+. -..+|+|.+.    
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysi----   84 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSI----   84 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEe----
Confidence            3679999999996 8888888887 999999999998888765       468899999875432 2568999873    


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                    +...++...+.++.+.+  |.-+++...+..
T Consensus        85 --------------rpp~el~~~~~~la~~~--~~~~~i~~l~~e  113 (134)
T PRK04148         85 --------------RPPRDLQPFILELAKKI--NVPLIIKPLSGE  113 (134)
T ss_pred             --------------CCCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence                          23356666666666654  345666655543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.73  E-value=5.7e-08  Score=80.77  Aligned_cols=98  Identities=14%  Similarity=0.275  Sum_probs=79.7

Q ss_pred             CcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~   78 (201)
                      -+|||+.||+|..++.++..  +..+|+++|+++..++.+++|++.++..++.+++.|+..+- .....||+|..     
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl-----  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI-----  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe-----
Confidence            37999999999999999987  55699999999999999999999888777899999988642 22357999985     


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                             ||+       .....++..+.+.++++|.+.+.
T Consensus       121 -------DPf-------Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       121 -------DPF-------GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             -------CCC-------CCcHHHHHHHHHhcccCCEEEEE
Confidence                   221       11246888889999999998876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.68  E-value=1.1e-07  Score=77.32  Aligned_cols=78  Identities=15%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc-CC-CceEEEE-cccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GY-KEVKVLE-ADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~-~~-~~i~~~~-~d~~~~~----~~~~~~D~v~~   73 (201)
                      .++||||||+|.+...++...+. +++|+|+++.+++.|++++..+ ++ .++.+.. .|...+.    .+.+.||+|+|
T Consensus       116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc  195 (321)
T PRK11727        116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC  195 (321)
T ss_pred             ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence            58999999999888888766444 9999999999999999999987 44 3576653 3332211    23568999999


Q ss_pred             ccccce
Q 028957           74 KATMEV   79 (201)
Q Consensus        74 ~~~l~~   79 (201)
                      +-.++.
T Consensus       196 NPPf~~  201 (321)
T PRK11727        196 NPPFHA  201 (321)
T ss_pred             CCCCcC
Confidence            866643

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.67  E-value=1.3e-07  Score=72.53  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=80.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++++|+|+|.|.-+..++-..+. +|+.+|.....+...+......+++|++++++.++++......||+|++.++   
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv---  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV---  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence            379999999999999998855555 8999999999999998888888898999999999886532111999998654   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                                      ..+..+.+-+...+++||.+++
T Consensus       145 ----------------a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         145 ----------------ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             ----------------cchHHHHHHHHHhcccCCcchh
Confidence                            4556788888999999998754

>PRK00536 speE spermidine synthase; Provisional

Probab=98.67  E-value=2.8e-07  Score=72.94  Aligned_cols=95  Identities=19%  Similarity=0.288  Sum_probs=72.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +++||=+|.|.|..++++++... +|+.+|+++++++.+++.++...    -++++++.. +.  ....++||+|+....
T Consensus        73 pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~  148 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE  148 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC
Confidence            57999999999999999999864 99999999999999999655432    356666642 11  122368999996432


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +                    ...+.+.+++.|+|||.++...
T Consensus       149 ~--------------------~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        149 P--------------------DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             C--------------------ChHHHHHHHHhcCCCcEEEECC
Confidence            1                    1467789999999999988654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.67  E-value=3.5e-08  Score=73.17  Aligned_cols=99  Identities=22%  Similarity=0.299  Sum_probs=80.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      +.+.|+|+|+|-++...+.. ..+|++++.++.....+.+|+.-.+..+++++.+|+.+..+  ...|+|+|-+ ++..+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL  109 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL  109 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence            46789999999999877766 44999999999999999999887788899999999998877  4579999843 33332


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      .            .+....++..+.+.|+.+++++
T Consensus       110 i------------~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         110 I------------EEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             h------------cccccHHHHHHHHHhhcCCccc
Confidence            1            2445678888888999998877

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.9e-07  Score=79.06  Aligned_cols=71  Identities=25%  Similarity=0.306  Sum_probs=62.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~   73 (201)
                      +++||+=||.|.++..+++... +|+|+|+++++++.|+++.+.++..|+.|..+++..+...   ...+|+|+.
T Consensus       295 ~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         295 ERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             CEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            6899999999999999997765 9999999999999999999999988999999999875422   347899985

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.5e-07  Score=73.94  Aligned_cols=74  Identities=26%  Similarity=0.374  Sum_probs=62.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCC-ceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~D~v~~~~~l   77 (201)
                      +++|||+|+|.|.+|..+++.+. .|+++|+++.+++..++.+..  ..+++++.+|+...+++.- .++.|++|-.+
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence            46899999999999999999988 899999999999999998763  3589999999998876542 57888876443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.62  E-value=6e-07  Score=80.70  Aligned_cols=111  Identities=15%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-------------------------------------------CCeEEEEECCHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-------------------------------------------ITAITCIDLSAVAVE   37 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-------------------------------------------~~~v~~vD~~~~~~~   37 (201)
                      +..++|.+||+|++.++.+...                                           ..+++|+|+++.+++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            3579999999999999987521                                           016999999999999


Q ss_pred             HHHHHHhhcCCC-ceEEEEcccCCCCCC--CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc---cC
Q 028957           38 KMQERLLLKGYK-EVKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL---KP  111 (201)
Q Consensus        38 ~~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---~~  111 (201)
                      .|++|+...++. .+.+.++|+.+++.+  .+++|+|+++           +||...-....+...+.+.+.+.+   .+
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN-----------PPYg~r~~~~~~l~~lY~~lg~~lk~~~~  339 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN-----------PPYGERLGEEPALIALYSQLGRRLKQQFG  339 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC-----------CCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence            999999988864 488999999887543  3579999986           444432223344455555544444   38


Q ss_pred             CcEEEEEecCC
Q 028957          112 DGLFISVSFGQ  122 (201)
Q Consensus       112 gG~l~~~~~~~  122 (201)
                      |+.+++.+...
T Consensus       340 g~~~~llt~~~  350 (702)
T PRK11783        340 GWNAALFSSSP  350 (702)
T ss_pred             CCeEEEEeCCH
Confidence            88888776543

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.60  E-value=2.2e-07  Score=72.66  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=62.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      ++.|||+|.|||.++..+++.+. +|+++|+++.|+...+++..... ....+++.+|....++  ..||.++++..
T Consensus        59 tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsNlP  132 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCVSNLP  132 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--cccceeeccCC
Confidence            46899999999999999999987 99999999999999999876554 3468999999987654  46899997543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.60  E-value=2.5e-07  Score=72.89  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=76.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC----------------------------Cce-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY----------------------------KEV-   51 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~----------------------------~~i-   51 (201)
                      |.++||+|||+-..-...+...++++++.|..+...+..+++++..+.                            ..| 
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk  136 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK  136 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred             CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence            458999999996554444444556999999999999988887654311                            113 


Q ss_pred             EEEEcccCCCC-CCC-----CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           52 KVLEADMLDLP-FSN-----DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        52 ~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++..|+.+.+ +..     .+||+|++.+++....           ...+...++++++.++|||||.|++...
T Consensus       137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~-----------~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC-----------KDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH------------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            37788988643 222     3599999999998773           3457789999999999999999998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.58  E-value=4.6e-08  Score=73.51  Aligned_cols=109  Identities=24%  Similarity=0.396  Sum_probs=65.9

Q ss_pred             CcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C--CCCcee
Q 028957            2 TSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F--SNDCFD   69 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~--~~~~~D   69 (201)
                      .+|||+||++|+++..+++.+  ..+|+++|+.+.           ...+++..+++|..+..        +  ....+|
T Consensus        25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d   93 (181)
T PF01728_consen   25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFD   93 (181)
T ss_dssp             EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred             cEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCcc
Confidence            689999999999999999997  239999999765           11235566666654311        1  126899


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  125 (201)
                      +|++.......    +.+..+.....+.....+.-+.+.|+|||.+++..+..+..
T Consensus        94 lv~~D~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~  145 (181)
T PF01728_consen   94 LVLSDMAPNVS----GDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI  145 (181)
T ss_dssp             EEEE-----------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred             eeccccccCCC----CchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence            99987644322    11111111122234455556667899999999887775554

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.55  E-value=1.3e-06  Score=66.98  Aligned_cols=100  Identities=19%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC------CCCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL------PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~------~~~~~~~D~v   71 (201)
                      ++++||+|.=||+-+..+|..-+.  +|+++|++++..+.+.+..+..+. ..|+++++++...      ....++||.+
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            478999999999999888887544  999999999999999888777763 4689999987642      1346789999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +.    ++              .+.......+++.+++++||.+++-
T Consensus       154 Fv----Da--------------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  154 FV----DA--------------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EE----cc--------------chHHHHHHHHHHHhhcccccEEEEe
Confidence            84    22              2456679999999999999998863

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=3.8e-07  Score=68.15  Aligned_cols=104  Identities=16%  Similarity=0.244  Sum_probs=77.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|+|+|..++..+..|...|++.|+++.....+.-|.+.+++ .+.+...|...   ++..+|+++...++.  
T Consensus        80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g---~~~~~Dl~LagDlfy--  153 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG---SPPAFDLLLAGDLFY--  153 (218)
T ss_pred             cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC---CCcceeEEEeeceec--
Confidence            689999999999999999999988999999999988888888887774 67888777654   467899999765442  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE-EEEEecCCcc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-FISVSFGQPH  124 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-l~~~~~~~~~  124 (201)
                                   +.....+++. ....++..|. +++-++.++.
T Consensus       154 -------------~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         154 -------------NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             -------------CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence                         2355566777 5555555555 5544544443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.54  E-value=1.4e-06  Score=71.06  Aligned_cols=104  Identities=19%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             CcEEEecCCCChhhHHHHhc----C-CCeEEEEECCHHHHHHHHHHHhhcCCCceEE--EEcccCCC----CC--CCCce
Q 028957            2 TSVLELGCGNSRLSEGLYND----G-ITAITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDL----PF--SNDCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~----~~--~~~~~   68 (201)
                      ..++|+|||+|.-+..++..    + ...++++|+|.+.++.+.+++.....+.+.+  +++|..+.    +-  .....
T Consensus        78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~  157 (319)
T TIGR03439        78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP  157 (319)
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence            47999999999987776654    2 2289999999999999999987444556655  88887652    11  12335


Q ss_pred             eEEEecc-ccceeeecCCCCCCCCCccHHHHHHHHHHHhh-cccCCcEEEEE
Q 028957           69 DVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VLKPDGLFISV  118 (201)
Q Consensus        69 D~v~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~~~  118 (201)
                      .+++..+ ++..+             ...+...+|+++.+ .|+|||.+++-
T Consensus       158 r~~~flGSsiGNf-------------~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       158 TTILWLGSSIGNF-------------SRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             cEEEEeCccccCC-------------CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            6666532 33322             34678899999999 99999998873

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.54  E-value=5.4e-07  Score=72.17  Aligned_cols=108  Identities=18%  Similarity=0.166  Sum_probs=70.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|..+..+....  ..+++++|.|+.+++.++..+.............+......+....|+|+++++|.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~  113 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN  113 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence            4689999999998776655542  23999999999999999887654321111101111111011122349999999887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      .+            .. ....++++++.+.+++  .+++++...+
T Consensus       114 EL------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen  114 EL------------PS-AARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             cC------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            76            23 5667888888877765  7777776544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.54  E-value=1.3e-07  Score=75.95  Aligned_cols=121  Identities=23%  Similarity=0.306  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~   76 (201)
                      |.+|||++++.|+-+..++....  ..+++.|+++..+...++++...+..++.....|.....  .....||.|+....
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP  165 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP  165 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence            46899999999999999988744  399999999999999999999999888998888877642  22346999995211


Q ss_pred             ---cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcc----cCCcEEEEEecC
Q 028957           77 ---MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVL----KPDGLFISVSFG  121 (201)
Q Consensus        77 ---l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L----~~gG~l~~~~~~  121 (201)
                         ...+--+.+..|...++....    ..++|++..+.+    +|||+++..+++
T Consensus       166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence               111111111112112222222    468899999999    999999988775

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.52  E-value=1.6e-06  Score=71.45  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=81.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC----------------------------------------eEEEEECCHHHHHHHHH
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT----------------------------------------AITCIDLSAVAVEKMQE   41 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~----------------------------------------~v~~vD~~~~~~~~~~~   41 (201)
                      ..++|--||+|++.++.|..+.+                                        .++|+|+++.+++.|+.
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            46899999999999999877531                                        27799999999999999


Q ss_pred             HHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEE
Q 028957           42 RLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        42 ~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~  116 (201)
                      |....++ +.|.|.++|+..+..+...+|+||||-           ||-.......    -+..+.+.+++.++.-+..+
T Consensus       273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-----------PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v  341 (381)
T COG0116         273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-----------PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV  341 (381)
T ss_pred             HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-----------CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence            9998884 458999999998865447899999874           4432222222    34566667777777777777


Q ss_pred             EEec
Q 028957          117 SVSF  120 (201)
Q Consensus       117 ~~~~  120 (201)
                      +++.
T Consensus       342 ~tt~  345 (381)
T COG0116         342 FTTS  345 (381)
T ss_pred             EEcc
Confidence            6654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.51  E-value=9.5e-07  Score=71.95  Aligned_cols=118  Identities=24%  Similarity=0.352  Sum_probs=73.5

Q ss_pred             CcEEEecCCCChhhHHHHhc--------CCCeEEEEECCHHHHHHHHHHHhhcC--CCceEEEEcccCCCCC-C-CCcee
Q 028957            2 TSVLELGCGNSRLSEGLYND--------GITAITCIDLSAVAVEKMQERLLLKG--YKEVKVLEADMLDLPF-S-NDCFD   69 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~--------~~~~v~~vD~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~-~-~~~~D   69 (201)
                      .+|+|.+||+|.+...+...        ....++|+|+++.++..++-++.-.+  ..+..+..+|....+. . ...||
T Consensus        48 ~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D  127 (311)
T PF02384_consen   48 DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFD  127 (311)
T ss_dssp             EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EE
T ss_pred             ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            57999999999999888763        22399999999999999988775554  2334688888765432 2 47899


Q ss_pred             EEEecccccee-eecCC---CC-CCC--CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVL-FVNSG---DP-WNP--QPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~-~~~~~---~~-~~~--~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +|+++-.+... +.+..   ++ |..  .+.. ..--.++..+.+.|+++|++.++.+
T Consensus       128 ~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  128 VIIGNPPFGSKEWKDEELEKDERFKKYFPPKS-NAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             EEEEE--CTCES-STGGGCTTCCCTTCSSSTT-EHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCCccccccccccccccccccccCCCcc-chhhhhHHHHHhhcccccceeEEec
Confidence            99997555433 10000   00 110  0111 1223588999999999999776654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.49  E-value=5.7e-08  Score=81.95  Aligned_cols=99  Identities=27%  Similarity=0.485  Sum_probs=66.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEE---ECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~v---D~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      .++||+|||.|+++..++.++. ....+   |..+..++.|.++    |++-+--+ .--..+|++++.||+|-|+.++ 
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s~rLPfp~~~fDmvHcsrc~-  191 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGSQRLPFPSNAFDMVHCSRCL-  191 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Ccchhhhh-hccccccCCccchhhhhccccc-
Confidence            3689999999999999998865 22222   3334445555433    22221111 1124689999999999998776 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                             .||....      .-+|-++.|+|+|||++++...
T Consensus       192 -------i~W~~~~------g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  192 -------IPWHPND------GFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             -------ccchhcc------cceeehhhhhhccCceEEecCC
Confidence                   3564321      3588899999999999987654

; GO: 0008168 methyltransferase activity

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.46  E-value=1.4e-06  Score=75.92  Aligned_cols=73  Identities=23%  Similarity=0.376  Sum_probs=52.2

Q ss_pred             CcEEEecCCCChhhHHHHhcC--------C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCc
Q 028957            2 TSVLELGCGNSRLSEGLYNDG--------I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~--------~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~   67 (201)
                      .+|||.|||+|.++..++...        . ..++++|+++..+..++.++...+...+.+...|....     .-..+.
T Consensus        33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~  112 (524)
T TIGR02987        33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDL  112 (524)
T ss_pred             eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCc
Confidence            489999999999999887642        1 27999999999999999887665422344555543221     111257


Q ss_pred             eeEEEec
Q 028957           68 FDVVIEK   74 (201)
Q Consensus        68 ~D~v~~~   74 (201)
                      ||+|++|
T Consensus       113 fD~IIgN  119 (524)
T TIGR02987       113 FDIVITN  119 (524)
T ss_pred             ccEEEeC
Confidence            9999986

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.46  E-value=1.6e-07  Score=74.02  Aligned_cols=99  Identities=27%  Similarity=0.387  Sum_probs=79.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |..++|+|||.|..+..-   ....++++|++...+..+++.       +. ....+|+..++++..+||.+++..++|+
T Consensus        46 gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh  115 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIHH  115 (293)
T ss_pred             cceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence            456899999999776321   112799999998888777643       33 6788999999999999999999999999


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +            .......++++++.+.|+|||...+..+.
T Consensus       116 l------------sT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  116 L------------STRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             h------------hhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            8            36677889999999999999997765543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.8e-06  Score=65.55  Aligned_cols=111  Identities=23%  Similarity=0.258  Sum_probs=75.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      |..|+||||.+|++++.+++....  .|+++|+.+-           ...+++.++++|.+.-+        +....+|+
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv  114 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV  114 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence            578999999999999999887432  6999999652           22457899999987643        34455799


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR  126 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  126 (201)
                      |++.+.-...    +.+-.+.+........+++-...+|+|||.+++-.+......
T Consensus       115 V~sD~ap~~~----g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~  166 (205)
T COG0293         115 VLSDMAPNTS----GNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE  166 (205)
T ss_pred             EEecCCCCcC----CCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH
Confidence            9975433111    111112223333456677778889999999999887665443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.38  E-value=1.2e-06  Score=72.51  Aligned_cols=58  Identities=28%  Similarity=0.406  Sum_probs=47.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      .+|||+-||.|.++..++.... +|+|+|.++.+++.|++++..+++.|++++.+++.+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            3699999999999999988866 999999999999999999999999999999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.38  E-value=3.9e-06  Score=66.62  Aligned_cols=101  Identities=22%  Similarity=0.308  Sum_probs=73.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh---c--------------------------------
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL---K--------------------------------   46 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~---~--------------------------------   46 (201)
                      .+||--|||-|+++.+++..|+ .+.|.|.|--|+-...-.+..   .                                
T Consensus        58 ~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   58 IRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             cEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            5799999999999999999999 999999999886554432221   0                                


Q ss_pred             -----CCCceEEEEcccCCCCCCC---CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           47 -----GYKEVKVLEADMLDLPFSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        47 -----~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                           ...++....+|...+-.+.   ++||+|++.+.++.               .+++...++.|.++|||||..+=.
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---------------A~Ni~~Yi~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---------------AENIIEYIETIEHLLKPGGYWINF  201 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---------------hHHHHHHHHHHHHHhccCCEEEec
Confidence                 0013445555555443333   68999998665543               377889999999999999976643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=5.6e-06  Score=64.96  Aligned_cols=94  Identities=24%  Similarity=0.348  Sum_probs=71.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCC--CCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFS--NDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~~D~v~~~~   75 (201)
                      |.+|||-|.|+|.++..+++. ++. +++..|+.....+.+.+.++..++ +++.+...|+....+.  ...+|.|+   
T Consensus       106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF---  182 (314)
T KOG2915|consen  106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF---  182 (314)
T ss_pred             CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE---
Confidence            679999999999999999988 444 999999999999999999988874 5689999998775443  34455555   


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  114 (201)
                            .|-+.||.           ++..+..+||.+|.
T Consensus       183 ------LDlPaPw~-----------AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  183 ------LDLPAPWE-----------AIPHAAKILKDEGG  204 (314)
T ss_pred             ------EcCCChhh-----------hhhhhHHHhhhcCc
Confidence                  55667773           34445557776664

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.33  E-value=1.5e-05  Score=56.71  Aligned_cols=103  Identities=32%  Similarity=0.469  Sum_probs=70.4

Q ss_pred             EEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCC-CceeEEEeccccc
Q 028957            4 VLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSN-DCFDVVIEKATME   78 (201)
Q Consensus         4 vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~v~~~~~l~   78 (201)
                      ++|+|||+|..+ .+.....  ..++++|+++.++..+...........+.+...|...  .++.. ..||++......+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            899999999966 3333322  2788899999999885554432111116788888775  56655 4899994333222


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ..               . ....+.++.+.++|+|.+++......
T Consensus       131 ~~---------------~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         131 LL---------------P-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             cC---------------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            21               1 67899999999999999988776544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.31  E-value=1.9e-06  Score=64.83  Aligned_cols=111  Identities=17%  Similarity=0.312  Sum_probs=80.5

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-------CCceEEEEcccCCCCCCCCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-------YKEVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      .+.|||||-|.++..++...+. .++|.++.-.+.++.++++....       ++|+.+...++...-  .+-|..    
T Consensus        63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~k----  136 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEK----  136 (249)
T ss_pred             eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhh----
Confidence            4689999999999999998877 99999999888888888876553       566777777665421  222222    


Q ss_pred             cccceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +-+..+|+-+++|+++...+...  ...++++..-+|++||.++.++
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            22444555567887765544443  3578899999999999988764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.30  E-value=1.9e-06  Score=69.44  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=58.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCC--CceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN--DCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~D~v~~~   74 (201)
                      |..+||++||.|+.+..+++...  .+|+|+|.++++++.+++++..  .+++.++++|..++.  .+.  .++|.|++.
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D   97 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLD   97 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence            45899999999999999998853  3999999999999999998765  358999999987643  212  278988853

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.24  E-value=7.6e-06  Score=65.17  Aligned_cols=73  Identities=21%  Similarity=0.377  Sum_probs=58.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC---CceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~   76 (201)
                      ++.|||+|+|+|.+|..+++.+ .+++++|.++...+..++.+...  ++++++.+|+.+.....   .....|+++-.
T Consensus        31 ~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP  106 (262)
T PF00398_consen   31 GDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNLP  106 (262)
T ss_dssp             TSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred             CCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEec
Confidence            4689999999999999999998 59999999999999999877633  58999999998876433   34456666543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.24  E-value=1.5e-07  Score=70.85  Aligned_cols=92  Identities=20%  Similarity=0.359  Sum_probs=68.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.++||+|+|.|.++..++.... +|+++++|..|....+.+       +.+++. .+..+   .+-++|+|.|-+.++.
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk-------~ynVl~~~ew~~---t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKK-------NYNVLTEIEWLQ---TDVKLDLILCLNLLDR  181 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhc-------CCceeeehhhhh---cCceeehHHHHHHHHh
Confidence            36899999999999998877644 899999999888877653       222222 12222   2357999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccC-CcEEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP-DGLFISV  118 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~  118 (201)
                      +               -+.-++++.++.+|+| +|++++.
T Consensus       182 c---------------~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  182 C---------------FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             h---------------cChHHHHHHHHHHhccCCCcEEEE
Confidence            6               2456899999999998 8987753

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.23  E-value=6e-06  Score=59.34  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      ++||+|||.|.++..++..++. +++++|+++.+.+.+++++..++.+++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            5899999999999999988775 899999999999999999988776678888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.23  E-value=3.8e-06  Score=64.34  Aligned_cols=101  Identities=24%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHH-------hhcC--CCceEEEEcccCCCCCC---CCc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKG--YKEVKVLEADMLDLPFS---NDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~-------~~~~--~~~i~~~~~d~~~~~~~---~~~   67 (201)
                      ++..+|||||.|.....++.. +..+++|||+.+...+.++...       +..+  ..++.+..+|+.+.+..   -..
T Consensus        43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~  122 (205)
T PF08123_consen   43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD  122 (205)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred             CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence            357899999999998777654 6657999999999887776533       2222  34577788887653211   134


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      .|+|++++..   |             .+++...+.+....||+|.+++.
T Consensus       123 AdvVf~Nn~~---F-------------~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  123 ADVVFVNNTC---F-------------DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             -SEEEE--TT---T--------------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             CCEEEEeccc---c-------------CHHHHHHHHHHHhcCCCCCEEEE
Confidence            6999987543   1             14555666777788999888764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.20  E-value=1.8e-06  Score=65.72  Aligned_cols=97  Identities=21%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC----CCCCCceeEEEeccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL----PFSNDCFDVVIEKAT   76 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~~D~v~~~~~   76 (201)
                      ..|+|..||.|+.++..+..++ .|+++|+++.-+..|+.|++-.|+ ++|.|+++|+.++    .+....+|+|+.   
T Consensus        96 ~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~---  171 (263)
T KOG2730|consen   96 EVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL---  171 (263)
T ss_pred             chhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec---
Confidence            4688999999999999999988 899999999999999999988884 4699999998763    344445667664   


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  114 (201)
                              .+||--    ..-...-+-.+...+.|.|.
T Consensus       172 --------sppwgg----p~y~~~~~~DL~~~~~p~~~  197 (263)
T KOG2730|consen  172 --------SPPWGG----PSYLRADVYDLETHLKPMGT  197 (263)
T ss_pred             --------CCCCCC----cchhhhhhhhhhhhcchhHH
Confidence                    256642    23334444445555555544

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.15  E-value=3e-05  Score=64.33  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~   75 (201)
                      |.||||++|.+|+-+..+|....  ..+++.|.+...++..+.++...+..+..+...|...++   ++. +||-|+...
T Consensus       242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDA  320 (460)
T KOG1122|consen  242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDA  320 (460)
T ss_pred             CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecC
Confidence            57999999999998888877632  289999999999999999999999888888888887654   443 899998322


Q ss_pred             ccce---eeecCCCCCCCCCc----cHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEV---LFVNSGDPWNPQPE----TVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~---~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .-..   +.-+..--|.+...    ...-.++++....+++++||+++..+++.
T Consensus       321 PCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  321 PCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             CCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            1111   11111111221111    11125688889999999999999888764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.15  E-value=1.3e-05  Score=65.30  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      |+++||+||++|+++..++++|. .|++||..+ +-    ..+..  -++|.....|......+.+.+|.++|..+
T Consensus       212 g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        212 GMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            57899999999999999999988 999999544 21    22222  25889999988765433578999998543

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1.5e-05  Score=61.48  Aligned_cols=95  Identities=15%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCC---CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~---~~~~~~D~v~~~~~   76 (201)
                      |+.+||+|+-||+++..++++|..+|+++|.....+..--++   .  +++ .+...|+..+.   +. +..|++++.-+
T Consensus        80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d--~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvS  153 (245)
T COG1189          80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D--PRVIVLERTNVRYLTPEDFT-EKPDLIVIDVS  153 (245)
T ss_pred             CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C--CcEEEEecCChhhCCHHHcc-cCCCeEEEEee
Confidence            578999999999999999999999999999977655433222   1  243 33445555432   32 36788887544


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |                  -.+..++..+..+++++|.++...
T Consensus       154 F------------------ISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         154 F------------------ISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             h------------------hhHHHHHHHHHHhcCCCceEEEEe
Confidence            4                  346789999999999999977653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.10  E-value=4.7e-05  Score=62.30  Aligned_cols=109  Identities=26%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             CcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHH--hhcC-----CCceEEEEcccCCC-CCCCCceeEEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL--LLKG-----YKEVKVLEADMLDL-PFSNDCFDVVI   72 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~--~~~~-----~~~i~~~~~d~~~~-~~~~~~~D~v~   72 (201)
                      .+||-+|.|.|.-..++.+.. ..+++.+|++|+|++.++++.  ...+     -++++++..|+.+. .-..+.||+||
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI  370 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI  370 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence            479999999999999998874 559999999999999998543  2211     36789999998873 23345899988


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .         |.++|-++.. ..--...+...+.+.|+++|.+++..-
T Consensus       371 V---------Dl~DP~tps~-~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         371 V---------DLPDPSTPSI-GRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             E---------eCCCCCCcch-hhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            4         2234432211 001135778888999999999987643

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.09  E-value=5.6e-06  Score=68.55  Aligned_cols=105  Identities=23%  Similarity=0.266  Sum_probs=82.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      ..++|+|||-|.....++......+++++.++..+..+........+. +..++..|....+++++.||.+.+..+..  
T Consensus       112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~--  189 (364)
T KOG1269|consen  112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC--  189 (364)
T ss_pred             ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc--
Confidence            357899999999999998876569999999988877776655444332 23457788888889999999999855443  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   +.+....++++++++++|||.++..++.
T Consensus       190 -------------~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  190 -------------HAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             -------------cCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence                         3467789999999999999999976553

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=2.2e-06  Score=62.19  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCC--CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDL--PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~--~~~~~~~D~v~~   73 (201)
                      |.+|||+|.|- |.-+.++|...+. .|..+|-+++.++..++....+.   ..++..+..+....  ......||+|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            46799999996 4445555544333 99999999999988887654442   23333444333321  233468999999


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccccccc
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN  131 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~  131 (201)
                         .+++|++            +....+++.+...|+|.|.-++..+-+..-.+.++.
T Consensus       110 ---ADClFfd------------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d  152 (201)
T KOG3201|consen  110 ---ADCLFFD------------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD  152 (201)
T ss_pred             ---ccchhHH------------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence               4555544            566788899999999999977666555444444433

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.08  E-value=8.1e-05  Score=57.14  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~   75 (201)
                      |.+||-||+.+|+....++.- +.. .|++++.++...+......+..  +|+-.+-.|+..-.   .--+..|+|++.-
T Consensus        74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV  151 (229)
T PF01269_consen   74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQDV  151 (229)
T ss_dssp             T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred             CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEecC
Confidence            579999999999999988876 433 8999999998877776554443  58998999998621   1234789988631


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                 .....+-++.++...||+||.+++..
T Consensus       152 a-----------------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  152 A-----------------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             S-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-----------------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            1                 22456678888889999999988753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.05  E-value=0.00014  Score=56.57  Aligned_cols=104  Identities=22%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCC-CCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v~~~~~l   77 (201)
                      |++||-+|=..- .++.++.. .+.+|+.+|+++..++..++..+..+++ ++.+..|+.. +|. -.++||++++    
T Consensus        45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~T----  118 (243)
T PF01861_consen   45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFT----  118 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEe----
Confidence            578888885543 33333333 4459999999999999999999888875 9999999886 331 1478999997    


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                             ++|     ...+...-++++....||..|...+..++.
T Consensus       119 -------DPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen  119 -------DPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             ---------------SSHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             -------CCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence                   344     467889999999999998777444444443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.05  E-value=0.0002  Score=54.75  Aligned_cols=141  Identities=17%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .++.|+||--+++...+.+.+.. .+++.|+++..++.|.+++...+ .+++++..+|....--.+..+|+++..++   
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM---   94 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM---   94 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC---
Confidence            46899999999999999988765 99999999999999999998877 56788888887542223347898886443   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGK  159 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (201)
                                    +-..+..++++-.+.|+.=-++++.-...+.....++....+....+.-...++..|-..+..++.
T Consensus        95 --------------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~  160 (226)
T COG2384          95 --------------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEILVVEKSS  160 (226)
T ss_pred             --------------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence                          224567888888888864445665543444334444555555544555555666666666666654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.04  E-value=6.1e-05  Score=60.06  Aligned_cols=104  Identities=22%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             CcEEEecCCCChhhHHHH-hc-CCC-eEEEEECCHHHHHHHHHHHh-hcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            2 TSVLELGCGNSRLSEGLY-ND-GIT-AITCIDLSAVAVEKMQERLL-LKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~-~~-~~~-~v~~vD~~~~~~~~~~~~~~-~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      ++|+=+|||+=-+|..+. +. +.. .|+++|+++++.+.+++... ..+ -.++.++++|+.........||+|+....
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            589999999865555444 33 433 89999999999999988766 222 34789999999876544568999996544


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...              ..+...+++.++.+.++||+.+++..
T Consensus       202 Vg~--------------~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  202 VGM--------------DAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -S------------------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             ccc--------------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence            321              23467899999999999999988874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.03  E-value=4.7e-05  Score=57.97  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      |.+||++|=|-|.....+..+.+.+-+.++..+++++.+++.-... ..++.+..+-+++.  .++++.||-|+-.... 
T Consensus       102 ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~-  179 (271)
T KOG1709|consen  102 GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYDTYS-  179 (271)
T ss_pred             CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEeechh-
Confidence            6799999999999888887777768889999999999998764433 24777777777653  3678889998842211 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                    +..++...+.+.+.++|||+|.+-+.
T Consensus       180 --------------e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  180 --------------ELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             --------------hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence                          34588899999999999999998764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.00  E-value=7.3e-05  Score=53.88  Aligned_cols=75  Identities=25%  Similarity=0.351  Sum_probs=55.3

Q ss_pred             CcEEEecCCCChhhHHHHh-----cCCCeEEEEECCHHHHHHHHHHHhhcC--C-CceEEEEcccCCCCCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYN-----DGITAITCIDLSAVAVEKMQERLLLKG--Y-KEVKVLEADMLDLPFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~-----~~~~~v~~vD~~~~~~~~~~~~~~~~~--~-~~i~~~~~d~~~~~~~~~~~D~v~~   73 (201)
                      .+|+|+|||.|+++..++.     ....+|+++|.++..++.+.++....+  . .++.+..++...... ....++++.
T Consensus        27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vg  105 (141)
T PF13679_consen   27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDILVG  105 (141)
T ss_pred             CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeEEEE
Confidence            5799999999999999988     422299999999999999988876655  2 345566655543221 455678886


Q ss_pred             cccccee
Q 028957           74 KATMEVL   80 (201)
Q Consensus        74 ~~~l~~~   80 (201)
                         +|..
T Consensus       106 ---LHaC  109 (141)
T PF13679_consen  106 ---LHAC  109 (141)
T ss_pred             ---eecc
Confidence               7766

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=2e-05  Score=64.03  Aligned_cols=111  Identities=18%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceE----EEEcccCCCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVK----VLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~----~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      +.+|||+|.|+|.....+-...+.  .++.++.++..-+...............    -++.|-..++. ...|++++  
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i--  190 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAI--  190 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhh--
Confidence            468999999999887766555554  7888888887665555443322211111    22223222221 23455554  


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                       ++|.+..+         .....+...++.+..++.|||.+++++...|.
T Consensus       191 -~~~eLl~d---------~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         191 -VLDELLPD---------GNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             -hhhhhccc---------cCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence             46665433         23344566899999999999999999877664

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.89  E-value=0.00015  Score=51.86  Aligned_cols=92  Identities=23%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC--CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHH
Q 028957           25 AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM  101 (201)
Q Consensus        25 ~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  101 (201)
                      +|++.|+.+++++.+++++...+. .++.++..+-..+.  .+.+++|+++.|..  ++  ..+++=..  ...+....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YL--PggDk~i~--T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YL--PGGDKSIT--TKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B---CTS-TTSB----HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cC--CCCCCCCC--cCcHHHHHH
Confidence            589999999999999999998874 46999988877654  33358999996632  23  22332111  122345688


Q ss_pred             HHHHhhcccCCcEEEEEecCC
Q 028957          102 LEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus       102 l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++.+.+.|+|||.+.++.+..
T Consensus        75 l~~al~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE--S
T ss_pred             HHHHHHhhccCCEEEEEEeCC
Confidence            999999999999999887653

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=1.2e-05  Score=68.13  Aligned_cols=58  Identities=17%  Similarity=0.337  Sum_probs=52.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      +.++|+.||||.++..+++... +|+|++++++.++.|+.+...+++.|.+|+++-+++
T Consensus       385 k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  385 KTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             cEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            5789999999999998887654 999999999999999999999999999999996665

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.88  E-value=6.1e-05  Score=57.56  Aligned_cols=91  Identities=25%  Similarity=0.380  Sum_probs=64.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---CCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~~~l~   78 (201)
                      -++|||||=+......  ..+.-.|+.||+++.               .-.+.+.|....|.   +.++||+|.++.++.
T Consensus        53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            3789999864433221  122227999999662               22446667666554   357899999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE-----EEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-----FISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----l~~~~~~  121 (201)
                      ++            ......-+++.++.+.|+|+|.     ++++.+.
T Consensus       116 fV------------P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  116 FV------------PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             eC------------CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            87            2446778999999999999999     8877543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.86  E-value=9.2e-05  Score=58.57  Aligned_cols=108  Identities=14%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             cEEEecCCC--ChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----------CCCCc
Q 028957            3 SVLELGCGN--SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSNDC   67 (201)
Q Consensus         3 ~vLDlG~G~--G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~~   67 (201)
                      ..||||||-  -..+.++++. .+. +|+-+|.++-.+..++..+....-....++++|+.+..           +....
T Consensus        71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r  150 (267)
T PF04672_consen   71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDR  150 (267)
T ss_dssp             EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred             eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence            579999994  3455566655 344 99999999999999998887764223889999987631           11122


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .=.++...++|++            ...++...+++.+...|.||.+|.+...+.
T Consensus       151 PVavll~~vLh~v------------~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  151 PVAVLLVAVLHFV------------PDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             --EEEECT-GGGS-------------CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             CeeeeeeeeeccC------------CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            2256677888887            233567899999999999999999876554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.82  E-value=0.00022  Score=55.83  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc------C--C-CceEEEEcccCCC-CCCCCceeEEE
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------G--Y-KEVKVLEADMLDL-PFSNDCFDVVI   72 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~------~--~-~~i~~~~~d~~~~-~~~~~~~D~v~   72 (201)
                      +|||+.+|+|..+..++.+|+ .|+++|-++.+....++++...      +  + .+++++.+|.... .-...+||+|+
T Consensus        91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY  169 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence            799999999999999999998 6999999999998888887763      2  1 4688899988653 21223688887


Q ss_pred             e
Q 028957           73 E   73 (201)
Q Consensus        73 ~   73 (201)
                      .
T Consensus       170 l  170 (250)
T PRK10742        170 L  170 (250)
T ss_pred             E
Confidence            4

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.00017  Score=53.78  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCC--------CCCCCcee
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL--------PFSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~~~~D   69 (201)
                      +.+|||+||.+|.+++-..+. ++. .|.|+|+-.-        .+   ...+.++++ |+.+.        .++....|
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p---~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd  138 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP---PEGATIIQGNDVTDPETYRKIFEALPNRPVD  138 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC---CCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence            478999999999999988776 354 8999998321        11   123455555 55442        14567889


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +|++.+.-...    +.--.+-....+-...++.-....++|+|.+++-.+...
T Consensus       139 vVlSDMapnaT----Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  139 VVLSDMAPNAT----GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             EEEeccCCCCc----CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            99975432111    000000001112233344444566789999998877653

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.70  E-value=0.00023  Score=53.46  Aligned_cols=112  Identities=13%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHH------HHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAV------EKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~------~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~   72 (201)
                      |++|+|+=.|.|.++..++.. +++ .|++.-..+...      .............|++.+-.+...+. +....|+++
T Consensus        49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~  127 (238)
T COG4798          49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP  127 (238)
T ss_pred             CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence            578999999999999999876 444 677665443211      11111111122234455544444444 446678887


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .....|.+..-       +. +.....++...+++.|||||.+.+.++.
T Consensus       128 ~~~~yhdmh~k-------~i-~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         128 TAQNYHDMHNK-------NI-HPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             cchhhhhhhcc-------cc-CcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            76555544211       11 2345788999999999999999988764

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.70  E-value=0.00062  Score=51.94  Aligned_cols=111  Identities=23%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             CcEEEecCCCChhhHHHHhc-CC--CeEEEEECCHHHHHHHHHHHhhc--------------------------------
Q 028957            2 TSVLELGCGNSRLSEGLYND-GI--TAITCIDLSAVAVEKMQERLLLK--------------------------------   46 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~--~~v~~vD~~~~~~~~~~~~~~~~--------------------------------   46 (201)
                      -++.|-+||+|++..-+.-. +.  ..|++.|+++++++.|.+|+.-.                                
T Consensus        53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~  132 (246)
T PF11599_consen   53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD  132 (246)
T ss_dssp             EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            47899999999988877544 22  28999999999999999886221                                


Q ss_pred             ----------CCCceEEEEcccCCCC-----CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957           47 ----------GYKEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  111 (201)
Q Consensus        47 ----------~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  111 (201)
                                +.......+.|+++-.     -.....|+|+..-....+     ..|.-+ .......+++..+.++| |
T Consensus       133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~-----t~W~g~-~~~~p~~~ml~~l~~vL-p  205 (246)
T PF11599_consen  133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM-----TSWQGE-GSGGPVAQMLNSLAPVL-P  205 (246)
T ss_dssp             HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS-----SSTTS----HHHHHHHHHHHHCCS--
T ss_pred             HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc-----ccccCC-CCCCcHHHHHHHHHhhC-C
Confidence                      1223557788887621     112346999976555444     345431 23445789999999999 5


Q ss_pred             CcEEEEEe
Q 028957          112 DGLFISVS  119 (201)
Q Consensus       112 gG~l~~~~  119 (201)
                      +..++.++
T Consensus       206 ~~sVV~v~  213 (246)
T PF11599_consen  206 ERSVVAVS  213 (246)
T ss_dssp             TT-EEEEE
T ss_pred             CCcEEEEe
Confidence            55544443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.69  E-value=2.4e-05  Score=53.36  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             EEecCCCChhhHHHHhcC---C-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC--CCCCCceeEEEecccc
Q 028957            5 LELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL--PFSNDCFDVVIEKATM   77 (201)
Q Consensus         5 LDlG~G~G~~~~~l~~~~---~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l   77 (201)
                      ||+|+..|..+..+++..   . .+++++|..+. .+...+.++..+ ..++++++++..+.  .++..++|+++..+. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence            689999999888877652   1 27999999885 222222322222 24789999987542  132468899885321 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                     +..+.....++.+.+.|+|||.+++-
T Consensus        79 ---------------H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   79 ---------------HSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -----------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---------------CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                           13366778899999999999998864

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00073  Score=51.09  Aligned_cols=99  Identities=12%  Similarity=0.125  Sum_probs=73.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~   76 (201)
                      |++||=||+.+|+....++.--.. .++++++++.+.+.........  +|+-.+.+|+..-.   .--+..|+|+..- 
T Consensus        77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV-  153 (231)
T COG1889          77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQDV-  153 (231)
T ss_pred             CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEec-
Confidence            578999999999999988876333 8999999999888877766554  58888999987632   1124578877521 


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                      ......+-+..+....|++||.+++.
T Consensus       154 ----------------AQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         154 ----------------AQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             ----------------CCchHHHHHHHHHHHhcccCCeEEEE
Confidence                            12234566788889999999987664

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0021  Score=52.84  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=79.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC---C--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI---T--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~---~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~   66 (201)
                      |.+|||+++.+|+-+..+++...   .  .|++=|.++..+......+.....+++.+...|+...+         ....
T Consensus       156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~  235 (375)
T KOG2198|consen  156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL  235 (375)
T ss_pred             CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence            57899999999999988887632   2  79999999999988888876655556667777765543         1234


Q ss_pred             ceeEEEeccc-cc-eeeecCCCC----CCCCC-ccH-HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           67 CFDVVIEKAT-ME-VLFVNSGDP----WNPQP-ETV-TKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        67 ~~D~v~~~~~-l~-~~~~~~~~~----~~~~~-~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .||-|++.-. -+ ..+-...+=    |.... .+. .-..+++.+..++||+||+++..+++-
T Consensus       236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            6898885211 00 000000010    21111 111 124578999999999999999988764

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.33  E-value=0.001  Score=53.94  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=56.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~   73 (201)
                      |..++|..+|.|+.+..+++..+ .+|+|+|.++.+++.+++++.... .++.+++++..++.     ....++|.|+.
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~   98 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV   98 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence            45799999999999999998732 499999999999999999886543 47888888876542     23356787775

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.33  E-value=0.0012  Score=53.33  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=45.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc-C-CCceEEEEcccC----C-CCCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-G-YKEVKVLEADML----D-LPFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~-~-~~~i~~~~~d~~----~-~~~~~~~~D~v~~   73 (201)
                      -++||+|+|..-+=..+....+. +++|+|+++..++.|++++..+ . ..+|.++...-.    . +..+...||..+|
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence            36899999987543333333223 9999999999999999999888 4 346777654321    1 1123468999999


Q ss_pred             ccccce
Q 028957           74 KATMEV   79 (201)
Q Consensus        74 ~~~l~~   79 (201)
                      +-.|+.
T Consensus       184 NPPFy~  189 (299)
T PF05971_consen  184 NPPFYS  189 (299)
T ss_dssp             -----S
T ss_pred             CCcccc
Confidence            877754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.0033  Score=45.26  Aligned_cols=103  Identities=14%  Similarity=0.213  Sum_probs=74.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+.+|+|+|.|.+....++.+....+++++++-.+.+++-+.-..+ .++..|..-|+.+..+.+-.+-+|+.       
T Consensus        74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg-------  146 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG-------  146 (199)
T ss_pred             CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee-------
Confidence            4689999999999999999885589999999999988877655555 45688999998887765544434332       


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                   ...-+..+-.++..-+..+..++.+-|.-|.
T Consensus       147 -------------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  147 -------------AESVMPDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             -------------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence                         1123344555666677788888877665554

>PHA01634 hypothetical protein

Probab=97.25  E-value=0.0021  Score=45.08  Aligned_cols=47  Identities=9%  Similarity=-0.002  Sum_probs=42.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG   47 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~   47 (201)
                      +++|+|+|++-|.-++.++.+|.+.|++++.++...+..+++.+...
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            57999999999999999999999999999999999999999876653

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=0.00058  Score=52.61  Aligned_cols=105  Identities=23%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             CcEEEecCCCChhhHHHHhcC--------CC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C
Q 028957            2 TSVLELGCGNSRLSEGLYNDG--------IT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F   63 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~--------~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~   63 (201)
                      +++.|+++.+|.+++.+.+..        ..  +++++|+.+-           ..++.+.-+++|+.+..        |
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence            478999999999999887751        11  3999998542           23557888999987642        5


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...+.|+|+|.+.-+..    +.|-++.--..+-+..++.-...+|+|||.++.-.+-
T Consensus       112 ggekAdlVvcDGAPDvT----GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR  165 (294)
T KOG1099|consen  112 GGEKADLVVCDGAPDVT----GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR  165 (294)
T ss_pred             CCCCccEEEeCCCCCcc----ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence            56689999997654432    1110000001112445666677899999999865443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.22  E-value=0.0017  Score=50.78  Aligned_cols=78  Identities=22%  Similarity=0.255  Sum_probs=58.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|+|+|||.=-++..+....+. .++|+|++..+++.....+...+. +..+...|...- .+....|+.+.--+++.
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~-~~~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSD-PPKEPADLALLLKTLPC  183 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-HTTSEESEEEEET-HHH
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeecc-CCCCCcchhhHHHHHHH
Confidence            468999999998888877766544 999999999999999988877763 667777787664 33567899997655555


Q ss_pred             e
Q 028957           80 L   80 (201)
Q Consensus        80 ~   80 (201)
                      +
T Consensus       184 l  184 (251)
T PF07091_consen  184 L  184 (251)
T ss_dssp             H
T ss_pred             H
Confidence            4

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.21  E-value=0.0018  Score=51.78  Aligned_cols=108  Identities=23%  Similarity=0.286  Sum_probs=80.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC--CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL--PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~--~~~~~~~D~v~~   73 (201)
                      ++++|-+|.|.|......+++.. .++..+|++...++..++-++...    -+++.+.-+|...+  ..+.++||+|+.
T Consensus       122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~  201 (337)
T KOG1562|consen  122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT  201 (337)
T ss_pred             CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence            47899999999999999988832 389999999999998888765442    25788888887653  244789999985


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                               ++++|-.+  ....-.+.....+.+.||++|.++...
T Consensus       202 ---------dssdpvgp--a~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  202 ---------DSSDPVGP--ACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             ---------ecCCccch--HHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence                     23344322  112235677888899999999988764

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.17  E-value=0.0013  Score=50.27  Aligned_cols=102  Identities=19%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHH-HHHHHHhhcCCCceEEEEcccCCCC--------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVE-KMQERLLLKGYKEVKVLEADMLDLP--------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~-~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~   66 (201)
                      |+.|+|+|.-.|+-+..+|..    +.. +|+++|++..... .+.+...  ..++|+++++|..+..        ....
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp--~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP--MSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc--ccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            578999999999877776653    233 9999999643321 1111111  1358999999976532        1122


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...+|+...  +              +..+...+.++....++++|+++++.+.
T Consensus       111 ~~vlVilDs--~--------------H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  111 HPVLVILDS--S--------------HTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             SSEEEEESS--------------------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             CceEEEECC--C--------------ccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence            344555321  1              1235567888889999999999987654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.15  E-value=0.0044  Score=49.20  Aligned_cols=102  Identities=21%  Similarity=0.280  Sum_probs=77.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~~~   76 (201)
                      |+.|+-+| -.-..+++++.. .++++..+|+++..++...+.....+++++..+..|+.+ |+|   ..+||+.+.   
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiT---  227 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFIT---  227 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeec---
Confidence            46788888 334444444444 455999999999999999999988899889999999887 333   358999885   


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC---cEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~~~~~  120 (201)
                                   ++|+.....+.++.+-...|+.-   |++.+...
T Consensus       228 -------------DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r  261 (354)
T COG1568         228 -------------DPPETIKALKLFLGRGIATLKGEGCAGYFGITRR  261 (354)
T ss_pred             -------------CchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence                         34467777888999988899877   66665543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.11  E-value=0.0015  Score=52.46  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC--CCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS--NDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~   74 (201)
                      +++|+.||.|.++..+.+.|...+.++|+++.+++..+.+....      .+.+|+.++...  ...+|+++..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~g   69 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGG   69 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeC
Confidence            79999999999999998888878999999999999888876421      466777665422  3568999864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.09  E-value=0.0024  Score=51.68  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc--CCC------CCCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--LDL------PFSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~------~~~~~~~D~   70 (201)
                      |.+||-+|+|+ |..+...|+. |..+|+.+|+.+..++.|++ +..   ..+.......  ..+      ......+|+
T Consensus       170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga---~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~  245 (354)
T KOG0024|consen  170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA---TVTDPSSHKSSPQELAELVEKALGKKQPDV  245 (354)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC---eEEeeccccccHHHHHHHHHhhccccCCCe
Confidence            67999999998 7777777776 66699999999999999998 322   1222211111  110      122345788


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF  130 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~  130 (201)
                      ++.-..+                     ...++.....++++|.+++..+..+...-++.
T Consensus       246 ~~dCsG~---------------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~  284 (354)
T KOG0024|consen  246 TFDCSGA---------------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPII  284 (354)
T ss_pred             EEEccCc---------------------hHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence            8753222                     45666678889999998888877655443333

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.08  E-value=0.0065  Score=47.32  Aligned_cols=103  Identities=14%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+||-||+++|+....+... ++. -|++++.+...-+.+..-...  .+||-.+..|+...    .+|-+.+-  +.+
T Consensus       157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP----~KYRmlVg--mVD  228 (317)
T KOG1596|consen  157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHP----AKYRMLVG--MVD  228 (317)
T ss_pred             CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCc----hheeeeee--eEE
Confidence            578999999999988888776 555 899999987655444432222  25788888888762    23333332  234


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .+|.|-..|        ...+-+.-+....||+||-+++..
T Consensus       229 vIFaDvaqp--------dq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  229 VIFADVAQP--------DQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             EEeccCCCc--------hhhhhhhhhhhhhhccCCeEEEEE
Confidence            444332221        334555667788999999988753

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.04  E-value=0.015  Score=45.79  Aligned_cols=106  Identities=17%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-----C-CceEEEEcccCCC---CCCCCc-eeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----Y-KEVKVLEADMLDL---PFSNDC-FDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-----~-~~i~~~~~d~~~~---~~~~~~-~D~v   71 (201)
                      .+|||+|+|+|..+..++.....+|...|... .+...+.+...+.     . ..+.+...++...   .+.... +|++
T Consensus        88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   88 INVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             eeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            46999999999888877776555899998743 3433333322111     1 1445555554432   122233 8999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +++-++..               .+....++..+...|..+|.+++...-+.
T Consensus       167 lasDvvy~---------------~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  167 LASDVVYE---------------EESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEeeeeec---------------CCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            98655422               13345566667777778886666554443

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.98  E-value=0.0066  Score=50.10  Aligned_cols=122  Identities=15%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             cEEEecCCCChhhHHHHhc------------C----CC-eEEEEECCHHHHHHHHHHHhhc-----CCCc--eEEEEccc
Q 028957            3 SVLELGCGNSRLSEGLYND------------G----IT-AITCIDLSAVAVEKMQERLLLK-----GYKE--VKVLEADM   58 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~------------~----~~-~v~~vD~~~~~~~~~~~~~~~~-----~~~~--i~~~~~d~   58 (201)
                      +|+|+||.+|..+..+...            .    +. .|+.-|+-..--...-+.+...     ..++  +.-+.+..
T Consensus        19 ~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgSF   98 (334)
T PF03492_consen   19 RIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGSF   98 (334)
T ss_dssp             EEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-T
T ss_pred             EEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCchh
Confidence            7999999999988777542            1    12 7888886432221111111111     0123  33456666


Q ss_pred             CCCCCCCCceeEEEeccccceeeec-------CCCCCCCC------Ccc-----------HHHHHHHHHHHhhcccCCcE
Q 028957           59 LDLPFSNDCFDVVIEKATMEVLFVN-------SGDPWNPQ------PET-----------VTKVMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        59 ~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~~~~~~------~~~-----------~~~~~~~l~~~~~~L~~gG~  114 (201)
                      ..--+|.++.|+++++.++|++---       .+.+|++.      ...           ..+...+|+.=.+-|+|||+
T Consensus        99 y~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~  178 (334)
T PF03492_consen   99 YGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGR  178 (334)
T ss_dssp             TS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcE
Confidence            6545889999999999999988221       11234432      001           13345666666778999999


Q ss_pred             EEEEecCCcc
Q 028957          115 FISVSFGQPH  124 (201)
Q Consensus       115 l~~~~~~~~~  124 (201)
                      +++.....+.
T Consensus       179 mvl~~~gr~~  188 (334)
T PF03492_consen  179 MVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEE-ST
T ss_pred             EEEEEeeccc
Confidence            9988766554

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.90  E-value=0.0032  Score=49.02  Aligned_cols=71  Identities=25%  Similarity=0.338  Sum_probs=46.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH---hhcC------CCceEEEEcccCC-CCCCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLKG------YKEVKVLEADMLD-LPFSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~---~~~~------~~~i~~~~~d~~~-~~~~~~~~D~v   71 (201)
                      .+|||..+|-|..+..++..|+ +|+++|-++-+....++-+   ....      ..+++++.+|..+ +..+..+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            3899999999999999998887 8999999987655444432   2211      1478999999887 44556899999


Q ss_pred             Ee
Q 028957           72 IE   73 (201)
Q Consensus        72 ~~   73 (201)
                      ..
T Consensus       156 Y~  157 (234)
T PF04445_consen  156 YF  157 (234)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.90  E-value=0.0012  Score=56.36  Aligned_cols=122  Identities=14%  Similarity=0.239  Sum_probs=72.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC-CCCCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML-DLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~v~~~~~l~   78 (201)
                      ..|+|+.+|.|+++..|.+...=  +|+-+ ..+..+....++    |   +--+..|+- .++.-+.+||++-+..+|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G---LIG~yhDWCE~fsTYPRTYDLlHA~~lfs  438 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G---LIGVYHDWCEAFSTYPRTYDLLHADGLFS  438 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c---cchhccchhhccCCCCcchhheehhhhhh
Confidence            36899999999999998766320  22222 122222222221    1   111333433 2444458999999887776


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc-cCCCCceEEEEEEeC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF-NAPQFTWSVEWITFG  145 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  145 (201)
                      ..            .+.-++..++-++-|+|+|+|.+++.+...  ....+. ......|........
T Consensus       439 ~~------------~~rC~~~~illEmDRILRP~G~~iiRD~~~--vl~~v~~i~~~lrW~~~~~d~e  492 (506)
T PF03141_consen  439 LY------------KDRCEMEDILLEMDRILRPGGWVIIRDTVD--VLEKVKKIAKSLRWEVRIHDTE  492 (506)
T ss_pred             hh------------cccccHHHHHHHhHhhcCCCceEEEeccHH--HHHHHHHHHHhCcceEEEEecC
Confidence            54            233457899999999999999999876432  111111 134567776665443

; GO: 0008168 methyltransferase activity

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.89  E-value=0.003  Score=52.44  Aligned_cols=99  Identities=23%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccC-C-CCCCC-CceeEEEecc
Q 028957            2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DML-D-LPFSN-DCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~-~-~~~~~-~~~D~v~~~~   75 (201)
                      .+|+-+|||+ |.++..+++. |..+|+++|.+++.++.|++.....   .+..... +.. . ..... ..+|+++-..
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence            3799999998 8887777776 5569999999999999998753221   1111111 110 0 01112 3689998532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      .                     ....+..+.+.++++|++.+.......
T Consensus       247 G---------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         247 G---------------------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             C---------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            2                     245788899999999999987665433

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.86  E-value=0.006  Score=51.13  Aligned_cols=98  Identities=24%  Similarity=0.349  Sum_probs=72.4

Q ss_pred             cEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            3 SVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      +|||.-+|+|-=++-.+..  +..+|++-|+++++++.+++|++.+++..  +.+...|+..+- .....||+|=.    
T Consensus        52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl----  127 (377)
T PF02005_consen   52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL----  127 (377)
T ss_dssp             EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----
T ss_pred             eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe----
Confidence            7999999999888877776  33499999999999999999999888654  788888987642 24578999863    


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                              ||+       -....++....+.++.||.+.+..
T Consensus       128 --------DPf-------GSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 --------DPF-------GSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             ----------S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence                    222       234678899999999999988764

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.0043  Score=50.02  Aligned_cols=101  Identities=19%  Similarity=0.334  Sum_probs=63.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH---hhcC-------------------------CCceE-
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLKG-------------------------YKEVK-   52 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~---~~~~-------------------------~~~i~-   52 (201)
                      -+||--|||.|.++..++..|+ .+-|-++|--|+-...=.+   ...+                         +|.+. 
T Consensus       152 i~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  152 IRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             ceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            3689999999999999999988 6777787776654332222   1000                         00000 


Q ss_pred             -----------EEEcccCCC---CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           53 -----------VLEADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        53 -----------~~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                 .-.+|....   +-..+.||+|+..+.++.               .......++.+..+|+|||..+-+
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---------------a~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---------------AHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---------------hHHHHHHHHHHHHhccCCcEEEec
Confidence                       111232211   112346999987655543               367788899999999999997754

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.70  E-value=0.0035  Score=52.74  Aligned_cols=53  Identities=21%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEE
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLE   55 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~   55 (201)
                      .|||+|+|||.++.++++.|...|++++.-..|.+.|++....++ .++|+++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn  122 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN  122 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence            589999999999999999998899999999999999999888777 45566654

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.64  E-value=0.00094  Score=45.55  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +||+|+|-.+--++..+         .+++.+..+++++++.|+|||.+++.
T Consensus         1 ~yDvilclSVtkWIHLn---------~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLN---------WGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEec---------CcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            48999997777666555         34577999999999999999999864

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK11524 putative methyltransferase; Provisional

Probab=96.62  E-value=0.0049  Score=49.66  Aligned_cols=44  Identities=16%  Similarity=0.073  Sum_probs=39.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL   45 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~   45 (201)
                      |+.|||..||+|+.+....+.+. +++|+|++++.++.+++++..
T Consensus       209 GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        209 GDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            67899999999999998888877 999999999999999999753

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.58  E-value=0.025  Score=47.39  Aligned_cols=122  Identities=14%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             cEEEecCCCChhhHHHHhc---------------CCC-eEEEEECCHHHHHHHHHHHhh--------------cCCCc--
Q 028957            3 SVLELGCGNSRLSEGLYND---------------GIT-AITCIDLSAVAVEKMQERLLL--------------KGYKE--   50 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~---------------~~~-~v~~vD~~~~~~~~~~~~~~~--------------~~~~~--   50 (201)
                      +|+|+|||+|..+..+...               .+. .|+.-|+-..--...-+.+..              .+.+.  
T Consensus        66 ~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f  145 (386)
T PLN02668         66 TAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYF  145 (386)
T ss_pred             eEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceE
Confidence            6999999999877655321               122 677777643222222222211              01001  


Q ss_pred             eEEEEcccCCCCCCCCceeEEEeccccceeeecCC-------CCCCCC------C----------ccHHHHHHHHHHHhh
Q 028957           51 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG-------DPWNPQ------P----------ETVTKVMAMLEGVHR  107 (201)
Q Consensus        51 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~-------~~~~~~------~----------~~~~~~~~~l~~~~~  107 (201)
                      +.-+.+....--+|.++.++++++.++|++---+.       ..|++.      .          .-..|...+|+.-.+
T Consensus       146 ~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~  225 (386)
T PLN02668        146 AAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQ  225 (386)
T ss_pred             EEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12233444333478899999999999987721110       122221      0          001234456666677


Q ss_pred             cccCCcEEEEEecCCcc
Q 028957          108 VLKPDGLFISVSFGQPH  124 (201)
Q Consensus       108 ~L~~gG~l~~~~~~~~~  124 (201)
                      -|.|||++++....++.
T Consensus       226 ELvpGG~mvl~~~Gr~~  242 (386)
T PLN02668        226 EMKRGGAMFLVCLGRTS  242 (386)
T ss_pred             HhccCcEEEEEEecCCC
Confidence            89999999988776643

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.55  E-value=0.034  Score=48.33  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             CcEEEecCCCChhhHHHHhcC-----CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC-C----CCCceeE
Q 028957            2 TSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP-F----SNDCFDV   70 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~----~~~~~D~   70 (201)
                      .+|+|-.||+|++.....+..     ...++|.|.++.....++.++--++.. .+....+|-..-+ .    ..+.||.
T Consensus       188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~  267 (489)
T COG0286         188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDF  267 (489)
T ss_pred             CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeE
Confidence            479999999999888776652     127999999999999999998877754 3455555544333 2    3367999


Q ss_pred             EEeccccc-eeeecCC--CC-------CCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           71 VIEKATME-VLFVNSG--DP-------WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        71 v~~~~~l~-~~~~~~~--~~-------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      |+++-.+. .-+....  ..       +...+........+++.+...|+|||+.-++.+.
T Consensus       268 viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         268 VIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             EEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            99876553 1111000  00       1101111122378999999999999876555443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.48  E-value=0.0015  Score=52.19  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             CcEEEecCCCChhhH-HHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~-~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~   73 (201)
                      ..|.|+=+|-|+++. .+...|.+.|+++|.++..++..++++..++ ..+...+.+|-+. +.+....|-|..
T Consensus       196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL  268 (351)
T KOG1227|consen  196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL  268 (351)
T ss_pred             chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee
Confidence            468899999999999 6677788899999999999999999988775 2334556666554 334566777763

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.32  E-value=0.017  Score=47.49  Aligned_cols=95  Identities=20%  Similarity=0.298  Sum_probs=57.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++||-.|||. |..+..+++. |..+|+++|.+++.++.+++.    +...+ .....+........+.+|+|+.... 
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~G-  244 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-  244 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECCC-
Confidence            46788888865 6666667666 554799999999888877652    22111 1111111111111235888884211 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                          ....++...+.|+++|+++....
T Consensus       245 --------------------~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        245 --------------------HPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             --------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence                                12456777888999999988754

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.31  E-value=0.012  Score=48.24  Aligned_cols=72  Identities=22%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHH-------HHHHHHhhcCC-C-ceEEEEcccCCCCC-CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE-------KMQERLLLKGY-K-EVKVLEADMLDLPF-SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~-------~~~~~~~~~~~-~-~i~~~~~d~~~~~~-~~~~~D~   70 (201)
                      |+.|+|--.|||.+....+..|. .|+|.|++-.++.       ..+.|++..+. + -+.++.+|...-+. ....||+
T Consensus       209 GdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa  287 (421)
T KOG2671|consen  209 GDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA  287 (421)
T ss_pred             CCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence            67899999999999998888887 9999999988887       34456665552 2 25677888776442 2457999


Q ss_pred             EEe
Q 028957           71 VIE   73 (201)
Q Consensus        71 v~~   73 (201)
                      |+|
T Consensus       288 Ivc  290 (421)
T KOG2671|consen  288 IVC  290 (421)
T ss_pred             EEe
Confidence            997

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.27  E-value=0.0013  Score=47.61  Aligned_cols=58  Identities=21%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             eEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           51 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        51 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +.+++.......|.+++.|+|.+..++.++             ..++...++++++++|||||++-+..+.
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHl-------------t~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHL-------------TYDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            344443334456889999999998888877             3466789999999999999999876543

>PRK13699 putative methylase; Provisional

Probab=96.19  E-value=0.014  Score=45.47  Aligned_cols=45  Identities=20%  Similarity=0.102  Sum_probs=39.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      |+.|||..||+|+.+....+.+. +++|+|++++..+.+.+++...
T Consensus       164 g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        164 NAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            57899999999999998888877 8999999999999999887653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.16  E-value=0.01  Score=48.26  Aligned_cols=63  Identities=21%  Similarity=0.370  Sum_probs=51.8

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEe
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE   73 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~   73 (201)
                      +++|+.||.|.++.-+.+.|...+.++|+++.+.+.-+.|+.       ....+|+..+.   ++. .+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEe
Confidence            799999999999999999998899999999999998888864       77888888764   333 5899885

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.11  E-value=0.042  Score=45.28  Aligned_cols=92  Identities=18%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             CCcEEEecCC-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-cCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|+-.|+| -|.++.++++. + .+|+++|.+++-.+.+++.-.      -.++... ......-.+.+|+++.... 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~tv~-  238 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIIDTVG-  238 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence            4677778887 36788888884 6 499999999999888876422      1333322 1111111123899986321 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                           ...+....+.|+++|+++++...
T Consensus       239 ---------------------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         239 ---------------------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ---------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence                                 45777888999999999988665

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.09  E-value=0.0065  Score=44.39  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=64.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCC-CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLD-LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~~D~v~~~~~l~   78 (201)
                      |++.+-+|+..=-.=...++.|..+++.+|.++--++.-   +    .++++ +...|... ...-.++||.+.|..+++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~----~dr~ssi~p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---F----RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---c----ccccccccHHHHHHHHHHhhccchhhheechhc
Confidence            567888887755555555666777899999765211110   0    01111 11222111 111246799999877775


Q ss_pred             ee-eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +. +.-.++|..+     ..-.+.+.++.++||+||.+++..+-.
T Consensus        75 h~GLGRYGDPidp-----~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   75 HFGLGRYGDPIDP-----IGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             cccccccCCCCCc-----cccHHHHHHHHHhhccCCeEEEEeecC
Confidence            44 4444555432     233577889999999999999876543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.04  E-value=0.051  Score=47.33  Aligned_cols=96  Identities=19%  Similarity=0.332  Sum_probs=61.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-----------C--C---
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-----------L--P---   62 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-----------~--~---   62 (201)
                      |++|+-+|||. |..+...++. |. .|+++|.+++.++.+++.    +.   .++..|..+           +  .   
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA---~~v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA---EFLELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEEeccccccccccchhhhcchhHHH
Confidence            57899999998 7777777766 65 899999999999888762    22   211111100           0  0   


Q ss_pred             -----CC--CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHH-HHHHhhcccCCcEEEEEec
Q 028957           63 -----FS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM-LEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        63 -----~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~gG~l~~~~~  120 (201)
                           +.  .+.+|+|+......               . .....+ .++..+.+||||.++.+..
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~p---------------g-~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIP---------------G-KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCC---------------c-ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                 01  13589999643320               0 111234 5889999999999887765

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.99  E-value=0.013  Score=50.40  Aligned_cols=102  Identities=22%  Similarity=0.357  Sum_probs=73.1

Q ss_pred             cEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            3 SVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      .|+-+|+|.|-+.....+.    ..+ ++++++-++.++...+.+--..--.++.++..|++..+.+..+.|++++-   
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE---  446 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE---  446 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH---
Confidence            5788999999888776554    223 89999999998877765322212357999999999987656789998852   


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                        ++.+|++        -+-....|..+.+.|||+|+.+=
T Consensus       447 --LLGSFGD--------NELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  447 --LLGSFGD--------NELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             --hhccccC--------ccCCHHHHHHHHhhcCCCceEcc
Confidence              1222222        13346788999999999988763

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.95  E-value=0.02  Score=46.56  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-CCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~D~v~~   73 (201)
                      ..++|..-|.|+.+..+++..+ .+++|+|.++.+++.+++++... .+++.++..+..++.     . ...++|-|+.
T Consensus        22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~   99 (310)
T PF01795_consen   22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGILF   99 (310)
T ss_dssp             -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred             ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence            5689999999999999998744 49999999999999999887654 357899998876642     3 3457787774

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.032  Score=46.08  Aligned_cols=100  Identities=21%  Similarity=0.256  Sum_probs=73.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~   78 (201)
                      +.+|+|--+|+|.=++-.+..... +++.-|+++.+++.+++|+..+...+...+..|+..+-. ....||+|=.     
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-----  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-----  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence            357999999999888888776444 899999999999999999988743455666678765422 1367888752     


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                             ||+.       ....++....+.++.+|.+.+..
T Consensus       128 -------DPFG-------SPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         128 -------DPFG-------SPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             -------CCCC-------CCchHHHHHHHHhhcCCEEEEEe
Confidence                   3332       22457777788888899988653

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.17  Score=39.88  Aligned_cols=105  Identities=24%  Similarity=0.262  Sum_probs=68.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCC-C-CCCCCceeEE-
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLD-L-PFSNDCFDVV-   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~-~-~~~~~~~D~v-   71 (201)
                      +.+.+|+|+|+..-+..+...    +.. .++.+|++...++...+.+... .--.+.-+++|... + ..+...--+. 
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~  158 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV  158 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence            467899999999888877654    333 8999999999987665544322 11134556777543 1 1222222222 


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +....+..+             .+.+...++..+...|+||-++++-
T Consensus       159 flGStlGN~-------------tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         159 FLGSTLGNL-------------TPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EecccccCC-------------ChHHHHHHHHHHHhcCCCcceEEEe
Confidence            222333332             4578899999999999999998763

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.33  E-value=0.096  Score=42.49  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++||-+|||. |.++..+++. |...++++|.+++.++.+...    .     ++  |....  ....+|+|+-...  
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~~~g~Dvvid~~G--  209 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--PRRDYRAIYDASG--  209 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--cCCCCCEEEECCC--
Confidence            45788888876 7777777765 554677889888776655431    1     01  11110  1245898885321  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                         -...++.+.+.|+++|++++....
T Consensus       210 -------------------~~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       210 -------------------DPSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             -------------------CHHHHHHHHHhhhcCcEEEEEeec
Confidence                               124567788899999999877543

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=95.24  E-value=0.044  Score=46.60  Aligned_cols=110  Identities=12%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             CcEEEecCCCChhhHHH--HhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-c-C--CCCCC-CCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGL--YNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-M-L--DLPFS-NDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l--~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~-~--~~~~~-~~~~D~v~~   73 (201)
                      +.++|+|.|.|.-...+  +... ...+..||.+..|.......+.... ..-..+... . .  .++.. .+.||+|++
T Consensus       202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~  280 (491)
T KOG2539|consen  202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGYDLVIC  280 (491)
T ss_pred             HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccceeeEEe
Confidence            34567777765444333  3333 2389999999999999988876511 011111111 1 1  12332 356999999


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHH-hhcccCCcEEEEEecCCcc
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGV-HRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~gG~l~~~~~~~~~  124 (201)
                      ...++.+            .+........++. ....++|+.+++++...+.
T Consensus       281 ah~l~~~------------~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~  320 (491)
T KOG2539|consen  281 AHKLHEL------------GSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM  320 (491)
T ss_pred             eeeeecc------------CCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence            8877765            1223334444444 4566889998888766543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.10  E-value=0.033  Score=44.02  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CcEEEecCCCChhhHHHHhc---C-C-----CeEEEEECCHHHHHHHHHHHhh
Q 028957            2 TSVLELGCGNSRLSEGLYND---G-I-----TAITCIDLSAVAVEKMQERLLL   45 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~---~-~-----~~v~~vD~~~~~~~~~~~~~~~   45 (201)
                      -+|+|+|+|+|.++..+++.   . +     .+++.+|.|+.+.+..++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            37999999999999998774   1 1     2899999999998888888765

; PDB: 4F3N_A 1ZKD_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.04  E-value=0.13  Score=41.57  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      ...+|..-|.|+.+..+++..+.  +++++|-++.+++.+++.+...+ +++.+++.+...+
T Consensus        25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l   85 (314)
T COG0275          25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL   85 (314)
T ss_pred             cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence            46789999999999999998653  79999999999999999987655 5788888876543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.99  E-value=0.18  Score=41.67  Aligned_cols=94  Identities=20%  Similarity=0.252  Sum_probs=55.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEEC---CHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDL---SAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~---~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      |.+||-.|+|. |.++..+++. +. +|++++.   ++...+.+++    .+...+.....+.... ...+.+|+|+-..
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~-~~~~~~d~vid~~  246 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEV-KLVGEFDLIIEAT  246 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhh-hhcCCCCEEEECc
Confidence            46788888875 6677777665 55 8999986   5666665543    2322111111111110 1124588888532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .                     ....+....+.|+++|++++....
T Consensus       247 g---------------------~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         247 G---------------------VPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             C---------------------CHHHHHHHHHHccCCcEEEEEecC
Confidence            1                     123677788999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=0.068  Score=44.17  Aligned_cols=45  Identities=18%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             CcEEEecCCCChhhHHHHhc----C-----CCeEEEEECCHHHHHHHHHHHhhc
Q 028957            2 TSVLELGCGNSRLSEGLYND----G-----ITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~-----~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      ..++|+|+|+|.++..+++.    .     ..++..+++|++..+.-+++++..
T Consensus        79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            36999999999999998764    1     229999999999998888887654

>PRK13699 putative methylase; Provisional

Probab=94.87  E-value=0.053  Score=42.27  Aligned_cols=56  Identities=21%  Similarity=0.401  Sum_probs=38.3

Q ss_pred             EEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCC-----------CccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           52 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQ-----------PETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        52 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +++.+|+.+.  .++++++|+|+.           ++||+..           ....+-....+.+++++|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiT-----------DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILT-----------DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEe-----------CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5677887653  477899999996           3455310           011123468899999999999988753

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.84  E-value=0.022  Score=38.75  Aligned_cols=30  Identities=33%  Similarity=0.452  Sum_probs=26.1

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCH
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSA   33 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~   33 (201)
                      ...|+|||+|.+...+.+.|+ .=.|+|...
T Consensus        61 ~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   61 GFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             ceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            578999999999999999988 788999744

; GO: 0008168 methyltransferase activity

>PRK11524 putative methyltransferase; Provisional

Probab=94.78  E-value=0.061  Score=43.33  Aligned_cols=69  Identities=16%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             ceEEEEcccCCC--CCCCCceeEEEeccccce--eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           50 EVKVLEADMLDL--PFSNDCFDVVIEKATMEV--LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        50 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +..++++|+.+.  .++++++|+|+++-.+..  -+.+..+.|. ..+...-...++.++.++|||||.+++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            457888888763  366789999998433211  0000000110 00111224678999999999999998753

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.71  E-value=0.028  Score=44.84  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE   37 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~   37 (201)
                      |++|||+|||+|.........+...+...|.+.+.++
T Consensus       117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            6899999999999999888877558999999988773

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.68  E-value=0.056  Score=44.28  Aligned_cols=65  Identities=15%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             EEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957            4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK   74 (201)
Q Consensus         4 vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~   74 (201)
                      |+|+.||.|.++.-+.+.|...+.++|+++.+++..+.++..      .++.+|+.++.. ....+|+++..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhCCCcCEEEec
Confidence            689999999999999888886788899999999988887642      334567666531 12357888854

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.63  E-value=0.26  Score=40.56  Aligned_cols=92  Identities=11%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++||-+|||. |.++..+++.  +..+|+++|.+++.++.+++ +   +  ....+ .+..    ....+|+|+-...-
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--~~~~~-~~~~----~~~g~d~viD~~G~  232 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--ETYLI-DDIP----EDLAVDHAFECVGG  232 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--ceeeh-hhhh----hccCCcEEEECCCC
Confidence            46899999876 5566666653  34489999999888777754 1   1  11111 1111    11247888842110


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                        ......+....+.|+++|++++....
T Consensus       233 ------------------~~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         233 ------------------RGSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             ------------------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence                              00235677888999999999877643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PTZ00357 methyltransferase; Provisional

Probab=94.44  E-value=0.2  Score=45.06  Aligned_cols=96  Identities=22%  Similarity=0.273  Sum_probs=59.0

Q ss_pred             cEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHH---hhcC------CCceEEEEcccCCCCCCC---
Q 028957            3 SVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERL---LLKG------YKEVKVLEADMLDLPFSN---   65 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~---~~~~------~~~i~~~~~d~~~~~~~~---   65 (201)
                      .|+-+|+|-|-+....++.    +.+ +++++|-++........+.   ..+.      -..|+++..|++....+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            4899999999887776654    444 9999999966443333332   2221      124899999999864321   


Q ss_pred             --------CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957           66 --------DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  111 (201)
Q Consensus        66 --------~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  111 (201)
                              +++|++|+=     ++.+|++        -+-....|..+.+.||+
T Consensus       783 s~~~P~~~gKaDIVVSE-----LLGSFGD--------NELSPECLDGaQrfLKd  823 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSE-----LLGSLGD--------NELSPECLEAFHAQLED  823 (1072)
T ss_pred             cccccccccccceehHh-----hhccccc--------ccCCHHHHHHHHHhhhh
Confidence                    368999862     1222222        12334566666666665

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.24  E-value=0.13  Score=42.44  Aligned_cols=68  Identities=21%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      .+++|+.||.|.+..-+...|+.-+.++|+++..++.-+.+...     ..++..|.....   +....+|+++..
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligG   74 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGG   74 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeC
Confidence            47999999999999999999988999999999999988887643     345666665432   111167888853

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=94.14  E-value=0.11  Score=42.27  Aligned_cols=109  Identities=20%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             CcEEEecCCCChhhHHHHhcC--------------------CC-eEEEEECC--HHHHHHHHHHHhhc------------
Q 028957            2 TSVLELGCGNSRLSEGLYNDG--------------------IT-AITCIDLS--AVAVEKMQERLLLK------------   46 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~--------------------~~-~v~~vD~~--~~~~~~~~~~~~~~------------   46 (201)
                      .+||-||.|.|.-...++...                    .. .++++|+.  ..++......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            589999999986555554321                    11 79999985  55666666654433            


Q ss_pred             -----CCCceEEEEcccCCCCCC-------CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957           47 -----GYKEVKVLEADMLDLPFS-------NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        47 -----~~~~i~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  114 (201)
                           ..-++.|.+.|+..+..+       ....++|...+.++.+|..          +.....+++.++-..++||..
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~----------s~~kTt~FLl~Lt~~~~~Gsl  237 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST----------SISKTTKFLLRLTDICPPGSL  237 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHhhcCCCcE
Confidence                 112478899998876421       1246888777777777643          456778999999999999988


Q ss_pred             EEEEec
Q 028957          115 FISVSF  120 (201)
Q Consensus       115 l~~~~~  120 (201)
                      +++++.
T Consensus       238 LLVvDS  243 (315)
T PF11312_consen  238 LLVVDS  243 (315)
T ss_pred             EEEEcC
Confidence            887764

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.07  E-value=0.29  Score=37.05  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=64.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCcee
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D   69 (201)
                      ++.|+|.|.-.|+-+...|+.    |-. +|+++|++-.....+...     .++|.+++++-.+..      ...+.+-
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y~  144 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEYP  144 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCCC
Confidence            568999999988877776654    422 999999986554333221     468999999865532      1112222


Q ss_pred             EE-EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VV-IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      -| +|-..-               ++.+...+-++.+.++|..|-++++.+..
T Consensus       145 kIfvilDsd---------------Hs~~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         145 KIFVILDSD---------------HSMEHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             cEEEEecCC---------------chHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence            33 331122               23466677778888899998888876544

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.98  E-value=0.52  Score=34.90  Aligned_cols=113  Identities=20%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             ecCCCChhhHHHHhc-C-CCeEEEEECCHH--HHHH---HHHHHhhcCCCceEE-EEcccCCCC----CCCCceeEEEec
Q 028957            7 LGCGNSRLSEGLYND-G-ITAITCIDLSAV--AVEK---MQERLLLKGYKEVKV-LEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         7 lG~G~G~~~~~l~~~-~-~~~v~~vD~~~~--~~~~---~~~~~~~~~~~~i~~-~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      +|=|.-.++..+++. + ...++++-++..  ..+.   +..++.......+.+ ...|+.++.    ...+.||.|+.+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            566666777777776 3 337777766533  2221   223333322123333 556666654    246789999965


Q ss_pred             cccceeeecCCCCCC--CCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWN--PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +.--.-    +.-..  ....+..-+..+++.+.++|+++|.+.+.-...+
T Consensus        83 FPH~G~----~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~  129 (166)
T PF10354_consen   83 FPHVGG----GSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ  129 (166)
T ss_pred             CCCCCC----CccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            432110    00000  0001223467889999999999999887755543

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.98  E-value=0.21  Score=43.18  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=43.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      -+++|+.||.|+++.-+-..|...|.++|+++.+.+.-+.|+...  +....+..|+.++
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i  146 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDI  146 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhC
Confidence            379999999999999998888878899999999888887775211  1223344555543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.95  E-value=0.29  Score=40.99  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-cCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~-~-~-~~~~~~D~v~~~   74 (201)
                      +.+||..|||. |..+..+++... .++++++.+++..+.+++..   +...+.....+ ... + . .....+|+|+..
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            46799999987 888888887743 36999999999888887642   11111211111 111 1 1 122368988853


Q ss_pred             cccceeeecCCCCCCCC----CccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQ----PETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..-+..    ..+|-.-    +....+....+..+.+.++++|+++....
T Consensus       262 vg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         262 VGMEAH----GSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCccc----ccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            211000    0000000    00001224577888899999999987753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.94  E-value=0.2  Score=39.94  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=55.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEE-cc-cCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLE-AD-MLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~-~d-~~~~~~~~~~~D~v~~~~   75 (201)
                      +++||-.|+|+ |..+..+++. |...|+++|.+++..+.+++.    +...+ .... .+ +..+ .....+|+++-..
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~  195 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDVALEFS  195 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCEEEECC
Confidence            46788888865 6666666665 554599999988877776652    22111 0000 00 0011 1123588888421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                     ....++...+.|+++|+++....
T Consensus       196 G---------------------~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       196 G---------------------ATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             C---------------------ChHHHHHHHHHhcCCCEEEEecc
Confidence            1                     12466777889999999987764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.77  E-value=0.82  Score=37.02  Aligned_cols=94  Identities=22%  Similarity=0.294  Sum_probs=56.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCC-C-CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD-L-PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~D~v~~~~   75 (201)
                      +.+||..|+|. |..+..+++. |. +|++++.+++..+.+++.    +...+-.... +... + ....+.+|+++...
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~  240 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV  240 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence            35778877764 6777777765 54 799999998887777442    2211111000 0000 0 12245689888421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                     ....++++.+.|+++|+++....
T Consensus       241 g---------------------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         241 G---------------------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             C---------------------CHHHHHHHHHHhhcCCEEEEECC
Confidence            1                     13467778899999999987654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.68  E-value=0.057  Score=46.24  Aligned_cols=99  Identities=23%  Similarity=0.276  Sum_probs=73.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC----CCCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL----PFSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~----~~~~~~~D~v~~~   74 (201)
                      -+|||--|++|.-++..+..-+  ..|++-|.++..++..+++...++.. .+.....|+..+    +-....||+|=. 
T Consensus       111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL-  189 (525)
T KOG1253|consen  111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL-  189 (525)
T ss_pred             chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec-
Confidence            4688888999998888887733  39999999999999999998887632 355667776543    122467898863 


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                 ||+.       ....+|....+.++.||.+.+..
T Consensus       190 -----------DPyG-------s~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  190 -----------DPYG-------SPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             -----------CCCC-------CccHHHHHHHHHhhcCCEEEEEe
Confidence                       3332       23468888888899999988753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.59  E-value=1.2  Score=30.35  Aligned_cols=88  Identities=22%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             CCCChhhHHHHhc---CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEeccccceee
Q 028957            9 CGNSRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         9 ~G~G~~~~~l~~~---~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~   81 (201)
                      ||.|.++..+++.   ....|+.+|.+++.++.+.+.       .+.++.+|..+..    ..-.+++.+++...     
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD-----   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence            5666777777654   223899999999988877653       4678999988632    33457788876321     


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   .......+....+.+.|...++.....
T Consensus        72 -------------~d~~n~~~~~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   72 -------------DDEENLLIALLARELNPDIRIIARVND   98 (116)
T ss_dssp             -------------SHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred             -------------CHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence                         123333444555667788887766543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.38  E-value=0.18  Score=41.68  Aligned_cols=95  Identities=20%  Similarity=0.211  Sum_probs=55.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~-~-~~~~~~D~v~~~   74 (201)
                      |.+||-.|||. |..+..+++. |..+|+++|.+++..+.+++.    +.+. +.....+... + . .....+|+|+-.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~  252 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRALTGGFGADVVIDA  252 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence            46788888765 6666666665 443699999999888777542    2211 1111111110 0 0 122358888842


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                 .    ...+....+.++++|++++...
T Consensus       253 ~g-----------------~----~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       253 VG-----------------R----PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CC-----------------C----HHHHHHHHHHhccCCEEEEECC
Confidence            11                 0    2355667788999999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.31  E-value=0.22  Score=43.47  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~   41 (201)
                      +.+|+-+|+|. |..+..++.. |. .|+++|.+++.++.+++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            46899999987 5666656555 55 79999999998777765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.23  E-value=0.23  Score=41.77  Aligned_cols=64  Identities=13%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CCceEEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           48 YKEVKVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        48 ~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +++++++++++.+.  ..+++++|.++....++++             ..+...+.++++.+.++|||++++-+...+.
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-------------~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-------------DPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-------------CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            47899999998763  2567899999987766665             3478899999999999999999988776543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.92  E-value=0.29  Score=38.20  Aligned_cols=78  Identities=8%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-C-CceEEEEcccCC--C---CCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-Y-KEVKVLEADMLD--L---PFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~-~~i~~~~~d~~~--~---~~~~~~~D~v~~   73 (201)
                      .++||+|.|.--+=-.+--+.+. ..+|.|+++..+..|+..+..+. + ..|+.....-.+  +   --..+.||+++|
T Consensus        80 i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC  159 (292)
T COG3129          80 IRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC  159 (292)
T ss_pred             eEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence            46889987753222112222233 89999999999999999887762 2 224443322111  1   123578999999


Q ss_pred             ccccce
Q 028957           74 KATMEV   79 (201)
Q Consensus        74 ~~~l~~   79 (201)
                      +-.||.
T Consensus       160 NPPFh~  165 (292)
T COG3129         160 NPPFHD  165 (292)
T ss_pred             CCCcch
Confidence            988874

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=92.89  E-value=0.097  Score=44.13  Aligned_cols=59  Identities=14%  Similarity=0.199  Sum_probs=49.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-C-ceEEEEcccCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-K-EVKVLEADMLD   60 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~-~i~~~~~d~~~   60 (201)
                      |..|.|+.||-|-++..++..++ .|++-|+++++++..+.+++-+.+ + ++..+.+|+..
T Consensus       250 gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  250 GEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             cchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            45788999999999999999987 999999999999999999877663 2 26777777653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.85  E-value=1.5  Score=35.96  Aligned_cols=88  Identities=15%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++.    +...+  +  |..+.  ..+.+|+++....  
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~~v--i--~~~~~--~~~~~d~~i~~~~--  232 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAASA--G--GAYDT--PPEPLDAAILFAP--  232 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCcee--c--ccccc--CcccceEEEECCC--
Confidence            46788888754 5555566655 54 799999998877776552    32211  1  11111  1235787653111  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                         ....+....+.|+++|++++...
T Consensus       233 -------------------~~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       233 -------------------AGGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             -------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence                               12367778899999999987664

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.72  E-value=0.22  Score=42.74  Aligned_cols=112  Identities=24%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-------CCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------PFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~v~~   73 (201)
                      ..+|-+|-|+|.+...+....+ ..++++++++.+++.+.+.+.-..-.+..+.-.|....       .-.+..||+++.
T Consensus       297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~  376 (482)
T KOG2352|consen  297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV  376 (482)
T ss_pred             CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence            4678888888988887766544 39999999999999999886433212334444443221       123567899884


Q ss_pred             ccccceeeecCCCCCC-CCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .-       |+.+++. .-|-..--...++..+...|.|.|.+++.-.
T Consensus       377 dv-------ds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv  417 (482)
T KOG2352|consen  377 DV-------DSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV  417 (482)
T ss_pred             EC-------CCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence            21       1111111 1122223357889999999999999987543

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.59  E-value=0.24  Score=41.36  Aligned_cols=40  Identities=28%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHH
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~   41 (201)
                      +.++|+|+|.|+++..++-...-.|.+||-+....+.+++
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            4789999999999998865533399999999777666654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.58  E-value=0.54  Score=36.55  Aligned_cols=94  Identities=27%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~~~   74 (201)
                      +.+||..|+|+ |..+..+++....++++++.+++..+.+++.    +..  .++...-...     ....+.+|+++..
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~  208 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD--HVIDYKEEDLEEELRLTGGGGADVVIDA  208 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc--eeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence            46899999886 5566666665334899999998777666432    111  1111000000     1123568998853


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..-                     ...+..+.+.|+++|+++.....
T Consensus       209 ~~~---------------------~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         209 VGG---------------------PETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             CCC---------------------HHHHHHHHHhcccCCEEEEEccC
Confidence            210                     13566677888999998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.55  E-value=1.6  Score=38.16  Aligned_cols=116  Identities=15%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             CcEEEecCCCChhhHHHHhc---CC--CeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCC-CCC-CCCceeEEE
Q 028957            2 TSVLELGCGNSRLSEGLYND---GI--TAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLD-LPF-SNDCFDVVI   72 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~---~~--~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~-~~~-~~~~~D~v~   72 (201)
                      ..|.|..||+|.+.......   +.  ..+++.+..+.+...++.++...+.  +......+|-.. ... ...+||+|+
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~  298 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV  298 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence            47899999999988765432   21  2799999999999999888654432  122333334222 111 235689998


Q ss_pred             eccccceeeecCCCC--------CCC---CCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           73 EKATMEVLFVNSGDP--------WNP---QPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~--------~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ++-.+...+.....|        |..   .+. ...-..++..+..+|++||+..++
T Consensus       299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~afi~h~~~~L~~gG~~aiI  354 (501)
T TIGR00497       299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN-SKADLAFVLHALYVLGQEGTAAIV  354 (501)
T ss_pred             ecCCcccccccccccccccccchhcccCCCCC-chhhHHHHHHHHHhcCCCCeEEEE
Confidence            876554311100001        000   011 123357788888999999985554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.55  E-value=0.82  Score=38.93  Aligned_cols=87  Identities=11%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|+-+|+|. |......++. |. +|+.+|.++.....+..    .+.   ..+.  .... .  ...|+|+....  
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~~--~~e~-v--~~aDVVI~atG--  266 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVMT--MEEA-V--KEGDIFVTTTG--  266 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEcc--HHHH-H--cCCCEEEECCC--
Confidence            57899999998 6666555554 55 89999999887766654    222   2211  1111 1  24699885321  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHH-HhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEG-VHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~  121 (201)
                                         ...++.. ..+.+++||+++.....
T Consensus       267 -------------------~~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 -------------------NKDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             -------------------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence                               1234444 47899999998876543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.50  E-value=0.38  Score=39.17  Aligned_cols=99  Identities=15%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             CcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|.-+|.|. |..+..++.-...+|+.+|+|.+.++.....+..    ++.+..-+...+...-.+.|++|..-.+   
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLI---  241 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLI---  241 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEe---
Confidence            4566777775 6666555554334999999999999888776532    5666665555443334578998853221   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                  ......+-+.+++.+.||||+.++=+.
T Consensus       242 ------------pgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         242 ------------PGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             ------------cCCCCceehhHHHHHhcCCCcEEEEEE
Confidence                        122344667788899999998877443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.40  E-value=0.34  Score=40.34  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~~D~v~~~~   75 (201)
                      |++||-.|+|. |..+..+++. |..+|+++|.+++..+.+++.    +...+ .....|... + ....+.+|+|+...
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~  267 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVDYAFEMA  267 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence            46788888765 6666666665 544799999999888777542    22111 111111100 0 01123588888421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                     ....+....+.|+++|+++....
T Consensus       268 G---------------------~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         268 G---------------------SVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             C---------------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence            1                     12456677788999999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.39  E-value=0.7  Score=32.03  Aligned_cols=85  Identities=20%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEEeccccceeeecC
Q 028957           11 NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVIEKATMEVLFVNS   84 (201)
Q Consensus        11 ~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~   84 (201)
                      -|..+..+++....+|+++|.++...+.+++.    +.  ..++..+-.+.     . .+...+|+|+-...        
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------   67 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------   67 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--------
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc--cccccccccccccccccccccccceEEEEecC--------
Confidence            46777777776336999999999988888753    21  12222221111     1 22357999985321        


Q ss_pred             CCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           85 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                   ....++....+|+++|+++++....
T Consensus        68 -------------~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 -------------SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence                         1457888899999999999887654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.29  E-value=0.46  Score=39.04  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCC--CCCCCcee-EEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDL--PFSNDCFD-VVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~--~~~~~~~D-~v~~~   74 (201)
                      |.+||-.|+|+ |..+..+++. |...+++++.+++..+.+++.    +...+ .....+...+  ......+| +|+-.
T Consensus       161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~  236 (347)
T PRK10309        161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVLRELRFDQLILET  236 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence            46788888765 5666666665 553588999988877766432    22111 1111110000  01223566 55521


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                           .                .-...+....+.|+++|++++....
T Consensus       237 -----~----------------G~~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        237 -----A----------------GVPQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             -----C----------------CCHHHHHHHHHHhhcCCEEEEEccC
Confidence                 1                0134677788999999998887543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.17  E-value=1.8  Score=32.40  Aligned_cols=96  Identities=22%  Similarity=0.340  Sum_probs=59.3

Q ss_pred             cEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCCC
Q 028957            3 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLPF   63 (201)
Q Consensus         3 ~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~~   63 (201)
                      +|--+|+|+ | .++..++..|. +|+.+|.+++.++.+.+.+...       +          ..+++ ...|+...  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence            356688876 3 45555566677 9999999999998877765431       1          12333 33444332  


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                        ...|+|+-.-                ++..+..+++++++.+.+.|+..+...+.
T Consensus        77 --~~adlViEai----------------~E~l~~K~~~~~~l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   77 --VDADLVIEAI----------------PEDLELKQELFAELDEICPPDTILASNTS  115 (180)
T ss_dssp             --CTESEEEE-S-----------------SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred             --hhhheehhhc----------------cccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence              2568888531                14567788999999999999887665543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.39  E-value=0.69  Score=37.78  Aligned_cols=95  Identities=22%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCC-C-CCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDL-P-FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~-~-~~~~~~D~v~~~~   75 (201)
                      |.+||-.|+|. |..+..+++. |..+|++++.+++..+.+++.    +...+ .....+...+ . .....+|+|+...
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~  239 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIECS  239 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence            46788888764 5566666665 553499999998887776542    22111 1111111111 1 1223689988421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                     ....+....+.|+++|++++...
T Consensus       240 g---------------------~~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         240 G---------------------NTAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             C---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence            1                     12345666788999999887654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=91.38  E-value=0.94  Score=36.92  Aligned_cols=92  Identities=24%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc---ccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+||-.|||. |..+..+++. |..++++++.+++..+.+++.    +..  .++..   +..........+|+++...
T Consensus       166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~vi~~~~~~~~~~~~~~~~vd~vld~~  239 (339)
T cd08232         166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--ETVNLARDPLAAYAADKGDFDVVFEAS  239 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--EEEcCCchhhhhhhccCCCccEEEECC
Confidence            45778888765 6666666665 443789999888777755432    211  11111   1111111123488888521


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..                     ...++.+.+.|+++|+++...
T Consensus       240 g~---------------------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         240 GA---------------------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             CC---------------------HHHHHHHHHHHhcCCEEEEEe
Confidence            10                     235677789999999988664

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=90.80  E-value=0.39  Score=37.21  Aligned_cols=59  Identities=14%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      +-|+++|.|.|+++..+.+++......++.+...+...+...+... .+..+..+|+...
T Consensus        52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF  110 (326)
T ss_pred             ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence            3588999999999999999988788889988877766655433222 2566677776543

>PLN02740 Alcohol dehydrogenase-like

Probab=90.70  E-value=1.8  Score=36.21  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEc--ccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~--d~~~-~-~~~~~~~D~v~~   73 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++.++.+++    .+.+. +.....  +... + ....+.+|+|+-
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid  274 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMTGGGVDYSFE  274 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence            46788898865 6666666665 44379999999988887754    23211 111110  1110 0 111226898885


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      ...                     ....+......++++ |++++...
T Consensus       275 ~~G---------------------~~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        275 CAG---------------------NVEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             CCC---------------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence            221                     123566666788886 99877654

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=90.14  E-value=6.2  Score=31.38  Aligned_cols=104  Identities=14%  Similarity=0.080  Sum_probs=64.0

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcC---CCceEEEEcccCCC--------CCCCCceeE
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKG---YKEVKVLEADMLDL--------PFSNDCFDV   70 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~--------~~~~~~~D~   70 (201)
                      .|+.||||-=.-...+.  ....+..+|++ +++++.-++.+...+   ..+..++..|+...        .+.....=+
T Consensus        84 qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl  161 (260)
T TIGR00027        84 QVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA  161 (260)
T ss_pred             EEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence            58999998644443332  12135556665 556666666665432   24678888887621        122223345


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +++-+++.++             ..+...++++.+.+...||+.+++-...
T Consensus       162 ~i~EGvl~YL-------------~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       162 WLWEGLLMYL-------------TEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             eeecchhhcC-------------CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            5665666554             4577889999999988899888865443

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.11  E-value=2.8  Score=33.77  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=57.7

Q ss_pred             cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCCC
Q 028957            3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLPF   63 (201)
Q Consensus         3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~~   63 (201)
                      +|--+|+|+  +.++..++..|. .|+..|.+++.++.+.+++...       + .         .+++ ...|...   
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~---   81 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD---   81 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH---
Confidence            567788885  345555666677 9999999999988866653221       1 0         1111 1223211   


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc-cCCcEEEEEe
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS  119 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~  119 (201)
                       ....|+|+-.     +           ++..+....++..+-+.+ +|+..+.-.+
T Consensus        82 -~~~~d~ViEa-----v-----------~E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         82 -FADRQLVIEA-----V-----------VEDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             -hCCCCEEEEe-----c-----------ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             1345888853     1           144566678888888888 6766555433

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=89.99  E-value=1.3  Score=36.73  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++||-.|+|. |..+..+++. |. ++++++.+.+....+.+   ..+...  ++. .+...+....+.+|+|+-... 
T Consensus       184 g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~~--vi~~~~~~~~~~~~~~~D~vid~~g-  256 (360)
T PLN02586        184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGADS--FLVSTDPEKMKAAIGTMDYIIDTVS-  256 (360)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCcE--EEcCCCHHHHHhhcCCCCEEEECCC-
Confidence            45788888865 6666666665 44 78888877654332221   122211  111 110011000124788874211 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                          ....++...+.|+++|+++....
T Consensus       257 --------------------~~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        257 --------------------AVHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --------------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence                                12356777889999999887653

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=89.89  E-value=1.2  Score=35.16  Aligned_cols=104  Identities=21%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             CcEEEecCCCChhhHHHHh---c-C-CC-eEEEEECC--------------------------HHHHHHHHHHHhhcCC-
Q 028957            2 TSVLELGCGNSRLSEGLYN---D-G-IT-AITCIDLS--------------------------AVAVEKMQERLLLKGY-   48 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~---~-~-~~-~v~~vD~~--------------------------~~~~~~~~~~~~~~~~-   48 (201)
                      .-|+|+||-.|..+..++.   . + .. ++++.|.=                          ....+..++++...+. 
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~  155 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL  155 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence            4589999999986655432   1 2 22 78888821                          1134444555544442 


Q ss_pred             -CceEEEEcccCC-CC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           49 -KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        49 -~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                       +++.++.+...+ ++ .+..++-++..         |.+        -.+.....|+.++..|.|||.+++-++..
T Consensus       156 ~~~v~~vkG~F~dTLp~~p~~~IAll~l---------D~D--------lYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  156 DDNVRFVKGWFPDTLPDAPIERIALLHL---------DCD--------LYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             STTEEEEES-HHHHCCC-TT--EEEEEE--------------------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             cccEEEECCcchhhhccCCCccEEEEEE---------ecc--------chHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence             578999998764 33 22233322221         111        12557889999999999999999887765

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=89.86  E-value=2.5  Score=36.19  Aligned_cols=88  Identities=10%  Similarity=0.218  Sum_probs=51.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|+-+|+|. |......++. |. +|+.+|.++.....+..    .+.   .+.  ++...   ....|+|+....  
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~---~v~--~l~ea---l~~aDVVI~aTG--  276 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF---RVM--TMEEA---AELGDIFVTATG--  276 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC---Eec--CHHHH---HhCCCEEEECCC--
Confidence            57889999986 4444444443 55 89999998865433322    121   211  22211   135799886311  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~~  122 (201)
                                         ...++. .....+|+|+.++......
T Consensus       277 -------------------~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        277 -------------------NKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             -------------------CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                               123444 6778899999888765443

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=89.66  E-value=0.65  Score=36.97  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             CcEEEecCCCChhhHHHHhcC-----CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~-----~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~   62 (201)
                      ..++|+|||.|.++..++...     .. .++.||-.....+.-. ...... .+.+.-+..|+.++.
T Consensus        20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccc
Confidence            358999999999999998764     22 8999998654443222 222221 124555666666543

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=89.57  E-value=0.27  Score=43.48  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~v   71 (201)
                      ..||||||.+|++.+-.++..+.  -|+|+|+-+-           ..++++..++.|+....        ...-+.|+|
T Consensus        46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~advV  114 (780)
T KOG1098|consen   46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWKADVV  114 (780)
T ss_pred             chheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEE
Confidence            57999999999999988876332  8999998542           12344444445544311        122345777


Q ss_pred             EeccccceeeecCCCCCCCCCccHH-HHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVT-KVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..++-.     -+.-|........ -....+.-....|+.||.++--.+
T Consensus       115 LhDgapn-----Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf  159 (780)
T KOG1098|consen  115 LHDGAPN-----VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF  159 (780)
T ss_pred             eecCCCc-----cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence            7433211     1223421111111 123556667788999999664333

>PLN02827 Alcohol dehydrogenase-like

Probab=89.54  E-value=2.7  Score=35.16  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEE--cccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLE--ADMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~--~d~~~-~-~~~~~~~D~v~~   73 (201)
                      |.+||-.|+|. |.++..+++. |...++++|.+++..+.+++    .+.+.+ ....  .+... + ....+.+|+|+-
T Consensus       194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid  269 (378)
T PLN02827        194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE  269 (378)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence            46788888765 6666666665 55468899988887776644    232111 1111  01111 0 011235888884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      ...                     ....+....+.+++| |++++...
T Consensus       270 ~~G---------------------~~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        270 CVG---------------------DTGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CCC---------------------ChHHHHHHHHhhccCCCEEEEECC
Confidence            211                     123456677888998 99887654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.32  E-value=5  Score=32.64  Aligned_cols=100  Identities=13%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH--HhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER--LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~--~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      ++|+=+|+|.  |.++..|++.|. .|+.++-+.+.++..++.  +.-............... +.....+|+|+..-  
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~v--   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLAC--   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEEC--
Confidence            5788999996  456666666666 899999877666555432  100000010111111111 11235789887521  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                      ..-+...+++.+...+.++..++.....
T Consensus        79 ----------------K~~~~~~al~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         79 ----------------KAYDAEPAVASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             ----------------CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence                            1124567888999999999887766544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.17  E-value=2.7  Score=33.77  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      ++|.-+|+|.  +.++..++..|. +|+.+|.+++.++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~   43 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQE   43 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence            4677788875  345555566676 899999999999887654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.02  E-value=2.5  Score=37.92  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             cEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      +|+=+|  .|.++..+++    .+. +++.+|.+++.++.+++.       ...++.+|+.+..    ..-.+.|++++.
T Consensus       402 ~vII~G--~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        402 QVIIVG--FGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CEEEec--CchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            444454  4555555544    344 899999999998887642       4578999988742    233467877752


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ..                 +.+.-..+ -...+.+.|..+++....+..
T Consensus       472 ~~-----------------d~~~n~~i-~~~~r~~~p~~~IiaRa~~~~  502 (601)
T PRK03659        472 CN-----------------EPEDTMKI-VELCQQHFPHLHILARARGRV  502 (601)
T ss_pred             eC-----------------CHHHHHHH-HHHHHHHCCCCeEEEEeCCHH
Confidence            11                 11222233 333455678888887665443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=88.97  E-value=1.9  Score=36.35  Aligned_cols=69  Identities=25%  Similarity=0.327  Sum_probs=47.1

Q ss_pred             CCcEEEecCCC-ChhhHHH-HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l-~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~   73 (201)
                      .++||-+|||. |...... ++.+-.+|+..|-+.+.+..+.....    .+++..+.|+.+.+   ---..+|+|+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence            36899999975 5444444 44453499999999988877765432    27888999988753   01134588885

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=88.77  E-value=4.6  Score=33.09  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~-~~~~~~D~v~~~   74 (201)
                      |.+||-.|+|. |..+..+++. |...+++++.+++..+.+++    .+.+.+ .....+... + . .....+|+++..
T Consensus       167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~  242 (351)
T cd08285         167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA  242 (351)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence            45778887764 5566666665 45479999998877766654    222111 111111100 0 1 122458988842


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                     -...+..+.+.|+++|+++....
T Consensus       243 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         243 GG---------------------GQDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CC---------------------CHHHHHHHHHHhhcCCEEEEecc
Confidence            11                     02466788888999999886543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=88.54  E-value=3.6  Score=34.82  Aligned_cols=42  Identities=14%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CCcEEEec-CCC-ChhhHHHHhc---CCCeEEEEECCHHHHHHHHHH
Q 028957            1 MTSVLELG-CGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         1 ~~~vLDlG-~G~-G~~~~~l~~~---~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      |.+|+-+| +|. |..+..+++.   +..+|+++|.+++.++.+++.
T Consensus       176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            35788886 454 7777777776   233799999999998888764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.29  E-value=3.9  Score=36.82  Aligned_cols=64  Identities=20%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             CcEEEecCCC-ChhhHHH-HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l-~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      .+|+=+|||. |...... .+.+. +++.+|.+++.++.+++.       ...++.+|+.+..    ..-...|++++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            3567777765 4433332 23355 899999999999888652       4578999988742    23346787775

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.11  E-value=2.6  Score=34.81  Aligned_cols=94  Identities=20%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc-ccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~~~~~~D~v~~   73 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++..+.+++.+   +...+ ..... +... + ....+.+|+++.
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d  234 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGIDIYFD  234 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence            467888887 3 47777777776 54 8999998888776665322   22111 11111 1111 0 111245888884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                    .  ...+....+.|+++|+++++..
T Consensus       235 ~v--------------------G--~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        235 NV--------------------G--GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             CC--------------------C--HHHHHHHHHHhccCCEEEEECc
Confidence            21                    1  1366778889999999887653

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=87.60  E-value=5.5  Score=33.60  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~~~~D~v~~~   74 (201)
                      |++||-.|+|. |..+..+++. |...++.+|.+++.++.+++.    +...+.... .+... + . .....+|+++-.
T Consensus       186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~  261 (393)
T TIGR02819       186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCETVDLSKDATLPEQIEQILGEPEVDCAVDC  261 (393)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCeEEecCCcccHHHHHHHHcCCCCCcEEEEC
Confidence            45677777765 5666666665 554567778888777777652    321111100 11110 1 0 122358988843


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .....      .+|..+. ........++...++++++|++++....
T Consensus       262 ~G~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       262 VGFEA------RGHGHDG-KKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCcc------ccccccc-cccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            22100      0000000 0011234788888999999999987653

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=87.51  E-value=1.6  Score=35.03  Aligned_cols=45  Identities=22%  Similarity=0.113  Sum_probs=39.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      ++.|||.-+|+|..+....+.+. .++++|++++.++.+.+++...
T Consensus       223 ~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         223 GDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            57899999999999988877776 8999999999999999987654

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.41  E-value=2.2  Score=34.11  Aligned_cols=66  Identities=12%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      |+...|+|+-+|+++..+.+++- .|+++|..+- .+..    -.  ...++....|.++........|-.+|.
T Consensus       212 ~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m-a~sL----~d--tg~v~h~r~DGfk~~P~r~~idWmVCD  277 (358)
T COG2933         212 GMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM-AQSL----MD--TGQVTHLREDGFKFRPTRSNIDWMVCD  277 (358)
T ss_pred             CceeeecccCCCccchhhhhcce-EEEEeccchh-hhhh----hc--ccceeeeeccCcccccCCCCCceEEee
Confidence            45678999999999999999877 8999997542 2211    11  236677777777654444566766664

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.23  E-value=2.6  Score=33.86  Aligned_cols=94  Identities=24%  Similarity=0.284  Sum_probs=54.5

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc--------CC----------CceEEEEcccCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--------GY----------KEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~--------~~----------~~i~~~~~d~~~~   61 (201)
                      .+|--+|+|.  +.++..++..|. +|+.+|.+++.++.+++.....        ..          .++. ...|....
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH
Confidence            3577788875  234444455566 8999999999888777653211        00          1222 12232211


Q ss_pred             CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                         -...|+|+..-.                +..+....+++++.+.++++..+.
T Consensus        82 ---~~~aDlVieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         82 ---VKDADLVIEAVP----------------EDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             ---hcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCCEEE
Confidence               134588885311                233456788888888887766543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.22  E-value=3.2  Score=33.65  Aligned_cols=74  Identities=19%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |..||==|+|+|   .++.++++++. +++..|++++..+...+..+..|  ++.....|+.+..          -.-+.
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            456676777776   35666677777 89999999988888887777655  6788888887632          22467


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       115 V~ILVNNAGI  124 (300)
T KOG1201|consen  115 VDILVNNAGI  124 (300)
T ss_pred             ceEEEecccc
Confidence            8999987554

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.85  E-value=6.8  Score=35.95  Aligned_cols=97  Identities=19%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~   62 (201)
                      .+|--||+|+  ..++..++..|. .|+.+|.+++.++.+.+++...       +          ..++++. .|...  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence            4678899998  345555667777 9999999999988776654221       1          1123222 22211  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                        -...|+|+-.     +           ++..+-.+++++++-+.++|+..+.-.+.
T Consensus       390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTS  429 (715)
T PRK11730        390 --FERVDVVVEA-----V-----------VENPKVKAAVLAEVEQKVREDTILASNTS  429 (715)
T ss_pred             --hcCCCEEEec-----c-----------cCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence              1356888842     1           15567788999999999999876654443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.81  E-value=5.8  Score=36.38  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~   62 (201)
                      ++|--+|+|+  +.++..++..|. .|+.+|.+++.++.+.++....       +          ..+++.. .|...  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  389 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG--  389 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence            3677889987  355555667777 9999999999988776654321       1          0122221 12211  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                        -...|+|+-.- +               +..+-.++++.++-++++|+..|.-.+
T Consensus       390 --~~~aDlViEav-~---------------E~l~~K~~vf~~l~~~~~~~~ilasnT  428 (714)
T TIGR02437       390 --FDNVDIVVEAV-V---------------ENPKVKAAVLAEVEQHVREDAILASNT  428 (714)
T ss_pred             --hcCCCEEEEcC-c---------------ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence              23568888531 1               455778899999999999987765443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08265 short chain dehydrogenase; Provisional

Probab=86.76  E-value=10  Score=29.61  Aligned_cols=69  Identities=14%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|-.|++ |.++..+    ++.|. +|+.++.+.+..+...+..   + .++.++..|+.+..     +     ..+.
T Consensus         7 k~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          7 KVAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFGR   80 (261)
T ss_pred             CEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            566767654 4444444    44466 8999999876555444332   2 25778888987632     0     1245


Q ss_pred             eeEEEeccc
Q 028957           68 FDVVIEKAT   76 (201)
Q Consensus        68 ~D~v~~~~~   76 (201)
                      .|+++.+..
T Consensus        81 id~lv~~ag   89 (261)
T PRK08265         81 VDILVNLAC   89 (261)
T ss_pred             CCEEEECCC
Confidence            788886543

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=86.74  E-value=4  Score=33.80  Aligned_cols=94  Identities=23%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|+-.|+|. |..+..+++. |. ++++++.+++....+.+.   .+...+ +...+...+......+|+++-...  
T Consensus       181 g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g--  253 (357)
T PLN02514        181 GLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGADDY-LVSSDAAEMQEAADSLDYIIDTVP--  253 (357)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCcEE-ecCCChHHHHHhcCCCcEEEECCC--
Confidence            45677777654 6666666665 44 788888777655444332   232111 111110011000124788774211  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                         ....++...+.|+++|+++....
T Consensus       254 -------------------~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        254 -------------------VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             -------------------chHHHHHHHHHhccCCEEEEECC
Confidence                               12356667788999999887654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=86.54  E-value=7.7  Score=31.34  Aligned_cols=93  Identities=24%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~   74 (201)
                      +.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.    +..  .++..+-...    ....+.+|+++..
T Consensus       160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~v~~~  233 (334)
T cd08234         160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDVVIEA  233 (334)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence            45788887653 5555555555 443488899888877766432    211  1221111110    1123568998852


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                     ....+....+.|+++|+++....
T Consensus       234 ~~---------------------~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         234 TG---------------------VPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             CC---------------------ChHHHHHHHHHHhcCCEEEEEec
Confidence            11                     12466777888999999887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.43  E-value=6.3  Score=32.47  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-------cCC------CceEEEEcccCCCCCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGY------KEVKVLEADMLDLPFSND   66 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-------~~~------~~i~~~~~d~~~~~~~~~   66 (201)
                      ++|--+|+|+  ..++..++..|. .|+..|.+++.++.+...+..       .+.      .++.+. .+...   .-.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av~   82 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CVA   82 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hhc
Confidence            4677888885  345555667777 999999999887766554321       110      112211 11111   013


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG  113 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG  113 (201)
                      ..|+|+-.-                ++..+-...+++++.+.++|+.
T Consensus        83 ~aDlViEav----------------pE~l~vK~~lf~~l~~~~~~~a  113 (321)
T PRK07066         83 DADFIQESA----------------PEREALKLELHERISRAAKPDA  113 (321)
T ss_pred             CCCEEEECC----------------cCCHHHHHHHHHHHHHhCCCCe
Confidence            458888532                1455667789999999999876

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.40  E-value=14  Score=28.89  Aligned_cols=74  Identities=14%  Similarity=0.043  Sum_probs=42.5

Q ss_pred             CCcEEEecCCCC-hhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNS-RLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G-~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+++|-.|+++| .++..++    +.|. +|+.++.+....+.+++.....  +...++..|+.+..          -..
T Consensus        10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~   86 (258)
T PRK07533         10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEEW   86 (258)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence            467888887762 5555444    4466 7888888755433333322221  23456778876532          112


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+..+
T Consensus        87 g~ld~lv~nAg~   98 (258)
T PRK07533         87 GRLDFLLHSIAF   98 (258)
T ss_pred             CCCCEEEEcCcc
Confidence            568998876543

>PRK08324 short chain dehydrogenase; Validated

Probab=86.31  E-value=7.7  Score=35.31  Aligned_cols=72  Identities=19%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      |++||-.|++ |.++..++    ..|. +|+++|.++...+.+.+.+...  .++.++..|+.+..     +     ..+
T Consensus       422 gk~vLVTGas-ggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        422 GKVALVTGAA-GGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCEEEEecCC-CHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3567777653 44444443    3466 8999999988776665544332  36778888876532     1     123


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      .+|+|+.+..
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            6798886544

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.28  E-value=16  Score=29.51  Aligned_cols=78  Identities=24%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+.|+==||-+|   .++..++++|. +++.+-...+.++...+.+...+.. ++.++++|+.+..          ..-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            355666677666   34555566676 6666777777777775555544433 4889999998753          2346


Q ss_pred             ceeEEEeccccce
Q 028957           67 CFDVVIEKATMEV   79 (201)
Q Consensus        67 ~~D~v~~~~~l~~   79 (201)
                      ..|+.+.|..+..
T Consensus        91 ~vDvLVNNAG~~~  103 (282)
T KOG1205|consen   91 RVDVLVNNAGISL  103 (282)
T ss_pred             CCCEEEecCcccc
Confidence            7899998877654

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.25  E-value=3.1  Score=32.30  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----------PFSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----------~~~~   65 (201)
                      ++.||-.||..|+++.+++..    |+ .|+++--+-+........+      .+.....|+.+.           .+++
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~------gl~~~kLDV~~~~~V~~v~~evr~~~~   79 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF------GLKPYKLDVSKPEEVVTVSGEVRANPD   79 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh------CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence            367899999999988877654    66 8888876644333333221      456666776542           1467


Q ss_pred             CceeEEEecccccee
Q 028957           66 DCFDVVIEKATMEVL   80 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~   80 (201)
                      ++.|+.+-+..-.+.
T Consensus        80 Gkld~L~NNAG~~C~   94 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCT   94 (289)
T ss_pred             CceEEEEcCCCCCcc
Confidence            888988876655554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.23  E-value=12  Score=30.03  Aligned_cols=93  Identities=25%  Similarity=0.274  Sum_probs=54.5

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~   62 (201)
                      .+|.=+|+|.  +.++..++..|. +|+..|.+++.++.+.+.+...       + .         .++.+ ..|...  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence            3567788875  244555556666 8999999999887765432211       1 1         11222 223221  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                        ....|+|+..-.                +.......+++.+...++++..++
T Consensus        81 --~~~aD~Vieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         81 --LADCDLVIEAAT----------------EDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             --hcCCCEEEEcCc----------------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence              135688885311                222345677888888998887655

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.10  E-value=5.8  Score=35.14  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=40.6

Q ss_pred             cEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            3 SVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      +|+=+|||.  .+..+++    .+. +++.+|.+++.++.+++.       ....+.+|+.+..    ..-+++|.++.
T Consensus       419 hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        419 HALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            455566654  4444444    344 899999999988877642       5688999988732    23356786664

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.85  E-value=7.5  Score=26.98  Aligned_cols=88  Identities=13%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             CcEEEecCCCC-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccce
Q 028957            2 TSVLELGCGNS-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~   79 (201)
                      .+|.|+|-|-= ..+..++++|+ .++++|+++.       +..    ..++++..|+++-... -...|+|.+.     
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSi-----   77 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSI-----   77 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeec-----
Confidence            48999998864 45556667787 8999999875       111    2578999998874321 1346888762     


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   ++.+++...+-.+.+.+  |..+++...+
T Consensus        78 -------------RpppEl~~~ildva~aV--ga~l~I~pL~  104 (129)
T COG1255          78 -------------RPPPELQSAILDVAKAV--GAPLYIKPLT  104 (129)
T ss_pred             -------------CCCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence                         33355555555555544  3445555444

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=85.83  E-value=5.1  Score=36.28  Aligned_cols=103  Identities=11%  Similarity=0.151  Sum_probs=57.0

Q ss_pred             cEEEecCCCChhhHHHHhcC-------C-----C-eEEEEECCH---HHHHHHHHH-----------Hhh-----cCC--
Q 028957            3 SVLELGCGNSRLSEGLYNDG-------I-----T-AITCIDLSA---VAVEKMQER-----------LLL-----KGY--   48 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~-------~-----~-~v~~vD~~~---~~~~~~~~~-----------~~~-----~~~--   48 (201)
                      +|+|+|=|+|.......+..       +     . +++++|..+   +.+..+...           ...     .+.  
T Consensus        60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~  139 (662)
T PRK01747         60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHR  139 (662)
T ss_pred             EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceE
Confidence            69999999998655554221       1     2 899999643   333332211           111     011  


Q ss_pred             -----C--ceEEEEcccCCC-CCCCCceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcEEEEE
Q 028957           49 -----K--EVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        49 -----~--~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~  118 (201)
                           .  .+.+..+|+.+. +.-...+|+++..+    +     -|    ..+.+- -..+++.+.+.++|||++.-.
T Consensus       140 ~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~----F-----sP----~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        140 LLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG----F-----AP----AKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             EEecCCcEEEEEEecCHHHHHHhccccccEEEeCC----C-----CC----ccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence                 0  234566776542 21124578877422    1     11    011122 268999999999999998744

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=85.78  E-value=2.9  Score=34.63  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcc--cC-CC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEAD--ML-DL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d--~~-~~-~~~~~~~D~v~~   73 (201)
                      |.+||-.|+|. |..+..+++. |..+|++++.+++..+.+++.    +...+ .....+  .. .+ ......+|+|+-
T Consensus       185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid  260 (365)
T cd08277         185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVDYSFE  260 (365)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCCCCCEEEE
Confidence            46788888754 5555556665 444799999988887777542    22111 111100  00 00 011245898884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      ...                     ....+....+.++++ |+++....
T Consensus       261 ~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         261 CTG---------------------NADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCC---------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence            211                     023566777888875 99887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=85.71  E-value=2.5  Score=34.43  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=51.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C--CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~--~~~~~~~D~v~~~   74 (201)
                      +.+||-.|+|. |..+..+++. +...+++++.++...+.+++.    +... +.....+... +  ..+.+.+|+++..
T Consensus       168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~  243 (347)
T cd05278         168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCVIEA  243 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence            35677777653 5566666665 433788888877666655532    1111 1111111100 0  0123568988742


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..                     ....+....+.|+++|+++...
T Consensus       244 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         244 VG---------------------FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             cC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence            11                     0136777788999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.53  E-value=9.9  Score=34.86  Aligned_cols=96  Identities=19%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CcEEEecCCC-C-hhhHHHH-hcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCC
Q 028957            2 TSVLELGCGN-S-RLSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~-~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~   61 (201)
                      ++|--+|+|+ | .++..++ ..|. .|+.+|.+++.++.+.+++...       +          ..++++. .|... 
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-  386 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG-  386 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence            4678899998 3 4444455 5577 9999999999888876654321       1          1123322 22211 


Q ss_pred             CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                         -...|+|+-.     +           ++..+-.+++++++-+.++|+..+.-.+
T Consensus       387 ---~~~aDlViEa-----v-----------~E~~~~K~~v~~~le~~~~~~~ilasnT  425 (708)
T PRK11154        387 ---FKHADVVIEA-----V-----------FEDLALKQQMVAEVEQNCAPHTIFASNT  425 (708)
T ss_pred             ---hccCCEEeec-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence               1346888742     1           1556778899999999999987766443

>PRK08339 short chain dehydrogenase; Provisional

Probab=85.43  E-value=6.3  Score=30.97  Aligned_cols=75  Identities=11%  Similarity=0.091  Sum_probs=45.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCCce
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~~~   68 (201)
                      ++++|-.|++.|   .++..+++.|. +|+.++.+++.++.+.+.+....-.++.++..|+.+..         ...+..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            356677776554   23334445576 89999999887776665554321136778888887632         012457


Q ss_pred             eEEEeccc
Q 028957           69 DVVIEKAT   76 (201)
Q Consensus        69 D~v~~~~~   76 (201)
                      |+++.+..
T Consensus        87 D~lv~nag   94 (263)
T PRK08339         87 DIFFFSTG   94 (263)
T ss_pred             cEEEECCC
Confidence            88776543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=85.40  E-value=6.7  Score=30.80  Aligned_cols=92  Identities=25%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+||-.|+|. |..+..+++. +..++++++.+++..+.+++. .  ....+.....+    ......+|+++....  
T Consensus        98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~-g--~~~~~~~~~~~----~~~~~~~d~vl~~~~--  168 (277)
T cd08255          98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL-G--PADPVAADTAD----EIGGRGADVVIEASG--  168 (277)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc-C--CCccccccchh----hhcCCCCCEEEEccC--
Confidence            35677777765 5565666665 442399999988887765542 1  01111100000    112346888884211  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                         ....+....+.|+++|+++....
T Consensus       169 -------------------~~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         169 -------------------SPSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             -------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence                               02356777888999999886643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=85.36  E-value=2.8  Score=34.50  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~   41 (201)
                      |.+||-.|||. |..+..+++. |. ++++++.+++.++.+++
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            46889999865 6666666665 55 89999999988877754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=85.21  E-value=2.4  Score=35.16  Aligned_cols=96  Identities=14%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc--ccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA--DMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~--d~~~-~-~~~~~~~D~v~~   73 (201)
                      |.+||-.|+|. |..+..+++. |...|++++.+++..+.+++    .+...+ .....  +... + ....+.+|+|+-
T Consensus       187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid  262 (368)
T cd08300         187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFE  262 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence            46788888764 5666666665 44379999999988877754    222111 11111  1110 0 111236888884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  121 (201)
                      ...                     -...+....+.++++ |+++.....
T Consensus       263 ~~g---------------------~~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         263 CIG---------------------NVKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             CCC---------------------ChHHHHHHHHhhccCCCeEEEEccC
Confidence            211                     023566677888887 998876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.16  E-value=8.6  Score=30.91  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      .+|.-+|+|.  +.++..++..|. +|+.+|.+++.++.+.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~   45 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMEL   45 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence            3677788885  345555566676 899999999998876554

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=84.98  E-value=2.5  Score=34.65  Aligned_cols=95  Identities=25%  Similarity=0.285  Sum_probs=53.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~-~~~~~~D~v~~~   74 (201)
                      |.+||-.|+|. |..+..+++. |...|++++.+++..+.+++.    +.+.+ .....+... + . .....+|+++-.
T Consensus       173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~  248 (351)
T cd08233         173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDVSFDC  248 (351)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCEEEEC
Confidence            35677777643 4555555555 444789999888877766442    22111 111111100 0 0 122348998842


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                     ....++.+.+.|+++|+++....
T Consensus       249 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         249 AG---------------------VQATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CC---------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence            11                     02356777888999999887654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.83  E-value=5.7  Score=33.84  Aligned_cols=87  Identities=11%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|+-+|+|. |......++. |. +|+++|.++.....+..    .+.   .+.  +.... .  ...|+|++...  
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~---~v~--~leea-l--~~aDVVItaTG--  259 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF---RVM--TMEEA-A--KIGDIFITATG--  259 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC---EeC--CHHHH-H--hcCCEEEECCC--
Confidence            57899999987 5555555554 44 89999998865433321    121   222  11111 1  24598876311  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~  121 (201)
                                         ...++. +....+|+|++++.....
T Consensus       260 -------------------~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 -------------------NKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             -------------------CHHHHHHHHHhcCCCCcEEEEECCC
Confidence                               133444 477889999998876544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06701 short chain dehydrogenase; Provisional

Probab=84.74  E-value=16  Score=29.17  Aligned_cols=112  Identities=14%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCH-HHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CC
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~   66 (201)
                      +++|-.|++. .++..+    ++.|. +|+.++.+. ...+.....+...+ .++.++..|+.+..     +.     .+
T Consensus        47 k~iLItGasg-gIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         47 KVALITGGDS-GIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5677777644 444444    44566 788887764 23333333333323 35778888886532     10     13


Q ss_pred             ceeEEEeccccceeeecCCCCCCCC-Cc--------cHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQ-PE--------TVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..|+++.+......    ..++.+. .+        +......+++.+.+.++++|.++++..
T Consensus       124 ~iD~lI~~Ag~~~~----~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        124 RLDILVNNAAFQYP----QQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             CCCEEEECCcccCC----CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence            57888865432111    0000000 00        001133455566666677788776653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.60  E-value=6.7  Score=36.15  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~   62 (201)
                      ++|--+|+|+  +.++..++..|. .|+.+|.+++.++.+.+++...       + +         .++++. .|...  
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  411 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--  411 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence            3677889987  345555666777 9999999999988876654322       1 0         122222 22211  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                        -...|+|+-.     +           +++.+-..+++.++-++++|+..+.-.+.
T Consensus       412 --~~~aDlViEA-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTS  451 (737)
T TIGR02441       412 --FKNADMVIEA-----V-----------FEDLSLKHKVIKEVEAVVPPHCIIASNTS  451 (737)
T ss_pred             --hccCCeehhh-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence              1346887742     2           14557788999999999999877664443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07102 short chain dehydrogenase; Provisional

Probab=84.32  E-value=6.3  Score=30.32  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=44.7

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C--CCCceeE
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F--SNDCFDV   70 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~--~~~~~D~   70 (201)
                      ++++-.|+ +|.++..+++    .|. +|++++.+++..+...+.+......++.+++.|+.+..     .  -...+|+
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            57777774 4555555444    465 89999998876655544443333347888999987632     0  0124688


Q ss_pred             EEecc
Q 028957           71 VIEKA   75 (201)
Q Consensus        71 v~~~~   75 (201)
                      ++.+.
T Consensus        80 vv~~a   84 (243)
T PRK07102         80 VLIAV   84 (243)
T ss_pred             EEECC
Confidence            88643

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=84.30  E-value=18  Score=30.56  Aligned_cols=98  Identities=24%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV   82 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~   82 (201)
                      +|+-++-.-|.++..++..++..  ..| +--.-....+|+..++++.-.+...+... +++ +.+|+|+...       
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~~~--~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~-~~~d~vl~~~-------  114 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKPYS--IGD-SYISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLIKV-------  114 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCCCe--eeh-HHHHHHHHHHHHHHcCCCcccceeecccc-ccc-CCCCEEEEEe-------
Confidence            68889999999999998655521  133 33344556667777765322222222222 233 4589988521       


Q ss_pred             cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                               |++.......+..+...|.||+.+++....
T Consensus       115 ---------PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~  144 (378)
T PRK15001        115 ---------PKTLALLEQQLRALRKVVTSDTRIIAGAKA  144 (378)
T ss_pred             ---------CCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence                     256678889999999999999998765443

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=84.27  E-value=14  Score=28.61  Aligned_cols=71  Identities=14%  Similarity=0.127  Sum_probs=42.9

Q ss_pred             CcEEEecCCCCh--hhHHHH--hc--CCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccC-CCCCCCCceeEEEe
Q 028957            2 TSVLELGCGNSR--LSEGLY--ND--GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADML-DLPFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~--~~~~l~--~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~-~~~~~~~~~D~v~~   73 (201)
                      +.+++..|+.|.  .++.|+  .+  +. ++++|-.+++.+...++.+...+.. .++|+.++.. .+-..-...|.++.
T Consensus        43 kliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV  121 (218)
T PF07279_consen   43 KLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV  121 (218)
T ss_pred             eEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence            356777655432  233332  22  33 8999999988887777777766643 3588888743 22212245777773

The function of this family is unknown.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=84.23  E-value=4.5  Score=31.42  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++++=+|||. | .++..|.+.|. .|+.+|.+++.++.....-     .....+++|..+..    ..-..+|++++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE-----LDTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh-----cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            4677788886 3 33444444455 8999999999877743210     14678888887632    33456888886

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.02  E-value=11  Score=30.38  Aligned_cols=87  Identities=22%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++ +   +...+...    .. ......+|+++....  
T Consensus       156 g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~~~~----~~-~~~~~~~d~vid~~g--  223 (319)
T cd08242         156 GDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-L---GVETVLPD----EA-ESEGGGFDVVVEATG--  223 (319)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-c---CCcEEeCc----cc-cccCCCCCEEEECCC--
Confidence            35677776543 4444444444 55 79999988888777765 2   22111111    11 122356898885211  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                         -...++...+.|+++|+++..
T Consensus       224 -------------------~~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         224 -------------------SPSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             -------------------ChHHHHHHHHHhhcCCEEEEE
Confidence                               023566777888999998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08293 PTGR2 Prostaglandin reductase

Probab=83.77  E-value=11  Score=30.71  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-CCCCCceeEEEecc
Q 028957            2 TSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~~D~v~~~~   75 (201)
                      ++||-.|+  |.|..+..+++. |..+|++++.+++..+.+++.+   +...+ .....+... + ......+|+|+...
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid~~  232 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFDNV  232 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence            67888886  346777777776 4437999998887776665532   22221 111111110 0 11124689888421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                      ...+....+.|+++|+++...
T Consensus       233 g----------------------~~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         233 G----------------------GEISDTVISQMNENSHIILCG  254 (345)
T ss_pred             C----------------------cHHHHHHHHHhccCCEEEEEe
Confidence            1                      113467788999999988754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=83.59  E-value=13  Score=29.49  Aligned_cols=71  Identities=30%  Similarity=0.368  Sum_probs=43.0

Q ss_pred             CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHH-------------------HHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-------------------VEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~-------------------~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      .+|+-+|+|. |+++.+++.+ |..+++.+|.+.-.                   ++.++++...-+ |++++...+.+-
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In-P~c~V~~~~~f~  109 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN-PECEVTAINDFI  109 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC-CCceEeehHhhh
Confidence            5788899976 8888777554 77789999965433                   233444443322 455555544432


Q ss_pred             CC-----CCCCceeEEEe
Q 028957           61 LP-----FSNDCFDVVIE   73 (201)
Q Consensus        61 ~~-----~~~~~~D~v~~   73 (201)
                      .+     +-...||.|+-
T Consensus       110 t~en~~~~~~~~~DyvID  127 (263)
T COG1179         110 TEENLEDLLSKGFDYVID  127 (263)
T ss_pred             CHhHHHHHhcCCCCEEEE
Confidence            11     23357898883

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=83.59  E-value=3.4  Score=33.58  Aligned_cols=94  Identities=21%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C--CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L--PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~~~~~~D~v~~~   74 (201)
                      +.+||-.|+|. |..+..+++. +. +++++..+++..+.+++.    +...+ .....+... +  ..+...+|+++..
T Consensus       160 g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~  234 (337)
T cd08261         160 GDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADVVIDA  234 (337)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence            45788887654 5666666665 54 888888887777666432    11111 111111100 1  1223458998852


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                     -...+..+.+.|+++|+++....
T Consensus       235 ~g---------------------~~~~~~~~~~~l~~~G~~i~~g~  259 (337)
T cd08261         235 TG---------------------NPASMEEAVELVAHGGRVVLVGL  259 (337)
T ss_pred             CC---------------------CHHHHHHHHHHHhcCCEEEEEcC
Confidence            11                     02356777889999999886543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=83.49  E-value=7.5  Score=31.34  Aligned_cols=88  Identities=22%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEecccc
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      .+|+=+|.|-  |.++..+...|.. .+++.|.+...++.+.+.       .+..-. .+...  ......|+|+.+-  
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-------gv~d~~~~~~~~--~~~~~aD~Vivav--   72 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-------GVIDELTVAGLA--EAAAEADLVIVAV--   72 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-------Ccccccccchhh--hhcccCCEEEEec--
Confidence            4567777764  5566666666765 689999888777766532       111111 11101  1134579998643  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                      +......+++++...|++|..+.
T Consensus        73 ----------------Pi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          73 ----------------PIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             ----------------cHHHHHHHHHHhcccCCCCCEEE
Confidence                            33566888999998888876655

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.48  E-value=2.8  Score=30.08  Aligned_cols=37  Identities=11%  Similarity=0.194  Sum_probs=24.3

Q ss_pred             EecCCCC--hhhHHHH--hcCCC-eEEEEECCHHHHHHHHHH
Q 028957            6 ELGCGNS--RLSEGLY--NDGIT-AITCIDLSAVAVEKMQER   42 (201)
Q Consensus         6 DlG~G~G--~~~~~l~--~~~~~-~v~~vD~~~~~~~~~~~~   42 (201)
                      |+|+..|  ..+..++  ..+.. +|+++|+++...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443  23333 899999999999999888

; PDB: 2PY6_A.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=83.39  E-value=5.1  Score=33.56  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHH-HHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~-~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      |++||-.|+|. |..+..+++. |. ++++++.+++. .+.++    ..+.+.  ++. .+...+.-..+.+|+|+-...
T Consensus       179 g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~----~lGa~~--~i~~~~~~~v~~~~~~~D~vid~~G  251 (375)
T PLN02178        179 GKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID----RLGADS--FLVTTDSQKMKEAVGTMDFIIDTVS  251 (375)
T ss_pred             CCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH----hCCCcE--EEcCcCHHHHHHhhCCCcEEEECCC
Confidence            45788888865 6666666665 54 78898877543 33332    223221  111 010011000124788874211


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                           ....+....+.++++|+++....
T Consensus       252 ---------------------~~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        252 ---------------------AEHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             ---------------------cHHHHHHHHHhhcCCCEEEEEcc
Confidence                                 12356677888999999987654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.32  E-value=8.7  Score=27.29  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             EEEecCCC-Ch-hhHHHHhcCCCeEEEEECCHHHHHHHHHHHh-hcCCC-ceEEEEcc-cCCCCCCCCceeEEEeccccc
Q 028957            4 VLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGYK-EVKVLEAD-MLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         4 vLDlG~G~-G~-~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~-~~~~~-~i~~~~~d-~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |+=+|+|. |. ++..|++.+. +|..+.-.+ ..+..++.-- -.... +..+.... ..........+|+|+..-   
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v---   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV---   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe---
Confidence            45577775 43 3333334455 899999877 5555443210 00000 00111100 101011246799998631   


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                     ......++++.+.+.+.++..+++...
T Consensus        76 ---------------Ka~~~~~~l~~l~~~~~~~t~iv~~qN  102 (151)
T PF02558_consen   76 ---------------KAYQLEQALQSLKPYLDPNTTIVSLQN  102 (151)
T ss_dssp             ---------------SGGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred             ---------------cccchHHHHHHHhhccCCCcEEEEEeC
Confidence                           113557789999999999987776543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05854 short chain dehydrogenase; Provisional

Probab=83.11  E-value=10  Score=30.78  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+++|-.|+++ .++..+    ++.|. +|+.+..+.+..+.+.+.+.... -.++.++..|+.+..          -..
T Consensus        14 gk~~lITGas~-GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         14 GKRAVVTGASD-GLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35667666654 444444    44566 89999988776666655543321 125788889987632          112


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        92 ~~iD~li~nAG~  103 (313)
T PRK05854         92 RPIHLLINNAGV  103 (313)
T ss_pred             CCccEEEECCcc
Confidence            468998876543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.01  E-value=9.5  Score=30.50  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=49.6

Q ss_pred             cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +|.=+|+|.  |.++..+.+.+. +|+++|.+++.++.+.+.    +  .+.....+..   . ....|+|+..-     
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g--~~~~~~~~~~---~-~~~aDlVilav-----   65 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----G--LVDEASTDLS---L-LKDCDLVILAL-----   65 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----C--CcccccCCHh---H-hcCCCEEEEcC-----
Confidence            466678775  445555556665 899999999887776542    1  1111111111   1 23568888532     


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  115 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  115 (201)
                                   ......++++++...++++..+
T Consensus        66 -------------p~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         66 -------------PIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             -------------CHHHHHHHHHHHHHhCCCCcEE
Confidence                         2244567788888888776443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=82.85  E-value=14  Score=29.52  Aligned_cols=95  Identities=19%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce---EE-EEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV---KV-LEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i---~~-~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      ++|+=+|+|. | .++..+++.|. +|+.++.+++.++..++.    +. .+   .. ..............+|+|+..-
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GL-RLEDGEITVPVLAADDPAELGPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CC-cccCCceeecccCCCChhHcCCCCEEEEec
Confidence            3678889886 3 34444555565 899999877766555432    21 11   00 0000001011125689888531


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      -                  ......+++.+...+.++..++....
T Consensus        75 k------------------~~~~~~~~~~l~~~l~~~~~iv~~~n  101 (304)
T PRK06522         75 K------------------AYQLPAALPSLAPLLGPDTPVLFLQN  101 (304)
T ss_pred             c------------------cccHHHHHHHHhhhcCCCCEEEEecC
Confidence            1                  12356788888888887777665543

>PRK05867 short chain dehydrogenase; Provisional

Probab=82.60  E-value=8.4  Score=29.87  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      ++++|-.|+++|   .++..+++.|. +|++++.+++.++...+.+...+ .++..+..|+.+..     +     ..+.
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            457787776554   23333344566 89999998887777666655443 35677888876531     0     1246


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        87 id~lv~~ag~   96 (253)
T PRK05867         87 IDIAVCNAGI   96 (253)
T ss_pred             CCEEEECCCC
Confidence            7888866543

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=82.54  E-value=3.1  Score=35.03  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH-------HhhcC--CCceEEEEcccCCCC---CCCCce
Q 028957            2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQER-------LLLKG--YKEVKVLEADMLDLP---FSNDCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~-------~~~~~--~~~i~~~~~d~~~~~---~~~~~~   68 (201)
                      +...|+|+|-|.+...++.. +...-+|+++....-+.+..+       .+..|  ...+..+.++..+-.   .-....
T Consensus       194 D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~ea  273 (419)
T KOG3924|consen  194 DVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEA  273 (419)
T ss_pred             CcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcc
Confidence            45689999999999888766 344777888754444333332       22223  234667777765421   112456


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ++++++++.                -.+++..=+.++..-+++|.+++-.
T Consensus       274 tvi~vNN~~----------------Fdp~L~lr~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  274 TVIFVNNVA----------------FDPELKLRSKEILQKCKDGTRIISS  307 (419)
T ss_pred             eEEEEeccc----------------CCHHHHHhhHHHHhhCCCcceEecc
Confidence            788776553                1133344445888889999988744

>TIGR00518 alaDH alanine dehydrogenase

Probab=82.28  E-value=2.5  Score=35.47  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH
Q 028957            2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      .+|+-+|+|. |..+...+.. |. +|+.+|.+++..+.+...
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~  209 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAE  209 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHh
Confidence            5688888875 5555555544 55 899999998776655443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07904 short chain dehydrogenase; Provisional

Probab=82.26  E-value=7.3  Score=30.47  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHH-HHHHHHHHhhcCCCceEEEEcccCCCC---------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLEADMLDLP---------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~   66 (201)
                      +++||-.|++ |.++..+++    .+..+|++++.+++. ++.+.+.+...+..++.++..|+.+..         ...+
T Consensus         8 ~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          8 PQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            3567878775 445555543    442388898887664 555544444433336888999986532         1124


Q ss_pred             ceeEEEecc
Q 028957           67 CFDVVIEKA   75 (201)
Q Consensus        67 ~~D~v~~~~   75 (201)
                      ..|+++.+.
T Consensus        87 ~id~li~~a   95 (253)
T PRK07904         87 DVDVAIVAF   95 (253)
T ss_pred             CCCEEEEee
Confidence            688877543

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.15  E-value=22  Score=27.78  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=41.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHh----cCCCeEEEEECCH---HHHHHHHHHHhhcCCCceEEEEcccCCCC----------
Q 028957            1 MTSVLELGCGN-SRLSEGLYN----DGITAITCIDLSA---VAVEKMQERLLLKGYKEVKVLEADMLDLP----------   62 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~----~~~~~v~~vD~~~---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------   62 (201)
                      ++++|-.|+++ +.++..+++    .|. +|+.++.+.   +.++...+...  + .++.++..|+.+..          
T Consensus         7 ~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~~~v~~~~~~~~   82 (257)
T PRK08594          7 GKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSDEEITACFETIK   82 (257)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCHHHHHHHHHHHH
Confidence            46788888763 555555544    466 788776542   33333332221  1 35677888887532          


Q ss_pred             CCCCceeEEEeccc
Q 028957           63 FSNDCFDVVIEKAT   76 (201)
Q Consensus        63 ~~~~~~D~v~~~~~   76 (201)
                      -..+..|+++.+..
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            11257898886543

>PRK07677 short chain dehydrogenase; Provisional

Probab=82.05  E-value=10  Score=29.33  Aligned_cols=73  Identities=12%  Similarity=0.155  Sum_probs=45.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-C---------CCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-F---------SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~~   67 (201)
                      ++++|-.|++.|   .++..+++.|. +|++++.+....+.+.+.+...+ .++.++..|+.+.. .         ..+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            567887777554   13333444566 89999998877766665554333 36778888876521 0         1145


Q ss_pred             eeEEEecc
Q 028957           68 FDVVIEKA   75 (201)
Q Consensus        68 ~D~v~~~~   75 (201)
                      .|+++.+.
T Consensus        79 id~lI~~a   86 (252)
T PRK07677         79 IDALINNA   86 (252)
T ss_pred             ccEEEECC
Confidence            78888654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.88  E-value=22  Score=27.62  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             CCcEEEecCCC-ChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGN-SRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~   65 (201)
                      ++++|-.|+++ +.++..+    ++.|. +|+.++.+....+.+++. ..   .++.+++.|+.+..          -..
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-VD---EEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-cc---CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            46778788763 4444444    44566 788887764433332221 11   25677888887531          012


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        82 g~iD~lv~nAg~   93 (252)
T PRK06079         82 GKIDGIVHAIAY   93 (252)
T ss_pred             CCCCEEEEcccc
Confidence            568998876544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.80  E-value=2.9  Score=29.62  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             CCcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      ++++|=+|+|. | .....++..+..+++.+.-+.+..+...+.+..   ..+.+...+  ++.-....+|+|+....
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---~~~~~~~~~--~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---VNIEAIPLE--DLEEALQEADIVINATP   84 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---CSEEEEEGG--GHCHHHHTESEEEE-SS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---cccceeeHH--HHHHHHhhCCeEEEecC
Confidence            57899999875 2 233344455777899999998877666665522   245555443  22211357899997543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=81.78  E-value=18  Score=29.78  Aligned_cols=95  Identities=21%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccC----CC-C-CCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADML----DL-P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~----~~-~-~~~~~~D~v   71 (201)
                      |.+||-.|+|. |..+..+++. |..++++++.+++..+.+++    .+...+- ....+..    .+ . .....+|++
T Consensus       178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v  253 (361)
T cd08231         178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGADVV  253 (361)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence            35677777654 5555556665 44389999988876665542    2222111 1110000    00 0 123468988


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....                     -...+....+.|+++|+++....
T Consensus       254 id~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         254 IEASG---------------------HPAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             EECCC---------------------ChHHHHHHHHHhccCCEEEEEcC
Confidence            84211                     02356677789999999987653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=81.78  E-value=5.6  Score=30.29  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECC
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLS   32 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~   32 (201)
                      .+|+-+|||. | ..+..++..|..+++.+|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            6899999985 3 45555666787799999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=81.75  E-value=5.7  Score=32.15  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc-ccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~~~~~~D~v~~   73 (201)
                      |.+||=.|+  |.|..+..+++. |. ++++++.+++..+.+++    .+...+ ..... +... . ....+.+|+|+.
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d  213 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDCYFD  213 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence            467888874  347777777776 44 89999988887776643    232211 11110 1111 0 112246898884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...                      ...+....+.|+++|+++...
T Consensus       214 ~~G----------------------~~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       214 NVG----------------------GEFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CCC----------------------HHHHHHHHHHhCcCcEEEEec
Confidence            211                      124577788999999998764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=81.71  E-value=19  Score=29.00  Aligned_cols=91  Identities=22%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             CCcEEEecCC-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l   77 (201)
                      +.+||-.|+| .|..+..+++. |. ++++++.+++..+.+++ +   +...  ++...-.. .....+.+|+++.... 
T Consensus       163 ~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~-~---g~~~--~~~~~~~~~~~~~~~~~d~vi~~~~-  234 (330)
T cd08245         163 GERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK-L---GADE--VVDSGAELDEQAAAGGADVILVTVV-  234 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-h---CCcE--EeccCCcchHHhccCCCCEEEECCC-
Confidence            3567888876 35555555555 54 89999998887777643 2   1111  11110000 0001235888874211 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                          ....+..+.+.|+++|+++...
T Consensus       235 --------------------~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         235 --------------------SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             --------------------cHHHHHHHHHhcccCCEEEEEC
Confidence                                0235677788999999988764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02494 adenosylhomocysteinase

Probab=81.69  E-value=7.6  Score=33.73  Aligned_cols=88  Identities=13%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|+-+|+|. |......++. |. +|+++|.++.....+..    .+.   .+.  ++...   -...|+|+....- 
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~---~vv--~leEa---l~~ADVVI~tTGt-  319 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY---QVL--TLEDV---VSEADIFVTTTGN-  319 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC---eec--cHHHH---HhhCCEEEECCCC-
Confidence            57889999886 5444444443 45 89999998765433322    121   111  22111   1346988863211 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                         ..-+..+..+.||+||.++.+...
T Consensus       320 -------------------~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        320 -------------------KDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             -------------------ccchHHHHHhcCCCCCEEEEcCCC
Confidence                               111346778899999999877653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.45  E-value=4.8  Score=32.20  Aligned_cols=92  Identities=22%  Similarity=0.353  Sum_probs=54.9

Q ss_pred             cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH-------hhcC-C---------CceEEEEcccCCCCC
Q 028957            3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-------LLKG-Y---------KEVKVLEADMLDLPF   63 (201)
Q Consensus         3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~-------~~~~-~---------~~i~~~~~d~~~~~~   63 (201)
                      +|--+|+|.  +.++..++..+. +|+++|.+++.++.+++++       ...+ .         .++.+ ..|...   
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence            566788875  455666666676 8999999999887554322       2222 1         02221 223211   


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                       ....|+|+..-.                +.......+++++.+.++++..+.
T Consensus        80 -~~~aDlVi~av~----------------e~~~~k~~~~~~l~~~~~~~~il~  115 (282)
T PRK05808         80 -LKDADLVIEAAT----------------ENMDLKKKIFAQLDEIAKPEAILA  115 (282)
T ss_pred             -hccCCeeeeccc----------------ccHHHHHHHHHHHHhhCCCCcEEE
Confidence             244688885211                223445689999999998876653

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.26  E-value=25  Score=27.86  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             CCcEEEecCCC-ChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGN-SRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~   65 (201)
                      ++.+|-.|+++ +.++..++    +.|. +|+.++.+....+.+++.....+. . .+++.|+.+..          -..
T Consensus         5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~~   81 (274)
T PRK08415          5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKDL   81 (274)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence            46788888752 44554444    4566 888888875432333322222221 2 56778887632          113


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        82 g~iDilVnnAG~   93 (274)
T PRK08415         82 GKIDFIVHSVAF   93 (274)
T ss_pred             CCCCEEEECCcc
Confidence            578998877554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.22  E-value=7.7  Score=30.70  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             hHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCc
Q 028957           15 SEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPE   93 (201)
Q Consensus        15 ~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~   93 (201)
                      +..+.+.++. +|+++|.++..++.+.+.    ++  +.-...+...+    ..+|+|+..-                  
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~--~~~~~~~~~~~----~~~Dlvvlav------------------   53 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GI--IDEASTDIEAV----EDADLVVLAV------------------   53 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS--SSEEESHHHHG----GCCSEEEE-S------------------
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC--eeeccCCHhHh----cCCCEEEEcC------------------
Confidence            4556667754 999999999988888643    21  11122221111    3459998643                  


Q ss_pred             cHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           94 TVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        94 ~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +.....++++++...+++|+.+.=+.
T Consensus        54 P~~~~~~~l~~~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen   54 PVSAIEDVLEEIAPYLKPGAIVTDVG   79 (258)
T ss_dssp             -HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred             CHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence            33667899999999998887766443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06172 short chain dehydrogenase; Provisional

Probab=81.08  E-value=12  Score=29.00  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus         7 ~k~ilItGas-~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          7 GKVALVTGGA-AGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3577777764 4444444    44465 89999998877766665554433 36788888887531     0     113


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        84 ~id~li~~ag   93 (253)
T PRK06172         84 RLDYAFNNAG   93 (253)
T ss_pred             CCCEEEECCC
Confidence            5788886544

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=80.91  E-value=5.3  Score=32.68  Aligned_cols=92  Identities=18%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc---c-CCC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---M-LDL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d---~-~~~-~~~~~~~D~v~~   73 (201)
                      +.+||-.|+|. |..+..+++. |.+.|++++.+++....+.+ +   +..  .++...   . ..+ ....+.+|+++.
T Consensus       176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~--~~~~~~~~~~~~~~~~~~~~~~d~vid  249 (350)
T cd08240         176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---GAD--VVVNGSDPDAAKRIIKAAGGGVDAVID  249 (350)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCc--EEecCCCccHHHHHHHHhCCCCcEEEE
Confidence            35677777654 5555555555 55478899988877766643 2   221  111111   0 000 011125888885


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...                     ....+....+.|+++|+++...
T Consensus       250 ~~g---------------------~~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         250 FVN---------------------NSATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             CCC---------------------CHHHHHHHHHHhhcCCeEEEEC
Confidence            211                     0235777888899999988654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=80.85  E-value=6.7  Score=31.97  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=52.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C--CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L--PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~~~~~~D~v~~~   74 (201)
                      |.+||-.|+|. |..+..+++. |..++++++.+++..+.+++.    +...+ .....+... +  ......+|+|+..
T Consensus       164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~  239 (341)
T PRK05396        164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGLEM  239 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence            35666667654 5555566655 443688888777666555432    22111 011111100 0  0123467888842


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..                     ....+..+.+.|+++|.++.....
T Consensus       240 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~  265 (341)
T PRK05396        240 SG---------------------APSAFRQMLDNMNHGGRIAMLGIP  265 (341)
T ss_pred             CC---------------------CHHHHHHHHHHHhcCCEEEEEecC
Confidence            11                     124667778899999999887543

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=80.75  E-value=9.5  Score=27.28  Aligned_cols=72  Identities=19%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             cEEEecCCCChhhHHH----HhcCCCeEEEEECC--HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            3 SVLELGCGNSRLSEGL----YNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      ++|=.|+++ .++..+    ++.+...|+.+..+  .+..+.....++..+ .++.+++.|+.+..          ...+
T Consensus         2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    2 TVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCC-HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            566677664 444444    44555588899888  666666666666555 58899999977532          1235


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        80 ~ld~li~~ag   89 (167)
T PF00106_consen   80 PLDILINNAG   89 (167)
T ss_dssp             SESEEEEECS
T ss_pred             cccccccccc
Confidence            7899886544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=80.67  E-value=15  Score=30.37  Aligned_cols=93  Identities=20%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc---ccC-CC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DML-DL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~-~~-~~~~~~~D~v~~   73 (201)
                      +++||-.|+|. |..+..+++. |...+++++.++...+.+++.    +..  .++..   +.. .+ ......+|+|+.
T Consensus       187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~--~~i~~~~~~~~~~v~~~~~~~~d~vld  260 (365)
T cd08278         187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT--HVINPKEEDLVAAIREITGGGVDYALD  260 (365)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc--EEecCCCcCHHHHHHHHhCCCCcEEEE
Confidence            35677777654 5666666665 554799999988777666542    211  11111   110 00 011345888884


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ....                     ...+..+.+.|+++|+++....
T Consensus       261 ~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         261 TTGV---------------------PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             CCCC---------------------cHHHHHHHHHhccCCEEEEeCc
Confidence            2110                     2356777888999999887643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=80.66  E-value=22  Score=28.57  Aligned_cols=87  Identities=20%  Similarity=0.147  Sum_probs=49.1

Q ss_pred             CcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+||-.|||. |..+..+++....++++++.+.+..+.+++    .+..  .++..  ...  +...+|+++....    
T Consensus       169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~--~~~--~~~~vD~vi~~~~----  234 (329)
T cd08298         169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD--WAGDS--DDL--PPEPLDAAIIFAP----  234 (329)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc--EEecc--Ccc--CCCcccEEEEcCC----
Confidence            4666676654 444444444422388888888876666633    2221  11111  111  2345788774211    


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                       ....++.+.+.|+++|+++...
T Consensus       235 -----------------~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         235 -----------------VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             -----------------cHHHHHHHHHHhhcCCEEEEEc
Confidence                             1246788899999999988764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=80.60  E-value=6.5  Score=32.36  Aligned_cols=95  Identities=19%  Similarity=0.286  Sum_probs=57.9

Q ss_pred             CCcEEEecCCC--ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C-CCC-CCceeEEEe
Q 028957            1 MTSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-PFS-NDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~-~~~-~~~~D~v~~   73 (201)
                      |.+||-.|+..  |.++.++++. |. .++++--+++-.+.+++.    +.+. +.+...|+.. . ... ...+|+|+.
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D  217 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVDVVLD  217 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence            46788888533  6788888877 44 666776666655544433    3222 2333443322 1 122 236999996


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .-.                      ...+.+..+.|+++|+++.+....
T Consensus       218 ~vG----------------------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         218 TVG----------------------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCC----------------------HHHHHHHHHHhccCCEEEEEecCC
Confidence            321                      356677888999999998876544

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.57  E-value=13  Score=28.73  Aligned_cols=73  Identities=15%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      +++||-.|+ +|.++..+    +..|. +|++++.++...+.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus         5 ~k~vlItGa-~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          5 GKVVVVSGV-GPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            356776765 44454444    44566 89999998877766665554333 35788888886531     0     114


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        82 ~~d~vi~~ag   91 (258)
T PRK07890         82 RVDALVNNAF   91 (258)
T ss_pred             CccEEEECCc
Confidence            5788886543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.55  E-value=13  Score=28.86  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      ++++|-.|+ +|.++..++    +.|. +|++++.+++.++...+.+...+ .++.++..|+.+..          -..+
T Consensus        11 ~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124         11 GQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            467777775 444454444    4466 89999998877766665554433 25778888876531          0124


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      +.|.++.+..
T Consensus        88 ~id~vi~~ag   97 (256)
T PRK06124         88 RLDILVNNVG   97 (256)
T ss_pred             CCCEEEECCC
Confidence            5788886543

>PRK06125 short chain dehydrogenase; Provisional

Probab=80.49  E-value=13  Score=28.93  Aligned_cols=74  Identities=18%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~D~   70 (201)
                      ++++|=.|++. .++..+    +..|. +|++++.+++..+.+.+.+....-.++.++..|+.+..     + ..+..|+
T Consensus         7 ~k~vlItG~~~-giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          7 GKRVLITGASK-GIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            35677777644 444444    44566 89999998887776665554332235778888876521     0 1246788


Q ss_pred             EEeccc
Q 028957           71 VIEKAT   76 (201)
Q Consensus        71 v~~~~~   76 (201)
                      ++.+..
T Consensus        85 lv~~ag   90 (259)
T PRK06125         85 LVNNAG   90 (259)
T ss_pred             EEECCC
Confidence            886543

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=80.46  E-value=14  Score=30.16  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccC----CCCC-----CCCc
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADML----DLPF-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~----~~~~-----~~~~   67 (201)
                      ++|--+|+|+ | .++..++..|. .|+..|++++.++.++......-   ..+-.....+..    .+..     .-..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~   82 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD   82 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence            4677788887 3 34444455446 89999999999887777554321   001011111100    0000     1134


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .|+|+-.     +           +++.+-.+++++++-++++|+..+--.+.
T Consensus        83 ~DlVIEA-----v-----------~E~levK~~vf~~l~~~~~~~aIlASNTS  119 (307)
T COG1250          83 ADLVIEA-----V-----------VEDLELKKQVFAELEALAKPDAILASNTS  119 (307)
T ss_pred             CCEEEEe-----c-----------cccHHHHHHHHHHHHhhcCCCcEEeeccC
Confidence            5777742     2           15567788999999999999877665443

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.36  E-value=24  Score=27.05  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCH-HHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|-.|+. |.++..++    ..|. +|++++.+. ...+.....+...+ .++.++.+|+.+..     +     ..
T Consensus         6 ~k~vlItGas-ggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          6 GKTALVTGSS-RGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CcEEEEECCC-CcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            3678877764 44444444    3465 788877653 33343333333322 25678888887632     0     01


Q ss_pred             CceeEEEeccccceeeecCCCCCCC-CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNP-QPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......   ....|.. -.-+......+++.+.+.++.+|++++...
T Consensus        83 ~~~d~vi~~ag~~~~---~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         83 GGLDALVLNASGGME---SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCcEEEECCCCCCC---CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            357887755432110   0000000 001122245677777777766777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	201
2pxx_A	215	Human Putative Methyltransferase Mgc2408 Length = 2		4e-26
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		1e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		1e-04

>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
           +L LGCGNS LS  L+  G   +T +D S+V V  MQ       Y  V  L  + +D   
Sbjct: 46  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ-----ACYAHVPQLRWETMDVRK 100
Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
           L F +  FDVV+EK T++ L     DPW    E V  V  +L  V RVL P G FIS++ 
Sbjct: 101 LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160
Query: 121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADE 165
             PHFR   +    + WS+   T+G GFH+  Y++ KG + S  +
Sbjct: 161 AAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLSVAQ 205

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 2   TSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
             VLE GCG    +  L  +   A IT ID+S  ++EK +E     G K VK L+A++  
Sbjct: 39  AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
           LPF +  FD +     +E L           PE        L+ + +VLKP G
Sbjct: 99  LPFEDSSFDHIFVCFVLEHL---------QSPEEA------LKSLKKVLKPGG 136

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 19/110 (17%)
Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++GCG+   +  L   G  A+  +D+S V ++K +ER       ++  ++ D+  LPF
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKAVG-VDISEVXIQKGKER---GEGPDLSFIKGDLSSLPF 112
Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
            N+ F+ +    ++E         W  +P      +  L  + RVLK DG
Sbjct: 113 ENEQFEAIXAINSLE---------WTEEP------LRALNEIKRVLKSDG 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-20
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-16
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-15
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-15
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-15
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-14
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-14
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	4e-14
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-14
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	7e-14
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-13
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-13
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-13
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	3e-13
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-13
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	5e-13
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	7e-13
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	8e-13
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	8e-13
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-12
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-12
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	5e-12
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-12
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	8e-12
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-12
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-12
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	9e-12
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-11
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-11
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-11
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-11
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-11
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	5e-11
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-11
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	8e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-10
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-10
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-10
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	3e-10
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-10
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-10
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	9e-10
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	9e-10
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-09
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-09
3lcc_A	235	Putative methyl chloride transferase; halide methy	4e-09
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-08
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	1e-08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	5e-08
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	7e-08
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	2e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-06
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	2e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	6e-06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-05
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	4e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	6e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-04
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	7e-04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	8e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score =  175 bits (445), Expect = 6e-56
 Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            +L LGCGNS LS  L+  G   +T +D S+V V  MQ         +++    D+  L 
Sbjct: 45  RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY--AHVPQLRWETMDVRKLD 102

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F +  FDVV+EK T++ L     DPW    E V  V  +L  V RVL P G FIS++   
Sbjct: 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADE 165
           PHFR   +    + WS+   T+G GFH+  Y++ KG + S  +
Sbjct: 163 PHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLSVAQ 205

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 83.4 bits (206), Expect = 3e-20
 Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 15/173 (8%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           +VL+ G G       ++ +       I++S + ++K +       +K + + + D+  LP
Sbjct: 26  TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK-LNISKGDIRKLP 84

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F ++    V    +   +F         + +        ++ + RVLKP GL        
Sbjct: 85  FKDESMSFVY---SYGTIF------HMRKNDVK----EAIDEIKRVLKPGGLACINFLTT 131

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPL 175
              R               +  G+   + +  L +  +   D ++    D+ +
Sbjct: 132 KDERYNKGE-KIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVV 183

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 27/150 (18%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           +VL+LGCG           G   +  IDLS   + + + +        V   +  + D+ 
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT---TSPVVCYEQKAIEDIA 103

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
              D ++VV+   +   L       +    + +       + V+  LK  G FI   F  
Sbjct: 104 IEPDAYNVVL---SSLAL------HYIASFDDI------CKKVYINLKSSGSFI---FSV 145

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFF 152
            H   P F A        W T   G    +
Sbjct: 146 EH---PVFTADGRQD---WYTDETGNKLHW 169

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 22/142 (15%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L++G G  R +  L + G   I  ++ +   VE  ++      +  V      + DL  
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQ-IEGLEPATRLVELARQT-----HPSVTFHHGTITDLSD 98

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
           S   +  ++  A   ++ +  G+               L  +   ++  G  + +SF   
Sbjct: 99  SPKRWAGLL--AWYSLIHMGPGELP-----------DALVALRMAVEDGGGLL-MSFFSG 144

Query: 124 HFRRPFFNA--PQFTWSVEWIT 143
               P ++     + W +  + 
Sbjct: 145 PSLEPMYHPVATAYRWPLPELA 166

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            +L+ GCG  R+   L   G   +   DL  + ++  ++      + E + +  D+    
Sbjct: 49  KILDAGCGQGRIGGYLSKQGHD-VLGTDLDPILIDYAKQD-----FPEARWVVGDLSVDQ 102

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
            S   FD+++   +   +            +        L  +HR L  DG  + + FG 
Sbjct: 103 ISETDFDLIV---SAGNVM------GFLAEDGREPA---LANIHRALGADGRAV-IGFGA 149

Query: 123 PH 124
             
Sbjct: 150 GR 151

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 70.3 bits (172), Expect = 3e-15
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL+L CG    S  L + G   +  +D+S   + K +E    +    V+ +  D   L F
Sbjct: 42  VLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSF 99

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  FD VI    ++ +            E    +  + + V RVLKP G FI + F   
Sbjct: 100 EDKTFDYVI---FIDSIV------HFEPLE----LNQVFKEVRRVLKPSGKFI-MYFTDL 145

Query: 124 HFRRPFFNAPQFTWSVEWITF 144
               P            WI+ 
Sbjct: 146 RELLPRLKESLVVGQKYWISK 166

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 69.8 bits (171), Expect = 7e-15
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 27/150 (18%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            +++LGCG        +  G + +  +DLS   + + +      G   +    AD+  L 
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG---ITYERADLDKLH 102

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
              D FD+     +   L       +            +   VH+ L P G F+   F  
Sbjct: 103 LPQDSFDLAY---SSLAL------HYVEDVA------RLFRTVHQALSPGGHFV---FST 144

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFF 152
            H   P + AP       W    +G   + 
Sbjct: 145 EH---PIYMAP---ARPGWAIDAEGRRTWP 168

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 26/153 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL++GC +  L   +  +G   ++ I+    A E+ +E+L       V + + + +D+P
Sbjct: 35  EVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQAKEKLD-----HVVLGDIETMDMP 88

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISV-SF 120
           +  + FD VI     +VL            E +    A++E V   +K +G +  S+ + 
Sbjct: 89  YEEEQFDCVI---FGDVL------------EHLFDPWAVIEKVKPYIKQNGVILASIPNV 133

Query: 121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY 153
                  P        W+       D  H  F+
Sbjct: 134 SHISVLAPLLAG---NWTYTEYGLLDKTHIRFF 163

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           + LE+GC     +E L       +T ID+   A+ +  +R   K +  +     D+L   
Sbjct: 54  NGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQR--TKRWSHISWAATDILQFS 110

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFG 121
            + + FD+++     EVL+      +      +      ++ + ++L P G L       
Sbjct: 111 TA-ELFDLIV---VAEVLY------YLEDMTQMRTA---IDNMVKMLAPGGHLVFG---- 153

Query: 122 QPHFRRPFFNAPQFTWSVEWI--TFGDGFHYFFYILRKGKRSSADEELSQ 169
               R             E +     +       +  +G+ +  D  L++
Sbjct: 154 --SARDATCRRWGHVAGAETVITILTEALTEVERVQCQGQSADEDCLLAR 201

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 19/124 (15%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++GCG+   +  L   G      +D+S V ++K +ER       ++  ++ D+  LPF
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYK-AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF 112

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            N+ F+ ++    +  L       W  +P         L  + RVLK DG       G  
Sbjct: 113 ENEQFEAIM---AINSLE------WTEEPLRA------LNEIKRVLKSDGYACIAILGPT 157

Query: 124 HFRR 127
              R
Sbjct: 158 AKPR 161

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 20/151 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           +VLE G G   L+  L   G T +  I+ S       +E+L     KE  + E D L   
Sbjct: 48  NVLEFGVGTGNLTNKLLLAGRT-VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFE 102

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
                 D ++                    E        +    ++L   G  +  +   
Sbjct: 103 VPTS-IDTIVSTYAFH---------HLTDDE----KNVAIAKYSQLLNKGGKIV-FADTI 147

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFY 153
              +  +    +      +    +     +Y
Sbjct: 148 FADQDAYDKTVEAAKQRGFHQLANDLQTEYY 178

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 67.2 bits (164), Expect = 7e-14
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
            VLE GCG    +  L  +   A IT ID+S  ++EK +E     G K VK L+A++  L
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           PF +  FD +       VL  +   P              L+ + +VLKP G   
Sbjct: 100 PFEDSSFDHIF---VCFVL-EHLQSP-----------EEALKSLKKVLKPGGTIT 139

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VLEL  G    +  L       +T +D SA  + +        G   V+  + D+ D  
Sbjct: 49  DVLELASGTGYWTRHLSGLADR-VTALDGSAEMIAEAGRH----GLDNVEFRQQDLFDWT 103

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             +  +D V       +  V    P +          A  E V   + P G+        
Sbjct: 104 P-DRQWDAVF--FAHWLAHV----PDDRFE-------AFWESVRSAVAPGGVVE-FVDVT 148

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHY 150
            H RR               T  DG  +
Sbjct: 149 DHERRLEQQDDSEPEVAVRRTLQDGRSF 176

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           + ++G G    S  L N G+  +  ++ S V  ++           +V+       +L  
Sbjct: 38  IADIGAGTGGYSVALANQGLF-VYAVEPSIVMRQQAVVHP------QVEWFTGYAENLAL 90

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +   D VI    +               E         + + R+++   + + ++F   
Sbjct: 91  PDKSVDGVISILAIH---------HFSHLE------KSFQEMQRIIRDGTIVL-LTFDIR 134

Query: 124 HFRRPFFN 131
             +R +  
Sbjct: 135 LAQRIWLY 142

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
             +E+G G  R +  L          ++ S    E  ++R        V VL+    +LP
Sbjct: 50  RGVEIGVGTGRFAVPLKI-----KIGVEPSERMAEIARKR-------GVFVLKGTAENLP 97

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             ++ FD  +    +  +              V      L+  +R+LK  G  I     +
Sbjct: 98  LKDESFDFAL---MVTTI------------CFVDDPERALKEAYRILKKGGYLIVGIVDR 142

Query: 123 PHFRRPFF 130
             F    +
Sbjct: 143 ESFLGREY 150

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 17/114 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
           + ++GCG    +  L       +T +D  +  ++         G +  V  +   M DLP
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           F N+  D++  +  +          +N   E        L    + LK  G   
Sbjct: 110 FRNEELDLIWSEGAI----------YNIGFE------RGLNEWRKYLKKGGYLA 147

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 16/142 (11%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            + ++GCG    +  L  D    +T +DLS   +E  QE+ +      V     DM +L 
Sbjct: 36  RIADIGCGTGTATLLL-ADHYE-VTGVDLSEEMLEIAQEKAMETNRH-VDFWVQDMRELE 92

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
                  + I   ++  L            +T   V    +   R+L   G  +      
Sbjct: 93  LPEPVDAITILCDSLNYL------------QTEADVKQTFDSAARLLTDGGKLL-FDVHS 139

Query: 123 PHFRRPFFNAPQFTWSVEWITF 144
           P+     FN   +    E  ++
Sbjct: 140 PYKMETLFNGKTYATHAEQSSY 161

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
             L+L CG   L+E L          +DLS   + + + +   +G K  ++   D+ +L 
Sbjct: 40  DYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRSQGLK-PRLACQDISNLN 97

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             N  FD++              D  N        +    + V   LK  G+FI      
Sbjct: 98  I-NRKFDLIT----------CCLDSTNYII-DSDDLKKYFKAVSNHLKEGGVFI-FDINS 144

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHY 150
            +          F +  + + +     +
Sbjct: 145 YYKLSQVLGNNDFNYDDDEVFYYWENQF 172

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 64.6 bits (157), Expect = 7e-13
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 24/164 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
            LELG G  R++  L   G      +D  A  +E  ++++     K V+V++AD   +P 
Sbjct: 43  FLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK-VQVVQADARAIPL 100

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            ++    VI    + +          P    V      L    RVLKP G  +       
Sbjct: 101 PDESVHGVI---VVHLWH------LVPDWPKV------LAEAIRVLKPGGALLEGWDQAE 145

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL 167
                   +P++T    W  F     +        KR    EE 
Sbjct: 146 A-------SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEA 182

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 64.0 bits (156), Expect = 8e-13
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 42/186 (22%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADM 58
           +L++GCG+ ++S  L + G + +T ID+++ A+   +      G       + +    + 
Sbjct: 34  ILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFIS 117
             L F +  FD  +       L        + P P+  +++   ++ V RVLKP      
Sbjct: 93  SSLSFHDSSFDFAV---MQAFL-------TSVPDPKERSRI---IKEVFRVLKPGAYLYL 139

Query: 118 VSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK-GKRSSADEELSQSHDKPLV 176
           V FGQ           +               + F I ++ G   + D E          
Sbjct: 140 VEFGQN-------WHLKLYRKRYL--------HDFPITKEEGSFLARDPE------TGET 178

Query: 177 PTISMF 182
             I+  
Sbjct: 179 EFIAHH 184

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 63.4 bits (154), Expect = 8e-13
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L L  G  R +  L + G   +T +D S+V + K ++    KG  ++  +++++ D   
Sbjct: 33  ILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI 90

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF--G 121
             D ++ ++         +    P + + +       +   V++ LKP G+FI   F   
Sbjct: 91  VADAWEGIV--------SIFCHLPSSLRQQ-------LYPKVYQGLKPGGVFILEGFAPE 135

Query: 122 QPHFRRPFFNAPQFTWSVEWI 142
           Q  +             +E +
Sbjct: 136 QLQYNTGGPKDLDLLPKLETL 156

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 64.5 bits (156), Expect = 1e-12
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 24/161 (14%)

Query: 2   TSVLELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQERLLLK------GYKEVKV 53
           +++++ GCG+  L + L  Y   +  I  +D+S   + +  + L +K        K   +
Sbjct: 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL 782

Query: 54  LEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
            +  +L+        D+      +E            + +         E V  +  P  
Sbjct: 783 YDGSILEFDSRLHDVDIGTCLEVIE---------HMEEDQ----ACEFGEKVLSLFHPKL 829

Query: 114 LFISV---SFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYF 151
           L +S     F     R       +     +   F +  H F
Sbjct: 830 LIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKF 870

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 17/131 (12%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL 61
           + +++G G   LS  L      +I  +D S    E   + +      + +++++ D+ ++
Sbjct: 46  TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSF 120
           P  ++  D+++   +   +F    D             A  E ++R+LK  G  +I   F
Sbjct: 106 PIEDNYADLIV---SRGSVF-FWED----------VATAFRE-IYRILKSGGKTYIGGGF 150

Query: 121 GQPHFRRPFFN 131
           G    R     
Sbjct: 151 GNKELRDSISA 161

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 28/174 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           S+L++ CG       L +   T +  ++LSA  +   + R       +  +   DM D  
Sbjct: 53  SLLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRRN-----PDAVLHHGDMRDFS 106

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI------ 116
                F  V                         ++ A LE     + PDG+ +      
Sbjct: 107 L-GRRFSAVT----------CMFSSIGHLA-GQAELDAALERFAAHVLPDGVVVVEPWWF 154

Query: 117 SVSFGQPHFRRPFFNAPQFTWSVEWITFGDG----FHYFFYILRKGKRSSADEE 166
             +F   +       A   T +    +  +G        + +    +  +  EE
Sbjct: 155 PENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEE 208

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 33/174 (18%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEADM 58
            VLEL  G  RL+    + G   +T ++LS    A   +++ E       +   +++ DM
Sbjct: 85  PVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDR-CTLVQGDM 142

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWN--PQPETVTKVMAMLEGVHRVLKPDGLFI 116
                 +  F  V          V S    N   + +       +   V   L+P G F+
Sbjct: 143 SAFAL-DKRFGTV----------VISSGSINELDEAD----RRGLYASVREHLEPGGKFL 187

Query: 117 ---------SVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHY-FFYILRKGKR 160
                         +     P  +  ++   V  +   +               
Sbjct: 188 LSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDP 241

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 61.0 bits (148), Expect = 6e-12
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
            L+LGCGN R S  L  +G   +   D +A+++  ++    ++    +     D+ +L F
Sbjct: 36  TLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQ 122
               +D ++    +  L          + +T+  +   +  + R  KP G   I  +   
Sbjct: 95  DR-QYDFILSTVVLMFL----------EAKTIPGL---IANMQRCTKPGGYNLIVAAMDT 140

Query: 123 PHFRRP 128
             +   
Sbjct: 141 ADYPCT 146

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 23/183 (12%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           S+L++ CG     E    +       ++LS   +   ++RL      +  + + DM D  
Sbjct: 43  SLLDVACGTGTHLEHFTKEFGD-TAGLELSEDMLTHARKRL-----PDATLHQGDMRDFR 96

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
                F  V+  +    +            +T  ++ A +      L+P G+ +      
Sbjct: 97  L-GRKFSAVV--SMFSSVGYL---------KTTEELGAAVASFAEHLEPGGVVV---VEP 141

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 182
             F   F +       V     G       + +R+G  +  +   + +     V   S  
Sbjct: 142 WWFPETFADGWVSADVVRR--DGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDV 199

Query: 183 HEE 185
           H  
Sbjct: 200 HLI 202

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
             +L+LG G   LS  L      A  T +D+S   +E  + R   +G  +VK +EAD   
Sbjct: 46  PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF--RGNLKVKYIEADYSK 103

Query: 61  LPFSNDCFDVVIEKATMEVL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119
             F  + +D+V+   +   +  +   D              + +  + +LK  G+FI+  
Sbjct: 104 YDF-EEKYDMVV---SALSIHHLEDEDKK-----------ELYKRSYSILKESGIFINAD 148

Query: 120 FGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDK 173
                    F      T   +++           I    +RS  D+++  +   
Sbjct: 149 LVHGE--TAFIENLNKTIWRQYVENSGLTEEE--IAAGYERSKLDKDIEMNQQL 198

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 61.4 bits (149), Expect = 8e-12
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
           + ++GCG    +  L +     IT IDL    +E   E  +     + VK +   M +LP
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           F N+  D++      E    N G                +    + LK  G   
Sbjct: 110 FQNEELDLIW----SEGAIYNIGFE------------RGMNEWSKYLKKGGFIA 147

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 61.0 bits (148), Expect = 9e-12
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 22/151 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL+LGCG   L   L + GI A   +D     V+  +              +     +P 
Sbjct: 56  VLDLGCGEGWLLRALADRGIEA-VGVDGDRTLVDAARAAGA-GEVHLASYAQLAEAKVPV 113

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
             D +D++        L        +     +      L  +  +L P G  + +    P
Sbjct: 114 GKD-YDLIC---ANFAL-------LHQDIIEL------LSAMRTLLVPGGALV-IQTLHP 155

Query: 124 HF--RRPFFNAPQFTWSVEWITFGDGFHYFF 152
                  + +  +      +        ++F
Sbjct: 156 WSVADGDYQDGWREESFAGFAGDWQPMPWYF 186

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL+L CG    +  L   G   +  +DL    +   + +   +  K ++ L+ D+L++ 
Sbjct: 44  RVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           F  + FD V                          +  +   V   LKP G+FI
Sbjct: 102 F-KNEFDAVT----------MFFSTIMYF--DEEDLRKLFSKVAEALKPGGVFI 142

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 29/144 (20%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL+LG G  + S  L   G   +  +D S   +E  +E+          V+EA   DLPF
Sbjct: 58  VLDLGGGTGKWSLFLQERGFE-VVLVDPSKEMLEVAREKG------VKNVVEAKAEDLPF 110

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  F+ V+            GD  +     V         + RVL PDGL I  +    
Sbjct: 111 PSGAFEAVL----------ALGDVLS----YVENKDKAFSEIRRVLVPDGLLI-ATVDNF 155

Query: 124 H-------FRRPFFNAPQFTWSVE 140
           +        +  +    +F  +  
Sbjct: 156 YTFLQQMIEKDAWDQITRFLKTQT 179

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++G G    +             +D +   VE        KG + V+  +     LPF
Sbjct: 25  VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 83

Query: 64  SNDCFDVVIEKATMEVLFV--NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
            +D FD++         +   +  D             A+ E V RVLK DG F+ V   
Sbjct: 84  PDDSFDIIT------CRYAAHHFSDV----------RKAVRE-VARVLKQDGRFLLVDHY 126

Query: 122 QPH 124
            P 
Sbjct: 127 APE 129

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 59.1 bits (143), Expect = 3e-11
 Identities = 33/142 (23%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            +LELGCG    +E +   G       D S     +   RL         V       L 
Sbjct: 46  KILELGCGAGYQAEAMLAAGFDV-DATDGSPELAAEASRRL------GRPVRTMLFHQLD 98

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
              D +D V   A +            P+ E    +  +L+ + R LKP GLF   S+  
Sbjct: 99  A-IDAYDAVWAHACL---------LHVPRDE----LADVLKLIWRALKPGGLFY-ASYKS 143

Query: 123 PHFRRPFFNAPQFT-WSVEWIT 143
                    A  +   S EW+ 
Sbjct: 144 GEGEGRDKLARYYNYPSEEWLR 165

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 2   TSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGY-----KEVKVLE 55
             V++LGCG   L   L  D     IT +D+S   +E+ ++RL +        K + + +
Sbjct: 31  KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ 90

Query: 56  ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
           + ++        +D       +EV+          +      + A  + +    +P  + 
Sbjct: 91  SSLVYRDKRFSGYDAAT---VIEVIE------HLDENR----LQAFEKVLFEFTRPQTVI 137

Query: 116 ISV 118
           +S 
Sbjct: 138 VST 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 25/126 (19%)

Query: 4   VLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML 59
           VL++G G       LS+ +   G   +  ID+    V    E++   G K V+VL+++  
Sbjct: 41  VLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN 98

Query: 60  DLPFSNDCFDVVIEKATMEVLFV--NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
            +P  ++  D +       + F      +P           +  LE + RV KP      
Sbjct: 99  KIPLPDNTVDFIF------MAFTFHELSEP-----------LKFLEELKRVAKPFAYLAI 141

Query: 118 VSFGQP 123
           + + + 
Sbjct: 142 IDWKKE 147

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL++  G   ++          +   DL+   ++  +  +   G+++V+ ++ D   +P
Sbjct: 40  EVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F+++ F +V                 +          + +   +RVLK  G  + V    
Sbjct: 99  FTDERFHIVT------CRIA----AHH-----FPNPASFVSEAYRVLKKGGQLLLVDNSA 143

Query: 123 P 123
           P
Sbjct: 144 P 144

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 58.5 bits (141), Expect = 8e-11
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 5   LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS 64
           L+ G G  R+++ L       +  +D++   + + +  L  +G +        + D    
Sbjct: 84  LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE 143

Query: 65  NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
            D +DV+  +  +  L                     L      L+P+G+ +
Sbjct: 144 PDSYDVIWIQWVIGHL---------TDQHLA----EFLRRCKGSLRPNGIIV 182

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 35/149 (23%), Positives = 50/149 (33%), Gaps = 21/149 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
           VL++GCG  + +  L       +T I +S   V +   R    G    V    AD +DLP
Sbjct: 65  VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
           F +  FD V     +E    +  D               L  + RVL+P G      F  
Sbjct: 125 FEDASFDAVW---ALES-LHHMPDR-----------GRALREMARVLRPGGTVAIADFVL 169

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYF 151
                P         +V+    G G    
Sbjct: 170 ---LAPV--EGAKKEAVDAFRAGGGVLSL 193

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L+LGCG  +L+E +   G   +   D +A  +EK ++      Y  +    AD  +   
Sbjct: 61  ILDLGCGTGQLTEKIAQSGAE-VLGTDNAATMIEKARQN-----YPHLHFDVADARNFRV 114

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
                D V         F N+   W  +PE        +  +H+ LK  G F+   FG  
Sbjct: 115 DK-PLDAV---------FSNAMLHWVKEPEAA------IASIHQALKSGGRFV-AEFGGK 157

Query: 124 HFRRPFFNA 132
              +    A
Sbjct: 158 GNIKYILEA 166

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 18/140 (12%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           + VL++G G       +          ID+ +  V    ER+   G  ++     D+L  
Sbjct: 57  SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV--SGNNKIIFEANDILTK 114

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
            F  + FD++  +  +  L +            +       +  ++ LKP G  +   + 
Sbjct: 115 EFPENNFDLIYSRDAILALSL-------ENKNKL------FQKCYKWLKPTGTLLITDYC 161

Query: 122 QPHFRRPFFNAPQFTWSVEW 141
                       +F   V+ 
Sbjct: 162 A---TEKENWDDEFKEYVKQ 178

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 24/118 (20%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            +++ GCGN    + L       + CID++ +A+++++E+           +        
Sbjct: 20  VIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKEVKEK--------FDSVITLSDPKE 70

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
             ++  D ++                    +       ++  V R+LK DG  I + +
Sbjct: 71  IPDNSVDFIL---FANSFH------DMDDKQ------HVISEVKRILKDDGRVIIIDW 113

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
            L+LG G    +  L      +I C++++ V  ++ +E     G  + + V     L++P
Sbjct: 86  GLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
             ++ +D +    + +  F++S D            + + +   RVLKP G+       +
Sbjct: 146 CEDNSYDFIW---SQDA-FLHSPDK-----------LKVFQECARVLKPRGVMAITDPMK 190

Query: 123 -----PHFRRPFFNAPQF 135
                    +P  +  + 
Sbjct: 191 EDGIDKSSIQPILDRIKL 208

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +LE+G G       L       +   + S   +   + R       E   + A    LPF
Sbjct: 40  LLEVGAGTGYWLRRLPYPQKVGV---EPSEAMLAVGRRRA-----PEATWVRAWGEALPF 91

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
             + FDVV     +        D              +L    RVL+P G  +    G  
Sbjct: 92  PGESFDVV----LLFTTLEFVEDV-----------ERVLLEARRVLRPGGALV---VGVL 133

Query: 124 HFRRPF 129
               P+
Sbjct: 134 EALSPW 139

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 21/162 (12%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADML 59
            V  + CG       L         +  ID    A++              + +   D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 60  DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119
            L    + +D++    T   L +   D          +V  +     + LKP G  ++  
Sbjct: 181 KLDTR-EGYDLL----TSNGLNIYEPDDA--------RVTELYRRFWQALKPGGALVTSF 227

Query: 120 FGQPHFRRP-----FFNAPQFTWSVEWITFGDGFHYFFYILR 156
              P    P               ++ + F       +  LR
Sbjct: 228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 3   SVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL-----LLKGYKEVKVLEA 56
            V++LGCG   L + L  D     IT +D+S  ++E  QERL         ++ +++++ 
Sbjct: 32  RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91

Query: 57  DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
            +         +D                +       +   + A    +    +P  + +
Sbjct: 92  ALTYQDKRFHGYDAAT-----------VIEVIEHLDLSR--LGAFERVLFEFAQPKIVIV 138

Query: 117 SV 118
           + 
Sbjct: 139 TT 140

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 24/155 (15%)

Query: 3   SVLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM 58
            +++ GCG       L   L        T ID     + + +E   L  Y   + LE D 
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEGS--KYTGIDSGETLLAEARELFRLLPYD-SEFLEGDA 81

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118
            ++   ND +D+ I       L           PE       ML+ +   +K  G  I  
Sbjct: 82  TEIEL-NDKYDIAI---CHAFLL------HMTTPE------TMLQKMIHSVKKGGKIICF 125

Query: 119 SFGQPHFR-RPFFNAPQFTWSVEWITFGDGFHYFF 152
                        +  + +  ++       F    
Sbjct: 126 EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT 160

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 55.8 bits (134), Expect = 9e-10
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLS----AVAVEKMQERLLLKGYKEVKVLEADM 58
            VL++ CG    S  L  +G + +T +D S      A+++   R     + +  + EA+ 
Sbjct: 60  RVLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118

Query: 59  LDLP---FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
           L L     + D FD VI          NS           ++    L+ +  +++P GL 
Sbjct: 119 LTLDKDVPAGDGFDAVI-------CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171

Query: 116 I 116
           +
Sbjct: 172 V 172

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 23/154 (14%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           ++LELG      +  L       ITC++ S  A+   Q RL       +  + +   D  
Sbjct: 45  NLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGRLKDG----ITYIHSRFEDAQ 99

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH-RVLKPDG-LFISVSF 120
                +D ++      VL            E +   +A+L+ ++   L   G LF+    
Sbjct: 100 LPRR-YDNIV---LTHVL------------EHIDDPVALLKRINDDWLAEGGRLFLVCPN 143

Query: 121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYI 154
                R+        + +           +    
Sbjct: 144 ANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTY 177

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 23/151 (15%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +  +LGCG    +E L +      IT ID     +EK  +R            +AD+   
Sbjct: 36  NGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATW 90

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
             +    D++         + N+   W P         A+L  +   L+  G+   V   
Sbjct: 91  KPAQK-ADLL---------YANAVFQWVPDHL------AVLSQLMDQLESGGVLA-VQMP 133

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFF 152
                       +      W     G     
Sbjct: 134 DNLQEPTHIAMHETADGGPWKDAFSGGGLRR 164

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 20/141 (14%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL 61
             L  GCG       + +     +  +D+S  A+ K  E        E    ++ D+   
Sbjct: 69  RALVPGCGGGHDVVAMASPERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
               + FD++ +      +     +P            A  + ++ +LKPDG  I++ + 
Sbjct: 128 RP-TELFDLIFDYVFFCAI-----EPE--------MRPAWAKSMYELLKPDGELITLMYP 173

Query: 122 QPHFRRPFFNAPQFTWSVEWI 142
                      P +   V   
Sbjct: 174 ITDHV----GGPPYKVDVSTF 190

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 23/179 (12%), Positives = 55/179 (30%), Gaps = 24/179 (13%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
            L+ G G  R+++ L          ++     +E+ +    L G    K + A M     
Sbjct: 97  ALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRE--LAGMPVGKFILASMETATL 154

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
             + +D+++    ++   +   D            +   +   + L P+G          
Sbjct: 155 PPNTYDLIV----IQWTAIYLTDA---------DFVKFFKHCQQALTPNGYIF------- 194

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMF 182
            F+       +F    E  +      ++  +  +       E   +     L P + M+
Sbjct: 195 -FKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFP-LKMY 251

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 10/162 (6%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
           SVL+LGCG           GI     +D++ V++   + R      + +K          
Sbjct: 67  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-----ARNMKR---RFKVFF 118

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
            + D +   ++    E   ++S   ++    T   +      + R L+P G FI ++   
Sbjct: 119 RAQDSYGRHMDL-GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI-MTVPS 176

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSAD 164
                  +   + +     I            +R+ + +  D
Sbjct: 177 RDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 218

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 54/173 (31%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           V + GCG+ RL+  + N     + C DL+                 + +V   DM  +P 
Sbjct: 71  VADFGCGDCRLASSIRNP----VHCFDLA---------------SLDPRVTVCDMAQVPL 111

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            ++  DV +    + ++  N  D               LE  +RVLKP GL         
Sbjct: 112 EDESVDVAV--FCLSLMGTNIRD--------------FLEEANRVLKPGGLLKVA----- 150

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGF----------HYFFYILRKGKRSSADEE 166
                F +   F  +V  +    GF          H+F +  +K        +
Sbjct: 151 EVSSRFEDVRTFLRAVTKL----GFKIVSKDLTNSHFFLFDFQKTGPPLVGPK 199

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 32/143 (22%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L 61
            VLE GCG+   +              D S   ++  +            V E +    L
Sbjct: 51  RVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARAN-----APHADVYEWNGKGEL 104

Query: 62  PFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG--LFISV 118
           P      F ++          V+   P            +++  +  +  PD   L++  
Sbjct: 105 PAGLGAPFGLI----------VSRRGP-----------TSVILRLPELAAPDAHFLYVGP 143

Query: 119 SFGQPHFRRPFFNAPQFTWSVEW 141
               P        A  +    E 
Sbjct: 144 RLNVPEVPER-LAAVGWDIVAED 165

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 22/137 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL++GCG     E    +GI +   +D++   ++  + +        V   +A      
Sbjct: 44  RVLDIGCGRGEFLELCKEEGIES-IGVDINEDMIKFCEGKF------NVVKSDAIEYLKS 96

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISV-SF 120
             +   D V+    +E L                ++  +L   +  +K    + I   + 
Sbjct: 97  LPDKYLDGVMISHFVEHL-------DPE------RLFELLSLCYSKMKYSSYIVIESPNP 143

Query: 121 GQPHFRRPFFNAPQFTW 137
              +    F+  P    
Sbjct: 144 TSLYSLINFYIDPTHKK 160

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 20/129 (15%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL- 61
            +++  CGN   ++ L       +  +D+S  A+E   +         +     D L   
Sbjct: 59  PLIDFACGNGTQTKFLSQFFPR-VIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPE 114

Query: 62  ---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118
                 ++  D  I    M   F        P  +       + + +  +L   G    +
Sbjct: 115 QAAQIHSEIGDANI---YMRTGFH-----HIPVEKRE----LLGQSLRILLGKQGAMYLI 162

Query: 119 SFGQPHFRR 127
             G      
Sbjct: 163 ELGTGCIDF 171

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 50.6 bits (120), Expect = 5e-08
 Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 31/172 (18%)

Query: 4   VLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            + +G G   L+   L +     +  +++     E  ++ +   G   V V+  D   + 
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID 185

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
                FDV++  A  E                      +   +HR +  +     + +  
Sbjct: 186 GLE--FDVLMVAALAE-------PKR-----------RVFRNIHRYVDTETR---IIYRT 222

Query: 123 PHFRRPFFNAP-------QFTWSVEWITFGDGFHYFFYILRKGKRSSADEEL 167
               R    AP        F  +   +  G   +    + +   +   + +L
Sbjct: 223 YTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKL 274

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 3   SVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61
           +VL++GCG    +    +         +D+S VA++   +R     Y +V    A    L
Sbjct: 88  AVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRL 142

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
           PFS+   D +I       ++                     E + RV+KP G  I+ + G
Sbjct: 143 PFSDTSMDAII------RIYA----------------PCKAEELARVVKPGGWVITATPG 180

Query: 122 QPHFRRPF 129
             H     
Sbjct: 181 PRHLMELK 188

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 14/127 (11%)

Query: 3   SVLELGCGNSRLSEGL--YNDGITAITCIDLSAVAVEKMQERL--LLKGYKEVKVLEADM 58
            ++++GCG    +  +         I   DLSA  ++  +         YK V    +  
Sbjct: 39  LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118
            D  F        ++K  ++++       W                 +  L+ DG     
Sbjct: 99  DDFKFLGADS---VDKQKIDMITAVECAHWFDFE-------KFQRSAYANLRKDGTIAIW 148

Query: 119 SFGQPHF 125
            +  P F
Sbjct: 149 GYADPIF 155

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 31/154 (20%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
           +++ GCG        +    + +  + LSA   +    R       + V+    +MLD P
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180

Query: 63  FSNDCFDVV--IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
           F           E +TM V         +           +     R LK  G +++++ 
Sbjct: 181 FDKGAVTASWNNE-STMYV-------DLH----------DLFSEHSRFLKVGGRYVTITG 222

Query: 121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYI 154
                  P +  P      +W++  +  H+   I
Sbjct: 223 C----WNPRYGQPS-----KWVSQINA-HFECNI 246

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           V++   GN   +  L           D+   A+ K  +RL   G +  +++     +L  
Sbjct: 26  VVDATMGNGNDTAFLAGLSKKVY-AFDVQEQALGKTSQRLSDLGIENTELILDGHENLD- 83

Query: 64  SNDCFDVVIEKATMEVLFVNSGDP-WNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119
                   I  A   + ++ S D     +P T    +  +E +   L+  G    + 
Sbjct: 84  --HYVREPIRAAIFNLGYLPSADKSVITKPHT---TLEAIEKILDRLEVGGRLAIMI 135

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL--LLKGYKEVKVLEADMLD 60
           +VL+LGCG            I  + C D++ V+V++ Q+R   +        +  A+ + 
Sbjct: 37  TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
              S +          M     +     +   E+  +   ML      L P G FI  + 
Sbjct: 97  ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156

Query: 121 GQPHFRRPFFNA--PQFTWSVEWITF-------GDGFHYFFYI 154
                 R    +    F   +  + F         G  Y F +
Sbjct: 157 NSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNL 199

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 25/125 (20%)

Query: 3   SVLELGCGNSRLSEGL-YNDGITAITCIDLSAVAVEKMQ---ERLLLKGYKEVKVLEADM 58
            +++LGCGN  +   L   +    +  +D S +AV   +   E  + +     + +  + 
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNP-----QPETVTKVMAMLEGVHRVLKPDG 113
           L        F+ V+                NP        T      M     R LK +G
Sbjct: 285 LS-GVEPFRFNAVL-----------C----NPPFHQQHALTDNVAWEMFHHARRCLKING 328

Query: 114 LFISV 118
               V
Sbjct: 329 ELYIV 333

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 12/162 (7%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGYKEVKVLEADMLDL 61
            VL +  GN    E  +   I  +   D  A A+ +  ER   L    + K  + D +  
Sbjct: 51  KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE 110

Query: 62  PFSNDCFDVVIEKATMEVLF--VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119
              +D F   + +      F  ++     +           ++  +  +    G  +  +
Sbjct: 111 TIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHY-ATVMNNLSELTASGGKVLITT 169

Query: 120 FGQPHFRR--------PFFNAPQFTWSVEWITFGDGFHYFFY 153
                  +           N P     +      D     + 
Sbjct: 170 MDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYN 211

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 22/121 (18%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL+LG G   L+  L   G   +  ++    +V  +Q+ L      + + L +D+ +  
Sbjct: 236 QVLDLGAGYGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEANA-LKAQALHSDVDEAL 293

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNP----QPETVTKV-MAMLEGVHRVLKPDGLFIS 117
                FD+++                NP        +  V  A +      L+P G+F  
Sbjct: 294 TEEARFDIIV---------------TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338

Query: 118 V 118
           V
Sbjct: 339 V 339

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 24/174 (13%)

Query: 4   VLELGCGN----SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADM 58
           V++  CGN    + L+  +  +G   +   D+   A+    ++L      + V +++   
Sbjct: 26  VVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH 83

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGD-PWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
            ++    DC    ++     + ++ SGD   + +PET  +    L     +L   G+   
Sbjct: 84  QNMDKYIDC---PVKAVMFNLGYLPSGDHSISTRPETTIQA---LSKAMELLVTGGIITV 137

Query: 118 VSF-GQPHFRRP-------FFNAPQFTWSVEWITFGDGFH--YFFYILRKGKRS 161
           V + G                   Q  + V+   F +  +       + K    
Sbjct: 138 VIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILVCIEKISEG 191

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 25/149 (16%)

Query: 4   VLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDL 61
           +L+LG G+  +      D GIT  T ID+S++   + + R    G  E V  +  D    
Sbjct: 40  ILDLGSGSGEMLCTWARDHGITG-TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
             +  C       AT                          E + + LKP G+ +    G
Sbjct: 99  VANEKCDVAACVGAT----------------WIAGGFAGAEELLAQSLKPGGIML---IG 139

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHY 150
           +P++R+    A +                
Sbjct: 140 EPYWRQL--PATEEIAQ-ACGVSSTSDFL 165

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 38/166 (22%)

Query: 3   SVLELGCGNSRLSEGL-------YNDGITAITCIDLSAVAVEKMQERL-LLKGYKEVKV- 53
            +L +G G   +   +       Y         ++ SA  + K +E +      + VK  
Sbjct: 55  KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114

Query: 54  -------LEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVH 106
                       +        +D +     +++L              V  + A L+  H
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIH---MIQML------------YYVKDIPATLKFFH 159

Query: 107 RVLKPDG-LFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYF 151
            +L  +  + I V  G   + + +                D   Y 
Sbjct: 160 SLLGTNAKMLIIVVSGSSGWDKLWKKYG------SRFPQDDLCQYI 199

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 4   VLELGCGNSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADM 58
           VL++G G+ +   +    +    +  +D     +EK+  +   K    G   +  L A  
Sbjct: 31  VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA 90

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA-MLEGVHRVLKPDGLF 115
             LP       V       E+  +    PW      V      ML G+  V +P   F
Sbjct: 91  ERLP---PLSGVG------ELHVL---MPWGSLLRGVLGSSPEMLRGMAAVCRPGASF 136

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 21/151 (13%)

Query: 4   VLELGCGNSRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADM 58
            ++LG G+ R    L  ND  T    ID     +  + ++++ K    G   V  + A  
Sbjct: 28  HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA 87

Query: 59  LDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMA-MLEGVHRVLKPDGLFIS 117
             LPF       + +  ++ +LF     PW    E V K    +L  V  + K +  F  
Sbjct: 88  ESLPFE---LKNIAD--SISILF-----PWGTLLEYVIKPNRDILSNVADLAKKEAHFE- 136

Query: 118 VSFGQPHFRRP----FFNAPQFTWSVEWITF 144
                              P  + +      
Sbjct: 137 FVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQ 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.89
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.8
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.79
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.79
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.78
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.77
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.76
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.76
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.75
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.75
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.74
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.74
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.74
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.74
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.74
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.74
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.74
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.74
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.73
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.73
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.73
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.73
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.73
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.73
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.73
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.73
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.72
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.72
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.72
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.72
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.71
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.71
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.71
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.71
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.71
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.7
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.7
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.7
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.7
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.7
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.7
3ocj_A	305	Putative exported protein; structural genomics, PS	99.69
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.69
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.69
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.69
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.69
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.69
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.69
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.69
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.68
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.68
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.68
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.68
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.68
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.68
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.67
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.67
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.67
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.67
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.66
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.66
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.66
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.66
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.66
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.65
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.65
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.65
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.65
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.65
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.64
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.64
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.64
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.63
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.62
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.62
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.62
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.62
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.62
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.62
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.62
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.61
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.61
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.61
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.61
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.61
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.61
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.61
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.61
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.61
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.61
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.6
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.6
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.6
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.6
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.59
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.59
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.58
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.58
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.58
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.58
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.57
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.57
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.57
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.57
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.57
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.56
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.56
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.56
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.56
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.56
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.56
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.56
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.56
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.55
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.55
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.54
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.54
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.54
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.53
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.53
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.53
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.52
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.52
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.52
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.52
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.52
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.52
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.51
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.51
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.51
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.51
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.51
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.51
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.51
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.51
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.5
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.5
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.5
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.5
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.49
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.49
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.49
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.48
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.48
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.48
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.47
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.47
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.46
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.46
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.46
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.46
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.45
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.45
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.45
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.45
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.45
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.45
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.44
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.44
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.43
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.43
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.43
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.43
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.43
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.43
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.42
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.42
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.42
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.42
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.42
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.42
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.41
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.41
2o07_A	304	Spermidine synthase; structural genomics, structur	99.41
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.4
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.4
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.4
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.39
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.39
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.38
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.37
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.37
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.35
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.35
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.32
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.32
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.3
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.3
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.28
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.28
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.28
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.28
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.28
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.27
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.27
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.27
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.25
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.25
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.21
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.2
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.16
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.15
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.1
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.1
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.1
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.1
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.1
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.04
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.01
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.97
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
3lkd_A	542	Type I restriction-modification system methyltrans	98.9
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.88
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.84
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.75
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.74
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.74
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.7
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.7
3khk_A	544	Type I restriction-modification system methylation	98.7
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.64
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.63
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.56
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.54
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.49
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.47
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.47
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.43
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.31
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.25
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.23
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.2
3ufb_A	530	Type I restriction-modification system methyltran	98.19
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.02
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.89
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.88
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.88
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.8
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.58
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.55
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.31
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.25
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.07
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.07
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.05
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.89
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.59
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.41
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.34
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.32
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.31
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.3
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.27
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.1
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.09
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.97
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.85
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.75
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.7
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.51
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.43
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.42
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.23
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.23
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.16
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.15
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.14
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.09
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.05
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.81
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.76
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.72
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.66
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.66
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.65
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.59
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.5
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.48
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.47
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.36
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.28
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.15
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.12
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.03
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.03
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.03
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.02
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.0
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.86
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.85
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.77
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.77
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.75
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.52
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.49
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.26
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.21
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.16
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.07
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.06
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.95
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.93
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	92.83
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.8
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.78
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.64
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.56
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.55
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.55
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.34
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.24
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	92.21
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.2
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.07
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.05
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.95
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	91.71
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.6
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.3
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.13
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	91.1
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.05
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.95
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	90.94
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	90.92
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	90.9
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.87
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.83
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.83
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.81
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.7
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.64
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.39
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.3
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.16
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.09
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	90.03
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	89.57
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	89.25
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.12
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.07
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.92
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	88.89
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.79
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	88.76
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	88.76
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.76
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.72
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	88.59
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	88.33
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.25
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	88.22
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.1
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	88.02
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	87.93
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.87
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	87.83
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.73
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	87.68
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.65
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	87.33
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	87.17
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.03
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.88
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	86.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	86.72
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.61
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	86.41
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	86.35
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	86.33
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	86.31
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.26
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.25
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.89
3imf_A	257	Short chain dehydrogenase; structural genomics, in	85.82
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	85.71
3rih_A	293	Short chain dehydrogenase or reductase; structural	85.52
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	85.48
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.36
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	85.18
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	85.15
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.13
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	85.09
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	85.08
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	85.05
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	84.99
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	84.98
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	84.94
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	84.93
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.91
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	84.87
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	84.81
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.74
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	84.52
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.5
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.46
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.45
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.4
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	84.02
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.0
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	83.71
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.42
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	83.29
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	83.26
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.24
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	83.22
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	83.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	83.2
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	83.13
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.08
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	83.02
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	82.99
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.99
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	82.88
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	82.7
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	82.56
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	82.49
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	82.36
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	82.29
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	82.16
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	82.13
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	81.96
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	81.94
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	81.81
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	81.81
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	81.49
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.43
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	81.35
3cxt_A	291	Dehydrogenase with different specificities; rossma	81.32
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	81.21
1xkq_A	280	Short-chain reductase family member (5D234); parra	80.95
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	80.79
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	80.77

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=154.67  Aligned_cols=160  Identities=38%  Similarity=0.680  Sum_probs=140.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+..+++++|+++.+++.++++...  .+++.++++|+..+++++++||+|+++.+++++
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence            468999999999999999998766899999999999999998764  358999999999888778899999999999998


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR  160 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (201)
                      ......||....++..+..++++++.++|+|||.+++.++..++....++....+.|.......+++.+++++++++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGK  200 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEETCC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhccccCcEEEEEEecCcceEEEEEEEeCCC
Confidence            77778889887777888999999999999999999999998887777777666778988888888888999999988665


Q ss_pred             Cc
Q 028957          161 SS  162 (201)
Q Consensus       161 ~~  162 (201)
                      ..
T Consensus       201 ~~  202 (215)
T 2pxx_A          201 LS  202 (215)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.80  E-value=5.7e-19  Score=139.15  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=91.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      |.+|||+|||+|..+..+++..  .. +|+|+|+|+.|++.|++++...+ ..+++++++|+.++++  +.||+|+++.+
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~  148 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNFT  148 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEESC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeeee
Confidence            5789999999999999998863  22 89999999999999999988766 3479999999988775  46999999999


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +|++             +.++..+++++++++|||||.+++.+...
T Consensus       149 l~~~-------------~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          149 LQFL-------------EPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             GGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeec-------------CchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            9887             34567789999999999999999876543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.79  E-value=1.8e-19  Score=136.91  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc------------CCCceEEEEcccCCCCCCC-Cc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------------GYKEVKVLEADMLDLPFSN-DC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~------------~~~~i~~~~~d~~~~~~~~-~~   67 (201)
                      +.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....            ..++++++++|+.++++.+ ++
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~  101 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH  101 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred             CCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence            46899999999999999999887 9999999999999999876421            1257999999999887654 78


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ||+|++..+++++             +.++..+++++++++|||||++++.+
T Consensus       102 fD~v~~~~~l~~l-------------~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A          102 CAAFYDRAAMIAL-------------PADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             EEEEEEESCGGGS-------------CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEEECcchhhC-------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999998888876             34567789999999999999955444

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.79  E-value=6.2e-19  Score=138.31  Aligned_cols=105  Identities=17%  Similarity=0.295  Sum_probs=93.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+.+++.++++|+..+++++++||+|++..++|++
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~  116 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF  116 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhc
Confidence            46899999999999999998876 99999999999999999988777778999999999988888999999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     .+...+++++.++|+|||++++.+..
T Consensus       117 ---------------~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          117 ---------------PNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---------------CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence                           45679999999999999999987543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.78  E-value=3.5e-19  Score=140.05  Aligned_cols=99  Identities=21%  Similarity=0.327  Sum_probs=87.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+|||+|||+|.++..++..+. +|+|+|+|+.|++.+++      .+++.++++|+.++++++++||+|++..++|++ 
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-  112 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-  112 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-
T ss_pred             CCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccCCcccEEEEeeehhHh-
Confidence            5799999999999999999876 99999999999987753      258999999999999999999999999988765 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     +..++++++.++|||||.+++..+..+
T Consensus       113 ---------------~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          113 ---------------DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             ---------------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             ---------------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence                           245799999999999999998876644

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.77  E-value=2.4e-18  Score=133.54  Aligned_cols=106  Identities=25%  Similarity=0.331  Sum_probs=95.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+.+++.++++|+..+++++++||+|++..+++++
T Consensus        22 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  100 (239)
T 1xxl_A           22 EHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF  100 (239)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhc
Confidence            46899999999999999998876 99999999999999999988777778999999999888888899999999888776


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .+..++++++.++|+|||.+++.+...
T Consensus       101 ---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A          101 ---------------SDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ---------------cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                           456889999999999999999876543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.77  E-value=1.4e-18  Score=136.21  Aligned_cols=106  Identities=12%  Similarity=0.222  Sum_probs=88.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-----------------cCCCceEEEEcccCCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-----------------KGYKEVKVLEADMLDLPF   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~d~~~~~~   63 (201)
                      +.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.++++...                 ....+++++++|+.+++.
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            46899999999999999999988 999999999999999876531                 012579999999998876


Q ss_pred             CC-CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           64 SN-DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        64 ~~-~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .. ++||+|++..+++++             +.++..++++++.++|||||++++.++
T Consensus       148 ~~~~~FD~V~~~~~l~~l-------------~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAI-------------NPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             GCCCCEEEEEESSSTTTS-------------CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhC-------------CHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence            53 799999999888876             235677899999999999999876543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.76  E-value=1.3e-17  Score=127.41  Aligned_cols=106  Identities=21%  Similarity=0.298  Sum_probs=91.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-----ceEEEEcccCCCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-----EVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++...+.+     ++.++++|+...+.+.++||+|++.
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  109 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI  109 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence            468999999999999999998653 9999999999999999998766644     7999999997766666799999999


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .+++++             ..++..++++++.++|+|||.+++..
T Consensus       110 ~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          110 EVIEHL-------------DLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             SCGGGC-------------CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             HHHHcC-------------CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            999887             33567899999999999999766554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.76  E-value=9.7e-18  Score=125.92  Aligned_cols=105  Identities=21%  Similarity=0.407  Sum_probs=92.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+.+++.++++|+.++++ .++||+|++..+++++
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFL  110 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGS
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhC
Confidence            46899999999999999998866 999999999999999999887776689999999998777 7899999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   ..++..++++++.++|+|||.+++.+.
T Consensus       111 -------------~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          111 -------------EAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             -------------CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence                         335778999999999999999877653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.75  E-value=5.3e-18  Score=129.50  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=95.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+ +. +|+++|+++.+++.+++++...+.+++.++++|+..++++.++||+|++..+++
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  117 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH  117 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence            4689999999999999999885 33 999999999999999999988877789999999998888888999999999988


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++               .+...+++++.++|+|||.+++.++..
T Consensus       118 ~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          118 EL---------------SEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             GC---------------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             hc---------------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            76               456899999999999999999987653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.75  E-value=7e-18  Score=131.69  Aligned_cols=103  Identities=21%  Similarity=0.269  Sum_probs=91.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++..   ..++.++++|+..++++.++||+|++..+++++
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  121 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI  121 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence            46899999999999999999977699999999999999998865   258999999999888888999999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     ++..++++++.++|+|||.+++....
T Consensus       122 ---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          122 ---------------ASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---------------hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                           56789999999999999999987554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=1.1e-17  Score=130.71  Aligned_cols=104  Identities=21%  Similarity=0.281  Sum_probs=92.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.++.+|+++|+++.+++.++++....+.++ +.++++|+..+++++++||+|++..++++
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  126 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYN  126 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhh
Confidence            46899999999999999999865699999999999999999998877544 99999999988888899999999988876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +                +..++++++.++|+|||++++.+.
T Consensus       127 ~----------------~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          127 I----------------GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             C----------------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             c----------------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4                357899999999999999998864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.75  E-value=2.1e-17  Score=126.33  Aligned_cols=106  Identities=20%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-----ceEEEEcccCCCCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-----EVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++...+.+     ++.++++|+...+.+.++||+|++.
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  109 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI  109 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence            468999999999999999988753 9999999999999999998765543     7999999997776667899999999


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .+++++             ..++..++++++.++|+|||.++...
T Consensus       110 ~~l~~~-------------~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          110 EVIEHL-------------DENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             SCGGGC-------------CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             HHHHhC-------------CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            999887             33466899999999999999666543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.74  E-value=1.3e-17  Score=128.61  Aligned_cols=107  Identities=24%  Similarity=0.346  Sum_probs=92.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+++.+++.+++++...+  ++.++++|+.+++++ ++||+|++..++++
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE-EKYDMVVSALSIHH  121 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence            468999999999999999988533 99999999999999999876654  899999999988776 89999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +             ......++++++.++|+|||.+++.++..+
T Consensus       122 ~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          122 L-------------EDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            7             334556799999999999999998876543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.74  E-value=6.9e-18  Score=127.47  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=91.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++.     +++.++++|+.++++++++||+|++..+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            47899999999999999999877 9999999999999998873     47899999999888778999999999888876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   ..++..++++++.++|+|||.+++..+...
T Consensus       116 -------------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          116 -------------GPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             -------------CTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence                         234778999999999999999998876654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.74  E-value=9.3e-18  Score=133.32  Aligned_cols=105  Identities=19%  Similarity=0.338  Sum_probs=92.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+. +++.++++|+..++ +.+++||+|++..+++
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            46899999999999999999866 999999999999999999887775 68999999999876 6678999999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++               .+..++++++.++|+|||.+++..++
T Consensus       148 ~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          148 WV---------------ADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             GC---------------SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cc---------------cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            76               45678999999999999999988754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.74  E-value=9.4e-18  Score=130.21  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=92.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+..++.++++|+..++++.++||+|++..+++++
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  159 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL  159 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence            46899999999999999988865599999999999999999887654346899999998888777799999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   ..+...++++++.++|+|||.+++.++.
T Consensus       160 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          160 -------------TDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence                         2344679999999999999999987654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=1.9e-17  Score=130.36  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=92.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++....+. +++.++++|+.+++++.++||+|++..++++
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~  126 (267)
T 3kkz_A           47 KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN  126 (267)
T ss_dssp             TCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence            478999999999999999998444999999999999999999888775 4599999999988888889999999988876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +                +..++++++.++|+|||.+++.+..
T Consensus       127 ~----------------~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          127 I----------------GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             T----------------CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             c----------------CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            4                3578999999999999999987653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.74  E-value=1.4e-17  Score=131.62  Aligned_cols=105  Identities=32%  Similarity=0.473  Sum_probs=94.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++...+.+++.++.+|+..++++.++||+|++..++++
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  117 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH  117 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhh
Confidence            468999999999999999988543 9999999999999999999888877899999999998888899999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+...+++++.++|+|||.+++.+.
T Consensus       118 ~---------------~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          118 L---------------QSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             C---------------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c---------------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            6               4556899999999999999998764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.74  E-value=1.1e-17  Score=130.56  Aligned_cols=104  Identities=21%  Similarity=0.196  Sum_probs=90.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++....+|+++|+++.+++.++++....+. +++.++++|+.++++ +++||+|++..++++
T Consensus        37 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~  115 (256)
T 1nkv_A           37 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWI  115 (256)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCChHh
Confidence            468999999999999999887433999999999999999999887765 479999999998776 789999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+..++++++.++|||||++++.+.
T Consensus       116 ~---------------~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          116 A---------------GGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             T---------------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             c---------------CCHHHHHHHHHHHcCCCeEEEEecC
Confidence            5               3568899999999999999998754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.74  E-value=1e-17  Score=131.25  Aligned_cols=106  Identities=19%  Similarity=0.326  Sum_probs=93.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++.. +. +|+++|+++.+++.++++....  +++.++++|+..++++.++||+|++..++++
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  132 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDAILA  132 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence            468999999999999999987 55 9999999999999999886554  5899999999998888899999999999887


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +             +..+...+++++.++|+|||.+++.++..
T Consensus       133 ~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          133 L-------------SLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             c-------------ChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            6             34788999999999999999999887543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.74  E-value=3.2e-17  Score=125.61  Aligned_cols=108  Identities=27%  Similarity=0.368  Sum_probs=93.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.++ +++++|+++.+++.++++....+ +++.++++|+.+++++.++||+|+++.+++..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  116 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  116 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence            46899999999999999999887 99999999999999999987765 58999999999877777899999998885443


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   +..+..++++++.++|+|||.+++.++..+
T Consensus       117 -------------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  146 (227)
T 1ve3_A          117 -------------EPLELNQVFKEVRRVLKPSGKFIMYFTDLR  146 (227)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEecChH
Confidence                         346788999999999999999998876533

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.74  E-value=1.1e-17  Score=127.56  Aligned_cols=104  Identities=21%  Similarity=0.370  Sum_probs=91.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....  +++.++++|+.+++ +.++||+|+++.++|++ 
T Consensus        53 ~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~-  127 (216)
T 3ofk_A           53 SNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFS-TAELFDLIVVAEVLYYL-  127 (216)
T ss_dssp             EEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCC-CSCCEEEEEEESCGGGS-
T ss_pred             CcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCC-CCCCccEEEEccHHHhC-
Confidence            5899999999999999998875 9999999999999999987664  38999999999877 57899999999999887 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                 ...+...++++++.++|+|||.+++.+..
T Consensus       128 -----------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          128 -----------EDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             -----------SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             -----------CCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence                       23456678999999999999999987644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.74  E-value=9.7e-18  Score=129.89  Aligned_cols=102  Identities=21%  Similarity=0.262  Sum_probs=89.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...    ++.++++|+.++ .++++||+|++..+++++
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~  116 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA-QLPRRYDNIVLTHVLEHI  116 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence            46899999999999999998877 899999999999999987643    789999999886 457899999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHh-hcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVH-RVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~~~~~~~~  123 (201)
                                     .+..++++++. ++|+|||.+++.+++..
T Consensus       117 ---------------~~~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A          117 ---------------DDPVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             ---------------SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             ---------------cCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence                           45689999999 99999999999876543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.73  E-value=3.6e-17  Score=130.00  Aligned_cols=104  Identities=18%  Similarity=0.259  Sum_probs=92.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+. ++.++++|+...+. .++||+|+++.++|++
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-QENYDFIVSTVVFMFL  197 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-cCCccEEEEccchhhC
Confidence            46899999999999999999977 999999999999999999988776 89999999998766 6899999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   +.+....+++++.++|+|||.+++...
T Consensus       198 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          198 -------------NRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             -------------CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                         346678999999999999999776543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.73  E-value=3.8e-17  Score=125.64  Aligned_cols=109  Identities=25%  Similarity=0.448  Sum_probs=94.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-----CceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-----KEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+.     .++.++++|+..++++.++||+|++..
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            46899999999999999999966 999999999999999998876653     258999999998888889999999999


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +++++            .......++++++.++|+|||.+++.++..
T Consensus       110 ~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          110 FLTSV------------PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             CGGGC------------CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             hhhcC------------CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            98876            233556699999999999999999987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.73  E-value=3e-17  Score=124.95  Aligned_cols=104  Identities=21%  Similarity=0.265  Sum_probs=90.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++    .+.+++.++++|+.++ ++.++||+|++..++|++
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~  120 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHV  120 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGS
T ss_pred             CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CCCCceeEEEEechhhcC
Confidence            46899999999999999999866 99999999999999987    3446899999999887 677899999999999887


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   ..+....+++++.++|+|||.+++.++..+
T Consensus       121 -------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          121 -------------PDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence                         334568999999999999999999887653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.73  E-value=1.9e-17  Score=129.05  Aligned_cols=105  Identities=16%  Similarity=0.235  Sum_probs=92.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....  +++.++++|+..++++.++||+|++..+++++
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence            4689999999999999998886558999999999999999987654  57999999999888878899999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   ..++..++++++.++|+|||.+++.+.
T Consensus       172 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          172 -------------TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                         335688999999999999999998875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.73  E-value=2.3e-17  Score=131.67  Aligned_cols=105  Identities=20%  Similarity=0.385  Sum_probs=93.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++....+. +++.++++|+..+++++++||+|++..+++
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  161 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL  161 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhh
Confidence            468999999999999999887 55 999999999999999999877664 479999999999888889999999999988


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++               .+...+++++.++|+|||.+++.++.
T Consensus       162 ~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          162 HS---------------PDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             GC---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hc---------------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            76               44689999999999999999988754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.73  E-value=3.3e-17  Score=124.09  Aligned_cols=109  Identities=21%  Similarity=0.324  Sum_probs=91.6

Q ss_pred             CCcEEEecCCCChhhHH-HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEG-LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~-l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|..+.. ++..+. +|+++|+++.+++.++++....+ .++.++++|+..+++++++||+|++..++++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  101 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKDESMSFVYSYGTIFH  101 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence            46899999999998544 444455 99999999999999999887655 4789999999988887889999999888876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +             ..++..++++++.++|+|||.+++.+++.+.
T Consensus       102 ~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  133 (209)
T 2p8j_A          102 M-------------RKNDVKEAIDEIKRVLKPGGLACINFLTTKD  133 (209)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred             C-------------CHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence            5             3467899999999999999999998876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.73  E-value=4.7e-17  Score=121.81  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+.++++++++|+.+..  ++.++||+|+++..++
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~  124 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN  124 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence            46899999999999998888776689999999999999999998887778999999998753  4468899999876654


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~~~~  122 (201)
                      ..              .++..++++.+.+  +|+|||.+++.....
T Consensus       125 ~~--------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          125 VD--------------SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             SC--------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             cc--------------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            32              2678899999999  999999999876554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.73  E-value=2.7e-17  Score=129.61  Aligned_cols=106  Identities=27%  Similarity=0.405  Sum_probs=92.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++....+|+++|+++.+++.++++....+. +++.++++|+..+++++++||+|++..++++
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  141 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHH  141 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhh
Confidence            468999999999999999886334999999999999999999887664 3699999999998888889999999988876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +               .+..++++++.++|+|||++++.++.
T Consensus       142 ~---------------~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          142 M---------------PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             S---------------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             C---------------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            6               45589999999999999999987754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.73  E-value=3e-17  Score=124.77  Aligned_cols=103  Identities=17%  Similarity=0.305  Sum_probs=91.4

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      +|||+|||+|.++..+++....+++++|+++.+++.+++++...+. +++.++++|+.+++++.++||+|++..+++++ 
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-  124 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW-  124 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC-
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc-
Confidence            7999999999999999987222999999999999999999887764 47999999999988888999999999988876 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                    .+..++++++.++|+|||.+++.+.
T Consensus       125 --------------~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          125 --------------EDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             --------------SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------------cCHHHHHHHHHHhCCCCCEEEEEec
Confidence                          5668899999999999999998753

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.73  E-value=3e-17  Score=125.37  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++..    .++.++++|+.+++++ ++||+|++..+++++
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEEEEESCGGGS
T ss_pred             CCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEEEECcchhcC
Confidence            46899999999999999999866 99999999999999998865    3789999999998877 899999999999877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   .......+++++.++|+|||.+++.++.
T Consensus       120 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          120 -------------TDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             -------------CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             -------------ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence                         2233455999999999999999988644

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.72  E-value=3.2e-17  Score=128.30  Aligned_cols=101  Identities=25%  Similarity=0.383  Sum_probs=89.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++ ....+++.++++|+..+++++++||+|++..++|++
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence            46899999999999999998865 9999999999999999987 333468999999999888878899999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                     .+..++++++.++|+|||.+++.
T Consensus       118 ---------------~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          118 ---------------PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ---------------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------CCHHHHHHHHHHHCCCCcEEEEE
Confidence                           46788999999999999998876

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.72  E-value=1.5e-17  Score=133.58  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC------ceEEEEcccC------CC--CCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK------EVKVLEADML------DL--PFSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~------~i~~~~~d~~------~~--~~~~~   66 (201)
                      +.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+..      ++.+.+.|+.      ++  +++.+
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~  128 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG  128 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence            4689999999998777666665459999999999999999987665421      2567888872      22  24568


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +||+|+|..++|+++            +.++..++++++.++|||||.+++.+++..
T Consensus       129 ~FD~V~~~~~lhy~~------------~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          129 KFNIIDWQFAIHYSF------------HPRHYATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             CEEEEEEESCGGGTC------------STTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             CeeEEEECchHHHhC------------CHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            999999999998763            113457999999999999999998877543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.72  E-value=5.3e-17  Score=129.25  Aligned_cols=111  Identities=23%  Similarity=0.277  Sum_probs=95.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCC-CCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPF-SNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+. .++.++++|+...++ +.++||+|++..++|
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  144 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH  144 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhh
Confidence            468999999999999998887655999999999999999999887653 468999999998776 578999999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +.+           .+..+..++++++.++|+|||.+++..++.
T Consensus       145 ~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          145 YAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             GGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            642           245788999999999999999999887654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.72  E-value=4.2e-17  Score=131.39  Aligned_cols=104  Identities=17%  Similarity=0.259  Sum_probs=93.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++....++. ++.++++|+.+++++.++||+|++..+++
T Consensus       118 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  196 (312)
T 3vc1_A          118 DDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTM  196 (312)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGG
T ss_pred             CCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchh
Confidence            468999999999999999987 65 8999999999999999999887754 79999999999888889999999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++                +..++++++.++|+|||++++.+..
T Consensus       197 ~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          197 YV----------------DLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             GS----------------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hC----------------CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            65                2789999999999999999987754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.72  E-value=8.7e-17  Score=122.72  Aligned_cols=112  Identities=20%  Similarity=0.304  Sum_probs=91.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++...+. +++++|+++.+++.++++....+.+++.++++|+..++  ++.++||+|+++.  
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~--  119 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF--  119 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES--
T ss_pred             CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC--
Confidence            368999999999999999988654 99999999999999999998877778999999998865  6678899999752  


Q ss_pred             ceeeecCCCCCCCCCccHH--HHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                             ++||.+..+...  ....+++++.++|+|||.+++.+..
T Consensus       120 -------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          120 -------SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             -------CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             -------CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence                   466755332222  2468999999999999999987643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.72  E-value=3e-17  Score=127.02  Aligned_cols=103  Identities=27%  Similarity=0.469  Sum_probs=90.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++..   ..++.++++|+.++++++++||+|++..+++++
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            46899999999999999999976 99999999999999987742   257999999999988888999999999888776


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .+..++++++.++|+|||.+++.++..
T Consensus       130 ---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          130 ---------------EEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ---------------cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence                           456789999999999999999887554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.71  E-value=7.3e-17  Score=120.18  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccc-cc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKAT-ME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~-l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...+.+++++++.++..+. +.+++||+|+++.. ++
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~  101 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP  101 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence            57899999999999999998844 99999999999999999998877778999998877643 44678999987521 11


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .     .++..  ........++++++.++|||||++++..+.
T Consensus       102 ~-----~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A          102 S-----ADKSV--ITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             ---------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             C-----cchhc--ccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            1     00000  012355678899999999999999988765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.71  E-value=1.2e-16  Score=128.12  Aligned_cols=113  Identities=12%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++....+.+ ++.++.+|+.++   +++||+|++..+++
T Consensus        73 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~  148 (302)
T 3hem_A           73 GMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFE  148 (302)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGG
T ss_pred             cCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHH
Confidence            468999999999999999988 64 9999999999999999999887754 799999999876   68999999998888


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++    ++|+.  ..+.+....+++++.++|+|||++++.++..+
T Consensus       149 ~~----~d~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          149 HF----ADGAG--DAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             GT----TCCSS--CCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             hc----Ccccc--ccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            76    12110  00235678999999999999999998876544

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.71  E-value=7.5e-17  Score=118.46  Aligned_cols=99  Identities=20%  Similarity=0.445  Sum_probs=86.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++     .+++.+..+|   .+++.++||+|++..+++++
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~   88 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFILFANSFHDM   88 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence            35899999999999999999876 999999999999999987     3588999998   56667899999999888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     ++...+++++.++|+|||++++.++...
T Consensus        89 ---------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           89 ---------------DDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ---------------cCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence                           4568999999999999999999876543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.71  E-value=7.1e-17  Score=123.38  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=91.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++..+. +++|+|+++.+++.++++....+.+++.++++|+..++  ++.++||.|++.   
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~---  115 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN---  115 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE---
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE---
Confidence            358999999999999999987544 99999999999999999998888788999999998764  667789988752   


Q ss_pred             ceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                            +++||.+..+....  ...+++++.++|+|||.+++.+..
T Consensus       116 ------~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          116 ------FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             ------SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             ------CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence                  35678654332222  368999999999999999987643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.71  E-value=6.6e-17  Score=126.92  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc-ccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++..     ++.++++|+..+++ .++||+|++.. ++++
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~  123 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGH  123 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-SCCEEEEEECTTGGGG
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-cCCcCEEEEcCchhhh
Confidence            36899999999999999998876 89999999999999998743     78999999998776 68999999987 8887


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +            .+.++..++++++.++|+|||.+++..+..
T Consensus       124 ~------------~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          124 L------------AGQAELDAALERFAAHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             S------------CHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             c------------CCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            6            244678899999999999999999875433

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.71  E-value=3.6e-17  Score=126.34  Aligned_cols=106  Identities=18%  Similarity=0.264  Sum_probs=90.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+ ..++.++++|+.+.+ +.++||+|++..+++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~  145 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI  145 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred             CCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence            4899999999999999987665 89999999999999999987543 357999999998866 34689999999988876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                   ..++..++++++.++|+|||.+++..+..
T Consensus       146 -------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          146 -------------EPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             -------------CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             -------------CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence                         33578899999999999999999877654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.70  E-value=8.1e-17  Score=122.36  Aligned_cols=101  Identities=26%  Similarity=0.366  Sum_probs=88.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.      ++.+..+|+..++ ..++||+|++..+++++
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~  115 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHV  115 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-CCCcEEEEEecCchhhc
Confidence            46899999999999999999876 9999999999999999886      4577889988877 67899999999999877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                   ..++...+++++.++|+|||.+++.....
T Consensus       116 -------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          116 -------------PRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence                         34578899999999999999999876543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.70  E-value=6.6e-17  Score=125.07  Aligned_cols=103  Identities=20%  Similarity=0.334  Sum_probs=90.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++...   .++.++++|+..++++.++||+|++..+++++
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  120 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALHYV  120 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEecccccc
Confidence            468999999999999999988665899999999999999887643   37899999999888778899999999888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     .+..++++++.++|+|||.+++.+..
T Consensus       121 ---------------~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          121 ---------------EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---------------chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence                           45689999999999999999987754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.70  E-value=1.1e-16  Score=123.84  Aligned_cols=106  Identities=20%  Similarity=0.306  Sum_probs=92.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc-ccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. ++.++++|+..++++ ++||+|++.. ++++
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc-CCceEEEEcCccccc
Confidence            46899999999999999998876 899999999999999999877654 789999999887766 8899999988 8887


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +            ...++..++++++.++|+|||.+++....
T Consensus       115 ~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          115 I------------IDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             C------------CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             c------------CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6            23467889999999999999999986554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.70  E-value=2.8e-16  Score=119.00  Aligned_cols=107  Identities=17%  Similarity=0.220  Sum_probs=87.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC--CCCCc-eeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP--FSNDC-FDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~--~~~~~-~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+.  ++++++++|+.+..  .+.++ ||+|+++.
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  133 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  133 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence            468999999999999988877766999999999999999999988876  68999999987643  23578 99999865


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHH--hhcccCCcEEEEEecCCc
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~~~~~~~~  123 (201)
                      .++                ......+++.+  .++|+|||.+++......
T Consensus       134 ~~~----------------~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          134 PFH----------------FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CSS----------------SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCC----------------CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            532                13556778888  678999999998765543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.5e-17  Score=128.72  Aligned_cols=105  Identities=16%  Similarity=0.212  Sum_probs=89.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhc--CCCceEEEEcccCCCCCCC------CceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLK--GYKEVKVLEADMLDLPFSN------DCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~------~~~D~   70 (201)
                      +.+|||+|||+|..+..+++.  ...+|+++|+++.+++.++++....  ..+++.++++|+.+++++.      ++||+
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  116 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM  116 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence            468999999999999999963  2339999999999999999998775  2468999999999887666      79999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      |++..++|++                +..++++++.++|+|||.+++.++.
T Consensus       117 V~~~~~l~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          117 ITAVECAHWF----------------DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEESCGGGS----------------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeHhhHHHHh----------------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            9999888754                4578999999999999999885544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.70  E-value=3.2e-17  Score=126.93  Aligned_cols=109  Identities=16%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEe-cccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIE-KATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~-~~~l   77 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+ .++.++++|+.++  ++++++||+|++ .+.+
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            35899999999999999987665599999999999999999887665 5799999999887  788889999998 4443


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +.-  +         .+......+++++.++|||||++++.+..
T Consensus       140 ~~~--~---------~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          140 SEE--T---------WHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             BGG--G---------TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             chh--h---------hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            110  0         12345678899999999999999977543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.70  E-value=1e-16  Score=128.24  Aligned_cols=109  Identities=21%  Similarity=0.321  Sum_probs=92.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC---CceEEEEcccCCCCCCCCceeEEEec-ccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSNDCFDVVIEK-ATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l   77 (201)
                      .+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+.   .++.++++|+.++++ .++||+|++. .++
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI  161 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred             CcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence            5899999999999999999876 899999999999999999877652   479999999998876 6889999865 555


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  125 (201)
                      |++             ..++..++++++.++|+|||.+++..+.....
T Consensus       162 ~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          162 NEL-------------DEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             TTS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             ccC-------------CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            543             34568899999999999999999988776543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.69  E-value=1.1e-16  Score=128.41  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             CCcEEEecCCCChhhHHHH-hcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLY-NDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~-~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|..+..++ ...+. +|+++|+++.+++.++++....+.. +++++++|+.+++++ ++||+|+++.++
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~  197 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN  197 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence            4689999999999999885 33323 9999999999999999998877643 499999999998877 899999999988


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +++            .......++++++.++|+|||++++.++..+
T Consensus       198 ~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          198 IYE------------PDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             GGC------------CCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             hhc------------CCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            876            2335566799999999999999999876544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.69  E-value=3.1e-17  Score=129.17  Aligned_cols=109  Identities=23%  Similarity=0.274  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC--C---------------------------Cce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--Y---------------------------KEV   51 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~--~---------------------------~~i   51 (201)
                      |++|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++....  .                           .++
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV  135 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred             CceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence            35899999999988887777776689999999999999998765431  0                           124


Q ss_pred             E-EEEcccCCC-CC---CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           52 K-VLEADMLDL-PF---SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        52 ~-~~~~d~~~~-~~---~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      . ++++|+... ++   ..++||+|+++.++|++.           .+.++..+++++++++|||||.+++...
T Consensus       136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----------~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----------CSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             heEEeccccCCCCCCccccCCCCEeeehHHHHHhc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3 889998873 32   256899999999998752           1346788999999999999999998864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.69  E-value=5.2e-17  Score=125.91  Aligned_cols=101  Identities=18%  Similarity=0.311  Sum_probs=87.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++        +.++.+|+.+.  ++++++||+|++..+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~  112 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISHFVE  112 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEESCGG
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECCchh
Confidence            47899999999999999998877 899999999999998764        68888888774  67789999999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++             ..++...+++++.++|||||.+++.++...
T Consensus       113 ~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A          113 HL-------------DPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             GS-------------CGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             hC-------------CcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            87             334678999999999999999998876643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.69  E-value=9.8e-17  Score=128.22  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=87.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCC-------------------------------
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGY-------------------------------   48 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~-------------------------------   48 (201)
                      +++|||+|||+|.++..++... ..+|+|+|+++.+++.|++++...+.                               
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            4789999999999999999873 34999999999999999987654321                               


Q ss_pred             ---------------------------CceEEEEcccCCCC-----CCCCceeEEEeccccceeeecCCCCCCCCCccHH
Q 028957           49 ---------------------------KEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT   96 (201)
Q Consensus        49 ---------------------------~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~   96 (201)
                                                 .++.++++|+....     +..++||+|+|..+++++..+         .+.+
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~---------~~~~  197 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN---------WGDE  197 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH---------HHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc---------CCHH
Confidence                                       37999999987643     457899999999988665111         1345


Q ss_pred             HHHHHHHHHhhcccCCcEEEEEe
Q 028957           97 KVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        97 ~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...+++++++++|+|||.+++..
T Consensus       198 ~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          198 GLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcEEEEec
Confidence            78899999999999999998753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.69  E-value=1.6e-16  Score=126.27  Aligned_cols=104  Identities=23%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+  .+|+++|+++.+++.++++....+. +++++++|+.+++++ ++||+|++..+++
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~v~~~~~l~  100 (284)
T 3gu3_A           23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-DKYDIAICHAFLL  100 (284)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC-CCeeEEEECChhh
Confidence            46899999999999999988743  3999999999999999999876654 899999999987774 6899999999888


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++               .+..++++++.++|+|||.+++.++.
T Consensus       101 ~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          101 HM---------------TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GC---------------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cC---------------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            76               45679999999999999999988765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.69  E-value=3e-16  Score=118.34  Aligned_cols=104  Identities=23%  Similarity=0.336  Sum_probs=89.7

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV   82 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~   82 (201)
                      +|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+. ++.++++|+..++++.++||+|++...  ++  
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~--  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSIFC--HL--  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEECC--CC--
T ss_pred             CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEEhh--cC--
Confidence            899999999999999998876 999999999999999999877664 789999999988877789999998421  11  


Q ss_pred             cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                 +..+..++++++.++|+|||.+++.++...
T Consensus       106 -----------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A          106 -----------PSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             -----------CHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             -----------CHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence                       346788999999999999999999877644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.69  E-value=4.1e-16  Score=117.95  Aligned_cols=103  Identities=16%  Similarity=0.099  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.++. +|+++|+++.+++.++++....+.++++++++|+........+||+|++...++ 
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~-  119 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG-  119 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT-
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc-
Confidence            468999999999999999998743 999999999999999999988777789999999876433346799999866542 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                       +..++++++.++|+|||++++....
T Consensus       120 -----------------~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          120 -----------------MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             -----------------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             -----------------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence                             4578999999999999999987654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.69  E-value=7.9e-17  Score=123.65  Aligned_cols=112  Identities=17%  Similarity=0.233  Sum_probs=91.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..++...+. .|+|+|+++.+++.++++....+.+++.++++|+..+ +  +++++||.|++.  
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~--  112 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF--  112 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE--
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe--
Confidence            358999999999999999988665 8999999999999999999888888999999998874 3  667899999863  


Q ss_pred             cceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                             +++||.+.......  ...+++++.++|||||.+++.+..
T Consensus       113 -------~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          113 -------FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             -------SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             -------CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence                   34678654332211  136999999999999999987643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=1.9e-16  Score=123.71  Aligned_cols=100  Identities=21%  Similarity=0.256  Sum_probs=87.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+ .+++++|+++.+++.++++     .+++.++++|+..++ ++++||+|+++.++|+
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~  107 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-PAQKADLLYANAVFQW  107 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-CSSCEEEEEEESCGGG
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-ccCCcCEEEEeCchhh
Confidence            46899999999999999988732 2899999999999999887     247899999998877 6789999999999887


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +               .+..++++++.++|+|||.+++.++.
T Consensus       108 ~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A          108 V---------------PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             S---------------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             C---------------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            6               56789999999999999999988754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.68  E-value=1e-16  Score=121.73  Aligned_cols=100  Identities=26%  Similarity=0.322  Sum_probs=87.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+   +..+++++|+++.+++.++++.     +++.++++|+..+++++++||+|++..+++++
T Consensus        37 ~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  108 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEFV  108 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred             CCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence            468999999999999877   3348999999999999999875     47899999999888888899999999888766


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     ++..++++++.++|+|||.+++.++...
T Consensus       109 ---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          109 ---------------EDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             ---------------CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence                           4568999999999999999999887654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.68  E-value=5.1e-17  Score=129.39  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCCC---CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP---FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~---~~~~~~D~v~~   73 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++.....    ..++.+..+|+..++   ++.++||+|++
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~  136 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  136 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence            46899999999999999999987 99999999999999998763322    246788999988876   67889999999


Q ss_pred             c-cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 K-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      . .+++++..    +    ....++..++++++.++|+|||.+++...+
T Consensus       137 ~g~~l~~~~~----~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          137 LGNSFAHLPD----S----KGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             CTTCGGGSCC----S----SSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cChHHhhcCc----c----ccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            8 78887610    0    011356889999999999999999987654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.68  E-value=3.5e-16  Score=126.00  Aligned_cols=112  Identities=25%  Similarity=0.349  Sum_probs=92.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------CCCceEEEEcccCCCC----CC--CCc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GYKEVKVLEADMLDLP----FS--NDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~~~~i~~~~~d~~~~~----~~--~~~   67 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....       ...++.++++|+...+    ++  .++
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  114 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC  114 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred             CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence            4689999999999999998765459999999999999999987653       2347899999998865    43  458


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ||+|+++.++|+++           .+.++...+++++.++|+|||.+++.++...
T Consensus       115 fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A          115 FDICSCQFVCHYSF-----------ESYEQADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             EEEEEEETCGGGGG-----------GSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             EEEEEEecchhhcc-----------CCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence            99999999998763           2446778999999999999999998877643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=5.1e-17  Score=127.68  Aligned_cols=101  Identities=17%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.      ++.++++|+.++++++++||+|++..++|++
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  107 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIHHF  107 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGGGC
T ss_pred             CCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHhhc
Confidence            46899999999999999998665 9999999999988775432      7899999999988888999999999998876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                     .+..++++++.++|| ||++++.++..+.
T Consensus       108 ---------------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A          108 ---------------SHLEKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             ---------------SSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             ---------------cCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence                           567899999999999 9998888876443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=1.6e-16  Score=125.82  Aligned_cols=100  Identities=24%  Similarity=0.405  Sum_probs=87.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++.     +++.+.++|+..+++ .++||+|++..+++++
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~  130 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV-DKPLDAVFSNAMLHWV  130 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC-SSCEEEEEEESCGGGC
T ss_pred             CCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc-CCCcCEEEEcchhhhC
Confidence            46899999999999999998655 9999999999999998774     478999999998776 5789999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .+..++++++.++|+|||++++..+..
T Consensus       131 ---------------~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          131 ---------------KEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ---------------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                           456789999999999999999877654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.68  E-value=2.3e-16  Score=125.28  Aligned_cols=105  Identities=17%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++. +. +|+++|+++.+++.+++++...+. +++.++.+|+.+++   ++||+|++..+++
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~  140 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE  140 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             cCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchh
Confidence            468999999999999999844 55 999999999999999999887663 47999999997764   7899999999887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++             ..++...+++++.++|||||.+++.++..
T Consensus       141 ~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          141 HF-------------GHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             GT-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             hc-------------ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            76             22567899999999999999999877654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.68  E-value=4.8e-16  Score=125.30  Aligned_cols=107  Identities=15%  Similarity=0.204  Sum_probs=92.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++....+. +++.++++|+.+++   ++||+|++..+++
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~  166 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE  166 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             cCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence            468999999999999999887 66 999999999999999999887664 46999999998764   7899999999888


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      ++             ..++..++++++.++|+|||++++.++..+.
T Consensus       167 ~~-------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          167 HF-------------GHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             GT-------------CGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             hc-------------CHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            76             2357889999999999999999988776543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.67  E-value=3.8e-16  Score=124.26  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             CCcEEEecCCCChhhHH-HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEG-LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~-l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++.. +++....+|+++|+++++++.|+++++..+..+++++++|+..++  +++||+|++....  
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~~--  198 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAALA--  198 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTTC--
T ss_pred             cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCCc--
Confidence            57999999999987654 444322399999999999999999998777778999999998865  6889999975431  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                      ++..++++++.++|||||++++...
T Consensus       199 ----------------~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          199 ----------------EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             ----------------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ----------------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence                            4567899999999999999998764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.67  E-value=3e-16  Score=118.74  Aligned_cols=102  Identities=18%  Similarity=0.304  Sum_probs=87.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++...+..++.++++|+...  ..++||+|+++..++  
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~--  136 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILAE--  136 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHH--
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcHH--
Confidence            4689999999999999998876569999999999999999999888776699999998764  358899999876553  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      ...++++++.++|+|||++++.++..
T Consensus       137 ----------------~~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          137 ----------------ILLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             ----------------HHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             ----------------HHHHHHHHHHHhcCCCCEEEEEecCc
Confidence                            35789999999999999999875543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=121.60  Aligned_cols=111  Identities=18%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhh------cCCCceEEEEcccCC-CC--CCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL------KGYKEVKVLEADMLD-LP--FSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~------~~~~~i~~~~~d~~~-~~--~~~~~~D~v   71 (201)
                      .+|||+|||+|.++..++...+. .|+|+|+++.+++.+++++..      .+.+++.++++|+.. ++  ++.++||.|
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v  127 (235)
T 3ckk_A           48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM  127 (235)
T ss_dssp             EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred             CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence            47999999999999999988554 899999999999999887653      345789999999986 55  667899998


Q ss_pred             EeccccceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++.         +++||.+..++...  ...+++++.++|+|||.+++.+..
T Consensus       128 ~~~---------~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          128 FFL---------FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEE---------SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEe---------CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            752         35677654432222  257999999999999999987643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.67  E-value=7.7e-16  Score=119.02  Aligned_cols=105  Identities=21%  Similarity=0.329  Sum_probs=89.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc-ccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA-TMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~l~~   79 (201)
                      +.+|||+|||+|.++..+++.  .+++++|+++.+++.++++....+ .++.++++|+.+++++ ++||+|++.. ++++
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP-EPVDAITILCDSLNY  109 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS-SCEEEEEECTTGGGG
T ss_pred             CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC-CCcCEEEEeCCchhh
Confidence            368999999999999999887  499999999999999999987655 4789999999887765 7899999875 7776


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +            .+.++..++++++.++|+|||.+++...+
T Consensus       110 ~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A          110 L------------QTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             C------------CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c------------CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            5            24467889999999999999999876544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.67  E-value=9.3e-16  Score=114.24  Aligned_cols=107  Identities=18%  Similarity=0.343  Sum_probs=90.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+.++  +.++++|+.+ ..+.++||+|+++..++
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  130 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIR  130 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCST
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcc
Confidence            46899999999999999988844 99999999999999999998877666  9999999887 34467899999876654


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +              .......+++++.++|+|||.+++......
T Consensus       131 ~--------------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          131 A--------------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             T--------------CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             c--------------chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            3              236778999999999999999999887653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.66  E-value=9.6e-16  Score=119.36  Aligned_cols=104  Identities=22%  Similarity=0.396  Sum_probs=87.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc-cce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT-MEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~-l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+. ++.++++|+.+++.+ ++||+|++... +++
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            36899999999999999999876 999999999999999999877654 789999999987654 68999998643 332


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .             +.++..++++++.++|+|||.+++...
T Consensus       119 ~-------------~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          119 F-------------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-------------CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            2             346788999999999999999887543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1.7e-16  Score=123.16  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=89.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-----CceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++..   ..++.++++|+.+++...     ..||+|++..
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEEcc
Confidence            46899999999999999999888 89999999999999998863   247999999998754221     2489999999


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++|++             ..++..++++++.++|+|||++++.++..+
T Consensus       133 ~~~~~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          133 GFHHI-------------PVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             SSTTS-------------CGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             hhhcC-------------CHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            98876             335788999999999999999998877643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.66  E-value=3.1e-16  Score=129.83  Aligned_cols=105  Identities=22%  Similarity=0.326  Sum_probs=90.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhc-----C---CCceEEEEcccCCC------CCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLK-----G---YKEVKVLEADMLDL------PFS   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~-----~---~~~i~~~~~d~~~~------~~~   64 (201)
                      +.+|||+|||+|.++..+++.. +. +|+++|+++.+++.+++++...     +   .+++.++++|+.++      +++
T Consensus        84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~  163 (383)
T 4fsd_A           84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP  163 (383)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred             CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence            4689999999999999998862 33 9999999999999999987543     1   25899999999886      788


Q ss_pred             CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++||+|+++.+++++               .+..++++++.++|||||++++.+.
T Consensus       164 ~~~fD~V~~~~~l~~~---------------~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          164 DSSVDIVISNCVCNLS---------------TNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             TTCEEEEEEESCGGGC---------------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEEEEccchhcC---------------CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            8899999999998876               4568999999999999999998754

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.66  E-value=1.3e-15  Score=125.32  Aligned_cols=107  Identities=18%  Similarity=0.245  Sum_probs=92.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC--CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL--PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+. ++++++.+|+.+.  +++ ++||+|++..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v  257 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF  257 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence            368999999999999999987655 9999999 9999999999877664 5799999999875  355 78999999999


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +|++             +.++..++++++++.|+|||++++.+...
T Consensus       258 lh~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          258 LDCF-------------SEEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             STTS-------------CHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             hhhC-------------CHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            9876             44677899999999999999999887644

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.66  E-value=5.7e-16  Score=119.50  Aligned_cols=104  Identities=20%  Similarity=0.355  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec-cccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.     +++.++++|+.+++. .++||+|+|. .++++
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~  113 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY  113 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred             CCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence            46899999999999999998877 9999999999999998874     468999999988776 6789999964 47776


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +            .+.++..++++++.++|+|||.+++.++..+
T Consensus       114 ~------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          114 L------------KTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             C------------CSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             c------------CCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            6            2446788999999999999999998765443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.66  E-value=1.6e-15  Score=115.06  Aligned_cols=101  Identities=12%  Similarity=0.102  Sum_probs=84.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+.+ ++.++++|+.........||+|++...+  
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~--  132 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG--  132 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred             CCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence            46899999999999999999844 9999999999999999999888877 8999999998732233579999975432  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                       +.. +++++.++|+|||++++.....
T Consensus       133 -----------------~~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          133 -----------------SQA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             -----------------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             -----------------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence                             234 9999999999999999877654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.66  E-value=5.2e-16  Score=127.05  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|++ ++++.++++....+.++ +.++++|+.+++++.++||+|++..+.+.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            46899999999999999999976699999999 49999999988877544 99999999998888889999999765554


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +            ........+++++.++|+|||.++
T Consensus       146 l------------~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          146 L------------FYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             B------------TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             c------------cCchhHHHHHHHHHHhCCCCCEEc
Confidence            4            133567889999999999999986

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.7e-16  Score=123.09  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||||||+|..+..+++..+.+++++|+++.+++.++++....+ .++.++.+|+...  ++++++||.|+......
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~  139 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcccccccCCceEEEeeeec
Confidence            56999999999999999988766699999999999999999887765 4788999998753  46788999998532211


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..          ...+..+...+++++.++|||||+|++..
T Consensus       140 ~~----------~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          140 SE----------ETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             BG----------GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cc----------chhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            10          00244678899999999999999998753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.65  E-value=8.9e-16  Score=115.36  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D~v~~~~~   76 (201)
                      +++|||+|||+|.++..+++. ++ .+|+++|+++.+++.+++++...+. ++++++++|+..++ ...++||+|+++..
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  102 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG  102 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence            468999999999999999887 33 3999999999999999999988775 68999999988764 55688999998654


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +  +  ...+.+.  .....+..++++++.++|+|||++++..+.
T Consensus       103 ~--~--~~~~~~~--~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          103 Y--L--PSGDHSI--STRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             B--C--TTSCTTC--BCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             c--c--cCccccc--ccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            4  0  0011100  012345678999999999999999988754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.65  E-value=1.6e-15  Score=114.90  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=85.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+.++++++++|+.+ ++...++||+|+++..++ 
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-  133 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-  133 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC-
Confidence            468999999999999988888766999999999999999999988877789999999876 444567899999865432 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~~~  121 (201)
                                     ......+++.+.+  +|+|||.+++....
T Consensus       134 ---------------~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          134 ---------------RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             ---------------TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ---------------CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence                           1344567777755  59999999877654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=1.5e-15  Score=113.24  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=88.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec-cccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l~~   79 (201)
                      +.+|||+|||+|.++..++..+. +++++|+++.+++.++++.     +++.++++|+...+++.++||+|+++ .++++
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  120 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGNVMGF  120 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred             CCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence            46899999999999999998866 9999999999999998875     36899999999877777899999997 56665


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +             ..++..++++++.++|+|||.+++......
T Consensus       121 ~-------------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~  151 (195)
T 3cgg_A          121 L-------------AEDGREPALANIHRALGADGRAVIGFGAGR  151 (195)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             c-------------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            4             345678999999999999999998766543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.65  E-value=2.1e-15  Score=115.95  Aligned_cols=122  Identities=12%  Similarity=0.069  Sum_probs=89.1

Q ss_pred             CCcEEEecCC-CChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCG-NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G-~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+||| +|.++..++.....+|+++|+++.+++.+++++...+. +++++++|+..+ +++.++||+|+++..++
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp~~  134 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPPYY  134 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence            4789999999 99999999988323999999999999999999988876 899999997543 35568999999875543


Q ss_pred             eeeec----CCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVN----SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ..-..    ....|...........++++++.++|+|||++++.....+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (230)
T 3evz_A          135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE  183 (230)
T ss_dssp             ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred             CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence            32000    0000000111223458899999999999999998765543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.65  E-value=1e-15  Score=125.44  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++.+++..+ +. +++|+|+++.+++.+++++...+++++++.++|+.+++.+...||+|+++..++
T Consensus       204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg  283 (354)
T 3tma_A          204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG  283 (354)
T ss_dssp             TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred             CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence            4689999999999999999875 33 999999999999999999998887789999999998876667799999865543


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ....       ..........++++++.++|+|||.+++.+...
T Consensus       284 ~r~~-------~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          284 LRLG-------RKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             C-----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CccC-------CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            3210       001112335789999999999999999987654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.65  E-value=5e-16  Score=120.58  Aligned_cols=100  Identities=13%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++..... +|+++|+++.+++.++++....+.++++++++|+.+++..   .++||+|++..+
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~  150 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV  150 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence            468999999999999999864333 9999999999999999998888777899999999876543   578999998542


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                         .+...+++.+.++|+|||.+++..
T Consensus       151 -------------------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          151 -------------------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             -------------------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -------------------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence                               346789999999999999998764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.65  E-value=8.5e-16  Score=125.34  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=87.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++ +++.+++++...+. +++.++++|+.+++++.++||+|++..+.+.
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~  143 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  143 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence            468999999999999999998766999999996 99999999888775 6899999999988887789999998764333


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +            .+......++.++.++|+|||.++
T Consensus       144 l------------~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          144 L------------LFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             B------------TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             c------------cCHHHHHHHHHHHHhhcCCCcEEE
Confidence            3            133567889999999999999987

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.65  E-value=3.9e-15  Score=112.56  Aligned_cols=100  Identities=17%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+. +++++|+++.+++.++++....+.+++.++++|+.+.+ +.++||+|+++..   
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc---
Confidence            468999999999999999887433 99999999999999999998887767999999998765 4578999997432   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                      .....+++++.++|+|||.+++...
T Consensus       142 ----------------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 ----------------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ----------------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             ----------------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence                            2357899999999999999988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.65  E-value=2.5e-15  Score=110.99  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCC-CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLD-LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++...+. +++.++++|+.+ ++...++||+|+++..++
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence            468999999999999999988655999999999999999999987775 379999999876 333346799999865442


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEecCCcc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~~~~~  124 (201)
                                      ......+++.+.  ++|+|||.+++.......
T Consensus       112 ----------------~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A          112 ----------------KETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             ----------------cchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence                            234456667776  999999999987765443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.64  E-value=1.6e-15  Score=125.50  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=92.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..++. +++++++|+.+...+.++||+|+++..+|+.
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~  311 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTEEARFDIIVTNPPFHVG  311 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred             CCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence            36899999999999999999876 999999999999999999988775 4899999998876656899999998877652


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .          ........++++++.++|+|||.++++....
T Consensus       312 ~----------~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          312 G----------AVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             C----------SSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             c----------cccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            0          0123677899999999999999999876543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.64  E-value=4.9e-16  Score=121.62  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=88.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-----------------------------Cce-
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-----------------------------KEV-   51 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-----------------------------~~i-   51 (201)
                      .+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+.                             .++ 
T Consensus        58 ~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~  137 (265)
T 2i62_A           58 ELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIK  137 (265)
T ss_dssp             EEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEE
T ss_pred             CEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhhe
Confidence            58999999999999998887666899999999999999988765320                             127 


Q ss_pred             EEEEcccCCCC-CCC---CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           52 KVLEADMLDLP-FSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        52 ~~~~~d~~~~~-~~~---~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .++++|+.+.. ++.   ++||+|++..++|++.           .+..+..++++++.++|+|||.+++.+..
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC-----------PDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             eEEEeeeccCCCCCccccCCccEEEEhhhhhhhc-----------CChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            89999998754 244   7899999999998551           13367889999999999999999987643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.64  E-value=1.7e-15  Score=114.87  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...+.+++.++.+|+.......++||+|++..+++++
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  156 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEI  156 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhh
Confidence            46899999999999999998854 99999999999999999998888778999999998765556789999998887665


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     .      +++.+.|+|||++++....
T Consensus       157 ---------------~------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          157 ---------------P------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ---------------C------THHHHTEEEEEEEEEEECS
T ss_pred             ---------------h------HHHHHhcccCcEEEEEEcC
Confidence                           1      1578999999999987654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.64  E-value=3.3e-15  Score=121.22  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=91.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+. ++++++.+|+. .+.+. +||+|++.+++|+
T Consensus       171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~  247 (332)
T 3i53_A          171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHD  247 (332)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGG
T ss_pred             CEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhcc
Confidence            58999999999999999987655 8999999 9999999999887664 57999999997 35544 8999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +             ..++..++++++++.|+|||++++.+...+
T Consensus       248 ~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  278 (332)
T 3i53_A          248 W-------------DDLSAVAILRRCAEAAGSGGVVLVIEAVAG  278 (332)
T ss_dssp             S-------------CHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence            6             345678999999999999999999876544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=1.2e-15  Score=119.88  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-----CCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-----SNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++....      .++.++.++..     ..++||+|+++.
T Consensus        46 g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~  118 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLNDR  118 (261)
T ss_dssp             TCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEEES
T ss_pred             cCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEEhh
Confidence            46899999999999999999877 9999999999999999987543      23333333322     146899999999


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++|++             ..++...+++++.++| |||++++...
T Consensus       119 ~l~~~-------------~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          119 LINRF-------------TTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CGGGS-------------CHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhHhC-------------CHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            88876             3467788999999999 9999987643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.63  E-value=1.2e-15  Score=119.36  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++...+. +|+++|+++.+++.++++....+..+++++++|+.+++..   .++||+|++..+
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~  160 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV  160 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence            468999999999999999887444 9999999999999999999988877899999999876532   478999998543


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                         .+...+++.+.++|+|||++++...
T Consensus       161 -------------------~~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          161 -------------------APLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             -------------------CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             -------------------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence                               2346899999999999999887653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.62  E-value=1e-14  Score=112.24  Aligned_cols=141  Identities=14%  Similarity=0.103  Sum_probs=103.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|+|+|||+|.++..++..++. +|+++|+++.+++.|++++..+++. ++.+.++|+.....+..+||+|+..+.  
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm--   99 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM--   99 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE--
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC--
Confidence            468999999999999999998765 8999999999999999999988864 599999999875444347999875433  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG  158 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (201)
                                     ....+..+++...+.|+++|++++...........++...++....+.-...++..|-.....++
T Consensus       100 ---------------Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A          100 ---------------GGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG  164 (230)
T ss_dssp             ---------------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred             ---------------chHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence                           22457889999999999999999877655443334444444443333333445555555555555

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.62  E-value=2.7e-15  Score=110.63  Aligned_cols=103  Identities=11%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCC-CCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~-~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++...+. +|+++|+++.+++.+++++...+.+ ++ ++.+|+.. ++...++||+|++...+
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~  104 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGL  104 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCcc
Confidence            358999999999999999888533 9999999999999999999887766 78 88888754 33222789999987665


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++                   ..+++++.++|+|||++++.....+
T Consensus       105 ~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~  131 (178)
T 3hm2_A          105 TA-------------------PGVFAAAWKRLPVGGRLVANAVTVE  131 (178)
T ss_dssp             TC-------------------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred             cH-------------------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence            32                   4689999999999999998776543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.62  E-value=3.6e-15  Score=110.77  Aligned_cols=108  Identities=16%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC----CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP----FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+. ++++++++|+.+..    ...++||+|+++.
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~  124 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP  124 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECC
Confidence            468999999999999998887655999999999999999999887764 47999999987632    1257899999876


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHH--hhcccCCcEEEEEecCCcc
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGV--HRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~~~~~~~~~  124 (201)
                      .++.                ......++.+  .++|+|||.+++.......
T Consensus       125 ~~~~----------------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          125 PYAK----------------QEIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             CGGG----------------CCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             CCCc----------------hhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            5431                2234555556  8899999999987765544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.62  E-value=1.6e-15  Score=118.90  Aligned_cols=101  Identities=30%  Similarity=0.419  Sum_probs=84.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++..    .  .++++|+..++++.++||+|++..++.++
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  127 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----K--NVVEAKAEDLPFPSGAFEAVLALGDVLSY  127 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----S--CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC----C--CEEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence            46899999999999999998876 89999999999999988753    1  28899998888878899999997655433


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .              .+..++++++.++|+|||.+++..++.
T Consensus       128 ~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          128 V--------------ENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             C--------------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             c--------------ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            1              337899999999999999999877653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.62  E-value=9.4e-16  Score=117.07  Aligned_cols=101  Identities=20%  Similarity=0.330  Sum_probs=83.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CCC-CCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFS-NDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++      .++.+...|+.++   +.. ..+||+|++..+
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~  125 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANFA  125 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECch
Confidence            46899999999999999999876 999999999999999876      3667888887765   433 345999999888


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      ++ .               .+..++++++.++|+|||.+++.++....
T Consensus       126 l~-~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  157 (227)
T 3e8s_A          126 LL-H---------------QDIIELLSAMRTLLVPGGALVIQTLHPWS  157 (227)
T ss_dssp             CC-S---------------SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred             hh-h---------------hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence            86 3               34578999999999999999998876543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.62  E-value=1.7e-15  Score=125.12  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|++ .+++.+++++...+.. ++.++++|+.+++++ ++||+|++....+.
T Consensus        64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~  141 (376)
T 3r0q_C           64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYF  141 (376)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTT
T ss_pred             CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhc
Confidence            47899999999999999999977799999999 9999999998887753 499999999988776 88999999765555


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +            .+......+++.+.++|+|||.+++.
T Consensus       142 l------------~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          142 L------------LRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             B------------TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             c------------cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            4            12245778999999999999998753

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.62  E-value=1.5e-15  Score=120.94  Aligned_cols=108  Identities=16%  Similarity=0.243  Sum_probs=80.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC--------------C----------------Cc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--------------Y----------------KE   50 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~--------------~----------------~~   50 (201)
                      +.+|||+|||+|..+..++.....+|+++|+++.+++.+++++....              .                ..
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  151 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV  151 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred             CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence            46899999999996554444333499999999999999988654211              0                01


Q ss_pred             eEEEEcccCC-CCC-----CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           51 VKVLEADMLD-LPF-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        51 i~~~~~d~~~-~~~-----~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +.++.+|+.. +++     +.++||+|+++.+++++.           ...++..++++++.++|||||++++..
T Consensus       152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----------PDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4677778877 443     346799999999998741           113678999999999999999999864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.62  E-value=8e-16  Score=122.77  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=80.4

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCC-eE--EEEECCHHHHHHHHHHHhhc-CCCceEE--EEcccCCCC------CCC
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGIT-AI--TCIDLSAVAVEKMQERLLLK-GYKEVKV--LEADMLDLP------FSN   65 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~-~v--~~vD~~~~~~~~~~~~~~~~-~~~~i~~--~~~d~~~~~------~~~   65 (201)
                      .+|||+|||+|.++..++    ...+. .+  +++|+|++|++.++++.... +.+++.+  ..+++..++      +++
T Consensus        54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (292)
T 2aot_A           54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL  133 (292)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred             CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence            479999999998765432    32222 33  99999999999999987653 3455554  455554332      457


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++||+|++..++|++               ++..+++++++++|||||++++.....
T Consensus       134 ~~fD~V~~~~~l~~~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          134 QKWDFIHMIQMLYYV---------------KDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             CCEEEEEEESCGGGC---------------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CceeEEEEeeeeeec---------------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            899999999999887               567899999999999999999876543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=9.8e-16  Score=114.00  Aligned_cols=133  Identities=14%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++...+. +|+++|+|+.|++.+++++...+.. ++.+  .|.... .+.++||+|++..++|
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhHHH
Confidence            468999999999999999888554 9999999999999999999988865 4555  555443 3468899999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe---cCCcc------ccccccc-CCCCceEEEEEEeCCee
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS---FGQPH------FRRPFFN-APQFTWSVEWITFGDGF  148 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~---~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~  148 (201)
                      ++               ++.+..+.++.+.|+|||.++-..   ...+.      ....+.. .....|.......++.+
T Consensus       127 lL---------------~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~nEl  191 (200)
T 3fzg_A          127 VL---------------KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGNEL  191 (200)
T ss_dssp             HH---------------HHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEE
T ss_pred             hh---------------hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCceE
Confidence            77               566677779999999999877543   11111      1111111 24556888888888877


Q ss_pred             eEE
Q 028957          149 HYF  151 (201)
Q Consensus       149 ~~~  151 (201)
                      .|.
T Consensus       192 ~y~  194 (200)
T 3fzg_A          192 VYI  194 (200)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.61  E-value=4.6e-15  Score=120.26  Aligned_cols=108  Identities=15%  Similarity=0.268  Sum_probs=91.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|++ .+++.+++++...+.. +++++.+|+.+.+++. .||+|++..++|
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~D~v~~~~~l~  243 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN-DYDLVLLPNFLH  243 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS-CEEEEEEESCGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCcEEEEcchhc
Confidence            368999999999999999988544 99999999 9999999998776643 6999999998766654 499999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++             ..++..++++++.++|+|||++++.+...+
T Consensus       244 ~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          244 HF-------------DVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             GS-------------CHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             cC-------------CHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            76             346778999999999999999998876544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.61  E-value=1.9e-15  Score=119.08  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHH------HHHHHHHHHhhcCC-CceEEEEcc---cCCCCCCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAV------AVEKMQERLLLKGY-KEVKVLEAD---MLDLPFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~------~~~~~~~~~~~~~~-~~i~~~~~d---~~~~~~~~~~~   68 (201)
                      +.+|||+|||+|.++..+++. ++ .+|+++|+++.      +++.+++++...+. +++.++++|   ...++++.++|
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  123 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF  123 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence            468999999999999999988 44 39999999997      99999999887664 579999998   33445667899


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |+|++..+++++               .+...+++.+.++++|||++++.++..+
T Consensus       124 D~v~~~~~l~~~---------------~~~~~~~~~~~~l~~~gG~l~~~~~~~~  163 (275)
T 3bkx_A          124 DRVVLAHSLWYF---------------ASANALALLFKNMAAVCDHVDVAEWSMQ  163 (275)
T ss_dssp             SEEEEESCGGGS---------------SCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred             EEEEEccchhhC---------------CCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            999999998876               2334577777777788999999876643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.61  E-value=1.8e-15  Score=117.89  Aligned_cols=109  Identities=19%  Similarity=0.364  Sum_probs=84.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc--------CCCceEEEEcccCC-CC--CCCCcee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK--------GYKEVKVLEADMLD-LP--FSNDCFD   69 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~-~~--~~~~~~D   69 (201)
                      .+|||+|||+|.++..++..++. .|+|+|+++.+++.+++++...        +.+++.++++|+.+ ++  ++.+++|
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d  130 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS  130 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence            57999999999999999998765 8999999999999999987765        56789999999986 44  6677888


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEe
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .|+..         +++||.+.......  ...+++++.++|+|||.+++.+
T Consensus       131 ~v~~~---------~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          131 KMFFC---------FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             EEEEE---------SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEE---------CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            88742         24677543322111  1589999999999999999865

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.61  E-value=6.1e-15  Score=130.23  Aligned_cols=107  Identities=18%  Similarity=0.316  Sum_probs=90.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhc------CCCceEEEEcccCCCCCCCCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLK------GYKEVKVLEADMLDLPFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~~~~D~v~   72 (201)
                      +.+|||+|||+|.++..+++.+.  .+|+|+|+++.+++.|++++...      +.+++.++++|+..+++..++||+|+
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV  801 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT  801 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence            46899999999999999999873  39999999999999999876532      45689999999999888889999999


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +..+++++             .......+++++.++|+|| .+++.+++
T Consensus       802 ~~eVLeHL-------------~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          802 CLEVIEHM-------------EEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             EESCGGGS-------------CHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             EeCchhhC-------------ChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            99999887             3345668999999999998 76666543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.61  E-value=5e-15  Score=116.22  Aligned_cols=120  Identities=12%  Similarity=0.143  Sum_probs=87.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++...+.. +++++++|+.+..  ++.++||+|+++..+
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy  129 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY  129 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence            4689999999999999999886669999999999999999999887754 6999999998764  456899999997554


Q ss_pred             ceee-ecCCCCCCC----CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLF-VNSGDPWNP----QPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~-~~~~~~~~~----~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...- .....|...    .-........+++.+.++|+|||+++++..
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             -----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence            2210 000000000    000113467899999999999999998653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.61  E-value=1.2e-14  Score=112.75  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=102.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||+|.++..++..++. +|+++|+++.+++.|++++..+++. ++.+.++|+.....+..+||+|+..+.  
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm--   99 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM--   99 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE--
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC--
Confidence            468999999999999999998765 8999999999999999999988864 599999999875433335999886432  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG  158 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (201)
                                     ..+.+..+++...+.|+++|++++............+...++....+.....++..|......++
T Consensus       100 ---------------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~  164 (244)
T 3gnl_A          100 ---------------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS  164 (244)
T ss_dssp             ---------------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ---------------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence                           22557889999999999999999876554333333444444433333333445555555555554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.61  E-value=1.8e-14  Score=110.61  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCC-ceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSND-CFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~-~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|.++..++..++. +|+++|+++.+++.|++++..+++. ++.+..+|+.. +++.+ +||+|+..+. 
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~-   93 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGM-   93 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE-
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCC-
Confidence            468999999999999999998765 8999999999999999999998865 59999999865 23333 6998886432 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK  157 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (201)
                                      ....+..+++...+.|+++|++++............+...++....+.-...++..|-.....+
T Consensus        94 ----------------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~  157 (225)
T 3kr9_A           94 ----------------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEA  157 (225)
T ss_dssp             ----------------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ----------------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence                            2244688999999999999999886654433333344444443333333334555555555555


Q ss_pred             CC
Q 028957          158 GK  159 (201)
Q Consensus       158 ~~  159 (201)
                      |.
T Consensus       158 ~~  159 (225)
T 3kr9_A          158 GQ  159 (225)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.61  E-value=3.6e-15  Score=121.02  Aligned_cols=103  Identities=22%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|++ .+++.+++++..++. +++.++.+|+.+++++.++||+|++....+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~  117 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence            46899999999999999999876699999999 589999999887775 4699999999988777789999999765554


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +            .+......++.++.++|+|||.++
T Consensus       118 l------------~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          118 L------------LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             B------------STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             c------------ccHHHHHHHHHHHHhhcCCCeEEE
Confidence            4            123456789999999999999987

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.61  E-value=1.1e-14  Score=120.01  Aligned_cols=107  Identities=17%  Similarity=0.245  Sum_probs=91.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+. ++++++.+|+. .+++. .||+|++..++|
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh  279 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVLH  279 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCGG
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhhc
Confidence            368999999999999999988655 9999999 9999999999887663 57999999998 35554 799999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++             ..+...++++++++.|+|||++++.+...+
T Consensus       280 ~~-------------~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          280 DW-------------DDDDVVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             GS-------------CHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             cC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            76             445667999999999999999999876543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.61  E-value=9.7e-15  Score=119.72  Aligned_cols=107  Identities=13%  Similarity=0.203  Sum_probs=91.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+.+ +++++.+|+.+.+++.  +|+|++..++|
T Consensus       191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~~vlh  267 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILY  267 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEESCGG
T ss_pred             CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEechhc
Confidence            468999999999999999988654 9999999 99999999998876644 5999999998876553  39999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ++             ..+...++++++.++|+|||++++.+...+
T Consensus       268 ~~-------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          268 SA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             GS-------------CHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             cC-------------CHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            76             335688999999999999999988876543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.60  E-value=6.1e-15  Score=116.85  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             CcEEEecCCC---ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----------CCCC
Q 028957            2 TSVLELGCGN---SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSND   66 (201)
Q Consensus         2 ~~vLDlG~G~---G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~   66 (201)
                      .+|||||||+   |.++..+.+..+. +|+++|+|+.|++.+++++...  +++.++++|+.+..           ++..
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            5899999999   9887766665443 9999999999999999988543  47999999997521           3335


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +||+|++..++|++             ..++..++++++.++|+|||++++.+...
T Consensus       157 ~~d~v~~~~vlh~~-------------~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          157 RPAAIMLVGMLHYL-------------SPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             SCCEEEETTTGGGS-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCEEEEEechhhhC-------------CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            89999999999987             22357899999999999999999887664

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.60  E-value=1.7e-15  Score=120.24  Aligned_cols=102  Identities=13%  Similarity=0.135  Sum_probs=86.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++..++..+ ++++++|+.+... .++||+|+++..   
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p---  201 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV---  201 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC---
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc---
Confidence            57899999999999999999877579999999999999999998887654 8999999998765 678999997422   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      .....+++++.++|+|||.+++.++..
T Consensus       202 ----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          202 ----------------VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             ----------------SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ----------------hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence                            122568889999999999999887763

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.60  E-value=4.3e-15  Score=113.60  Aligned_cols=99  Identities=26%  Similarity=0.457  Sum_probs=84.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.       .+++++|+..  .++++++||+|++..+++
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~  104 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDVLE  104 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred             CCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence            4689999999999999999885 49999999999999887653       3788899876  456678999999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++               .+...+++++.++|+|||.+++..+..
T Consensus       105 ~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A          105 HL---------------FDPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             GS---------------SCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             hc---------------CCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            76               345789999999999999999887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.60  E-value=3.6e-15  Score=114.03  Aligned_cols=95  Identities=23%  Similarity=0.317  Sum_probs=82.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..     +++|+++.+++.++++       ++.++++|+..++++.++||+|++..+++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            478999999999999888654     9999999999999875       5789999998888777899999999888765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .+..++++++.++|+|||.+++.....
T Consensus       116 ---------------~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          116 ---------------DDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ---------------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence                           456789999999999999999887654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.60  E-value=9.7e-15  Score=120.15  Aligned_cols=104  Identities=24%  Similarity=0.363  Sum_probs=88.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+.. +++++.+|+.+ +++. .||+|++..++|
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~  259 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVLL  259 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecccc
Confidence            468999999999999999988654 9999999 99999999998877653 79999999876 3443 499999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++             ..+...++++++.++|+|||++++.+.
T Consensus       260 ~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          260 NW-------------SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             GS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CC-------------CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            75             334567999999999999999998876

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=7.9e-15  Score=111.82  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~   75 (201)
                      |.+|||+|||+|.++..+++... .+|+|+|+++.+++.+.+.....  +++.++.+|+...    ++. ++||+|+++.
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~  134 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI  134 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence            46899999999999999988742 39999999999887776655443  4788888998763    343 7899999862


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                 .......+++++.++|||||++++..
T Consensus       135 ~-----------------~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          135 A-----------------QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             C-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-----------------ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            1                 11344567999999999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.59  E-value=5.3e-15  Score=109.93  Aligned_cols=102  Identities=19%  Similarity=0.312  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCC-CceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSN-DCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++...+. +++.+.++|+.. .++. ++||+|++...++
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~  111 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGG  111 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTT
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchH
Confidence            4689999999999999999888 5999999999999999999887775 689999999876 2222 5899999876543


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                        ....+++++.++|+|||.+++..+..
T Consensus       112 ------------------~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          112 ------------------ELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             ------------------CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             ------------------HHHHHHHHHHHhcCCCcEEEEEecCc
Confidence                              34789999999999999999877643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=7.7e-15  Score=121.14  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC---ceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK---EVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~---~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      .+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++..++..   +++++.+|+.+ +++.++||+|+++..+
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF  302 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCc
Confidence            68999999999999999998644 9999999999999999999887643   58889999887 4566799999998887


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |...      +.    ......++++++.++|+|||+++++.....
T Consensus       303 h~~~------~~----~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          303 HQQH------AL----TDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             -----------------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             ccCc------cc----CHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            6430      00    112345799999999999999998765543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.59  E-value=1.7e-16  Score=123.00  Aligned_cols=101  Identities=20%  Similarity=0.215  Sum_probs=84.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...++ +++.++++|+.+.+ +.++||+|+++..+++
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred             CCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence            46899999999999999999875 999999999999999999988876 58999999998765 4578999999877765


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      .               ......+.++.++|+|||.+++.
T Consensus       157 ~---------------~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          157 P---------------DYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             G---------------GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             c---------------chhhhHHHHHHhhcCCcceeHHH
Confidence            4               23333666788999999986643

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.59  E-value=9.3e-15  Score=119.40  Aligned_cols=108  Identities=15%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.++++....+. ++++++.+|+.+.+ +..+.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            468999999999999999988655 9999999 8899999998877664 46999999998765 134669999999999


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      |++             ..++..++++++++.|+|||++++.+...
T Consensus       259 h~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (352)
T 3mcz_A          259 HYF-------------DAREAREVIGHAAGLVKPGGALLILTMTM  290 (352)
T ss_dssp             GGS-------------CHHHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             ccC-------------CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            876             44567899999999999999999887543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.58  E-value=1e-14  Score=119.36  Aligned_cols=102  Identities=18%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++ +++.++++++..+. ++++++.+|+.+++++ ++||+|++...+++
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~  128 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM  128 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTT
T ss_pred             cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhc
Confidence            468999999999999999988766999999996 88999998887775 6799999999887655 68999999877665


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      +             ..+.....+.++.+.|+|||.+++
T Consensus       129 ~-------------~~~~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          129 L-------------FNERMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             B-------------TTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             C-------------ChHHHHHHHHHHHhhcCCCeEEEE
Confidence            5             124456778889999999999884

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.58  E-value=1.6e-14  Score=111.48  Aligned_cols=100  Identities=9%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D~v~~~~   75 (201)
                      |++|||+|||+|.++..++.. |+. +|+++|+++++++.++++....  +++..+.+|+...   +....++|+|++..
T Consensus        78 G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~  155 (233)
T 4df3_A           78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLYADV  155 (233)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEEEec
Confidence            689999999999999999987 665 9999999999999998887654  4899999988753   34567899888532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .                 ...+...++.++.+.|||||++++..
T Consensus       156 ~-----------------~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          156 A-----------------QPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             C-----------------CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-----------------CChhHHHHHHHHHHhccCCCEEEEEE
Confidence            1                 12456789999999999999988764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.58  E-value=7.7e-15  Score=113.37  Aligned_cols=100  Identities=18%  Similarity=0.309  Sum_probs=83.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++...+. +|+++|+++.+++.+++++...+.. ++.++++|+... + ...++||+|++...
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence            478999999999999999985433 9999999999999999999887754 899999999764 2 22578999996432


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      .                  .....+++.+.++|+|||.+++.
T Consensus       152 ~------------------~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          152 K------------------AQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             S------------------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             H------------------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            1                  34678999999999999999873

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.58  E-value=5.2e-15  Score=122.17  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=84.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHH-------hhcCC--CceEEEEcccCCCCCCC--Cce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKGY--KEVKVLEADMLDLPFSN--DCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~-------~~~~~--~~i~~~~~d~~~~~~~~--~~~   68 (201)
                      +.+|||||||+|.++..++.. +..+|+|+|+++.+++.|+++.       ...+.  .++.++++|+.++++..  ..+
T Consensus       174 gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~a  253 (438)
T 3uwp_A          174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT  253 (438)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCc
Confidence            468999999999999999865 4447999999999999988754       22332  58999999998876533  469


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |+|+++..++                .++..+.|.+++++|||||+|++.+...+
T Consensus       254 DVVf~Nn~~F----------------~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          254 SVIFVNNFAF----------------GPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             SEEEECCTTC----------------CHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cEEEEccccc----------------CchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            9999876542                15778888999999999999998765443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.57  E-value=2.4e-14  Score=110.03  Aligned_cols=98  Identities=17%  Similarity=0.064  Sum_probs=82.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....+  ++.++++|+.......++||+|++..+++++
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHcC-EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCcHHHH
Confidence            46899999999999999998874 99999999999999999987665  8999999988732235789999998888765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .      +++.++|+|||++++.....
T Consensus       148 ---------------~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          148 ---------------L------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             ---------------C------HHHHHTEEEEEEEEEEECSS
T ss_pred             ---------------H------HHHHHHcCCCcEEEEEEcCC
Confidence                           1      35788999999999886543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.57  E-value=1.2e-14  Score=117.45  Aligned_cols=99  Identities=17%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+.  .+|+++|+++++++.+++++...+.+++.++.+|+.+.....++||+|++..+++
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVD  155 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHH
Confidence            47899999999999999998754  2699999999999999999988887789999999987544457899999988887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++               .      +++.+.|+|||++++...
T Consensus       156 ~~---------------~------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          156 EV---------------P------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CC---------------C------HHHHHHEEEEEEEEEEBC
T ss_pred             HH---------------H------HHHHHhcCCCcEEEEEEC
Confidence            65               1      467889999999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=6.2e-15  Score=107.87  Aligned_cols=105  Identities=13%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C-C--CCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-F--SNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.++ .|+++|+++.+++.+++++...+. +++++++|+.+. + .  ..++||+|+++..
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~  119 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAPP  119 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence            46899999999999999999987 599999999999999999887776 889999998763 2 1  1247999998765


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEecCCcc
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~~~~~  124 (201)
                      ++ -                ...++++.+.  ++|+|||.+++.......
T Consensus       120 ~~-~----------------~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          120 YA-M----------------DLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             TT-S----------------CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             Cc-h----------------hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            53 1                1123444444  999999999987765544

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.57  E-value=2.2e-14  Score=117.52  Aligned_cols=105  Identities=19%  Similarity=0.319  Sum_probs=89.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++++...+.. +++++.+|+.+ +++. .||+|++..++|
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~  260 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVLL  260 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCGG
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccccc
Confidence            368999999999999999988655 8999999 99999999998877653 79999999876 3433 499999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++             ..++..++++++.++|+|||++++.+..
T Consensus       261 ~~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          261 NW-------------PDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GS-------------CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CC-------------CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            75             3355679999999999999999988765

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=2.5e-14  Score=111.59  Aligned_cols=102  Identities=20%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCC-CCCC--CCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LPFS--NDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~-~~~~--~~~~D~v~~~   74 (201)
                      +.+|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+.. +++++++|+.. ++..  .++||+|++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            47899999999999999998743  39999999999999999999887754 79999999875 2221  3489999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                  ......+++++.++|+|||.+++...
T Consensus       144 ~~------------------~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          144 AD------------------KPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             SC------------------GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             Cc------------------hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            32                  24567899999999999999887544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=1.5e-14  Score=113.65  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhh---cCCC-ceEEEEcccCCC-------CCCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLL---KGYK-EVKVLEADMLDL-------PFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~---~~~~-~i~~~~~d~~~~-------~~~~~~~   68 (201)
                      +.+|||+|||+|.++..++...+. +|+++|+++.+++.+++++..   .+.. ++.++++|+.+.       .++.++|
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            358999999999999999988654 999999999999999999887   6654 599999999876       2456789


Q ss_pred             eEEEeccccceeeecCCCCCC--CCC--ccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           69 DVVIEKATMEVLFVNSGDPWN--PQP--ETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+|+++..+...- ....|..  ...  ........+++.+.++|+|||+++++..
T Consensus       117 D~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          117 HHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             EEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9999874432110 0000000  000  0112367899999999999999987653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.57  E-value=4.7e-15  Score=116.22  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...++.. +.+.++|+... ++.++||+|+++...   
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~-~~~~~fD~Vv~n~~~---  194 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA-LPFGPFDLLVANLYA---  194 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH-GGGCCEEEEEEECCH---
T ss_pred             CCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc-CcCCCCCEEEECCcH---
Confidence            46899999999999999999888 9999999999999999999887765 89999998762 335789999986543   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                     .....+++++.++|+|||++++....
T Consensus       195 ---------------~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          195 ---------------ELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             ---------------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---------------HHHHHHHHHHHHHcCCCCEEEEEeec
Confidence                           34578999999999999999987554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.56  E-value=1.4e-14  Score=117.44  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|..+..+++..+. +++++|+ +.+++.+++++...+ .++++++.+|+.+ +++ ++||+|++..++|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence            48999999999999999987554 9999999 999999998876544 2479999999987 554 67999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +             ..+...++++++.+.|+|||++++.+...
T Consensus       246 ~-------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          246 L-------------DEAASLRLLGNCREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             C-------------CHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            5             34566799999999999999999987653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.56  E-value=1.3e-14  Score=114.85  Aligned_cols=104  Identities=19%  Similarity=0.292  Sum_probs=81.3

Q ss_pred             CcEEEecCCCCh----hhHHHHhc-C--C--CeEEEEECCHHHHHHHHHHHhh-----------------------cC--
Q 028957            2 TSVLELGCGNSR----LSEGLYND-G--I--TAITCIDLSAVAVEKMQERLLL-----------------------KG--   47 (201)
Q Consensus         2 ~~vLDlG~G~G~----~~~~l~~~-~--~--~~v~~vD~~~~~~~~~~~~~~~-----------------------~~--   47 (201)
                      .+|||+|||+|.    ++..+++. +  .  .+|+|+|+|+.+++.|+++.-.                       .+  
T Consensus       107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~  186 (274)
T 1af7_A          107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  186 (274)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence            489999999998    55555554 2  1  2899999999999999986410                       00  


Q ss_pred             ------CCceEEEEcccCCCCCC-CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           48 ------YKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        48 ------~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                            ..++.|.++|+.+.+++ .++||+|+|.++++++             ..+...++++++++.|+|||.+++.
T Consensus       187 ~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-------------~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          187 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-------------DKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-------------CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-------------CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                  02689999999886554 5789999999998776             3456789999999999999999863

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.56  E-value=2.3e-15  Score=114.89  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHH----HhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQER----LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~----~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++..+. +|+++|+++.+++.+.++    ....+.+++.++++|+.+++++.++ |.+....
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~  106 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLM  106 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEES
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEc
Confidence            468999999999999999998544 999999999988864333    3334566899999999998877666 7776322


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ......          .++..+..++++++.++|||||.+++..
T Consensus       107 ~~~~~~----------~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          107 PWGSLL----------RGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             CCHHHH----------HHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhh----------hhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            111100          0011233789999999999999998753

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=119.46  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||||||+|.++..+++.|..+|+++|.++ +++.|+++++.++. ++|.++.+|+..+.++ .++|+|++-..-..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~  161 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG  161 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence            578999999999999999999988999999986 88999999888875 4699999999988776 68999998654443


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      ++            +...+..++....+.|+|||.++
T Consensus       162 l~------------~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          162 LL------------HESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             BT------------TTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             cc------------ccchhhhHHHHHHhhCCCCceEC
Confidence            32            22456788888899999999977

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.56  E-value=1e-14  Score=119.01  Aligned_cols=109  Identities=24%  Similarity=0.340  Sum_probs=89.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.++. +|+++|+++.+++.+++++...+. .++++.+|+....  .++||+|+++..+|.
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV--KGRFDMIISNPPFHD  273 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC--CSCEEEEEECCCCCS
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc--cCCeeEEEECCCccc
Confidence            358999999999999999998765 999999999999999999887764 4678888887643  678999999888874


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ...          .+.....++++++.++|+|||.+++.....
T Consensus       274 g~~----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          274 GMQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             SSH----------HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             Ccc----------CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            210          133567899999999999999999887543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.56  E-value=1.8e-14  Score=112.33  Aligned_cols=114  Identities=17%  Similarity=0.218  Sum_probs=84.3

Q ss_pred             CcEEEecCCCChhhHHHHhc--CCC-eEEEEECCHHHHHHHHHHHhhc---CCCc-------------------------
Q 028957            2 TSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLK---GYKE-------------------------   50 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~--~~~-~v~~vD~~~~~~~~~~~~~~~~---~~~~-------------------------   50 (201)
                      .+|||+|||+|.++..++..  ... +|+++|+++.+++.+++++...   +..+                         
T Consensus        53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (250)
T 1o9g_A           53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR  132 (250)
T ss_dssp             EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhh
Confidence            58999999999999999876  322 8999999999999999887654   3211                         


Q ss_pred             -eE-------------EEEcccCCCCC-----CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957           51 -VK-------------VLEADMLDLPF-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  111 (201)
Q Consensus        51 -i~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  111 (201)
                       +.             +.++|+.+...     ...+||+|+++..++..     ..|.. ........++++++.++|+|
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~-----~~~~~-~~~~~~~~~~l~~~~~~Lkp  206 (250)
T 1o9g_A          133 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER-----THWEG-QVPGQPVAGLLRSLASALPA  206 (250)
T ss_dssp             HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS-----SSSSS-CCCHHHHHHHHHHHHHHSCT
T ss_pred             hhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecc-----ccccc-cccccHHHHHHHHHHHhcCC
Confidence             56             99999876321     34589999997665432     11100 01246678999999999999


Q ss_pred             CcEEEEEecC
Q 028957          112 DGLFISVSFG  121 (201)
Q Consensus       112 gG~l~~~~~~  121 (201)
                      ||++++....
T Consensus       207 gG~l~~~~~~  216 (250)
T 1o9g_A          207 HAVIAVTDRS  216 (250)
T ss_dssp             TCEEEEEESS
T ss_pred             CcEEEEeCcc
Confidence            9999985443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=2.7e-14  Score=108.65  Aligned_cols=101  Identities=21%  Similarity=0.097  Sum_probs=83.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+ + .+|+++|+++.+++.+++++...+.+++.+..+|+.......++||+|++..+++
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  157 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGP  157 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchH
Confidence            4689999999999999998875 3 3999999999999999999887777789999999854322256899999988887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++               .      +++.++|+|||++++.....
T Consensus       158 ~~---------------~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          158 KI---------------P------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             SC---------------C------HHHHHTEEEEEEEEEEESSS
T ss_pred             HH---------------H------HHHHHHcCCCcEEEEEECCC
Confidence            55               1      37889999999999876543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.56  E-value=2.6e-14  Score=109.45  Aligned_cols=106  Identities=17%  Similarity=0.183  Sum_probs=83.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCC-CC-CC----CCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLD-LP-FS----NDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~-~~-~~----~~~~D~v   71 (201)
                      +.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++...+.. +++++++|+.. ++ ..    .++||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            4689999999999999999862  239999999999999999999887754 59999999855 22 22    2689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++....+..               ....++++.+ ++|+|||.+++.....
T Consensus       139 ~~d~~~~~~---------------~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          139 FLDHWKDRY---------------LPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             EECSCGGGH---------------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             EEcCCcccc---------------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            986554332               4455677777 9999999998765543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.56  E-value=1.3e-15  Score=115.37  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=67.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-----CceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++.++. +++++|+++.+++.+++++...+. +++++++|+.+ +++.     ++||+|+++
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~-~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE-WLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEEEC
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh-hhhhhhhccCcccEEEEC
Confidence            468999999999999999998655 999999999999999999877665 78889999876 4433     789999996


Q ss_pred             cccceeeecC-CCC----------CCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNS-GDP----------WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~-~~~----------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..++..-... ..+          +...........++++++.++|+|||++++...
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            5543220000 000          000001112237899999999999999544443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.56  E-value=2.6e-14  Score=110.12  Aligned_cols=98  Identities=11%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC----CCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++....  +++.++.+|+..    .++. ++||+|+.  
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D~v~~--  149 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV-EKVDVIYE--  149 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS-CCEEEEEE--
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC-ccEEEEEE--
Confidence            468999999999999999987 4249999999999999999887654  589999999987    5555 78999983  


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                         .+            ........+++++.++|+|||.+++.
T Consensus       150 ---~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          150 ---DV------------AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---CC------------CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---ec------------CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence               11            01234577899999999999999885

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=2.9e-14  Score=105.17  Aligned_cols=100  Identities=14%  Similarity=0.209  Sum_probs=83.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.+++.++++|+.+ +++.++||+|++..+    
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~----  109 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT----  109 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC----
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc----
Confidence            468999999999999999983 33999999999999999999988877789999999887 555578999998654    


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                     .....+++++.++  |||.+++......
T Consensus       110 ---------------~~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A          110 ---------------KNIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             ---------------SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             ---------------ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence                           2346788888888  9999998876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.55  E-value=1.7e-14  Score=112.52  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++. ++ .+|+++|+++.+++.+++++... +.+++.+..+|+.+.+++.++||+|++..  
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~--  174 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL--  174 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES--
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC--
Confidence            468999999999999999988 53 39999999999999999998776 55689999999988767778899999721  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                        .+..++++++.++|+|||.+++.....
T Consensus       175 ------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          175 ------------------MEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             ------------------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             ------------------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence                              122468999999999999999887654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.55  E-value=1e-14  Score=112.08  Aligned_cols=89  Identities=19%  Similarity=0.307  Sum_probs=76.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC-CCCCC-CCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML-DLPFS-NDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~-~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++     .+++.++++|+. .++++ +++||+|+++.   
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---  119 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSRR---  119 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEES---
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeCC---
Confidence            46899999999999999999866 999999999999999987     247899999994 56776 78999999851   


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                        +...+++++.++|+|||.++
T Consensus       120 ------------------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          120 ------------------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             ------------------CCSGGGGGHHHHEEEEEEEE
T ss_pred             ------------------CHHHHHHHHHHHcCCCcEEE
Confidence                              22467889999999999998

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=1e-14  Score=112.06  Aligned_cols=99  Identities=19%  Similarity=0.336  Sum_probs=81.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCC--CCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL--PFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~--~~~~~~~D~v~~~~   75 (201)
                      .+|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+..  +++++++|+.+.  .++.++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            3899999999999999988632  39999999999999999999887754  799999998763  23357899999743


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..                  .....+++++.++|+|||.+++.
T Consensus       138 ~~------------------~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          138 SP------------------MDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CT------------------TTHHHHHHHHHHHEEEEEEEEET
T ss_pred             cH------------------HHHHHHHHHHHHHcCCCcEEEEe
Confidence            21                  34567899999999999999974

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.54  E-value=1.6e-14  Score=112.80  Aligned_cols=100  Identities=20%  Similarity=0.285  Sum_probs=83.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..++.. ++. +++++|+++.+++.+++++...+.++ ++++++|+.+. ++.++||+|+++.  
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~--  170 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL--  170 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS--
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC--
Confidence            468999999999999999988 533 99999999999999999998877655 99999999864 5667899999731  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                        .+...+++++.++|+|||.+++....
T Consensus       171 ------------------~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          171 ------------------PQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             ------------------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             ------------------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence                              12246899999999999999987654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.54  E-value=1.5e-14  Score=114.40  Aligned_cols=101  Identities=17%  Similarity=0.227  Sum_probs=84.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++. ++ .+|+++|+++.+++.+++++... +.+++.++++|+.+ +++.++||+|++..  
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~~--  187 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIADI--  187 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEECC--
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEcC--
Confidence            468999999999999999987 33 39999999999999999999877 66789999999987 55567899999721  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                        .+..++++++.++|+|||++++.+...
T Consensus       188 ------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          188 ------------------PDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             ------------------SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             ------------------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                              122478999999999999999887654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.54  E-value=2.5e-14  Score=115.47  Aligned_cols=122  Identities=19%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM-   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l-   77 (201)
                      |.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...+.+++.++++|+..++...++||+|++.... 
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs  198 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT  198 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence            4689999999999999999863 2 389999999999999999998888778999999998765445689999974321 


Q ss_pred             --ceeeecCCCCCCCCCcc----HHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 --EVLFVNSGDPWNPQPET----VTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 --~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                        ..+..+.+..|...++.    .....++++++.++|||||++++.+++.
T Consensus       199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence              11100111111111111    1123689999999999999999887653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.54  E-value=3.7e-14  Score=112.21  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+.+++.++++|+... ++.++||+|+++..++.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~  188 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID  188 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence            368999999999999999876433 9999999999999999999887777899999998763 33578999998744321


Q ss_pred             e----------eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 L----------FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .          ...+...+............+++++.+.|+|||.+++..
T Consensus       189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1          000000000001112457889999999999999988764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.53  E-value=6.8e-14  Score=111.13  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=80.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEEC-CHHHHHHHHHHH-----hhcCC-----CceEEEEcccCCCC--C----
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDL-SAVAVEKMQERL-----LLKGY-----KEVKVLEADMLDLP--F----   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~-~~~~~~~~~~~~-----~~~~~-----~~i~~~~~d~~~~~--~----   63 (201)
                      +++|||+|||+|.++..++..+..+|+++|+ ++.+++.++++.     ...+.     +++.+...|+.+..  +    
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  159 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT  159 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence            4689999999999999999887659999999 899999999998     44443     26788877765421  1    


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhccc---C--CcEEEEE
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK---P--DGLFISV  118 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~---~--gG~l~~~  118 (201)
                      +.++||+|++..++++.               .....+++.+.++|+   |  ||.+++.
T Consensus       160 ~~~~fD~Ii~~dvl~~~---------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          160 GLQRFQVVLLADLLSFH---------------QAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             SCSSBSEEEEESCCSCG---------------GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             cCCCCCEEEEeCcccCh---------------HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            35789999987666433               667899999999999   9  9987665

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.53  E-value=1.7e-14  Score=125.13  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||||||+|.++..+++.|. .|+|+|+++.+++.|+.+....+..++++.++++.++  ...+++||+|+|..+++
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            35899999999999999999998 8999999999999999998877645899999999876  35678999999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+            .+ ......+..+.+.|+++|..++...
T Consensus       146 hv------------~~-~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          146 HI------------VH-LHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             HH------------HH-HHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             cC------------CC-HHHHHHHHHHHHHhccccceeeEEe
Confidence            87            11 1112223456677777777665544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.53  E-value=3.5e-14  Score=120.63  Aligned_cols=102  Identities=18%  Similarity=0.294  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++ +++.+++++...++ ++++++.+|+.+++++ ++||+|+++..+++
T Consensus       159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~  236 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM  236 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred             CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence            468999999999999999887656999999998 99999999888775 5799999999887654 58999999876555


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      +             ..+.....+.++.+.|+|||.+++
T Consensus       237 ~-------------~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          237 L-------------FNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             H-------------TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             c-------------CcHHHHHHHHHHHHhcCCCCEEEE
Confidence            4             224556777889999999999884

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=2.7e-14  Score=112.96  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++..++++++.++++|+.+.+. .++||+|++....  
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~--  196 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH--  196 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS--
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc--
Confidence            46899999999999999998843 3999999999999999999998888889999999988733 5689999974321  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                       ....++..+.+.|+|||.+++.++..
T Consensus       197 -----------------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          197 -----------------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             -----------------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             -----------------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence                             33568888999999999999876643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.53  E-value=7e-14  Score=108.02  Aligned_cols=100  Identities=24%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCC-ceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++...+.+++.+..+|+. .+++.. +||+|++..+++.
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~Ii~~~~~~~  170 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGFPPKAPYDVIIVTAGAPK  170 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGGGCCEEEEEECSBBSS
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCCCCCCCccEEEECCcHHH
Confidence            46899999999999999988753589999999999999999998887778999999973 344333 5999999877765


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +                     .+++.+.|+|||++++.....
T Consensus       171 ~---------------------~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          171 I---------------------PEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             C---------------------CHHHHHTEEEEEEEEEEECSS
T ss_pred             H---------------------HHHHHHhcCCCcEEEEEEecC
Confidence            4                     136788999999999876543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=5e-14  Score=108.06  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC------CeEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCC----CCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI------TAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLP----FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~------~~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~----~~~   65 (201)
                      +.+|||+|||+|.++..+++...      .+|+++|+++.+++.+++++...+     .+++.++.+|+....    ...
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  160 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL  160 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence            46899999999999999988743      299999999999999999988765     468999999998754    445


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++||+|++...++.+                     ++++.+.|+|||++++....
T Consensus       161 ~~fD~I~~~~~~~~~---------------------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          161 GLFDAIHVGASASEL---------------------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CCEEEEEECSBBSSC---------------------CHHHHHHEEEEEEEEEEEEE
T ss_pred             CCcCEEEECCchHHH---------------------HHHHHHhcCCCcEEEEEEcc
Confidence            789999987766433                     36778999999999887653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.52  E-value=5.8e-14  Score=107.43  Aligned_cols=102  Identities=16%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C---CCCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F---SNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~---~~~~~D~v~   72 (201)
                      +.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++...+.. +++++++|+... + +   ..++||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            47899999999999999998843  29999999999999999999877754 599999998653 1 1   125799999


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....                  .....+++++.++|+|||.+++...
T Consensus       139 ~d~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          139 IDADK------------------QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             ECSCG------------------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EcCCc------------------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            74332                  4557899999999999998887543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.52  E-value=3.7e-14  Score=115.24  Aligned_cols=117  Identities=16%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCCC----CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLPF----SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~----~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..+++.  ++.++++|+.+...    ..++||+|+++
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            35899999999999999999887 9999999999999999999887765  38999999876421    14689999985


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ......-     +-..-.....+...+++++.++|+|||.+++......
T Consensus       233 PP~~~~~-----~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          233 PPKFGRG-----THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             CCSEEEC-----TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             CccccCC-----chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence            3311100     0000001345678999999999999999776654433

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.52  E-value=6.2e-14  Score=117.23  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=82.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHH-------HHHHhhcC--CCceEEEEcccCCCC--C--CCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKM-------QERLLLKG--YKEVKVLEADMLDLP--F--SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~-------~~~~~~~~--~~~i~~~~~d~~~~~--~--~~~   66 (201)
                      +.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|       ++++...+  ..++.++++|....+  +  ..+
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~  322 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP  322 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccC
Confidence            468999999999999999986 444899999999999888       88887777  568999988654321  1  246


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +||+|+++..+. .               ++..++++++.+.|+|||++++..
T Consensus       323 ~FDvIvvn~~l~-~---------------~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          323 QCDVILVNNFLF-D---------------EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             GCSEEEECCTTC-C---------------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CCCEEEEeCccc-c---------------ccHHHHHHHHHHhCCCCeEEEEee
Confidence            899999865541 1               566788999999999999999864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.52  E-value=1.3e-14  Score=106.92  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+  +|+++|+++.+++.         .++++++++|+.. +++.++||+|+++..++..
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~   91 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD   91 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT
T ss_pred             CCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccC
Confidence            4689999999999999999887  99999999999987         2478999999987 5556899999998766532


Q ss_pred             eecCCCC--CCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDP--WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                          .++  |.    ...+...+++++.+.+ |||.+++....
T Consensus        92 ----~~~~~~~----~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           92 ----TDDPIIG----GGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             ----CCCTTTB----CCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             ----Ccccccc----CCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence                010  10    1122345777788888 99999987654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.52  E-value=1.8e-13  Score=112.03  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|+|+|||+|.++..+++..+. +++..|. +.+++.++++....+.++++++.+|++..+.+  .+|++++..++|.+
T Consensus       181 ~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~  257 (353)
T 4a6d_A          181 PLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHDW  257 (353)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGGS
T ss_pred             CeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecccC
Confidence            58999999999999999999776 8888887 88999999887666667899999999875543  57999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   +.++..++|+++++.|+|||++++.+..
T Consensus       258 -------------~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          258 -------------ADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             -------------CHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             -------------CHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence                         4577889999999999999999998764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.51  E-value=1.2e-14  Score=111.93  Aligned_cols=108  Identities=20%  Similarity=0.210  Sum_probs=75.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECC-HHHHHHH---HHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLS-AVAVEKM---QERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~-~~~~~~~---~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++..+. +|+|+|+| +.+++.|   +++....+.+++.++++|+..++.. .+.+|.+.++
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~  104 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL  104 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence            458999999999999999866444 89999999 6666665   7777666777899999999887421 1334444432


Q ss_pred             cccceeeecCCCCCCCCCcc-HHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPET-VTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .           ||.....+ ..+...+++++.++|||||++++..
T Consensus       105 ~-----------~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          105 F-----------PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             S-----------CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-----------CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            2           12100000 0112568999999999999998843

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.51  E-value=2.6e-15  Score=125.38  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce--EEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV--KVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i--~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++    +.+..  .+...++..+++++++||+|++..+++
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~  182 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANTLC  182 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGG
T ss_pred             CCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECChHH
Confidence            46899999999999999999877 999999999999998865    22111  122334444455568999999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++               .+...+++++.++|+|||.+++....
T Consensus       183 h~---------------~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          183 HI---------------PYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             GC---------------TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hc---------------CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            77               57889999999999999999987643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.51  E-value=3.7e-14  Score=108.57  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-CC----CCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-FS----NDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~~----~~~~D~v   71 (201)
                      +.+|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+.. ++.++++|+... + ..    .++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            46899999999999999998732  39999999999999999999887754 599999998653 1 11    1689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++...                  ......+++++.++|+|||.+++...
T Consensus       145 ~~~~~------------------~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          145 YIDAD------------------KANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             EECSC------------------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EECCC------------------HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            96432                  24567899999999999999987544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.51  E-value=5.5e-14  Score=116.46  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCC-C-C--CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL-P-F--SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~-~-~--~~~~~D~v~~~   74 (201)
                      +++|||+|||+|.++..++..+..+|+++|+++.+++.+++++..+++.  ++.++++|+.+. + .  ...+||+|++.
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D  292 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID  292 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence            5789999999999999999877669999999999999999999988876  899999998762 2 1  23589999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ......   + .  .........+.+++..+.+.|+|||.+++.+....
T Consensus       293 PP~~~~---~-~--~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          293 PPSFAR---N-K--KEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             CCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCCCC---C-h--hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            322100   0 0  00112345677889999999999999998776543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.51  E-value=4.8e-14  Score=111.64  Aligned_cols=122  Identities=12%  Similarity=0.117  Sum_probs=87.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC----CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF----SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~   74 (201)
                      |.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...+.+++.++++|+..++.    ..++||+|++.
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d  163 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD  163 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence            468999999999999999875  324999999999999999999998887789999999877543    25689999975


Q ss_pred             ccccee-eecCCCCCCC--CCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 ATMEVL-FVNSGDPWNP--QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~~l~~~-~~~~~~~~~~--~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ...... .....+.|.+  -........++++++.++|||||++++.+++.
T Consensus       164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            322110 0000000100  00001235789999999999999999877653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.51  E-value=4.5e-14  Score=108.85  Aligned_cols=101  Identities=19%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-CCC--CCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFS--NDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~~~--~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...+. +++.++.+|+... +..  .++||+|++..
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            46899999999999999998753 3999999999999999999987775 4699999998763 321  46899999855


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..                  .....+++.+.++|+|||.+++.+
T Consensus       135 ~~------------------~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          135 AK------------------GQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             GG------------------SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CH------------------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            43                  345789999999999999998864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.51  E-value=9.1e-14  Score=106.53  Aligned_cols=100  Identities=19%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCCCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~v~~   73 (201)
                      +.+|||+|||+|..+..+++. ++. +|+++|+++.+++.+++++...+     .+++.++++|+.......++||+|++
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~  157 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV  157 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence            468999999999999999887 443 99999999999999999887643     35799999998865444578999998


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...++.+                     ++++.++|+|||++++....
T Consensus       158 ~~~~~~~---------------------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          158 GAAAPVV---------------------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CSBBSSC---------------------CHHHHHTEEEEEEEEEEESC
T ss_pred             CCchHHH---------------------HHHHHHhcCCCcEEEEEEec
Confidence            7766433                     35788999999999987654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.51  E-value=2.6e-13  Score=111.96  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++..+.. +|+|+|+++.+++.+++++...++ +++++.++|+.+++.+.++||+|+++..++
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg  297 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYG  297 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC
T ss_pred             CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCC
Confidence            468999999999999999998764 899999999999999999988876 579999999999887778999999975544


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ....+       ...-.....++++.+.++|  +|.+++++.+.
T Consensus       298 ~r~~~-------~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~  332 (373)
T 3tm4_A          298 LKIGK-------KSMIPDLYMKFFNELAKVL--EKRGVFITTEK  332 (373)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred             cccCc-------chhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence            32110       0011122478889999988  56666665543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.51  E-value=5.7e-14  Score=115.66  Aligned_cols=99  Identities=17%  Similarity=0.279  Sum_probs=83.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..+++..+. +++++|+ +.+++.+++      .++++++.+|+.+ +++.+  |+|++..++|++
T Consensus       205 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~  274 (368)
T 3reo_A          205 TTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GVPKG--DAIFIKWICHDW  274 (368)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGB
T ss_pred             CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CCCCC--CEEEEechhhcC
Confidence            68999999999999999988665 8999999 888776643      2589999999987 66544  999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   +.++..+++++++++|+|||++++.+...+
T Consensus       275 -------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          275 -------------SDEHCLKLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             -------------CHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence                         456778999999999999999999876543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.51  E-value=4.9e-14  Score=115.13  Aligned_cols=103  Identities=20%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+|||+|||+|.++..+++..+. +++++|+ +.++.  +++....+ .++++++.+|+. .+.+  +||+|++..++|+
T Consensus       186 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~  259 (348)
T 3lst_A          186 GTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILHN  259 (348)
T ss_dssp             EEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGGG
T ss_pred             ceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhccC
Confidence            58999999999999999988666 8999999 44444  22222222 247999999997 3444  8999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +             ..++..+++++++++|||||++++.+...+
T Consensus       260 ~-------------~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~  290 (348)
T 3lst_A          260 W-------------GDEDSVRILTNCRRVMPAHGRVLVIDAVVP  290 (348)
T ss_dssp             S-------------CHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            6             345668999999999999999999876433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.50  E-value=9.2e-14  Score=109.24  Aligned_cols=97  Identities=29%  Similarity=0.457  Sum_probs=81.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++.     +++.+..+|+..+++++++||+|++..+.  
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~--  158 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP--  158 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence            4689999999999999999873 239999999999999998764     36799999998888778899999975331  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                          .+++++.++|+|||.+++.++...+
T Consensus       159 --------------------~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          159 --------------------CKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             --------------------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             --------------------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence                                2578899999999999998876544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=106.86  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=80.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC---CCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD---LPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++. ++ .+|+++|+++.+++.+.++....  +++.++++|+.+   ++...++||+|++..
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence            468999999999999999987 33 39999999999888887776654  589999999987   334467899999743


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                 .......++.++.++|+|||.+++...
T Consensus       156 ~-----------------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          156 A-----------------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             C-----------------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-----------------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            2                 113445678899999999999998543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.50  E-value=4.9e-14  Score=111.41  Aligned_cols=102  Identities=19%  Similarity=0.251  Sum_probs=84.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhc-C--CCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLK-G--YKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~-~--~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.+++++... +  .+++.++.+|+...+++.++||+|++..
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~  179 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM  179 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence            468999999999999999985 43 39999999999999999998766 4  5689999999988777678899999721


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                          .+..++++++.++|+|||.+++.+...
T Consensus       180 --------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          180 --------------------LAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             --------------------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             --------------------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence                                112368999999999999999877653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.50  E-value=2.4e-13  Score=112.11  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCC-CCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v~~~~~l   77 (201)
                      |++|||+| |+|.++..++..++ .+|+++|+++.+++.+++++...+..+++++++|+.. ++. ..++||+|+++..+
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~  251 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE  251 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence            46899999 99999999998876 4999999999999999999988776689999999988 553 34689999986544


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE-EEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF-ISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l-~~~~  119 (201)
                      +.                .....+++++.++|+|||++ ++..
T Consensus       252 ~~----------------~~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          252 TL----------------EAIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             SH----------------HHHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ch----------------HHHHHHHHHHHHHcccCCeEEEEEE
Confidence            22                23588999999999999954 4443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.49  E-value=7.4e-14  Score=106.00  Aligned_cols=100  Identities=23%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+. ++++++++|+... +...+ ||+|++...
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            46899999999999999998743  3999999999999999999877664 3699999998753 43345 999997522


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                        ......+++++.++|+|||.+++..
T Consensus       136 ------------------~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          136 ------------------VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ------------------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             ------------------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence                              1345789999999999999988743

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.49  E-value=7.3e-14  Score=114.86  Aligned_cols=99  Identities=15%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..+++..+. +++++|+ +.+++.+++      .++++++.+|+.+ +++.+  |+|++..++|++
T Consensus       203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~  272 (364)
T 3p9c_A          203 GTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVPSG--DTILMKWILHDW  272 (364)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGS
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCCCC--CEEEehHHhccC
Confidence            68999999999999999988665 8999999 887766643      2589999999987 66644  999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                   ..++..++++++++.|+|||++++.+...+
T Consensus       273 -------------~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          273 -------------SDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             -------------CHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence                         456788999999999999999999876543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.48  E-value=7.8e-14  Score=110.37  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+|.++..+++. ++. +|+++|+++.+++.+++++...+. +++.++.+|+.+. ++.++||+|+++.  
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~--  189 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV--  189 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC--
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC--
Confidence            468999999999999999987 543 999999999999999999887775 5799999998875 5567899999731  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                        .+...+++++.++|+|||.+++.+..
T Consensus       190 ------------------~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          190 ------------------PDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             ------------------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ------------------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence                              12246889999999999999988764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.48  E-value=1.5e-13  Score=114.17  Aligned_cols=111  Identities=18%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCC----CCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPF----SNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~~D~v~~~~   75 (201)
                      +++|||+|||+|.++..++..+..+|+++|+++.+++.+++++..+++. ++.++++|+.+...    ...+||+|++..
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp  297 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  297 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence            4689999999999999999886669999999999999999999988876 89999999876421    246899999742


Q ss_pred             ccceeeecCCCCCCCCC-----ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQP-----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .           .....     ........++.++.++|+|||.+++.+++.
T Consensus       298 P-----------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          298 P-----------AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             C-----------CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             C-----------CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            2           11100     112457789999999999999998887764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.48  E-value=1.8e-13  Score=106.07  Aligned_cols=101  Identities=20%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+. +++.+..+|+.+...+.++||+|++..    
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~----  166 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEVA-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV----  166 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS----
T ss_pred             CCEEEEeCCCccHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC----
Confidence            4689999999999999999883 4999999999999999999887765 679999999887433567899999631    


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                      .+...+++++.++|+|||++++.....
T Consensus       167 ----------------~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          167 ----------------REPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             ----------------SCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             ----------------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                            122467899999999999999887643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.48  E-value=1.5e-14  Score=112.60  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CC-----CCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FS-----NDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~-----~~~~D~v   71 (201)
                      +++|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+. ++++++++|+.... ..     .++||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            46899999999999999998632  3999999999999999999988775 47999999987532 11     4789999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++...                  ......+++++.++|+|||.+++...
T Consensus       141 ~~d~~------------------~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          141 FIDAD------------------KTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEESC------------------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EEcCC------------------hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence            97432                  24567899999999999999997543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.47  E-value=3.6e-13  Score=103.34  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=78.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~   75 (201)
                      +.+|||+|||+|.++..+++. ++ .+|+++|+++.+++.++++....  +++.++++|+....   ...++||+|++..
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEECC
Confidence            468999999999999999977 43 39999999999999999887654  58999999998632   1235899999643


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      .                 .......+++++.++|+|||.+++.
T Consensus       152 ~-----------------~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          152 A-----------------QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             C-----------------STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-----------------CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            2                 1123345699999999999998886

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.47  E-value=1.5e-13  Score=121.69  Aligned_cols=117  Identities=19%  Similarity=0.217  Sum_probs=89.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCC-CCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLD-LPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~-~~~~~~~~D~v~~~~~l   77 (201)
                      |++|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++.  +++++++|+.+ ++...++||+|++....
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~  619 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT  619 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred             CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence            5789999999999999999887768999999999999999999988865  79999999987 33335789999974321


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..-   +.. -...........+++..+.++|+|||.+++.+..
T Consensus       620 f~~---~~~-~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          620 FSN---SKR-MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             BC-----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccC---Ccc-chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            000   000 0000134467889999999999999999976654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.47  E-value=8.4e-14  Score=114.72  Aligned_cols=98  Identities=22%  Similarity=0.321  Sum_probs=82.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++      .++++++.+|+.+ +++.  ||+|++..++|+
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~  279 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ--GDAMILKAVCHN  279 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC--EEEEEEESSGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC--CCEEEEeccccc
Confidence            368999999999999999998765 8999999 888876653      2479999999987 5553  999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +             ..+...+++++++++|+|||++++.+..
T Consensus       280 ~-------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          280 W-------------SDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             C-------------CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            6             3345669999999999999999988654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.46  E-value=4.1e-14  Score=103.58  Aligned_cols=103  Identities=24%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      +.+|||+|||+|.++..+++. ++ .+++++|+++ +++.          +++.++++|+.+.+        ++.++||+
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~   91 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence            468999999999999999887 44 3999999998 6432          47899999998765        56679999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHH------HHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTK------VMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      |+++..++..    +.      ...+.      ..++++++.++|+|||.+++..+..+.
T Consensus        92 i~~~~~~~~~----~~------~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           92 VMSDMAPNMS----GT------PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             EEECCCCCCC----SC------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             EEECCCcccc----CC------CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence            9998776543    00      01111      268999999999999999987765543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.46  E-value=1.5e-13  Score=110.37  Aligned_cols=108  Identities=22%  Similarity=0.300  Sum_probs=81.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhh----cCCCceEEEEcccCCCCC--CCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLDLPF--SNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~--~~~~~D~v~~   73 (201)
                      +++|||+|||+|.++..+++... .+|+++|+++.+++.+++++..    ...++++++.+|+.....  +.++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~  175 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence            46899999999999999998743 3999999999999999998742    123579999999876432  4678999998


Q ss_pred             ccccceeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ....+..             ....+  .++++++.++|+|||.+++...+
T Consensus       176 d~~~~~~-------------~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          176 DTTDPAG-------------PASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             ECC----------------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCCccc-------------cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            5433211             01112  68999999999999999987543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.46  E-value=2.1e-13  Score=110.84  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcC-----------CCceEEEEcccCCC--CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKG-----------YKEVKVLEADMLDL--PFSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~--~~~~   65 (201)
                      |.+|||+|||+|.++..++.. ++ .+|+++|+++.+++.+++++...+           ..++.++.+|+.+.  +++.
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~  185 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS  185 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence            578999999999999999987 55 399999999999999999987521           25799999999875  4556


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ++||+|++...         .||           .+++++.++|+|||.+++.....
T Consensus       186 ~~fD~V~~~~~---------~~~-----------~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          186 LTFDAVALDML---------NPH-----------VTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             --EEEEEECSS---------STT-----------TTHHHHGGGEEEEEEEEEEESSH
T ss_pred             CCeeEEEECCC---------CHH-----------HHHHHHHHhcCCCcEEEEEeCCH
Confidence            78999997421         222           37899999999999999876543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.46  E-value=1.7e-13  Score=113.86  Aligned_cols=116  Identities=14%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-C-ceEEEEcccCCCCC----CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-K-EVKVLEADMLDLPF----SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~-~i~~~~~d~~~~~~----~~~~~D~v~~~   74 (201)
                      +++|||+|||+|.++..++..+..+|+++|+++.+++.+++++..+++ + ++.++++|+.+...    ...+||+|++.
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d  300 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD  300 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence            578999999999999999998766999999999999999999998887 5 89999999876421    14689999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ......   +..   .-.........++.++.+.|+|||.+++.+...
T Consensus       301 pP~~~~---~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          301 PPKFVE---NKS---QLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             CSSTTT---CSS---SSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCCC---Chh---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            221000   000   000122567889999999999999999877654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.46  E-value=7.8e-14  Score=106.04  Aligned_cols=87  Identities=29%  Similarity=0.576  Sum_probs=73.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++    .+++++|+++.               ++.++++|+.+++++.++||+|++..++|+ 
T Consensus        68 ~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-  127 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-  127 (215)
T ss_dssp             TSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-
T ss_pred             CCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhccc-
Confidence            3689999999999988773    38999999886               457789999888887889999999887752 


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     .+...+++++.++|+|||.+++.++..
T Consensus       128 ---------------~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          128 ---------------TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             ---------------cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence                           356789999999999999999887654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.46  E-value=6.3e-13  Score=102.64  Aligned_cols=100  Identities=16%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~   75 (201)
                      |.+|||+|||+|.++..++.. +.. +|+++|+++.+++.+.+.....  .++.++.+|+....   ...++||+|++..
T Consensus        77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C           77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEEecC
Confidence            578999999999999999876 433 9999999999876665544433  48999999987632   1246899999764


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..                 ......+...+.+.|||||++++..
T Consensus       155 a~-----------------~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          155 AQ-----------------PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             CC-----------------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-----------------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            32                 1223344556667999999998763

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.46  E-value=1.4e-13  Score=106.52  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=82.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C--------------
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P--------------   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~--------------   62 (201)
                      +.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++...+.. ++.++.+|+... +              
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            46899999999999999998742  39999999999999999998877754 499999997642 1              


Q ss_pred             CCC--CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           63 FSN--DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        63 ~~~--~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ++.  ++||+|++....                  .....+++++.++|+|||.+++..
T Consensus       141 f~~~~~~fD~I~~~~~~------------------~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADK------------------ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCG------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCH------------------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            222  789999975332                  455788999999999999999865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.45  E-value=2.6e-13  Score=102.01  Aligned_cols=108  Identities=10%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC---CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------------
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI---TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------------   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~---~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------------   62 (201)
                      +.+|||+|||+|.++..+++..+   .+|+++|+++..           ..+++.++++|+.+.+               
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~   91 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN   91 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence            35899999999999999998743   399999999831           1357899999998765               


Q ss_pred             ----------CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           63 ----------FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        63 ----------~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                ++.++||+|+++..++..-    .+..+.........++++++.++|+|||.+++..+..+
T Consensus        92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g----~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (201)
T 2plw_A           92 NSVDYKLKEILQDKKIDIILSDAAVPCIG----NKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS  158 (201)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCCCCCS----CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             hhhHHHHHhhcCCCcccEEEeCCCcCCCC----CcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence                      4567899999977665420    00000000001123588999999999999998766543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.45  E-value=1.5e-13  Score=107.29  Aligned_cols=101  Identities=12%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-C-----CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-F-----SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-~-----~~~~~D~   70 (201)
                      +++|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+. ++++++.+|+... + +     ..++||+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            46899999999999999988732  3999999999999999999987775 4799999998653 2 1     1478999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |++...                  ......+++++.++|+|||.+++..
T Consensus       160 V~~d~~------------------~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          160 IFVDAD------------------KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEECSC------------------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEcCc------------------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            997432                  1356789999999999999998753

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.45  E-value=2e-13  Score=111.68  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=81.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++      .++++++.+|+.. +++  .||+|++..++|+
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~  258 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SIP--NADAVLLKYILHN  258 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CCC--CccEEEeehhhcc
Confidence            368999999999999999987554 8999999 988877654      2469999999976 554  3999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccC---CcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP---DGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  121 (201)
                      +             ......+++++++++|+|   ||++++.+..
T Consensus       259 ~-------------~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          259 W-------------TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             S-------------CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             C-------------CHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            6             334566999999999999   9999988754

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.45  E-value=1.4e-13  Score=105.74  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=80.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC------CeEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCCCCC-Cc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI------TAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSN-DC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~------~~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~   67 (201)
                      +.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.+++++...+     .+++.++.+|+.. +++. ++
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  163 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP  163 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence            468999999999999999885 32      389999999999999999887654     4589999999887 3333 68


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ||+|++...++++                     .+++.+.|+|||++++....
T Consensus       164 fD~I~~~~~~~~~---------------------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          164 YNAIHVGAAAPDT---------------------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EEEEEECSCBSSC---------------------CHHHHHTEEEEEEEEEEESC
T ss_pred             ccEEEECCchHHH---------------------HHHHHHHhcCCCEEEEEEec
Confidence            9999988777544                     25788999999999987643

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.45  E-value=3.3e-13  Score=113.94  Aligned_cols=122  Identities=19%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~   76 (201)
                      |.+|||+|||+|..+..++....  .+|+++|+++.+++.+++++...+.+++.++++|+...+  ++.++||+|++...
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P  339 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP  339 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence            46899999999999999988632  399999999999999999999888878999999998765  44478999996321


Q ss_pred             ---cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 ---MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 ---l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                         ...+-.+.+..|...+.....    ..++++++.++|||||++++.+++.
T Consensus       340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence               111100111112111222211    2678999999999999999887764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.45  E-value=9.4e-13  Score=99.45  Aligned_cols=97  Identities=22%  Similarity=0.256  Sum_probs=77.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+. ++.++++|+.+++   .+||+|+++..++..
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence            468999999999999999988766899999999999999999887776 8999999998863   489999987665433


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                   .......+++++.+++  |+.++
T Consensus       126 -------------~~~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          126 -------------RKHADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             -------------STTTTHHHHHHHHHHC--SEEEE
T ss_pred             -------------cCCchHHHHHHHHHhc--CcEEE
Confidence                         1122356788888888  45443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.44  E-value=2.1e-13  Score=109.66  Aligned_cols=109  Identities=20%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~   78 (201)
                      .+|||||||+|.++..+++..+. +++++|+++.+++.+++++....-++++++.+|+...  ..+.++||+|++....+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            38999999999999999985333 9999999999999999988654446899999998764  34467899999753322


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                               +.. +.+ -....+++.++++|+|||.+++....
T Consensus       171 ---------~~~-~~~-L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          171 ---------AIT-PQN-FTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             ---------SCC-CGG-GSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---------ccc-chh-hhHHHHHHHHHHhcCCCcEEEEEecC
Confidence                     110 001 11268999999999999999887654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.44  E-value=6.9e-13  Score=99.80  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=70.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..+..+|+++|+++.+++.++++..     +++++++|+..++   ++||+|+++..+|+.
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  123 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYDTWIMNPPFGSV  123 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEEEEEECCCC---
T ss_pred             CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCeeEEEECCCchhc
Confidence            46899999999999999998865589999999999999998864     6899999998864   689999998877765


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcc
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVL  109 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  109 (201)
                                   ......++++++.+.+
T Consensus       124 -------------~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          124 -------------VKHSDRAFIDKAFETS  139 (200)
T ss_dssp             -----------------CHHHHHHHHHHE
T ss_pred             -------------cCchhHHHHHHHHHhc
Confidence                         1122357888888888

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.44  E-value=6.4e-14  Score=111.45  Aligned_cols=95  Identities=9%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEE-EcccCCCC---CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL-EADMLDLP---FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~---~~~~~~D~v~~~~~   76 (201)
                      |.+|||+|||||.++..+++.+..+|+++|+++.|++.+.++-     +++... ..|+..+.   ++..+||+|++..+
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s  160 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS  160 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred             ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEEEee
Confidence            4689999999999999999987779999999999998754321     233222 23443332   34446999998776


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ++.+                  ..++.++.++|+|||.+++.
T Consensus       161 f~sl------------------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          161 FISL------------------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SSCG------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred             HhhH------------------HHHHHHHHHHcCcCCEEEEE
Confidence            6533                  67999999999999999887

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.43  E-value=3.2e-13  Score=106.30  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=82.8

Q ss_pred             CcEEEecCCC--ChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CC--CCcee--
Q 028957            2 TSVLELGCGN--SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FS--NDCFD--   69 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~--~~~~D--   69 (201)
                      .+|||||||+  +..+..+++. .+. +|+++|.|+.|+..+++++......++.++++|+.+..    .+  ...||  
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~  159 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT  159 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence            4799999997  4445555543 333 99999999999999999887644347999999998742    01  23454  


Q ss_pred             ---EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           70 ---VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        70 ---~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                         .|+++.+||++            ...++...+++++.+.|+|||+|++......
T Consensus       160 ~p~av~~~avLH~l------------~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          160 RPVALTVIAIVHFV------------LDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             SCCEEEEESCGGGS------------CGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CcchHHhhhhHhcC------------CchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence               68889999988            1223367899999999999999998876653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.43  E-value=2.6e-13  Score=109.46  Aligned_cols=110  Identities=19%  Similarity=0.250  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhh--cC---CCceEEEEcccCC-CCCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLL--KG---YKEVKVLEADMLD-LPFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~--~~---~~~i~~~~~d~~~-~~~~~~~~D~v~~   73 (201)
                      +++|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..  .+   .++++++.+|+.. ++...++||+|++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            4689999999999999999874 33999999999999999998754  11   3589999999876 3334578999998


Q ss_pred             ccccceeeecCCCCC-CCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPW-NPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ....         |+ ...+.......++++++.++|+|||.+++..
T Consensus       158 d~~~---------~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          158 DLTD---------PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             ECCC---------CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCC---------cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            5432         22 0000011114789999999999999998764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.43  E-value=9e-14  Score=108.51  Aligned_cols=78  Identities=10%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC---CCC---CCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL---PFS---NDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~---~~~---~~~~D~v~   72 (201)
                      +.+|||+|||+|.++..++...+ .+|+++|+++.+++.+++++...+.. +++++++|+.+.   +++   +++||+|+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~  145 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  145 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence            35899999999999998887632 39999999999999999999887754 499999997652   333   25899999


Q ss_pred             eccccc
Q 028957           73 EKATME   78 (201)
Q Consensus        73 ~~~~l~   78 (201)
                      ++..++
T Consensus       146 ~npp~~  151 (254)
T 2h00_A          146 CNPPFF  151 (254)
T ss_dssp             ECCCCC
T ss_pred             ECCCCc
Confidence            976554

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.43  E-value=7.3e-13  Score=102.25  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=82.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC----CCCC--CceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL----PFSN--DCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~----~~~~--~~~D~v   71 (201)
                      +++|||+|||+|..+..++...+  .+|+++|+++.+++.+++++...+. +++.++.+|+...    +...  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            46899999999999999998743  2999999999999999999887765 4699999997542    2222  689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++...                  ......+++++.++|+|||.+++...
T Consensus       153 ~~d~~------------------~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          153 FIDAD------------------KRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EECSC------------------GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             EECCC------------------HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            97432                  24567899999999999999997543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=4.8e-13  Score=110.94  Aligned_cols=110  Identities=16%  Similarity=0.165  Sum_probs=84.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..++..+. .|+++|+|+.+++.+++++..++.. ..+.++|+.+.. ...+.||+|+++.    
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dp----  288 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDP----  288 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECC----
T ss_pred             CCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECC----
Confidence            57899999999999999999887 5999999999999999999888764 467799987632 1123499999742    


Q ss_pred             eeecCCCCCCC-CCc----cHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNP-QPE----TVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                             |... ...    ......++++.+.++|+|||.+++.+++..
T Consensus       289 -------P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          289 -------PTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             -------CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             -------CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence                   2211 111    123457889999999999999997776654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.43  E-value=2.7e-13  Score=103.99  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC--CCC----CCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL--PFS----NDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~--~~~----~~~~D~v   71 (201)
                      +++|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++...+. ++++++.+|+...  .+.    .++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            46899999999999999998732  3999999999999999999887765 5799999998653  111    1689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ++...                  ......+++++.++|+|||.+++..
T Consensus       150 ~~d~~------------------~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          150 VVDAD------------------KENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EECSC------------------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCC------------------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            97432                  1455789999999999999998754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.43  E-value=4.9e-13  Score=113.49  Aligned_cols=121  Identities=16%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccc-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKAT-   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~-   76 (201)
                      |.+|||+|||+|..+..++....  ..|+++|+++.+++.+++++...++.++.++++|+..++. ..++||+|++... 
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc  197 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC  197 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence            46899999999999999998632  3999999999999999999998888789999999987542 3578999997321 


Q ss_pred             --cceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 --MEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 --l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                        ...+-.+.+..|.-.++..    ....++++++.++|||||++++.+++
T Consensus       198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence              1111011111111111111    12457899999999999999988765

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.43  E-value=8.3e-14  Score=104.63  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC--------C---CCcee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF--------S---NDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~---~~~~D   69 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.           ...+++.++++|+.+.+.        .   .++||
T Consensus        26 g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D   93 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVD   93 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred             CCEEEEEeecCCHHHHHHHHcCC-cEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence            47899999999999999998844 9999999874           123589999999987541        1   14899


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +|+++......    +.+..+..........+++.+.++|+|||.+++..+..+.
T Consensus        94 ~Vlsd~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           94 DVVSDAMAKVS----GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             EEEECCCCCCC----SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             EEecCCCcCCC----CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence            99986533211    0000000011223467889999999999999988876554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.42  E-value=1.7e-13  Score=113.43  Aligned_cols=111  Identities=21%  Similarity=0.263  Sum_probs=87.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC----CCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF----SNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~   76 (201)
                      +++|||+|||+|.++..++.. ..+|+++|+++.+++.+++++..++..++.++++|+.+...    ...+||+|++...
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            358999999999999999988 44999999999999999999998887779999999876421    1468999997322


Q ss_pred             cceeeecCCCCCCCCC----ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 MEVLFVNSGDPWNPQP----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .          |....    ........++..+.++|+|||.+++.+++.
T Consensus       289 ~----------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          289 A----------FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             C----------SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             C----------CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            1          00101    112456789999999999999999887654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.42  E-value=3.7e-13  Score=109.38  Aligned_cols=107  Identities=19%  Similarity=0.309  Sum_probs=81.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc--C--CCceEEEEcccCCC--CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLDL--PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~~--~~~~~~~D~v~~   73 (201)
                      +++|||+|||+|.++..+++... .+|+++|+++.+++.+++++...  +  -++++++.+|+...  ..+.++||+|++
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~  200 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  200 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence            46899999999999999998743 39999999999999999987642  1  25899999998763  234578999997


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ...         +|+..  ........+++++.++|+|||.+++.
T Consensus       201 d~~---------~p~~~--~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          201 DSS---------DPIGP--AKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             CCC---------CTTSG--GGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC---------CccCc--chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            432         22211  01111478999999999999999975

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.42  E-value=6.2e-13  Score=105.24  Aligned_cols=100  Identities=13%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|||+|||+|.++..++..+..+|+++|+++.+++.+++|++.+++ +++.++++|+.++.. .+.||.|+++...  
T Consensus       126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p~--  202 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV--  202 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS--
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCCC--
Confidence            578999999999999999998766999999999999999999999885 458999999988653 4789999864221  


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                       ....++..+.+.|++||.+.+.++
T Consensus       203 -----------------~~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          203 -----------------RTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             -----------------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------cHHHHHHHHHHHcCCCCEEEEEee
Confidence                             123567777889999999876554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.42  E-value=3.6e-13  Score=107.14  Aligned_cols=107  Identities=20%  Similarity=0.285  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +++|||+|||+|..+..+++..+ .+++++|+++.+++.+++++...+    .++++++.+|+... +...++||+|++.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  158 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  158 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence            46899999999999999998753 399999999999999999876432    35899999998763 2225789999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..         +|+.    .....  ..+++.+.+.|+|||.+++...
T Consensus       159 ~~---------~~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          159 SS---------DPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             CC---------CTTT----GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CC---------CCCC----cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            32         2221    11222  6899999999999999997754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.42  E-value=5.3e-13  Score=106.78  Aligned_cols=111  Identities=18%  Similarity=0.212  Sum_probs=81.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhh----cCCCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~----~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..    ...++++++.+|+.. ++...++||+|++.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            4689999999999999999873 34999999999999999998753    113589999999875 33335789999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         +||.... ......++++++.+.|+|||.+++...+
T Consensus       171 ~~---------~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          171 ST---------DPTAGQG-GHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             C--------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CC---------CcccCch-hhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            32         1221100 0012368999999999999999987543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.42  E-value=3.1e-13  Score=107.37  Aligned_cols=104  Identities=17%  Similarity=0.307  Sum_probs=79.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-----------CCCceEEEEcccCCC-CCCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-----------GYKEVKVLEADMLDL-PFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~-~~~~~~~   68 (201)
                      +++|||+|||+|.++..+++.+..+|+++|+++.+++.+++++ ..           ..++++++.+|+... .. .++|
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f  153 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF  153 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence            4689999999999999999884449999999999999999987 32           235799999998652 22 5789


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |+|++...         +|+.+    ...  ...+++++.++|+|||.+++..
T Consensus       154 D~Ii~d~~---------~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          154 DVIIADST---------DPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEECC---------CCC---------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC---------CCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99997432         22211    112  3688999999999999998764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.42  E-value=6.7e-13  Score=102.83  Aligned_cols=101  Identities=17%  Similarity=0.127  Sum_probs=82.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C-----CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-----SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~-----~~~~~D~   70 (201)
                      +++|||+|||+|..+..+++..+  .+++++|+++.+++.+++++...+.. +++++.+|+... + +     +.++||+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            46899999999999999998732  39999999999999999999877754 699999998753 2 1     2478999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |++...                  ......+++.+.++|+|||.+++..
T Consensus       151 I~~d~~------------------~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          151 GFVDAD------------------KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEECSC------------------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCc------------------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            996421                  2456789999999999999988754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.41  E-value=5.7e-13  Score=108.41  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|||+|||+|.++.. +. +..+|+++|+++.+++.+++++..++. +++.++++|+.+..   ++||+|+++..   
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP---  267 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP---  267 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT---
T ss_pred             CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc---
Confidence            46899999999999999 77 445999999999999999999998886 57999999998764   78999997321   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                      .....+++.+.++|+|||.+++.++...
T Consensus       268 ----------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          268 ----------------KFAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             ----------------TTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             ----------------HhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence                            1123788899999999999998776653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.41  E-value=4.5e-13  Score=106.12  Aligned_cols=109  Identities=21%  Similarity=0.319  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhh----cCCCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLL----KGYKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~----~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +++|||+|||+|.++..+++. +..+|+++|+++.+++.+++++..    ...++++++.+|+.. ++...++||+|++.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            468999999999999999987 445999999999999999998753    123589999999875 33335789999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...         |+.+.. + -....+++++.+.|+|||.+++...
T Consensus       156 ~~~---------~~~~~~-~-l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          156 STE---------PVGPAV-N-LFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             CSS---------CCSCCC-C-CSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCC---------CCCcch-h-hhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            322         221110 0 1125789999999999999988753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.41  E-value=4.3e-13  Score=107.72  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc--C--CCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +++|||+|||+|..+..+++... .+|+++|+++.+++.+++++...  +  .++++++.+|+.. ++...++||+|++.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d  175 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence            46899999999999999998853 49999999999999999987641  1  3589999999875 33345789999975


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...         |+.+.  .......+++++.++|+|||.+++...
T Consensus       176 ~~~---------~~~~~--~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          176 SSD---------PMGPA--ESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             CC----------------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC---------CCCcc--hhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            332         22110  011235789999999999999987653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.40  E-value=3.9e-13  Score=113.36  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|..+..++....  ..|+++|+++.+++.+++++...++. +.++++|+..++ ...++||+|++....
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAPC  180 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCCc
Confidence            57899999999999999997632  38999999999999999999988877 999999987754 235789999963211


Q ss_pred             ---ceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 ---EVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                         ..+-.+.+..|...+....    ...++++++.++|||||++++.+++
T Consensus       181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence               1110111111111111221    2378999999999999999987765

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.40  E-value=2.4e-13  Score=105.38  Aligned_cols=96  Identities=15%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CC-CCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PF-SNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~-~~~~~D~v   71 (201)
                      +.+|||+|||+|..+..+++.    ++. +|+++|+++.+++.++.    . .++++++++|+...   +. ...+||+|
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~l~~~~~~~fD~I  156 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTTFEHLREMAHPLI  156 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHHHHhhccCCCCEE
Confidence            468999999999999999886    333 99999999999887761    1 25899999999874   43 23479999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhh-cccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~~~~  119 (201)
                      ++... |                 .+..+++.++.+ +|+|||++++.+
T Consensus       157 ~~d~~-~-----------------~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          157 FIDNA-H-----------------ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             EEESS-C-----------------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             EECCc-h-----------------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            97443 1                 245678999997 999999999864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.40  E-value=4.7e-12  Score=100.70  Aligned_cols=114  Identities=13%  Similarity=0.141  Sum_probs=81.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCce---eEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCF---DVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~---D~v~~~~   75 (201)
                      +.+|||+|||+|.++..++.. +. +|+++|+|+.+++.++++....+.. ++.++++|+... ++ ++|   |+|+++.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNP  200 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECC
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcC
Confidence            368999999999999999988 43 9999999999999999999888765 499999999873 22 578   9999863


Q ss_pred             ccceeeecCCCCCCCCCccH------HHHHHHHHHHh-hcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETV------TKVMAMLEGVH-RVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~~L~~gG~l~~~~  119 (201)
                      .+...-. ...|... -+..      .+...+++++. +.|+|||.+++..
T Consensus       201 Pyi~~~~-~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          201 PYVKSSA-HLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             CCBCGGG-SCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             CCCCccc-ccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            3211000 0000000 0000      01126899999 9999999998754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.39  E-value=7.6e-13  Score=108.42  Aligned_cols=97  Identities=15%  Similarity=0.245  Sum_probs=81.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..+++..+. +++++|+ +.+++.+++      .++++++.+|+.+ +++  .||+|++..++|++
T Consensus       195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~  264 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP--SADAVLLKWVLHDW  264 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC--CceEEEEcccccCC
Confidence            68999999999999999988665 8999999 777766543      2469999999987 554  49999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccC---CcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKP---DGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  121 (201)
                                   ..+...+++++++++|+|   ||++++.+..
T Consensus       265 -------------~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          265 -------------NDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             -------------CHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             -------------CHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence                         334566999999999999   9999987754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.39  E-value=6.9e-13  Score=107.27  Aligned_cols=108  Identities=20%  Similarity=0.318  Sum_probs=82.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhc--C--CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++...  +  .++++++.+|+... +...++||+|+++
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d  196 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  196 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence            4689999999999999999873 349999999999999999987652  1  25799999998752 2235789999974


Q ss_pred             cccceeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         +|+.    .....  .++++++.+.|+|||.+++...+
T Consensus       197 ~~---------~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          197 SS---------DPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             CC---------CSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             Cc---------CCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            31         2321    11122  78999999999999999986543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=1.2e-12  Score=104.27  Aligned_cols=75  Identities=20%  Similarity=0.351  Sum_probs=64.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++....+. ++++++++|+.+.+++  +||+|+++..++
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy~  104 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPYQ  104 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCGG
T ss_pred             CCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCcc
Confidence            46899999999999999999876 999999999999999998866543 5799999999887654  799999976654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.39  E-value=4.4e-13  Score=108.05  Aligned_cols=106  Identities=21%  Similarity=0.345  Sum_probs=78.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc--C--CCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK--G--YKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +++|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...  +  .++++++.+|+.. ++...++||+|++.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            46899999999999999998743 39999999999999999987643  1  3579999999875 23345789999975


Q ss_pred             cccceeeecCCCCCCCCCccHHH-H-HHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTK-V-MAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..         +|+.+    ... . ..+++++.++|+|||.+++..
T Consensus       189 ~~---------~~~~~----~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          189 SS---------DPVGP----AESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CC--------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CC---------CCCCc----chhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            42         12211    111 1 689999999999999999764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.38  E-value=9.7e-13  Score=110.40  Aligned_cols=121  Identities=13%  Similarity=0.205  Sum_probs=87.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++...+. ++.++++|+...+  ++.++||+|++....
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc  325 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILLDAPC  325 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence            46899999999999999998765 3999999999999999999988776 5789999998764  445789999963211


Q ss_pred             ---ceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 ---EVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                         ..+-.+++..|...+....    ...++++++.++|||||++++.+++.
T Consensus       326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence               1110000111111111111    13688999999999999999987654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.37  E-value=3.3e-13  Score=111.14  Aligned_cols=96  Identities=20%  Similarity=0.317  Sum_probs=75.4

Q ss_pred             CCcEEEecCC------CChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC------CC
Q 028957            1 MTSVLELGCG------NSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS------ND   66 (201)
Q Consensus         1 ~~~vLDlG~G------~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~   66 (201)
                      +.+|||||||      +|..+..+++. .+. +|+++|+++.+.       .  ..++++++++|+.++++.      .+
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~--~~~rI~fv~GDa~dlpf~~~l~~~d~  287 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V--DELRIRTIQGDQNDAEFLDRIARRYG  287 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G--CBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h--cCCCcEEEEecccccchhhhhhcccC
Confidence            4689999999      67777777654 233 999999999862       1  235899999999887655      58


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +||+|++... |+.               .+..+++++++++|||||.+++.+..
T Consensus       288 sFDlVisdgs-H~~---------------~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          288 PFDIVIDDGS-HIN---------------AHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CEEEEEECSC-CCH---------------HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CccEEEECCc-ccc---------------hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999998653 332               67789999999999999999987654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=97.78  Aligned_cols=108  Identities=16%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC---------CeEEEEECCHHHHHHHHHHHhhcCCCceEEE-EcccCCCC-------
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI---------TAITCIDLSAVAVEKMQERLLLKGYKEVKVL-EADMLDLP-------   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~---------~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~-------   62 (201)
                      +.+|||+|||+|.++..+++. +.         .+|+++|+++..           ..+++.++ .+|+....       
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~~   91 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRILE   91 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHHH
Confidence            468999999999999999987 42         489999999831           13467888 88876532       


Q ss_pred             -CCCCceeEEEeccccceeeecCCCCCC-CCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           63 -FSNDCFDVVIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        63 -~~~~~~D~v~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                       ++.++||+|++...++...     +|. +..........+++++.++|+|||++++..+....
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  150 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATG-----FRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ  150 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCS-----CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred             hcCCCCCcEEEeCCCCCCCC-----CcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence             2346899999976554321     000 00000011258899999999999999988776543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.35  E-value=1.8e-11  Score=94.24  Aligned_cols=133  Identities=17%  Similarity=0.182  Sum_probs=95.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|-++..++  +...|+++|+++.+++.+++++...+ .+..+...|....+.+ ++||+|++.-++|++
T Consensus       106 p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L  181 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA-EAGDLALIFKLLPLL  181 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred             CCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence            4689999999999999887  33499999999999999999988776 4788999998876654 589999998888877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe---cCCc------cccccccc-CCCCceEEEEEEeCCeeeE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS---FGQP------HFRRPFFN-APQFTWSVEWITFGDGFHY  150 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~---~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~  150 (201)
                                  ++ ......+ ++.+.|+++|.++-..   .+.+      .....+.. .....|......+++.+.|
T Consensus       182 ------------E~-q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl~~  247 (253)
T 3frh_A          182 ------------ER-EQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELIY  247 (253)
T ss_dssp             ------------HH-HSTTHHH-HHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEEEE
T ss_pred             ------------hh-hchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceEEE
Confidence                        22 2223444 8888999988766543   1111      11111111 2455677777778887666


Q ss_pred             E
Q 028957          151 F  151 (201)
Q Consensus       151 ~  151 (201)
                      .
T Consensus       248 ~  248 (253)
T 3frh_A          248 L  248 (253)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.35  E-value=7.7e-13  Score=111.41  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||+|..+..++.. +. ..|+++|+++.+++.+++++...++.++.++++|+..+. ...++||+|++....
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC  185 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence            578999999999999999876 22 389999999999999999999988888999999987653 234789999974321


Q ss_pred             ---ceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           78 ---EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                         ..+-.+.+..|...+...    ....++++++.++|||||++++.+++.
T Consensus       186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence               000000000000000011    123488999999999999999877653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.32  E-value=3.8e-12  Score=98.92  Aligned_cols=135  Identities=17%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||||||+|-++..++...+. .|+++|+++.+++.+++++...+. +..+...|....+ +.++||++++.-++|+
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~-p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDR-LDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence            468999999999999999887555 999999999999999999988886 4788888877644 4578999999988887


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec---CCc--c----ccccccc-CCCCceEEEEEEeCCeee
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF---GQP--H----FRRPFFN-APQFTWSVEWITFGDGFH  149 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~---~~~--~----~~~~~~~-~~~~~~~~~~~~~~~~~~  149 (201)
                      +             ..+.....+ ++.+.|+++|.++-..-   ..+  .    ....+.. .....|......+++.+.
T Consensus       211 L-------------e~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nEl~  276 (281)
T 3lcv_B          211 L-------------ETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELI  276 (281)
T ss_dssp             H-------------HHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTEEE
T ss_pred             h-------------hhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCeeE
Confidence            7             222233555 89999999998775432   111  1    1111111 122456667777777666


Q ss_pred             EE
Q 028957          150 YF  151 (201)
Q Consensus       150 ~~  151 (201)
                      |.
T Consensus       277 y~  278 (281)
T 3lcv_B          277 YV  278 (281)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.32  E-value=9.9e-12  Score=99.54  Aligned_cols=75  Identities=28%  Similarity=0.515  Sum_probs=60.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...+.++++++++|+..+++  .+||+|+++..++
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~py~  117 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTANIPYK  117 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEECCGG
T ss_pred             cCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEcCCcc
Confidence            46899999999999999998865 999999999999999999876666789999999988664  4799999875554

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.30  E-value=1.5e-12  Score=102.43  Aligned_cols=96  Identities=19%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +++|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++...    .-++++++.+|+....   ++||+|++.. 
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~-  147 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ-  147 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred             CCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence            4689999999999999998885 79999999999999998876431    1357999999998753   7899999741 


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                              .+|           ..+++.+.+.|+|||.+++...
T Consensus       148 --------~dp-----------~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          148 --------EPD-----------IHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             --------CCC-----------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred             --------CCh-----------HHHHHHHHHhcCCCcEEEEEcC
Confidence                    111           2389999999999999987643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.30  E-value=6.3e-12  Score=102.48  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=84.1

Q ss_pred             CcEEEecCCCChhhHHHHhcCC------CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI------TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~------~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      .+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...+. ++.++++|.... ....+||+|+++.
T Consensus       132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~-~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLAN-LLVDPVDVVISDL  209 (344)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred             CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCc-cccCCccEEEECC
Confidence            5899999999999999887632      3899999999999999999887765 689999998763 3357899999987


Q ss_pred             ccceeeecC-CCCCCCC-CccHH-HHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNS-GDPWNPQ-PETVT-KVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~-~~~~~~~-~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .++.+-.+. ..-|.+. +.... ....+++++.+.|+|||+++++..
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            765430000 0000000 00011 123689999999999999888764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.28  E-value=3e-11  Score=101.44  Aligned_cols=73  Identities=23%  Similarity=0.371  Sum_probs=63.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++.+++.|+++...++.+++.++++|+.+.    ++..++||+|+++
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCEEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            36899999999999999998854 9999999999999999999888877999999999872    2345689999973

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.28  E-value=8.7e-11  Score=94.40  Aligned_cols=121  Identities=13%  Similarity=0.054  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC---CceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~   75 (201)
                      |.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++++...++.++.++.+|+..+....   .+||.|++..
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~  182 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP  182 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence            578999999999999999885 22 399999999999999999999888888999999998764322   4799999632


Q ss_pred             c---cceeeecCCCCCCC--CCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 T---MEVLFVNSGDPWNP--QPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~---l~~~~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .   ...+-.+.+.+|..  .++...    ...++++.+.++++ ||++++.+++.
T Consensus       183 PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          183 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             CCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             CcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            1   11111112233321  111222    23467888888886 89988877653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.28  E-value=4.8e-11  Score=98.63  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=86.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC---------------------------------------CeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI---------------------------------------TAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~~~~~~~~~~~   41 (201)
                      +..|||.+||+|+++++++..+.                                       .+++|+|+++.+++.+++
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            35799999999999999886532                                       159999999999999999


Q ss_pred             HHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC--CcEEEEE
Q 028957           42 RLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLFISV  118 (201)
Q Consensus        42 ~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~~~  118 (201)
                      |+...++. .+.+.++|+.+++.+ .+||+|+++           +||........+...+.+.+.+.|++  ||.++++
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~N-----------PPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii  342 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISN-----------PPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL  342 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEEC-----------CCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             HHHHcCCCCceEEEECChHHCCcc-CCcCEEEEC-----------CchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence            99988864 599999999987654 489999985           34433333445677787777777766  9998888


Q ss_pred             ecCC
Q 028957          119 SFGQ  122 (201)
Q Consensus       119 ~~~~  122 (201)
                      +...
T Consensus       343 t~~~  346 (384)
T 3ldg_A          343 TNDT  346 (384)
T ss_dssp             ESCT
T ss_pred             ECCH
Confidence            7643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.28  E-value=2.2e-12  Score=99.73  Aligned_cols=96  Identities=9%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +++|||+|||+|.++..+++.+..+|+|+|+++.|++.++++.....   ..++.+...  .+  ++...+|.+.+..++
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~d~~~~D~v~  113 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--AD--FEQGRPSFTSIDVSF  113 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GG--CCSCCCSEEEECCSS
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hH--cCcCCCCEEEEEEEh
Confidence            46899999999999999999976699999999999998776432110   011212211  11  111123444432222


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..                  ...+++++.++|||||.+++.
T Consensus       114 ~~------------------l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          114 IS------------------LDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SC------------------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             hh------------------HHHHHHHHHHhccCCCEEEEE
Confidence            11                  156999999999999999886

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.28  E-value=1.1e-12  Score=104.00  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=72.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHh-hcCC-CceEEE--EcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGY-KEVKVL--EADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~-~~~~-~~i~~~--~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.  .+|+++|+++ ++..++++.. .... .++.++  ++|+..++  +++||+|+|...
T Consensus        83 g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG  157 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC
T ss_pred             CCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC
Confidence            468999999999999999988  4899999998 5322221100 0000 168888  89998765  678999999765


Q ss_pred             cceeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCc--EEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDG--LFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG--~l~~~~~~  121 (201)
                       +..    +.|      ..+..  .++++.+.++|+|||  .+++..+.
T Consensus       158 -~~~----~~~------~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          158 -ESN----PTA------AVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             -CCC----SCH------HHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             -cCC----Cch------hhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence             321    111      01111  247899999999999  98887776

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.28  E-value=3.1e-11  Score=99.85  Aligned_cols=110  Identities=13%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC---------------------------------------CeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI---------------------------------------TAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~~~~~~~~~~~   41 (201)
                      +.+|||++||+|.++++++..+.                                       .+|+|+|+++.+++.|++
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            36899999999999999876532                                       269999999999999999


Q ss_pred             HHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC--CcEEEEE
Q 028957           42 RLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLFISV  118 (201)
Q Consensus        42 ~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~~~  118 (201)
                      ++...++. ++++.++|+.+++.+ .+||+|+++-.           |.......++..++.+.+.+.|++  |+.++++
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP-----------yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPP-----------YGERLEDKDSVKQLYKELGYAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCC-----------CCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred             HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCC-----------CcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence            99888764 699999999987654 58999998643           332222335567777777777776  8888887


Q ss_pred             ecCC
Q 028957          119 SFGQ  122 (201)
Q Consensus       119 ~~~~  122 (201)
                      +...
T Consensus       344 t~~~  347 (385)
T 3ldu_A          344 TSYE  347 (385)
T ss_dssp             ESCT
T ss_pred             ECCH
Confidence            7643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=3.2e-11  Score=100.03  Aligned_cols=110  Identities=15%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC---------------------------------------CeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI---------------------------------------TAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~~~~~~~~~~~   41 (201)
                      +..|||.+||+|+++++++..+.                                       .+|+|+|+++.+++.|++
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            35799999999999999886532                                       159999999999999999


Q ss_pred             HHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC--CcEEEEE
Q 028957           42 RLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP--DGLFISV  118 (201)
Q Consensus        42 ~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~~~  118 (201)
                      ++...++. ++.+.++|+.+++.+ .+||+|+++-.           |............+.+.+.+.|++  ||.++++
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPP-----------Yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii  349 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPP-----------YGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL  349 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCC-----------CCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred             HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCC-----------CccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99988864 599999999987654 58999998633           322212234566677777666665  8998888


Q ss_pred             ecCC
Q 028957          119 SFGQ  122 (201)
Q Consensus       119 ~~~~  122 (201)
                      +...
T Consensus       350 t~~~  353 (393)
T 3k0b_A          350 TSYE  353 (393)
T ss_dssp             ECCT
T ss_pred             ECCH
Confidence            7643

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.27  E-value=2.7e-12  Score=103.05  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEEC----CHHHHHHHHHHHhhcCCCceEEEEc-ccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDL----SAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~----~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~   75 (201)
                      |.+|||+|||+|.++..+++. . +|+++|+    ++.++..+.  ....+.+++.++++ |+..++  ..+||+|+|..
T Consensus        83 g~~VLDlGcG~G~~s~~la~~-~-~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~  156 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL-K-NVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI  156 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS-T-TEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred             CCEEEEEcCCCCHHHHHHHhc-C-CEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence            468999999999999999988 3 7999998    454331110  11111257899998 887654  56899999976


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .++..     . |.   ........+++.+.++|+|||.+++..+..
T Consensus       157 ~~~~g-----~-~~---~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          157 GESSP-----N-PT---VEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCS-----S-HH---HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             ccccC-----c-ch---hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            65311     0 00   001111257889999999999998876654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.27  E-value=2.6e-12  Score=101.22  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-cCC-CceEEE--EcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-KGY-KEVKVL--EADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-~~~-~~i~~~--~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.  .+|+++|+++ ++..+++.... ... .++.++  ++|+..++  +++||+|+|...
T Consensus        75 g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~  149 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG  149 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc
Confidence            468999999999999999988  4899999988 43222111000 000 167888  88998765  678999999765


Q ss_pred             cceeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCc--EEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDG--LFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG--~l~~~~~~  121 (201)
                       +..    ++|      ..+..  .++++.+.++|+|||  .+++..+.
T Consensus       150 -~~~----~~~------~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          150 -ESS----PKW------SVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             -CCC----SCH------HHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             -ccC----Ccc------chhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             322    110      11111  248899999999999  98887776

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.27  E-value=3.4e-11  Score=100.83  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=75.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..++.+ +.++++|+.+...  .+||+|+++....  
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~--~~fD~Vv~dPPr~--  364 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV--KGFDTVIVDPPRA--  364 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC--TTCSEEEECCCTT--
T ss_pred             CCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc--cCCCEEEEcCCcc--
Confidence            46899999999999999998865 9999999999999999999888776 9999999987642  2899999732211  


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                   .  ....+++.+. .|+|+|.+++..
T Consensus       365 -------------g--~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          365 -------------G--LHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             -------------C--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred             -------------c--hHHHHHHHHH-hcCCCcEEEEEC
Confidence                         0  0123455444 489999888654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.25  E-value=1.8e-12  Score=95.56  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---CCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~~~l   77 (201)
                      |.+|||+|||.              + ++|+++.|++.++++...    ++++.++|+.++++   ++++||+|++..++
T Consensus        13 g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           13 GQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             TSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            46777887774              2 399999999999988643    48999999998776   78899999999888


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |++.              .+..+++++++++|||||++++..
T Consensus        74 ~~~~--------------~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           74 GSTT--------------LHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             TCCC--------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcc--------------cCHHHHHHHHHHHCCCCEEEEEEc
Confidence            7651              234789999999999999999854

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.21  E-value=5.4e-11  Score=94.93  Aligned_cols=75  Identities=20%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..  .++++++++|+.+++++..+||+|+++..++
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             cCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            46899999999999999999865 999999999999999998873  3589999999998877767899999876553

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.20  E-value=2.5e-11  Score=99.92  Aligned_cols=102  Identities=13%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCC-------------
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN-------------   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~-------------   65 (201)
                      +.+|||+|||+|.++..++.... +|+++|+++.+++.+++++..+++++++++++|+.+..  ...             
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~-~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  292 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFD-RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK  292 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSS-EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence            36899999999999999887544 99999999999999999999888888999999987531  111             


Q ss_pred             -CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           66 -DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        66 -~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                       .+||+|++.           +|.     .     .+..++.+.|+++|.+++++++...
T Consensus       293 ~~~fD~Vv~d-----------PPr-----~-----g~~~~~~~~l~~~g~ivyvsc~p~t  331 (369)
T 3bt7_A          293 SYQCETIFVD-----------PPR-----S-----GLDSETEKMVQAYPRILYISCNPET  331 (369)
T ss_dssp             GCCEEEEEEC-----------CCT-----T-----CCCHHHHHHHTTSSEEEEEESCHHH
T ss_pred             cCCCCEEEEC-----------cCc-----c-----ccHHHHHHHHhCCCEEEEEECCHHH
Confidence             379999862           221     0     1234455666789998888876543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.16  E-value=3.3e-11  Score=99.45  Aligned_cols=100  Identities=19%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhc---------------CCCceEEEEcccCCCC-C
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK---------------GYKEVKVLEADMLDLP-F   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~---------------~~~~i~~~~~d~~~~~-~   63 (201)
                      +.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++|+..+               +..++.++++|+..+. .
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            468999999999999999987 4348999999999999999999887               7656999999987642 1


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..++||+|+..            |.       -....+++.+.+.|++||.+++..
T Consensus       128 ~~~~fD~I~lD------------P~-------~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 RHRYFHFIDLD------------PF-------GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             STTCEEEEEEC------------CS-------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCEEEeC------------CC-------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            13579999952            11       012578888899999999877653

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.15  E-value=7.8e-11  Score=97.43  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCC--CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP--FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~--~~~~~~D~v~~~   74 (201)
                      |.+|||++||+|.++..++..  +..+|+++|+++.+++.+++|++.+++.+  +.++++|+....  ...++||+|++.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            468999999999999999985  43599999999999999999999988755  999999987631  124579999963


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                  |+       .....+++.+.+.|++||.+++..
T Consensus       133 ------------P~-------g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          133 ------------PF-------GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ------------CS-------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------CC-------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence                        21       112458888899999999877654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.13  E-value=9.3e-11  Score=98.76  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--------------ITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLPFS   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--------------~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~   64 (201)
                      +.+|||.|||+|.++..+++..              ...++|+|+++.+++.|+.++...+..  ++.+.++|....+..
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~  251 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS  251 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc
Confidence            3689999999999999887641              127999999999999999998877754  678899998775543


Q ss_pred             CCceeEEEeccccceeeecCCCCCCCC---CccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNPQ---PETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                       .+||+|+++..+...... ..++...   .........+++++.+.|+|||++.++.+
T Consensus       252 -~~fD~Iv~NPPf~~~~~~-~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          252 -TLVDVILANPPFGTRPAG-SVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             -SCEEEEEECCCSSCCCTT-CCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCcCEEEECCCCCCcccc-cchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence             489999998766543100 0000000   00011235789999999999999887764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.10  E-value=7.1e-10  Score=86.73  Aligned_cols=72  Identities=18%  Similarity=0.343  Sum_probs=60.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC----CCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS----NDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..  .++++++++|+.+++++    .++|| |+++..
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEEECC
T ss_pred             cCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEecCC
Confidence            46899999999999999999875 999999999999999998865  35899999999987643    34688 665543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.10  E-value=1.6e-10  Score=95.90  Aligned_cols=73  Identities=18%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc--CCCceEEEEcccCCC-CC-CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--GYKEVKVLEADMLDL-PF-SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-~~-~~~~~D~v~~~   74 (201)
                      |.+|||+|||+|..+..++..+. +|+++|+++.+++.+++++...  +..+++++++|+.+. +. +.++||+|++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            57899999999999999988876 9999999999999999999877  667899999999874 21 23579999974

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.10  E-value=1.2e-10  Score=96.96  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=75.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..+++.  ...+++|+|+++.+++.+         .++.++++|+..... .++||+|+++-.+.
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP-GEAFDLILGNPPYG  109 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC-SSCEEEEEECCCCC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCc-cCCCCEEEECcCcc
Confidence            358999999999999999875  223999999999988766         378999999987543 46899999864332


Q ss_pred             eeeecCCCCCC-CCCccH---------------HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWN-PQPETV---------------TKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~-~~~~~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..-.  ..++. ..+...               .....+++.+.++|+|||+++++...
T Consensus       110 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          110 IVGE--ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CBSC--TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             Cccc--ccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            1100  00000 000000               01236799999999999999887654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.10  E-value=2e-10  Score=91.43  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=70.0

Q ss_pred             CCcEEEecCCC------ChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEE-EEcccCCCCCCCCceeEE
Q 028957            1 MTSVLELGCGN------SRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKV-LEADMLDLPFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~------G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~~~~~D~v   71 (201)
                      |.+|||+|||+      |.  ..+++. +. .+|+++|+++.             ++++.+ +++|+.+++++ ++||+|
T Consensus        64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-~~fD~V  127 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-NKWDLI  127 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS-SCEEEE
T ss_pred             CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc-CcccEE
Confidence            46899999955      55  334443 32 39999999987             136788 99999887654 689999


Q ss_pred             EeccccceeeecCCCCC-CCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           72 IEKATMEVLFVNSGDPW-NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +++...+..    + .| .+..........+++++.++|||||.+++..+....
T Consensus       128 vsn~~~~~~----g-~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~  176 (290)
T 2xyq_A          128 ISDMYDPRT----K-HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  176 (290)
T ss_dssp             EECCCCCC--------CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             EEcCCcccc----c-cccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            986432211    0 01 011122345678999999999999999987665443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.10  E-value=8.7e-10  Score=85.67  Aligned_cols=72  Identities=17%  Similarity=0.388  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-CceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++...  ++++++++|+.+++++. ..| .|+++..
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~~~~~~~-~vv~nlP  103 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSY-KIFGNIP  103 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCC-EEEEECC
T ss_pred             CCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCcccCCCe-EEEEeCC
Confidence            46899999999999999999875 9999999999999999987643  58999999999887653 345 4555433

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.06  E-value=9.3e-12  Score=96.81  Aligned_cols=101  Identities=20%  Similarity=0.308  Sum_probs=74.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-CceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...  .++++++++|+.+++++. ++| .|+++..++.
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~~-~v~~id~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~  105 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHL  105 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCCCSSEE-EEEEECCSSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHhcc--CCceEEEECChhhcCcccCCCc-EEEEeCCccc
Confidence            35899999999999999999874 999999999999988877652  357999999999887653 678 6666533221


Q ss_pred             eeecCCCCCCCCCccHHHHHHH----------H----HHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAM----------L----EGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~----------l----~~~~~~L~~gG~l~~~~  119 (201)
                                    .......+          +    +.+.++|+|||.+.+..
T Consensus       106 --------------~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          106 --------------STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             --------------CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             --------------cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence                          01122222          2    56889999999977644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.04  E-value=1.7e-09  Score=95.84  Aligned_cols=110  Identities=14%  Similarity=0.120  Sum_probs=79.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcC------------------------------------------C-CeEEEEECCHHHHH
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG------------------------------------------I-TAITCIDLSAVAVE   37 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~------------------------------------------~-~~v~~vD~~~~~~~   37 (201)
                      +.+|||.+||+|.++++++..+                                          . ..++|+|+++.+++
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            3579999999999999887642                                          1 27999999999999


Q ss_pred             HHHHHHhhcCCCc-eEEEEcccCCCCCC--CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHH---HhhcccC
Q 028957           38 KMQERLLLKGYKE-VKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEG---VHRVLKP  111 (201)
Q Consensus        38 ~~~~~~~~~~~~~-i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~  111 (201)
                      .|++|+...++.+ +.+.++|+.++..+  .++||+|+++-.           |............+.+.   +.+.+.|
T Consensus       271 ~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP-----------YG~Rlg~~~~l~~ly~~l~~~lk~~~~  339 (703)
T 3v97_A          271 RARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPP-----------YGERLDSEPALIALHSLLGRIMKNQFG  339 (703)
T ss_dssp             HHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCC-----------CCC---CCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCC-----------ccccccchhHHHHHHHHHHHHHHhhCC
Confidence            9999999888654 89999999886432  338999998643           32211122344444444   4445568


Q ss_pred             CcEEEEEecC
Q 028957          112 DGLFISVSFG  121 (201)
Q Consensus       112 gG~l~~~~~~  121 (201)
                      ||.+++++..
T Consensus       340 g~~~~ilt~~  349 (703)
T 3v97_A          340 GWNLSLFSAS  349 (703)
T ss_dssp             TCEEEEEESC
T ss_pred             CCeEEEEeCC
Confidence            9999988754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.01  E-value=5.7e-10  Score=87.98  Aligned_cols=72  Identities=21%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-CceeEEEeccccc
Q 028957            3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKATME   78 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~l~   78 (201)
                      +|||+|||+|.++..+++.+. +|+++|+++++++.+++++..   .+++++++|+.+++++. ..+|.|+++..++
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhccCccEEEecCccc
Confidence            799999999999999999975 899999999999999998763   48999999998876543 2689998875543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.97  E-value=1.8e-10  Score=90.35  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=61.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCH-------HHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-CCC--Cce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSA-------VAVEKMQERLLLKGYK-EVKVLEADMLDL-P-FSN--DCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~-------~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~--~~~   68 (201)
                      +.+|||+|||+|.++..++..+. +|+++|+++       .+++.++++...+++. +++++++|+... + +++  ++|
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             cCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            46899999999999999999876 899999999       9999998877665543 499999998763 2 333  689


Q ss_pred             eEEEecccc
Q 028957           69 DVVIEKATM   77 (201)
Q Consensus        69 D~v~~~~~l   77 (201)
                      |+|+++..+
T Consensus       163 D~V~~dP~~  171 (258)
T 2r6z_A          163 DIVYLDPMY  171 (258)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999975443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.96  E-value=7.6e-09  Score=82.12  Aligned_cols=108  Identities=24%  Similarity=0.382  Sum_probs=82.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc-----CCCceEEEEcccCCC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v~~   73 (201)
                      +++||-+|.|.|..+.++++... .+|+.+|+++.+++.+++.+...     .-++++++.+|+... ....++||+|+.
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~  163 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS  163 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence            47899999999999999998743 49999999999999999887432     136899999999874 344678999995


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .         ..+|+.+..  .--...+++.+++.|+|||.++...
T Consensus       164 D---------~~dp~~~~~--~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          164 D---------CTDPIGPGE--SLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             S---------CCCCCCTTC--CSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             e---------CCCcCCCch--hhcCHHHHHHHHHHhCCCCEEEEec
Confidence            3         223432211  1123579999999999999988754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=2e-09  Score=92.69  Aligned_cols=119  Identities=12%  Similarity=0.003  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc----C---------------CCeEEEEECCHHHHHHHHHHHhhcCCCc-----eEEEEc
Q 028957            1 MTSVLELGCGNSRLSEGLYND----G---------------ITAITCIDLSAVAVEKMQERLLLKGYKE-----VKVLEA   56 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~---------------~~~v~~vD~~~~~~~~~~~~~~~~~~~~-----i~~~~~   56 (201)
                      +.+|||.|||+|.++..+++.    .               ...++|+|+++.+++.|+.++...+...     ..+.++
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            468999999999999888754    1               1279999999999999999987777654     788999


Q ss_pred             ccCCCC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           57 DMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        57 d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |....+ ....+||+|+++-.+....... ..+............+++.+.+.|+|||++.++.+
T Consensus       250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          250 NTLGSDGENLPKAHIVATNPPFGSAAGTN-ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CTTSHHHHTSCCEEEEEECCCCTTCSSCC-CCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcccccccccCCeEEEECCCcccccchh-hHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            976532 3346899999976554321000 00000000012234789999999999999887764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.90  E-value=1.4e-08  Score=87.33  Aligned_cols=121  Identities=19%  Similarity=0.201  Sum_probs=85.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC----CCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC--C-CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL--P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~----~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~--~-~~~~~~D~v   71 (201)
                      +.+|+|.+||+|.+...+++..    ...++|+|+++.+...|+.++...+.  +++.+.++|....  + ....+||+|
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I  301 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV  301 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence            3589999999999998887762    23899999999999999999887776  5688999998765  3 345789999


Q ss_pred             EeccccceeeecC----CCC-C---C-CCCccHHHHHHHHHHHhhccc-CCcEEEEEecCC
Q 028957           72 IEKATMEVLFVNS----GDP-W---N-PQPETVTKVMAMLEGVHRVLK-PDGLFISVSFGQ  122 (201)
Q Consensus        72 ~~~~~l~~~~~~~----~~~-~---~-~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  122 (201)
                      +++-.+..-....    .++ |   . ..+....+ -.+++.+.+.|+ +||++.++.+..
T Consensus       302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             EecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEecch
Confidence            9986654211000    000 0   0 00111111 258999999999 999988876543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.89  E-value=7.5e-09  Score=84.60  Aligned_cols=120  Identities=18%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC------CceEEEEcccCCCC-CCCCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY------KEVKVLEADMLDLP-FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~------~~i~~~~~d~~~~~-~~~~~~D~v~   72 (201)
                      |.+|||++||+|+-+..++..+.. .+++.|+++..++.+++++...+.      .++.+...|+..++ ...+.||.|+
T Consensus       149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VL  228 (359)
T 4fzv_A          149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVL  228 (359)
T ss_dssp             TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEE
Confidence            568999999999999999988665 899999999999999999876543      46788888887653 3457899999


Q ss_pred             eccccc----eeeecCCCCCCCCCccHH-------HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           73 EKATME----VLFVNSGDPWNPQPETVT-------KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        73 ~~~~l~----~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +...-.    .+.-  .+|.........       ...++|.+..+.|||||+|+..+++-
T Consensus       229 lDaPCSg~g~g~~r--~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          229 VDVPCTTDRHSLHE--EENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             EECCCCCHHHHTTC--CTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ECCccCCCCCcccc--cChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            532110    0100  111111111111       13578899999999999999888764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=2.1e-09  Score=85.95  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--C---CCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--F---SNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~---~~~~~D~v~~~   74 (201)
                      +.+|||+|||+|..+..+++..+ .+|+++|.++.+++.+++++...+ .++.++++|+..++  +   ...+||.|++.
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILMD  105 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence            46899999999999999998753 399999999999999999988776 68999999987753  1   12579999864

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.88  E-value=3.4e-08  Score=74.33  Aligned_cols=96  Identities=14%  Similarity=0.021  Sum_probs=71.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCC---------------C
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDL---------------P   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~---------------~   62 (201)
                      +++|||+||  |+-+..+++....+|+.+|.+++..+.++++++..+   ..++.++.+|+...               +
T Consensus        31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            368999998  566777776522399999999999999999999877   35799999996532               1


Q ss_pred             --------C-CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           63 --------F-SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        63 --------~-~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                              . ..++||+|+..+-                    .....+..+.+.|+|||.+++-
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~--------------------k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGR--------------------FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSS--------------------SHHHHHHHHHHHCSSCEEEEET
T ss_pred             HHhhhhhccccCCCCCEEEEeCC--------------------CchhHHHHHHHhcCCCeEEEEe
Confidence                    1 1367999996331                    1135566677999999998653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=1.2e-08  Score=80.72  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCe----EEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITA----ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~----v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~   64 (201)
                      +.+|||+|||+|.++..+++.+. .    |+++|+++.+++.++++.    .++++++++|+.+++++
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFG  105 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGG
T ss_pred             cCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChh
Confidence            46899999999999999998865 4    999999999999999884    24899999999987643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.84  E-value=5.9e-09  Score=81.23  Aligned_cols=70  Identities=21%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCc-eeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDC-FDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~D~v~~~   74 (201)
                      +.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++ .   ..+++++++|+.+++++... ...|+++
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~~i~~D~~~~~~~~~~~~~~vv~N  102 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLEVINEDASKFPFCSLGKELKVVGN  102 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEEEECSCTTTCCGGGSCSSEEEEEE
T ss_pred             cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeEEEEcchhhCChhHccCCcEEEEE
Confidence            468999999999999999998645999999999999999876 2   24899999999987654311 2255554

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.75  E-value=4.3e-08  Score=86.91  Aligned_cols=115  Identities=13%  Similarity=0.077  Sum_probs=75.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC----CeEEEEECCHHHHHHH--HHHHhh----cCCCceEEEEcccCCCC-CCCCcee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKM--QERLLL----KGYKEVKVLEADMLDLP-FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~----~~v~~vD~~~~~~~~~--~~~~~~----~~~~~i~~~~~d~~~~~-~~~~~~D   69 (201)
                      +.+|||.|||+|.++..++....    ..++|+|+++.+++.|  +.++..    .+.....+...|..... ....+||
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            35899999999999999887642    2899999999999999  444433    22333355555555422 2346899


Q ss_pred             EEEeccccceeeecCCCCCCCCC---------------------ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQP---------------------ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      +|+++-.+...       +....                     ........+++.+.+.|++||++.++.+..
T Consensus       402 VVIgNPPYg~~-------~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          402 VVVMNPPYVSG-------VTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             EEEECCBCCSS-------CCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             EEEECCCcccc-------ccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            99997444110       00000                     000113457889999999999999887653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.74  E-value=2.3e-08  Score=87.06  Aligned_cols=100  Identities=17%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             CcEEEecCCCChhhHHHHhc---CCC--eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYND---GIT--AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~---~~~--~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      ..|||+|||+|-++...+++   +..  +|+++|-++ +...+++....++ -++|+++.+|++++..+ .++|+|++=+
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw  436 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL  436 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence            36999999999995555444   322  799999997 4556666666665 35699999999998765 6899999743


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      .=..++            + +....++....+.|||||.++
T Consensus       437 MG~fLl------------~-E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          437 LGSFAD------------N-ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CBTTBG------------G-GCHHHHHHHHGGGEEEEEEEE
T ss_pred             Cccccc------------c-cCCHHHHHHHHHhcCCCcEEc
Confidence            222221            1 233467788889999999976

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.74  E-value=1.3e-08  Score=88.82  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=71.5

Q ss_pred             cEEEecCCCChhhHHHHhc----C---------CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCC---
Q 028957            3 SVLELGCGNSRLSEGLYND----G---------IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFS---   64 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~----~---------~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~---   64 (201)
                      .|||+|||+|-++...+.+    +         .. +|+++|.++.++..++.+.. ++ -++|+++.+|++++..+   
T Consensus       412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~  490 (745)
T 3ua3_A          412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKD  490 (745)
T ss_dssp             EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccccc
Confidence            6999999999997543222    2         22 99999999977766665554 34 34699999999987653   


Q ss_pred             --CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           65 --NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        65 --~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                        .+++|+|++=+.=.++             ..+....++..+.+.|||||.++
T Consensus       491 ~~~ekVDIIVSElmGsfl-------------~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          491 RGFEQPDIIVSELLGSFG-------------DNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             TTCCCCSEEEECCCBTTB-------------GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CCCCcccEEEEecccccc-------------chhccHHHHHHHHHhCCCCcEEE
Confidence              4789999974331111             12345668888889999999876

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.70  E-value=7e-09  Score=80.94  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCe--EEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-----CceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-----DCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~--v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~D~v~~   73 (201)
                      +.+|||+|||+|.++. +.. +. +  |+++|+++.+++.+++++...  ++++++++|+..++++.     +..+.|++
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~vvs   96 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             cCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEEEE
Confidence            4689999999999999 654 44 6  999999999999999876543  48999999998876432     13467777


Q ss_pred             ccc
Q 028957           74 KAT   76 (201)
Q Consensus        74 ~~~   76 (201)
                      +..
T Consensus        97 NlP   99 (252)
T 1qyr_A           97 NLP   99 (252)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            644

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.70  E-value=7.5e-08  Score=75.22  Aligned_cols=110  Identities=14%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||||||+|.++..++.. +...+.++|+..++....... ...+ .++..+..++....++..++|+|+|....+ 
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g-~~ii~~~~~~dv~~l~~~~~DlVlsD~apn-  151 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG-WNIITFKDKTDIHRLEPVKCDTLLCDIGES-  151 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT-GGGEEEECSCCTTTSCCCCCSEEEECCCCC-
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC-CCeEEEeccceehhcCCCCccEEEecCccC-
Confidence            357999999999999988776 444788888874321000000 0001 145556666554556678999999976554 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  121 (201)
                          ++.+|.+    ......+++.+.++|+|| |.+++-.+.
T Consensus       152 ----sG~~~~D----~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          152 ----SSSSVTE----GERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             ----CSCHHHH----HHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ----cCchHHH----HHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence                2333321    111224578889999999 999998887

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.70  E-value=2.5e-08  Score=85.87  Aligned_cols=112  Identities=12%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             cEEEecCCCChhhHHHHhcC----------------CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC-CC
Q 028957            3 SVLELGCGNSRLSEGLYNDG----------------ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP-FS   64 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~----------------~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~~   64 (201)
                      +|||.+||+|.+...+++..                ...++|+|+++.+++.|+.++...++. ++.+.++|....+ .+
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~  326 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP  326 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence            79999999999988875431                128999999999999999998777642 3334777766543 44


Q ss_pred             CCceeEEEeccccceeeecCCCCCCC---------------------CCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNP---------------------QPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..+||+|+++-.+..-      .|..                     .+.. ...-.+++.+.+.|+|||++.++.+.
T Consensus       327 ~~~fD~Iv~NPPf~~~------~~~~~~~~~d~r~~~g~~~~~~~~~~~~~-~~~~~Fl~~~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          327 DLRADFVMTNPPFNMK------DWWHEKLADDPRWTINTNGEKRILTPPTG-NANFAWMLHMLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             TCCEEEEEECCCSSCC------SCCCGGGTTCGGGEECCC--CEECCCCTT-CTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred             cccccEEEECCCcCCc------cccchhhhhhhhhhcCcccccccccCCCc-chhHHHHHHHHHHhccCceEEEEecc
Confidence            5789999997655421      0110                     0111 11126899999999999998877654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.64  E-value=4.1e-08  Score=76.79  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C-CceEEEEcccCCC-CCCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y-KEVKVLEADMLDL-PFSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~-~~i~~~~~d~~~~-~~~~~~~D~v   71 (201)
                      .+|||+|||+|..+..++..+. +|+++|.++.+...+++++...       + + .+++++++|+.+. +....+||+|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV  168 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence            7899999999999999999877 8999999998766666654321       1 2 4789999998763 3222469999


Q ss_pred             Eec
Q 028957           72 IEK   74 (201)
Q Consensus        72 ~~~   74 (201)
                      ++.
T Consensus       169 ~lD  171 (258)
T 2oyr_A          169 YLD  171 (258)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            863

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.63  E-value=8e-08  Score=78.89  Aligned_cols=123  Identities=13%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             CcEEEecCCCChhhHHHHhc------------C---CC-eEEEEECCHHHHHHHHHHHhhcC------------CCceEE
Q 028957            2 TSVLELGCGNSRLSEGLYND------------G---IT-AITCIDLSAVAVEKMQERLLLKG------------YKEVKV   53 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~------------~---~~-~v~~vD~~~~~~~~~~~~~~~~~------------~~~i~~   53 (201)
                      .+|+|+|||+|..+..+...            +   +. +|+..|+....-...-+.+....            ..+-.+
T Consensus        54 ~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f  133 (374)
T 3b5i_A           54 FTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYF  133 (374)
T ss_dssp             EEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSE
T ss_pred             eEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceE
Confidence            47999999999988877321            1   34 89999987665555544443211            001123


Q ss_pred             ---EEcccCCCCCCCCceeEEEeccccceeeecC-------CCCCCCCC----------------ccHHHHHHHHHHHhh
Q 028957           54 ---LEADMLDLPFSNDCFDVVIEKATMEVLFVNS-------GDPWNPQP----------------ETVTKVMAMLEGVHR  107 (201)
Q Consensus        54 ---~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~-------~~~~~~~~----------------~~~~~~~~~l~~~~~  107 (201)
                         +.+....-.++.+++|+|+++.++|++---.       ..+|++.-                --..+...+|+...+
T Consensus       134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~  213 (374)
T 3b5i_A          134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA  213 (374)
T ss_dssp             EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3333333347889999999999998762000       01122110                001256678999999


Q ss_pred             cccCCcEEEEEecCCcc
Q 028957          108 VLKPDGLFISVSFGQPH  124 (201)
Q Consensus       108 ~L~~gG~l~~~~~~~~~  124 (201)
                      .|+|||++++.....+.
T Consensus       214 eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          214 EVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HEEEEEEEEEEEEECCC
T ss_pred             HhCCCCEEEEEEecCCC
Confidence            99999999988775543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.56  E-value=4.1e-07  Score=74.85  Aligned_cols=120  Identities=15%  Similarity=0.065  Sum_probs=76.0

Q ss_pred             cEEEecCCCChhhHHHHhc-----------------CCC-eEEEEECC-----------HHHHHHHHHHHhhcC-CCceE
Q 028957            3 SVLELGCGNSRLSEGLYND-----------------GIT-AITCIDLS-----------AVAVEKMQERLLLKG-YKEVK   52 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~-----------------~~~-~v~~vD~~-----------~~~~~~~~~~~~~~~-~~~i~   52 (201)
                      +|+|+||++|..+..+...                 .+. .|+..|+.           +...+.+.+.   .+ ..+-.
T Consensus        55 ~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~~~  131 (384)
T 2efj_A           55 KVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIGSC  131 (384)
T ss_dssp             EEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTTSE
T ss_pred             EEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCCce
Confidence            6999999999988877654                 133 88889976           3333332221   11 01235


Q ss_pred             EEEcccCC---CCCCCCceeEEEeccccceeeecC-------CCCCCCCC--------c---------cHHHHHHHHHHH
Q 028957           53 VLEADMLD---LPFSNDCFDVVIEKATMEVLFVNS-------GDPWNPQP--------E---------TVTKVMAMLEGV  105 (201)
Q Consensus        53 ~~~~d~~~---~~~~~~~~D~v~~~~~l~~~~~~~-------~~~~~~~~--------~---------~~~~~~~~l~~~  105 (201)
                      |+.+...+   -.++.+++|+|+++.++|++---+       ..||++..        .         -..+...+|+..
T Consensus       132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R  211 (384)
T 2efj_A          132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH  211 (384)
T ss_dssp             EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555444   348899999999999999862110       11233211        0         012345568888


Q ss_pred             hhcccCCcEEEEEecCCccc
Q 028957          106 HRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus       106 ~~~L~~gG~l~~~~~~~~~~  125 (201)
                      .+.|+|||++++.....+..
T Consensus       212 a~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          212 SEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHEEEEEEEEEEEECCCTT
T ss_pred             HHHhccCCeEEEEEecCCCc
Confidence            99999999999988766543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.54  E-value=5.5e-07  Score=73.40  Aligned_cols=95  Identities=12%  Similarity=0.050  Sum_probs=67.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+||.+|+++..+++++. .|++||..+ +-.    .+..  .+++.++++|+.....+.+.+|+|+|..+.   
T Consensus       212 G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~----~l~~--~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---  280 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQ----SLMD--TGQVTWLREDGFKFRPTRSNISWMVCDMVE---  280 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCH----HHHT--TTCEEEECSCTTTCCCCSSCEEEEEECCSS---
T ss_pred             CCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cCh----hhcc--CCCeEEEeCccccccCCCCCcCEEEEcCCC---
Confidence            67899999999999999999987 999999754 111    1112  258999999999877667789999986553   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                   +......++.........++.++..-
T Consensus       281 -------------~p~~~~~l~~~wl~~~~~~~aI~~lK  306 (375)
T 4auk_A          281 -------------KPAKVAALMAQWLVNGWCRETIFNLK  306 (375)
T ss_dssp             -------------CHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred             -------------ChHHhHHHHHHHHhccccceEEEEEE
Confidence                         22444455555444444445555443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.49  E-value=2.3e-07  Score=72.48  Aligned_cols=103  Identities=12%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CcEEEecCCCChhhHHHHhc-------CC------CeEEEEECCH---HHHH-----------HHHHHHhhc--------
Q 028957            2 TSVLELGCGNSRLSEGLYND-------GI------TAITCIDLSA---VAVE-----------KMQERLLLK--------   46 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-------~~------~~v~~vD~~~---~~~~-----------~~~~~~~~~--------   46 (201)
                      .+|||+|+|+|..+..++..       .+      .+++++|..+   +.+.           .+++.+..+        
T Consensus        62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~  141 (257)
T 2qy6_A           62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  141 (257)
T ss_dssp             EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence            47999999999988776543       23      2899999876   4444           445544431        


Q ss_pred             ------CCCceEEEEcccCC-CC-CCC---CceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcE
Q 028957           47 ------GYKEVKVLEADMLD-LP-FSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGL  114 (201)
Q Consensus        47 ------~~~~i~~~~~d~~~-~~-~~~---~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~  114 (201)
                            +..+++++.+|+.+ ++ .+.   ..||+|+..            +|-+.. +.+- ...+++.+.+.|+|||+
T Consensus       142 r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD------------~fsp~~-~p~lw~~~~l~~l~~~L~pGG~  208 (257)
T 2qy6_A          142 RLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD------------GFAPAK-NPDMWTQNLFNAMARLARPGGT  208 (257)
T ss_dssp             EEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC------------SSCTTT-CGGGCCHHHHHHHHHHEEEEEE
T ss_pred             heeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC------------CCCccc-ChhhcCHHHHHHHHHHcCCCcE
Confidence                  12367789999876 33 222   279999852            222111 1111 36799999999999999


Q ss_pred             EEE
Q 028957          115 FIS  117 (201)
Q Consensus       115 l~~  117 (201)
                      ++.
T Consensus       209 l~t  211 (257)
T 2qy6_A          209 LAT  211 (257)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.47  E-value=3.1e-07  Score=74.91  Aligned_cols=121  Identities=12%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             cEEEecCCCChhhHHHHhc----------------CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCC---C
Q 028957            3 SVLELGCGNSRLSEGLYND----------------GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLD---L   61 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~----------------~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~---~   61 (201)
                      +|+|+||++|..+..+...                .+. .|+..|+....-..+.+.+..... .+..++.+...+   -
T Consensus        54 ~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~r  133 (359)
T 1m6e_X           54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR  133 (359)
T ss_dssp             CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred             EEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhc
Confidence            6899999999888766544                223 899999988777777766543110 022444444433   4


Q ss_pred             CCCCCceeEEEeccccceeeecCCCCCCC-----------CC--------ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           62 PFSNDCFDVVIEKATMEVLFVNSGDPWNP-----------QP--------ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~-----------~~--------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .++.+++|+|+++.++|++- ..+....+           ++        --..+...+|+...+.|+|||++++.....
T Consensus       134 lfp~~S~d~v~Ss~aLHWls-~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          134 LFPRNTLHFIHSSYSLMWLS-QVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CSCTTCBSCEEEESCTTBCS-SCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             cCCCCceEEEEehhhhhhcc-cCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence            58899999999999998762 11101000           00        013467788999999999999999887765


Q ss_pred             cc
Q 028957          123 PH  124 (201)
Q Consensus       123 ~~  124 (201)
                      +.
T Consensus       213 ~~  214 (359)
T 1m6e_X          213 RS  214 (359)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.47  E-value=4.8e-07  Score=74.02  Aligned_cols=110  Identities=21%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC--------CCceEEEEcccCCCC----CCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--------YKEVKVLEADMLDLP----FSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~----~~~~~~   68 (201)
                      +++||-+|.|.|..+.++++....+++.+|+++.+++.+++.+....        .++++++.+|+...-    -..++|
T Consensus       206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y  285 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF  285 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence            47899999999999999998766699999999999999998764321        135889999986521    124679


Q ss_pred             eEEEeccccceeeecCCCCCC-CCCc---cHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWN-PQPE---TVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |+|+....         +|.. ..|.   ...-.+.+++.+++.|+|||.++...
T Consensus       286 DvIIvDl~---------D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          286 DYVINDLT---------AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             EEEEEECC---------SSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEECCC---------CCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            99995321         1111 1111   12234688999999999999988643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.43  E-value=5.4e-08  Score=76.15  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=68.2

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||||||+|.+++.++.. +...|.++|+...+...+... ...+ .++.....++....++..++|+|+|....+ 
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv~~l~~~~~DvVLSDmApn-  167 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDVFNMEVIPGDTLLCDIGES-  167 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCGGGSCCCCCSEEEECCCCC-
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcchhhcCCCCcCEEEecCccC-
Confidence            358999999999999988865 444899999976432111100 0001 133344433332335568899999976654 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCC--cEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~l~~~~~~  121 (201)
                          ++.++.+    ......+++-+.++|+||  |.+++-.+.
T Consensus       168 ----sG~~~~D----~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          168 ----SPSIAVE----EQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             ----CSCHHHH----HHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             ----CCChHHH----HHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence                2332211    111224577788999999  999998887

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.31  E-value=2.3e-06  Score=67.57  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=76.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc----C--CCeEEEEECCHH--------------------------HHHHHHHHHhhcCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND----G--ITAITCIDLSAV--------------------------AVEKMQERLLLKGY   48 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~--~~~v~~vD~~~~--------------------------~~~~~~~~~~~~~~   48 (201)
                      +..|||+|+..|..+..++..    +  ..+++++|..+.                          .++.++++++..++
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            358999999999988887653    1  238999996321                          36678888888775


Q ss_pred             --CceEEEEcccCC-CC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           49 --KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        49 --~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                        ++++++.+|+.+ ++ .+.++||+|+...-                 ..+.....++.+.+.|+|||.+++-..
T Consensus       187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD-----------------~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD-----------------LYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC-----------------SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC-----------------ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence              689999999875 33 44567898885321                 124456889999999999999887554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.25  E-value=9.7e-07  Score=62.50  Aligned_cols=87  Identities=13%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             CCcEEEecCCCC-hhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC-CceeEEEecccc
Q 028957            1 MTSVLELGCGNS-RLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN-DCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G-~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~l   77 (201)
                      +.+|||+|||+| ..+..+++ .+. .|+++|+++..++               +++.|+++..... ..||+|.+..  
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~Y~~~DLIYsir--   97 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEIYRGAALIYSIR--   97 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHHHTTEEEEEEES--
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCcccccCCcCEEEEcC--
Confidence            358999999999 69999987 777 8999999886443               7889988733211 3799997632  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                      ...++...+.++.+..  |.-+++......
T Consensus        98 ----------------PP~El~~~i~~lA~~v--~adliI~pL~~E  125 (153)
T 2k4m_A           98 ----------------PPAEIHSSLMRVADAV--GARLIIKPLTGE  125 (153)
T ss_dssp             ----------------CCTTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred             ----------------CCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence                            2245555555555543  456776665543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.23  E-value=6.2e-06  Score=64.96  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +++||||||++|.++..+++. +...|.++|+...+...... ....+ .++.....++....+....+|+|++....+ 
T Consensus        82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~l~~~~~DlVlsD~APn-  158 (300)
T 3eld_A           82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFTMPTEPSDTLLCDIGES-  158 (300)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTTSCCCCCSEEEECCCCC-
T ss_pred             CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCceeeecCCCCcCEEeecCcCC-
Confidence            468999999999999999976 44489999986532100000 00001 123333333322334567899999865543 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  121 (201)
                          ++.+..    .......+++-+.++|+|| |.|++-.+.
T Consensus       159 ----sG~~~~----D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          159 ----SSNPLV----ERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             ----CSSHHH----HHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             ----CCCHHH----HHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence                122110    0111235577788999999 999998887

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.20  E-value=4e-06  Score=65.86  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~   73 (201)
                      +..++|++||.|+.+..+++.+. +|+|+|.++.+++.+++ +..   +++.+++++..++.     ...+++|.|++
T Consensus        23 gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence            46799999999999999999843 99999999999999998 654   48999999988753     22357999985

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.19  E-value=1.1e-05  Score=69.18  Aligned_cols=118  Identities=21%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc----C----------CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----
Q 028957            1 MTSVLELGCGNSRLSEGLYND----G----------ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~----------~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----   62 (201)
                      +.+|+|-+||+|++...+.+.    .          ...++|+|+++.+...++.++...+.....+..+|....+    
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~  297 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM  297 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence            468999999999998877653    1          1269999999999999999887777666677888866533    


Q ss_pred             CCCCceeEEEeccccceeeec---CCCCCCCCCccHHHHHHHHHHHhhccc-------CCcEEEEEec
Q 028957           63 FSNDCFDVVIEKATMEVLFVN---SGDPWNPQPETVTKVMAMLEGVHRVLK-------PDGLFISVSF  120 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~L~-------~gG~l~~~~~  120 (201)
                      .+..+||+|+++-.+..-.-.   ...|.  ..........+++.+.+.|+       +||++.++.+
T Consensus       298 ~~~~~fD~Il~NPPf~~~~~~~~~~~~~~--~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          298 GDKDRVDVILTNPPFGGEEEKGILGNFPE--DMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             CGGGCBSEEEECCCSSCBCCHHHHTTSCG--GGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             cccccceEEEecCCCCccccccccccCch--hcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            223579999997555321000   00000  00011123456777777776       7999887754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.02  E-value=1.3e-05  Score=63.74  Aligned_cols=45  Identities=16%  Similarity=0.040  Sum_probs=41.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      |+.|||++||+|..+..++..+. +++|+|+++.+++.+++++...
T Consensus       236 ~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          236 GDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999999998887 9999999999999999998654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.89  E-value=9.2e-06  Score=63.84  Aligned_cols=99  Identities=11%  Similarity=0.089  Sum_probs=73.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CC---CCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP---FSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~---~~~~~~D~v~~~~~   76 (201)
                      +..+||+-+|||.++.++++.+ .+++.+|.++...+..++++..  .++++++..|+.. +.   .+..+||+|++   
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi---  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFI---  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEE---
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEE---
Confidence            3568999999999999999855 6999999999999999998865  2579999999754 21   23346999996   


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEE
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFIS  117 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~  117 (201)
                              ++|+-    ...+..++++.+.+  .+.++|.+++
T Consensus       166 --------DPPYe----~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          166 --------DPSYE----RKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             --------CCCCC----STTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             --------CCCCC----CCcHHHHHHHHHHHhCccCCCeEEEE
Confidence                    34452    12456666666655  3468888765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.88  E-value=1.1e-05  Score=61.52  Aligned_cols=111  Identities=20%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|+||||++|.++..++.. +..+|+++|+...-.+.-+ .....+.+.+.+.++ |+..++  ..++|+|+|...= 
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIge-  154 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIGE-  154 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCCC-
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC--CccccEEEEecCC-
Confidence            358999999999999977665 5559999998653211000 011223457899999 986654  3669999985321 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                          .++.|+.    ......++|+-+.+.|++ |.+++-.+.+..
T Consensus       155 ----Ss~~~~v----E~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          155 ----SSPSPTV----EESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             ----CCSCHHH----HHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             ----CCCChhh----hhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence                1122211    111223477777899998 777777666544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.88  E-value=6.4e-06  Score=63.60  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhh-cCCCceEEEEc-ccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLL-KGYKEVKVLEA-DMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~-~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |.+|+||||++|.+++.+++. +...|.|.++..+.  ........ .+..-+.+.++ |+..++  ..++|+|+|...-
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAP  149 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGE  149 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECCCC
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--ccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCCCC
Confidence            568999999999999999886 11133444432220  00000000 11112355557 988743  4579999985432


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc-EEEEEecCC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG-LFISVSFGQ  122 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~l~~~~~~~  122 (201)
                      .     ++.+..+   + .....+++-+.++|+||| .+++-.+..
T Consensus       150 n-----SG~~~vD---~-~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          150 S-----SPSAEIE---E-QRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             C-----CSCHHHH---H-HHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             C-----CCccHHH---H-HHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            1     2221100   1 111125677778999999 888888874

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.80  E-value=5.2e-05  Score=59.65  Aligned_cols=110  Identities=18%  Similarity=0.246  Sum_probs=67.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+||||||++|.++..++.. +...|+|+|+...--+.-+ .....+.+-+.++.+ |+..++.  ..+|+|+|... .
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-e  170 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-E  170 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-C
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-c
Confidence            358999999999999966655 5558999998653110000 000111234777777 8766553  56999998533 1


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~~  122 (201)
                          .++.|+.    ......++|+-+.+.|++| |-+++-.+.+
T Consensus       171 ----Ss~~~~v----e~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          171 ----SSSSAEV----EEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             ----CCSCHHH----HHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             ----CCCChhh----hhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence                1222221    1112234777778899988 8888877766

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.58  E-value=2.3e-05  Score=77.87  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=52.4

Q ss_pred             CcEEEecCCCChhhHHHHhc-C-----CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYND-G-----ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~-----~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      .+|||+|+|+|..+..+... +     ..+++.+|+++...+.++++++..   .+.....|..+. ++....||+|++.
T Consensus      1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A         1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp             EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEEEEE
T ss_pred             ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEEEEc
Confidence            37999999999877665443 1     238999999988777777766542   222222233221 2345679999999


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++|..               .+....+.+++++|+|||.+++.+.
T Consensus      1319 ~vl~~t---------------~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1319 CALATL---------------GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             CC-----------------------------------CCEEEEEEC
T ss_pred             cccccc---------------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            988765               5667899999999999999888653

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.55  E-value=0.00016  Score=58.82  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      +.|||+|+|.|.+|..+++. .+.+|+++|+++..+...++.+ .  .++++++.+|+.++
T Consensus        60 ~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           60 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDW  117 (353)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCH
T ss_pred             CEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccch
Confidence            67999999999999999986 3448999999999999998876 2  35899999999654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.31  E-value=0.00042  Score=56.91  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---C-----CCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---F-----SNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~-----~~~~~D~v~~   73 (201)
                      .++|||.||.|.++..+.++|...+.++|+++.+++..+.|+     ++..++++|+.++.   +     ....+|+++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            479999999999999999999878889999999998888775     35577888988753   1     2457899985


Q ss_pred             c
Q 028957           74 K   74 (201)
Q Consensus        74 ~   74 (201)
                      .
T Consensus        78 g   78 (376)
T 3g7u_A           78 G   78 (376)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.25  E-value=0.00094  Score=52.62  Aligned_cols=105  Identities=11%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             CCcEEEecC------CCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEE
Q 028957            1 MTSVLELGC------GNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~------G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~   72 (201)
                      |++|||+||      -+|..  .+.+.++.  .|+++|+.+-.           .... .++++|...... .++||+|+
T Consensus       110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD~~~~~~-~~k~DLVI  174 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGDCATVHT-ANKWDLII  174 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESCGGGEEE-SSCEEEEE
T ss_pred             CCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEcccccccc-CCCCCEEE
Confidence            579999997      45653  23333443  89999996521           0112 459999766433 47899999


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +...-..    ++.--.+..+...-.+.+++-+.+.|+|||.|++-.+....
T Consensus       175 SDMAPNt----TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          175 SDMYDPR----TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             ECCCCTT----SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             ecCCCCc----CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            7533211    11111111123335677888889999999999998887665

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.07  E-value=0.00033  Score=56.77  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             CcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---CCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~   74 (201)
                      .+|||+.||.|.++..+.+.|  ...|.++|+++.+++..+.|+.     +..++.+|+.++..   +...+|+++..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            479999999999999999988  4489999999999999988864     33567888877531   11258999864

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.07  E-value=0.0013  Score=52.96  Aligned_cols=66  Identities=15%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~   74 (201)
                      .+++|+.||.|.++..+.+.|...+.++|+++.+++..+.++....       .+|+.++.. ....+|+++..
T Consensus        12 ~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           12 LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHhhCCCCCEEEEC
Confidence            5799999999999999999998789999999999999998874321       577776531 11358999864

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.05  E-value=0.0015  Score=52.51  Aligned_cols=69  Identities=12%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-CCceeEEE
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-NDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-~~~~D~v~   72 (201)
                      |..++|..||.|+.+..+++. ++. +|+|+|.++.+++.++ ++.   .+++.++.++...+.     .. .+++|.|+
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgIL  133 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---DPRFSIIHGPFSALGEYVAERDLIGKIDGIL  133 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---CTTEEEEESCGGGHHHHHHHTTCTTCEEEEE
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---CCcEEEEeCCHHHHHHHHHhcCCCCcccEEE
Confidence            467999999999999999987 444 9999999999999884 442   258899999877642     11 13588888


Q ss_pred             e
Q 028957           73 E   73 (201)
Q Consensus        73 ~   73 (201)
                      .
T Consensus       134 f  134 (347)
T 3tka_A          134 L  134 (347)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.89  E-value=0.013  Score=47.22  Aligned_cols=107  Identities=20%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC---------------------CCceEEEEcccC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---------------------YKEVKVLEADML   59 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~---------------------~~~i~~~~~d~~   59 (201)
                      ..|+.||||.......+...+.. .++=+|. +++++.-++.+...+                     .++..++..|+.
T Consensus        99 ~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           99 VQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             EEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             cEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            46999999999988888765333 6677776 777777666665531                     247889999987


Q ss_pred             CCC--------C-CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           60 DLP--------F-SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        60 ~~~--------~-~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +..        . ......++++-.++.++             ..+...++++.+.... |+|.+++.+...+
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-------------~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~  236 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYM-------------HNNESQLLINTIMSKF-SHGLWISYDPIGG  236 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGS-------------CHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCC-------------CHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence            631        1 23456788887888776             5577889999988876 7788766554433

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.59  E-value=0.0041  Score=49.73  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~   73 (201)
                      .+||||.||.|+++.-+.+.|...+.++|+++.+++.-+.|..      -.++.+|+.++.. .-...|+++.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~~~~D~l~g   67 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIG   67 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGSCCCSEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhCCcccEEEe
Confidence            4799999999999999988998888999999999888887752      2567889887642 1235798885

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.41  E-value=0.011  Score=47.99  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC----C-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~~D~v~~   73 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    +..  .++..+-.+    + ....+.+|+|+.
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~~~gg~D~vid  264 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVNFALE  264 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC--EEecCCccCHHHHHHHhcCCCCcEEEE
Confidence            57899999876 7777777775 554799999999988887653    221  122211111    0 111236999985


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...                     ....++...+.|+++|++++...
T Consensus       265 ~~g---------------------~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          265 STG---------------------SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             CSC---------------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCC---------------------CHHHHHHHHHHHhcCCEEEEeCC
Confidence            321                     13467788899999999887654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.34  E-value=0.0037  Score=50.37  Aligned_cols=68  Identities=18%  Similarity=0.312  Sum_probs=52.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      .+++|+.||.|.++..+.+.|.  ..+.++|+++.+++..+.|+.     ...++.+|+.++.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEec
Confidence            3799999999999999988886  478999999999988888764     3345678887653   222358998853

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.32  E-value=0.011  Score=46.89  Aligned_cols=68  Identities=19%  Similarity=0.069  Sum_probs=53.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCe--EEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---C-CCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITA--ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---S-NDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~--v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~~D~v~~~   74 (201)
                      .+++|+.||.|.++..+.+.|...  |.++|+++..++..+.+..     ...++.+|+.++..   + .+.+|+++..
T Consensus        17 ~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll~gg   90 (295)
T 2qrv_A           17 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLVIGG   90 (295)
T ss_dssp             EEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred             CEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEEEec
Confidence            479999999999999999998864  7999999999888777642     34678889887641   1 1368999864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.31  E-value=0.01  Score=49.12  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             CCcEEEecCCCChhhHHHH-hcCC--CeEEEEECCHHHHHHHHHHHhh---cCC-CceEEEEcccC
Q 028957            1 MTSVLELGCGNSRLSEGLY-NDGI--TAITCIDLSAVAVEKMQERLLL---KGY-KEVKVLEADML   59 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~-~~~~--~~v~~vD~~~~~~~~~~~~~~~---~~~-~~i~~~~~d~~   59 (201)
                      +..|+|+||+.|..+..++ ..+.  .+|+++|+++...+.+++++..   ++. +++.++..-+.
T Consensus       227 ~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          227 SEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4689999999999999887 4432  4999999999999999999886   235 67777665544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.30  E-value=0.0045  Score=49.76  Aligned_cols=66  Identities=14%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             cEEEecCCCChhhHHHHhcCC--CeE-EEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYNDGI--TAI-TCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~--~~v-~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      +++|+.||.|.++..+.+.|.  ..+ .++|+++.+++..+.|+...      ++.+|+.++.   ++...+|+++..
T Consensus        12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           12 NVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             EEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             EEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhccCCCCEEEec
Confidence            799999999999999998885  467 79999999999998887432      4567777653   222258998863

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.27  E-value=0.005  Score=49.36  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=40.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG   47 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~   47 (201)
                      |+.|||..||+|+.+....+.+. +++++|+++...+.+++++...+
T Consensus       253 ~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          253 DDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcc
Confidence            57899999999999999888887 99999999999999998876543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.10  E-value=0.15  Score=40.43  Aligned_cols=105  Identities=11%  Similarity=0.052  Sum_probs=73.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCC---------CCCCcee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLP---------FSNDCFD   69 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~---------~~~~~~D   69 (201)
                      ..|++||||-=.....+.......++=+| .+.+++..++.+...+   ..+..++..|+.+ .         +.....=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            46899999876554444321112788888 5999988888886432   2467889999876 2         2223344


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++++-++++++             ..+...++++.+...+.||+.+++....
T Consensus       182 ~~i~Egvl~Yl-------------~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          182 AWLAEGLLMYL-------------PATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             EEEECSCGGGS-------------CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             EEEEechHhhC-------------CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            66677788776             4467889999999998899888876544

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.09  E-value=0.042  Score=44.36  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-----cccCC-C--CCCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-----ADMLD-L--PFSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-----~d~~~-~--~~~~~~~D~   70 (201)
                      |++||-.|+|. |.++..+++. |...|+++|.+++..+.+++. ...   -+.+..     .|... +  ......+|+
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv  255 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---VVTHKVERLSAEESAKKIVESFGGIEPAV  255 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---CEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---cccccccccchHHHHHHHHHHhCCCCCCE
Confidence            57899999876 7777777776 553599999999999988865 221   122221     11110 0  012347899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      |+-...-                     ...++...+.|+++|++++....
T Consensus       256 vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          256 ALECTGV---------------------ESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             EEECSCC---------------------HHHHHHHHHHSCTTCEEEECCCC
T ss_pred             EEECCCC---------------------hHHHHHHHHHhcCCCEEEEEccC
Confidence            9853211                     24677788999999999887543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.00  E-value=0.0076  Score=48.26  Aligned_cols=44  Identities=18%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCH---HHHHHHHHHHhh
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSA---VAVEKMQERLLL   45 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~---~~~~~~~~~~~~   45 (201)
                      |+.|||..||+|+.+......+. +.+++|+++   ..++.+++++..
T Consensus       243 ~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          243 GSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence            57899999999999999988887 999999999   999999888754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.97  E-value=0.021  Score=46.04  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~   72 (201)
                      |++||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.    +..  .++..+-.+.     . .....+|+|+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT--DIINYKNGDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC--EEECGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc--eEEcCCCcCHHHHHHHHcCCCCCCEEE
Confidence            57899999876 7778888776 444899999999888877653    221  1221111110     0 1234699998


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ....-                     ...++...+.|+++|+++.....
T Consensus       241 d~~g~---------------------~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          241 IAGGD---------------------VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             ECSSC---------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             ECCCC---------------------hHHHHHHHHHHhcCCEEEEeccc
Confidence            53211                     13677788899999999877543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.85  E-value=0.039  Score=44.79  Aligned_cols=94  Identities=23%  Similarity=0.256  Sum_probs=61.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE---cccCC-C-C---CCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD-L-P---FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~-~-~---~~~~~~D~   70 (201)
                      |++||-.|+|. |..+..+++. |..+|+++|.+++..+.+++.    +...  ++.   .|... + .   ...+.+|+
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~--vi~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GATA--TVDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSE--EECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCE--EECCCCcCHHHHHHhhhhccCCCCCE
Confidence            57899999876 7777777776 555899999999988877653    3221  111   11100 0 1   22347999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      |+-...                     ....++...+.|+++|++++....
T Consensus       257 vid~~G---------------------~~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          257 VIECAG---------------------VAETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             EEECSC---------------------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEECCC---------------------CHHHHHHHHHHhccCCEEEEEecc
Confidence            985321                     134677888999999999876543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.75  E-value=0.018  Score=47.24  Aligned_cols=106  Identities=11%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC------C-CCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~-~~~~~~D~v   71 (201)
                      |++||.+|||. |.++..+++. |..+|+++|.+++.++.+++    .+.   .++..+-.+.      . .....+|+|
T Consensus       186 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~~g~g~Dvv  258 (398)
T 2dph_A          186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQILGKPEVDCG  258 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHhCCCCCCEE
Confidence            57899999976 7788888775 55589999999988877753    232   2222111111      0 112369999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....-.... .     .+ ..........++...+.|+++|++++...
T Consensus       259 id~~g~~~~~-~-----~~-~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          259 VDAVGFEAHG-L-----GD-EANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             EECSCTTCBC-S-----GG-GTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             EECCCCcccc-c-----cc-cccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            8532211000 0     00 00000012367788899999999886643

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.70  E-value=0.011  Score=49.96  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      -+++|+.||.|+++.-+.+.|...|.++|+++.+++.-+.++...  +...++.+|+.++
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i  146 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDI  146 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhh
Confidence            369999999999999998888877999999999988888775321  2345677887654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.51  E-value=0.0082  Score=48.73  Aligned_cols=90  Identities=11%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CcEEEec-CCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc--ccC-CC-CCCCCceeEEEec
Q 028957            2 TSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA--DML-DL-PFSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG-~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~-~~-~~~~~~~D~v~~~   74 (201)
                      ++||-.| +|. |..+..+++. +..+|++++.+++.++.+++    .+.+.  ++..  |.. .+ ....+.+|+|+..
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~--vi~~~~~~~~~v~~~~~~g~Dvvid~  246 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH--VIDHSKPLAAEVAALGLGAPAFVFST  246 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE--EECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCCHHHHHHHhcCCCceEEEEC
Confidence            5788888 554 8888888875 44499999999988887764    23221  1111  110 00 1234579998853


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..                     ....++.+.+.|+++|+++++
T Consensus       247 ~g---------------------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          247 TH---------------------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             SC---------------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             CC---------------------chhhHHHHHHHhcCCCEEEEE
Confidence            21                     134677888999999999876

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.43  E-value=0.1  Score=40.30  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=68.2

Q ss_pred             CcEEEecCCCChhhHHHHhc-------CC-CeEEEEE-----CCH----------------------HHHHHHHH---HH
Q 028957            2 TSVLELGCGNSRLSEGLYND-------GI-TAITCID-----LSA----------------------VAVEKMQE---RL   43 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-------~~-~~v~~vD-----~~~----------------------~~~~~~~~---~~   43 (201)
                      ..|+|+|+-.|..+..++..       +. .+++++|     ..+                      +.++...+   +.
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            56999999999988776542       22 3999999     221                      11222111   11


Q ss_pred             hhcC--CCceEEEEcccCCC-C-----CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE
Q 028957           44 LLKG--YKEVKVLEADMLDL-P-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF  115 (201)
Q Consensus        44 ~~~~--~~~i~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  115 (201)
                      ...+  .+++.++.+++.+. +     .+..++|++....-                 ..+.....++.+...|+|||.+
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-----------------~Y~~t~~~le~~~p~l~~GGvI  213 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-----------------LYEPTKAVLEAIRPYLTKGSIV  213 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-----------------CHHHHHHHHHHHGGGEEEEEEE
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-----------------ccchHHHHHHHHHHHhCCCcEE
Confidence            1222  26799999998752 2     23457899885321                 1245677899999999999999


Q ss_pred             EEEecCCc
Q 028957          116 ISVSFGQP  123 (201)
Q Consensus       116 ~~~~~~~~  123 (201)
                      ++-++..+
T Consensus       214 v~DD~~~~  221 (257)
T 3tos_A          214 AFDELDNP  221 (257)
T ss_dssp             EESSTTCT
T ss_pred             EEcCCCCC
Confidence            98776543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.42  E-value=0.042  Score=44.27  Aligned_cols=93  Identities=22%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc------cC-CC-CCCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------ML-DL-PFSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d------~~-~~-~~~~~~~D~   70 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++..+.+++    .+.+  .++..+      .. .+ ......+|+
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~~~~~g~D~  245 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD--LVLQISKESPQEIARKVEGQLGCKPEV  245 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--EEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC--EEEcCcccccchHHHHHHHHhCCCCCE
Confidence            57899999876 7777777775 54489999999988877764    2332  222211      10 00 001146899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+.....                     ...++...+.|+++|+++....
T Consensus       246 vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          246 TIECTGA---------------------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             EEECSCC---------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             EEECCCC---------------------hHHHHHHHHHhcCCCEEEEEec
Confidence            9853211                     2456778899999999987654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.23  E-value=0.02  Score=46.00  Aligned_cols=90  Identities=16%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++||-+|+|. |..+..+++. |. +|++++.+++..+.+++    .+...  ++ .+...+  . ..+|+|+....- 
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--v~-~~~~~~--~-~~~D~vid~~g~-  244 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVKH--FY-TDPKQC--K-EELDFIISTIPT-  244 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCSE--EE-SSGGGC--C-SCEEEEEECCCS-
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCCe--ec-CCHHHH--h-cCCCEEEECCCc-
Confidence            57899999876 7777777775 55 99999999888877754    33322  22 333222  2 278999853221 


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                          ...++...+.|+++|+++......
T Consensus       245 --------------------~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          245 --------------------HYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             --------------------CCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             --------------------HHHHHHHHHHHhcCCEEEEECCCC
Confidence                                124567788999999999875443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.23  E-value=0.18  Score=34.75  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=56.4

Q ss_pred             CcEEEecCCC-Chh-hHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEecc
Q 028957            2 TSVLELGCGN-SRL-SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~-G~~-~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~   75 (201)
                      .+|+=+|+|. |.. +..+...|. .|+++|.+++.++.+++    .   .+.++.+|..+..    ..-..+|++++..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            4688888865 332 223333455 89999999998877764    1   5578889876532    2235688888532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .                 . ......+-...+.+.|+..++.....
T Consensus        80 ~-----------------~-~~~n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           80 P-----------------N-GYEAGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             S-----------------C-HHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred             C-----------------C-hHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            1                 1 11122233345666788887765543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.23  E-value=0.045  Score=44.11  Aligned_cols=90  Identities=19%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             CcEEEecCCC-Chhh-HHHH-hc-CCCeEEEEECCHH---HHHHHHHHHhhcCCCceEEEEcccCCCCCC-----CCcee
Q 028957            2 TSVLELGCGN-SRLS-EGLY-ND-GITAITCIDLSAV---AVEKMQERLLLKGYKEVKVLEADMLDLPFS-----NDCFD   69 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~-~~l~-~~-~~~~v~~vD~~~~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~D   69 (201)
                      ++||-+|+|. |.++ ..++ +. |..+|++++.+++   ..+.+++    .+.   ..+  |..+..+.     .+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---~~v--~~~~~~~~~i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA---TYV--DSRQTPVEDVPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC---EEE--ETTTSCGGGHHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC---ccc--CCCccCHHHHHHhCCCCC
Confidence            7899999865 7777 7777 65 5535999999887   7777653    232   222  32211100     13689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|+-...-                     ...++...+.|+++|+++.....
T Consensus       245 vvid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          245 FIYEATGF---------------------PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             EEEECSCC---------------------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCC---------------------hHHHHHHHHHHhcCCEEEEEeCC
Confidence            98853211                     23567788999999998876543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.16  E-value=0.023  Score=44.95  Aligned_cols=85  Identities=15%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++||-.|+|. |..+..+++. |. +|++++ +++..+.+++.    +..  .++ .|...+   ...+|+|+-...  
T Consensus       143 g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~--~v~-~d~~~v---~~g~Dvv~d~~g--  208 (315)
T 3goh_A          143 QREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GVR--HLY-REPSQV---TQKYFAIFDAVN--  208 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TEE--EEE-SSGGGC---CSCEEEEECC----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CCC--EEE-cCHHHh---CCCccEEEECCC--
Confidence            57899999965 7777777776 66 999999 88878777653    221  222 242222   467999984211  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                          ...+....+.|+++|+++...
T Consensus       209 --------------------~~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          209 --------------------SQNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------------------TTGGGEEEEEEEEEEC
T ss_pred             --------------------chhHHHHHHHhcCCCEEEEEe
Confidence                                012356788999999988774

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.15  E-value=0.033  Score=43.88  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=41.4

Q ss_pred             CceEEEEcccCC-CC-CCCCceeEEEeccccceeeecCCCCCCCCCc----------------cHHHHHHHHHHHhhccc
Q 028957           49 KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPE----------------TVTKVMAMLEGVHRVLK  110 (201)
Q Consensus        49 ~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~L~  110 (201)
                      .++.++++|+.+ +. +++++||+|+++           +||.....                ....+..+++++.++|+
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtd-----------PPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk   88 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTS-----------PPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLV   88 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEEC-----------CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEEC-----------CCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcC
Confidence            467899999876 22 556899999985           44432110                01124567889999999


Q ss_pred             CCcEEEEEec
Q 028957          111 PDGLFISVSF  120 (201)
Q Consensus       111 ~gG~l~~~~~  120 (201)
                      |||.+++...
T Consensus        89 ~~G~l~i~~~   98 (297)
T 2zig_A           89 PGGRLVIVVG   98 (297)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9999887643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.14  E-value=0.08  Score=43.28  Aligned_cols=107  Identities=11%  Similarity=0.166  Sum_probs=61.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-----C-C-CCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-----L-P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~-~-~~~~~~D~v   71 (201)
                      |++||-+|+|. |.++..+++. |...|+++|.+++.++.+++    .+.   ..+...-.+     + . .....+|+|
T Consensus       186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t~g~g~Dvv  258 (398)
T 1kol_A          186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALLGEPEVDCA  258 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHhCCCCCCEE
Confidence            57899999876 7788888776 55479999999998888764    232   222211001     0 0 112368999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +-........    ..+  ...+.......++...+.|+++|++++...
T Consensus       259 id~~G~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          259 VDAVGFEARG----HGH--EGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EECCCTTCBC----SST--TGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             EECCCCcccc----ccc--ccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            8543211000    000  000001123467788899999999887643

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.09  E-value=0.045  Score=44.52  Aligned_cols=93  Identities=14%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc--cCCC-----CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD--MLDL-----PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~-----~~~~~~~D~v   71 (201)
                      |++||-+|+|. |.++..+++. |..+|+++|.+++.++.+++    .+.+  .++...  -.++     ....+.+|+|
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~i~~~~~gg~D~v  267 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN--EFVNPKDHDKPIQEVIVDLTDGGVDYS  267 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--EEEccccCchhHHHHHHHhcCCCCCEE
Confidence            57899999875 7777777776 55589999999988887753    2322  122111  0010     1123479999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +-...                     ....++...+.|+++ |+++++..
T Consensus       268 id~~g---------------------~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          268 FECIG---------------------NVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             EECSC---------------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             EECCC---------------------CHHHHHHHHHHhhccCCEEEEEcc
Confidence            85321                     134677888999997 99887654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.05  E-value=0.079  Score=43.48  Aligned_cols=99  Identities=14%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~   72 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++.++.+++.    +..  .++..+-.++     . .....+|+|+
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~i~~~t~g~g~D~vi  287 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD--HVIDPTKENFVEAVLDYTNGLGAKLFL  287 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS--EEECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC--EEEcCCCCCHHHHHHHHhCCCCCCEEE
Confidence            56899999875 7777777765 555899999999988888653    221  1221110110     0 1233699998


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      -...-                .......+++.+.+.++++|+++++...
T Consensus       288 d~~g~----------------~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          288 EATGV----------------PQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             ECSSC----------------HHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             ECCCC----------------cHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            53211                0012233333334555999999887543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.81  E-value=0.06  Score=43.03  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC------CCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF------SNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~v~   72 (201)
                      |++||-.|+|. |..+..+++. |. +|+++|.+++..+.+++    .+..  .++  |..+..+      ..+.+|+|+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~~i--~~~~~~~~~~~~~~~g~~d~vi  237 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE--VAV--NARDTDPAAWLQKEIGGAHGVL  237 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS--EEE--ETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC--EEE--eCCCcCHHHHHHHhCCCCCEEE
Confidence            56889999976 7888888776 55 99999999998887765    2322  122  2111110      113688887


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ....                     ....++...+.|+++|+++.....
T Consensus       238 d~~g---------------------~~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          238 VTAV---------------------SPKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             ESSC---------------------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EeCC---------------------CHHHHHHHHHHhccCCEEEEeCCC
Confidence            5321                     134677888999999999876543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.76  E-value=0.3  Score=39.75  Aligned_cols=96  Identities=26%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      .+||.++.+.|.++..++...   ++.+.-|--....++.|+..++++.  +.+...  .  .-....+|+|+...    
T Consensus        40 ~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~--~~~~~~~~~v~~~l----  108 (375)
T 4dcm_A           40 GPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDS--T--ADYPQQPGVVLIKV----  108 (375)
T ss_dssp             SCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T--SCCCSSCSEEEEEC----
T ss_pred             CCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c--cccccCCCEEEEEc----
Confidence            579999999999998887553   3444446666677888888877543  444322  1  12246789988521    


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                  |++.......+..+...|++|+.+++..-
T Consensus       109 ------------pk~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          109 ------------PKTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             ------------CSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             ------------CCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence                        24667889999999999999999887654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.72  E-value=0.15  Score=40.96  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc-CCC----C--CC---CCce
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDL----P--FS---NDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~----~--~~---~~~~   68 (201)
                      |++||-.|+|. |..+..+++. |. +|+++|.+++..+.+++    .+.+  .++..+- .+.    .  ..   ...+
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~i~~~~~~~~g~g~  241 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD--VTLVVDPAKEEESSIIERIRSAIGDLP  241 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS--EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC--EEEcCcccccHHHHHHHHhccccCCCC
Confidence            57899999875 6777777765 55 69999999988887764    2332  2221110 110    0  11   2468


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+|+.....                     ...++...+.|+++|+++....
T Consensus       242 D~vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          242 NVTIDCSGN---------------------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SEEEECSCC---------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            999853211                     2356778889999999987654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.66  E-value=0.084  Score=42.76  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-----cCC-C-CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~~D~v   71 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++..+.+++    .+.+  .++..+     +.. + ....+.+|+|
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~i~~~t~gg~Dvv  265 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEVICEKTNGGVDYA  265 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--EEEecccccchHHHHHHHHhCCCCCEE
Confidence            57899999876 7777777775 55489999999988877764    2322  122111     100 0 0112478999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +....                     ....++...+.|+++ |+++....
T Consensus       266 id~~g---------------------~~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          266 VECAG---------------------RIETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             EECSC---------------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             EECCC---------------------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence            85321                     134677888999999 99887654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.66  E-value=0.17  Score=40.36  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~v~   72 (201)
                      |++||-.|+|. |.++..+++. |...++++|.+++.++.+++.    +..  .++..+-.+..      .....+|+|+
T Consensus       161 g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~~~g~d~v~  234 (346)
T 4a2c_A          161 NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM--QTFNSSEMSAPQMQSVLRELRFNQLIL  234 (346)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred             CCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe--EEEeCCCCCHHHHHHhhcccCCccccc
Confidence            56889999876 5666666665 555789999999988877652    322  22211111100      1124578877


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ....                     ....++...+.|+++|++++....
T Consensus       235 d~~G---------------------~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          235 ETAG---------------------VPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             ECSC---------------------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cccc---------------------ccchhhhhhheecCCeEEEEEecc
Confidence            4321                     134677788999999998876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.65  E-value=0.2  Score=39.73  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             cEEEecCCCChhhHHHHh----cCCC---eEEEEECC------------HHHHHHHHHHHhhcCCC--ceEEEEcccCC-
Q 028957            3 SVLELGCGNSRLSEGLYN----DGIT---AITCIDLS------------AVAVEKMQERLLLKGYK--EVKVLEADMLD-   60 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~----~~~~---~v~~vD~~------------~~~~~~~~~~~~~~~~~--~i~~~~~d~~~-   60 (201)
                      +|||+|=|+|........    ..+.   +++.+|..            .+..+...+......-.  .+.+..+|+.. 
T Consensus        99 ~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~  178 (308)
T 3vyw_A           99 RILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKR  178 (308)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHHH
Confidence            699999999986543322    2332   66777742            11112221111111112  34567888865 


Q ss_pred             CC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcEEEE
Q 028957           61 LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        61 ~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~  117 (201)
                      ++ +....+|+++.    +.. ...        .+++- -..+++.+++.++|||++.-
T Consensus       179 l~~l~~~~~Da~fl----DgF-sP~--------kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          179 IKEVENFKADAVFH----DAF-SPY--------KNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             GGGCCSCCEEEEEE----CCS-CTT--------TSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HhhhcccceeEEEe----CCC-Ccc--------cCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            32 44457899884    221 111        11121 26899999999999998763

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.59  E-value=0.11  Score=42.05  Aligned_cols=93  Identities=13%  Similarity=0.173  Sum_probs=59.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-----cCC-C-CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~~D~v   71 (201)
                      |++||-+|+|. |.++..+++. |..+|+++|.+++..+.+++.    +..  .++...     +.. + ....+.+|+|
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~v~~~~~~g~D~v  264 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMTDGGVDYS  264 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEeccccccccHHHHHHHHhCCCCCEE
Confidence            57899999865 6777777765 554899999999888877643    322  122111     100 0 0112368999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +.....                     ...++...+.|+++ |+++....
T Consensus       265 id~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          265 FECIGN---------------------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             EECSCC---------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             EECCCc---------------------HHHHHHHHHhhccCCcEEEEEec
Confidence            853211                     24677888999999 99887654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.50  E-value=0.48  Score=36.11  Aligned_cols=116  Identities=9%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             CCcEEEecCC--CC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCG--NS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G--~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|-.|++  .|   .++..+++.|. +|++++.+....+.+.+.....+..++.++..|+.+..     +     ..
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4678888876  33   24445556677 89999988766665555544444336889999988642     0     01


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHH-----------HHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKV-----------MAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......- ....+...  ...+..           ..+++.+.+.++++|.++.+..
T Consensus        86 g~id~li~~Ag~~~~~-~~~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           86 GVIHGIAHCIAFANKE-ELVGEYLN--TNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             SCCCEEEECCCCCCGG-GGSSCGGG--CCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             CCeeEEEEcccccccc-ccccchhh--ccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            3678888765432100 00000000  011222           2356677778888899887653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.48  E-value=0.68  Score=35.84  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C--------C--CCC
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--------F--SND   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--------~--~~~   66 (201)
                      ++||--|++ |.++..+    ++.|. +|++++.+....+.+.+.+...+-.++.++..|+.+. .        .  ..+
T Consensus        13 k~vlITGas-~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g   90 (311)
T 3o26_A           13 RCAVVTGGN-KGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG   90 (311)
T ss_dssp             CEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             cEEEEecCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence            456666655 5454444    44566 8999999998887777776655445789999998774 2        0  014


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        91 ~iD~lv~nAg~  101 (311)
T 3o26_A           91 KLDILVNNAGV  101 (311)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            68999976554

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.47  E-value=0.068  Score=42.80  Aligned_cols=94  Identities=13%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc--cCC-C-CC-CCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD--MLD-L-PF-SNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~-~-~~-~~~~~D~v~~   73 (201)
                      |++||-.|+|. |..+..+++. +..+|+++|.+++..+.+++    .+.+.  ++..+  ..+ + .. ....+|+|+-
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~v~~~t~g~g~d~v~d  245 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA--AVKSGAGAADAIRELTGGQGATAVFD  245 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE--EEECSTTHHHHHHHHHGGGCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE--EEcCCCcHHHHHHHHhCCCCCeEEEE
Confidence            56899999876 7777777775 34599999999998887765    23222  22111  100 0 01 1236899885


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...-                     ...++...+.|+++|++++....
T Consensus       246 ~~G~---------------------~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          246 FVGA---------------------QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             SSCC---------------------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCC---------------------HHHHHHHHHHHhcCCEEEEECCC
Confidence            3211                     24677888999999999877543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.36  E-value=0.092  Score=42.44  Aligned_cols=88  Identities=19%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCH---HHHHHHHHHHhhcCCCceEEEEcccCCCCCC------CCcee
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSA---VAVEKMQERLLLKGYKEVKVLEADMLDLPFS------NDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~D   69 (201)
                      |++||-.|+|. |..+..+++. |. +|++++.++   +..+.+++.    +.   ..+  | .+ .+.      .+.+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----ga---~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----KT---NYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----TC---EEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----CC---cee--c-hH-HHHHHHHHhCCCCC
Confidence            46899999854 5555566554 66 999999987   766666542    32   222  2 22 111      14589


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHH-HHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAML-EGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|+.....                     ...+ +...+.|+++|+++.....
T Consensus       249 ~vid~~g~---------------------~~~~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          249 VIIDATGA---------------------DVNILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             EEEECCCC---------------------CTHHHHHHGGGEEEEEEEEECSCC
T ss_pred             EEEECCCC---------------------hHHHHHHHHHHHhcCCEEEEEecC
Confidence            99854221                     1245 7788999999998876543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.28  E-value=0.13  Score=41.16  Aligned_cols=91  Identities=20%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      |++||-+|+|. |..+..+++. |..+|++++.+++..+.+++.    +..  .++  |..+..        .....+|+
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~--~~~--~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD--YVI--NPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS--EEE--CTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EEE--CCCCcCHHHHHHHHcCCCCCCE
Confidence            57899999964 6667777665 444899999999888777642    221  112  211110        11236899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+.....                     ...++...+.|+++|+++....
T Consensus       240 vid~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          240 FLEFSGA---------------------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEECSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC---------------------HHHHHHHHHHHhcCCEEEEEcc
Confidence            9853211                     2466778889999999887654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.15  E-value=0.1  Score=42.31  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc--CCC-----CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--LDL-----PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~-----~~~~~~~D~v   71 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++.++.+++    .+..  .++...-  .++     ....+.+|+|
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~~~~g~D~v  266 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DFVNPNDHSEPISQVLSKMTNGGVDFS  266 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc--eEEeccccchhHHHHHHHHhCCCCCEE
Confidence            57899999865 7777777775 44489999999988887764    2322  1221110  000     0112368999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +.....                     ...++...+.|+++ |+++....
T Consensus       267 id~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          267 LECVGN---------------------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             EECSCC---------------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             EECCCC---------------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            853211                     24677888999999 99887654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.12  E-value=0.099  Score=42.37  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-----cCC-C-CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~~D~v   71 (201)
                      |++||-+|+|. |.++..+++. |..+|+++|.+++..+.+++    .+..  .++..+     +.. + ....+.+|+|
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~v~~~~~~g~Dvv  269 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--DCLNPRELDKPVQDVITELTAGGVDYS  269 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc--EEEccccccchHHHHHHHHhCCCccEE
Confidence            57899999875 7777777775 54489999999988877754    2322  122111     100 0 0112368999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +-...                     ....++...+.|+++ |++++...
T Consensus       270 id~~G---------------------~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          270 LDCAG---------------------TAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             EESSC---------------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             EECCC---------------------CHHHHHHHHHHhhcCCCEEEEECC
Confidence            85321                     134677888999999 99887654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.04  E-value=0.1  Score=42.08  Aligned_cols=92  Identities=16%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~   72 (201)
                      |++||-+|+|. |..+..+++. |. +|++++.+++.++.+++.    +..  .++..+..++     . .....+|+|+
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~~~g~g~D~vi  262 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD--HGINRLEEDWVERVYALTGDRGADHIL  262 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC--EEEcCCcccHHHHHHHHhCCCCceEEE
Confidence            57899999876 7777777775 55 999999999888887653    322  2222111111     0 1223699998


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ....                      ...++...+.|+++|++++....
T Consensus       263 d~~g----------------------~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          263 EIAG----------------------GAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             EETT----------------------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCC----------------------hHHHHHHHHHhhcCCEEEEEecC
Confidence            5322                      12456677899999999887543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.03  E-value=0.016  Score=46.59  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc---CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE----cccC-CCCCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE----ADML-DLPFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~---~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~----~d~~-~~~~~~~~~D~v   71 (201)
                      |++||-+|+|. |..+..+++.   |. +|++++.+++..+.+++.    +...  ++.    .|.. .+. ....+|+|
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~-~g~g~D~v  242 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GADY--VSEMKDAESLINKLT-DGLGASIA  242 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCSE--EECHHHHHHHHHHHH-TTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCCE--EeccccchHHHHHhh-cCCCccEE
Confidence            57899999965 6677777665   45 899999999888877652    2221  121    1111 111 12369999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +.....                     ...++...+.|+++|+++....
T Consensus       243 id~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          243 IDLVGT---------------------EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EESSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCC---------------------hHHHHHHHHHhhcCCEEEEeCC
Confidence            853221                     2367778899999999887654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.03  E-value=0.097  Score=38.21  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             CCcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||..|++  .|..+..++.. |. +|++++.+++..+.+++    .+..  ..+  |..+..        .....+|
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~~~--d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--YVG--DSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--EEE--ETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--EEe--eCCcHHHHHHHHHHhCCCCCe
Confidence            4689999853  35555555443 66 89999999887766543    2321  111  322211        1123689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+..                      ...++...+.|+++|+++....
T Consensus       110 ~vi~~~g----------------------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          110 VVLNSLA----------------------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEECCC----------------------THHHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCc----------------------hHHHHHHHHHhccCCEEEEEcC
Confidence            9985321                      1356778899999999887643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.03  E-value=0.052  Score=43.36  Aligned_cols=61  Identities=25%  Similarity=0.384  Sum_probs=42.8

Q ss_pred             CceEEEEcccCC-CC-CCCCceeEEEeccccceeeecCCCCCCCCCc----------cHHHHHHHHHHHhhcccCCcEEE
Q 028957           49 KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPE----------TVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        49 ~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      ....++++|+.. +. ++++++|+|++.           +||.....          -...+...++++.++|+|||.++
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tD-----------PPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~   81 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTS-----------PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFV   81 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEEC-----------CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEEC-----------CCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEE
Confidence            357889999865 33 567899999973           45543210          11246788999999999999988


Q ss_pred             EEec
Q 028957          117 SVSF  120 (201)
Q Consensus       117 ~~~~  120 (201)
                      +...
T Consensus        82 i~~~   85 (323)
T 1boo_A           82 VDFG   85 (323)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.02  E-value=0.13  Score=41.54  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-----cCC-C-CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-----MLD-L-PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~~D~v   71 (201)
                      |++||-+|+|. |..+..+++. |..+|+++|.+++..+.+++    .+..  .++..+     +.. + ....+.+|+|
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~~~~g~D~v  265 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLTEMSNGGVDFS  265 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc--eEecccccchhHHHHHHHHhCCCCcEE
Confidence            57899999876 7777777765 54489999999888877754    2322  122111     100 0 0112368999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  120 (201)
                      +.....                     ...++...+.|+++ |+++....
T Consensus       266 id~~g~---------------------~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          266 FEVIGR---------------------LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             EECSCC---------------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             EECCCC---------------------HHHHHHHHHHhhcCCcEEEEecc
Confidence            853211                     24677788999999 99887653

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.00  E-value=0.044  Score=43.98  Aligned_cols=91  Identities=15%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             CCcEEEe-cCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc--ccCC-C-CCCCCceeEEEe
Q 028957            1 MTSVLEL-GCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA--DMLD-L-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDl-G~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~D~v~~   73 (201)
                      |++||-. |+|. |..+..+++. |. +|++++.+++.++.+++.    +.+.  ++..  |... + ......+|+|+.
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~~~g~Dvv~d  223 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GADI--VLNHKESLLNQFKTQGIELVDYVFC  223 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCSE--EECTTSCHHHHHHHHTCCCEEEEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCcE--EEECCccHHHHHHHhCCCCccEEEE
Confidence            4678888 4544 6677777665 55 999999999888887763    2221  1111  1000 0 012346999885


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...                     ....++.+.+.|+++|+++...
T Consensus       224 ~~g---------------------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          224 TFN---------------------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             SSC---------------------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             CCC---------------------chHHHHHHHHHhccCCEEEEEC
Confidence            321                     1346677889999999987653

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.86  E-value=0.19  Score=41.27  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             cEEEecCCCChhhHHHHhc---C----CC-eEEEEECCHHHHHHHHHHHhh
Q 028957            3 SVLELGCGNSRLSEGLYND---G----IT-AITCIDLSAVAVEKMQERLLL   45 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~---~----~~-~v~~vD~~~~~~~~~~~~~~~   45 (201)
                      .|+|+|+|+|.++..+++.   .    .. +++.||+|+...+.-++.+..
T Consensus        83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            5999999999998888653   1    12 899999999988877766644

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.85  E-value=0.12  Score=41.35  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=57.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~v   71 (201)
                      |++||-.|+|. |..+..+++. |. +|++++.+++.++.+++    .+..  .+  .|..+..       .. +.+|+|
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~~--~d~~~~~~~~~~~~~~-~~~d~v  234 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD--LV--VNPLKEDAAKFMKEKV-GGVHAA  234 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS--EE--ECTTTSCHHHHHHHHH-SSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC--EE--ecCCCccHHHHHHHHh-CCCCEE
Confidence            57899999864 6666666654 55 99999999988887754    2322  11  1222111       01 468998


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +.....                     ...++...+.|+++|+++....
T Consensus       235 id~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          235 VVTAVS---------------------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EESSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCC---------------------HHHHHHHHHHhhcCCEEEEecc
Confidence            853221                     2466778889999999887654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.77  E-value=0.11  Score=42.36  Aligned_cols=94  Identities=14%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc------cC-CC-C-CCCCcee
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD------ML-DL-P-FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d------~~-~~-~-~~~~~~D   69 (201)
                      |++||-.|+|. |..+..+++... .+|++++.+++.++.+++    .+..  .++..+      +. .+ . .....+|
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~v~~~~~g~g~D  269 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMDITHGRGAD  269 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc--EEEeccccCcchHHHHHHHHhCCCCCc
Confidence            57899999765 777777777633 499999999988887764    2322  222211      10 01 0 1223699


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|+.....                     ...++...+.|+++|+++.....
T Consensus       270 vvid~~g~---------------------~~~~~~~~~~l~~~G~iv~~G~~  300 (380)
T 1vj0_A          270 FILEATGD---------------------SRALLEGSELLRRGGFYSVAGVA  300 (380)
T ss_dssp             EEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCC---------------------HHHHHHHHHHHhcCCEEEEEecC
Confidence            99853211                     13567778899999998876543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.77  E-value=0.16  Score=40.08  Aligned_cols=90  Identities=13%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             cEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCC-CCCCCceeEEEecccc
Q 028957            3 SVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDL-PFSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~~D~v~~~~~l   77 (201)
                      +||-.|+ | .|..+..+++. |. +|++++.+++..+.+++.    +.+.  ++. .+.... ....+.+|+|+-... 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~~~d~v~d~~g-  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GANR--ILSRDEFAESRPLEKQLWAGAIDTVG-  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCSE--EEEGGGSSCCCSSCCCCEEEEEESSC-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCCE--EEecCCHHHHHhhcCCCccEEEECCC-
Confidence            4888887 4 37777777776 55 999999999888888652    3221  121 111111 123357898874211 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                           ...++...+.|+++|+++.+...
T Consensus       221 ---------------------~~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          221 ---------------------DKVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             ---------------------HHHHHHHHHTEEEEEEEEECCCT
T ss_pred             ---------------------cHHHHHHHHHHhcCCEEEEEecC
Confidence                                 12778888999999999876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.75  E-value=0.76  Score=31.30  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++|+-+|+|.  ++..++    ..|. +|+++|.+++.++.+.+.       .+.++.+|..+..    .....+|+|+.
T Consensus         7 ~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            7 YEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            4788888854  444443    3466 899999999887766542       4577888876531    22346788886

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.52  E-value=0.45  Score=36.21  Aligned_cols=106  Identities=14%  Similarity=0.279  Sum_probs=62.9

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-C---------CCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-F---------SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~   66 (201)
                      |+++|--|++. .++..    +++.|. +|++++.+++.++...+.+.    .++.++..|+.+.. .         ..+
T Consensus         8 gk~~lVTGas~-gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            8 GKKAIVIGGTH-GMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG----PRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TCEEEEETCSS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35677777654 44444    445576 89999999888777666542    36788999987632 0         114


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..|+++.+......     .|...  ...++           .-.+.+.+.+.++++|.++.+.
T Consensus        82 ~id~lv~nAg~~~~-----~~~~~--~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           82 AIDLLHINAGVSEL-----EPFDQ--VSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SEEEEEECCCCCCC-----BCGGG--CCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCC-----CChhh--CCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            68998876543211     01000  01122           2234566667777788887664

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.49  E-value=0.93  Score=35.27  Aligned_cols=114  Identities=11%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCcEEEecCCCC-----hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCGNS-----RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G-----~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|--|+++|     .++..+++.|. +|+.++.++...+.+.+.....+  ++.++..|+.+..     +     ..
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            467888887643     24445556677 89999998765555554444333  6788899987632     0     12


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......- ....|+..  ...++           ...+.+.+.+.++++|.++.+..
T Consensus       108 g~iD~lVnnAG~~~~~-~~~~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKD-ELTGRYID--TSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             SCCSEEEECCCCCCHH-HHTSCGGG--CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCCCEEEECCccCCcc-cccccccc--cCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            4689998765432100 00000000  01122           22455666677778899887653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.26  E-value=0.18  Score=40.08  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEE
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v   71 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.    +..  .++..+-.+.     . .....+|+|
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~~~~~~~~~~~~~~~~~~~~~g~D~v  221 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEY----GAE--YLINASKEDILRQVLKFTNGKGVDAS  221 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEEeCCCchHHHHHHHHhCCCCceEE
Confidence            568899984 3 36666666665 55 999999999888776542    321  2222111111     0 123469999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....-                      ..++...+.|+++|+++....
T Consensus       222 id~~g~----------------------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          222 FDSVGK----------------------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EECCGG----------------------GGHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCh----------------------HHHHHHHHHhccCCEEEEEcC
Confidence            853221                      356677889999999887654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.21  E-value=0.03  Score=45.53  Aligned_cols=90  Identities=20%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc---ccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~D~v~~~~   75 (201)
                      |++||-+|+|. |..+..+++. |. +|++++.+++.++.+++.    +..  .++..   |... ... +.+|+|+...
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~-~~~-~g~Dvvid~~  265 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMA-AHL-KSFDFILNTV  265 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHH-TTT-TCEEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc--EEeccccHHHHH-Hhh-cCCCEEEECC
Confidence            57899999875 7777777765 55 799999999888877652    322  12211   1100 111 4689998532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .-                     ...++...+.|+++|+++....
T Consensus       266 g~---------------------~~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          266 AA---------------------PHNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             SS---------------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             CC---------------------HHHHHHHHHHhccCCEEEEecc
Confidence            21                     1135567789999999887643

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.16  E-value=0.12  Score=47.45  Aligned_cols=51  Identities=24%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             cEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc
Q 028957            3 SVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM   58 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~   58 (201)
                      ++|||.||.|+++.-+.++|. ..+.++|+++.+.+..+.|+.     ...++..|+
T Consensus       542 ~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI  593 (1002)
T 3swr_A          542 RTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDC  593 (1002)
T ss_dssp             EEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCH
T ss_pred             eEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----CCccccccH
Confidence            689999999999999988887 578999999999888877753     345555554

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.11  E-value=0.18  Score=39.89  Aligned_cols=92  Identities=14%  Similarity=0.088  Sum_probs=57.7

Q ss_pred             CCcEEEec-CCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEE
Q 028957            1 MTSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG-~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v   71 (201)
                      |++||-.| +|. |..+..+++. |. +|++++.+++.++.+++.    +..  .++..+-.+.     . .....+|+|
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~~~~~~~~~g~Dvv  213 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW--ETIDYSHEDVAKRVLELTDGKKCPVV  213 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEEeCCCccHHHHHHHHhCCCCceEE
Confidence            56888888 333 6677666665 66 899999999888877653    221  1221111110     0 123469999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +....-                      ..+....+.|+++|+++.....
T Consensus       214 id~~g~----------------------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          214 YDGVGQ----------------------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             EESSCG----------------------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             EECCCh----------------------HHHHHHHHHhcCCCEEEEEecC
Confidence            853221                      2556778899999999887543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.07  E-value=0.69  Score=33.11  Aligned_cols=64  Identities=20%  Similarity=0.254  Sum_probs=39.4

Q ss_pred             CcEEEecCCC-Chh-hHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CC-CCCceeEEEe
Q 028957            2 TSVLELGCGN-SRL-SEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PF-SNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~-G~~-~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~-~~~~~D~v~~   73 (201)
                      ++|+-+|+|. |.. +..+... +. .|+++|.+++.++.+++    .   .+.++.+|..+.    .. ....+|+|+.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E---GRNVISGDATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T---TCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C---CCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence            5788888764 322 2333344 55 89999999987766543    2   345666776542    11 2346898886

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.06  E-value=0.14  Score=40.87  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C-C-CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~-~-~~~~~~D~v~~~   74 (201)
                      |++||-+|+|+ |.++..+++ .+..+|+++|.+++.++.+++.    +... +.....|..+ + . .....+|.++..
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~  239 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITGGLGVQSAIVC  239 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence            57899999987 445555554 3444999999999887776643    2211 1111122111 0 0 122346666642


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..                     -...+....+.|+++|++++....
T Consensus       240 ~~---------------------~~~~~~~~~~~l~~~G~~v~~g~~  265 (348)
T 4eez_A          240 AV---------------------ARIAFEQAVASLKPMGKMVAVAVP  265 (348)
T ss_dssp             CS---------------------CHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cc---------------------CcchhheeheeecCCceEEEEecc
Confidence            11                     135677788999999998876543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.95  E-value=0.32  Score=38.52  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CC-------CCCCcee
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP-------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~~~D   69 (201)
                      |++||-.||  |.|..+..++.. |. +|+++|.+++.++.+++ +   +..  ..  .|..+ ..       ...+.+|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~-~---g~~--~~--~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          146 GETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ-I---GFD--AA--FNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             SCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCS--EE--EETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-c---CCc--EE--EecCCHHHHHHHHHHHhCCCCe
Confidence            568999997  335555555554 66 89999999888777733 2   221  11  23322 11       1124689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+..                      ...++...+.|+++|++++...
T Consensus       217 ~vi~~~g----------------------~~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          217 CYFDNVG----------------------GEFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEESSC----------------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCC----------------------hHHHHHHHHHHhcCCEEEEEec
Confidence            9886422                      1246778899999999887653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.93  E-value=1.3  Score=33.98  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC------------HHHHHHHHHHHhhcCCCceEEEEcccCCCC---
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS------------AVAVEKMQERLLLKGYKEVKVLEADMLDLP---   62 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~------------~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---   62 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+            .+.++.+...+...+ .++.++..|+.+..   
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHHHH
Confidence            356777776544   23334445576 89999987            666666665555444 47888999987632   


Q ss_pred             --C-----CCCceeEEEeccccceeeecCCCCCCCCCccHHH--------HHHHHHHHhhcccCCcEEEEEe
Q 028957           63 --F-----SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK--------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        63 --~-----~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                        +     ..+..|+++.+......    . .. ...+..+.        ...+++.+.+.++.+|.++.+.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~----~-~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPL----G-AH-LPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCC----C-TT-CCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcc----c-Cc-CCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence              0     01368999876554211    0 00 11111111        2344566777778888887654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=92.83  E-value=0.67  Score=35.65  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+...+ .++..++.|+.+..          -..+.
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            355565565544   23344445577 89999999998888877776665 36788888987631          12367


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            8999987654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.80  E-value=0.25  Score=39.22  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=57.2

Q ss_pred             CCcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeE
Q 028957            1 MTSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~   70 (201)
                      |++||-.|++  .|..+..+++. |. +|++++.+++..+.+.+.   .+..  .++  |..+..       ...+.+|+
T Consensus       150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~--~~~--~~~~~~~~~~~~~~~~~~~d~  221 (336)
T 4b7c_A          150 GETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEE---LGFD--GAI--DYKNEDLAAGLKRECPKGIDV  221 (336)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---TCCS--EEE--ETTTSCHHHHHHHHCTTCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCC--EEE--ECCCHHHHHHHHHhcCCCceE
Confidence            5789999983  36666666655 55 999999999877776332   2321  112  221111       11346899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++.+..                      ...++...+.|+++|++++...
T Consensus       222 vi~~~g----------------------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          222 FFDNVG----------------------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEESSC----------------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCC----------------------cchHHHHHHHHhhCCEEEEEee
Confidence            885321                      1367788899999999887643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.78  E-value=0.2  Score=39.90  Aligned_cols=92  Identities=16%  Similarity=0.210  Sum_probs=56.5

Q ss_pred             CCcEEEecCCC--ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEE
Q 028957            1 MTSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v   71 (201)
                      |++||-.|+|+  |..+..+++. |. +|++++.+++.++.+++.    +..  .++...-.+.     . .....+|+|
T Consensus       145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~--~~~~~~~~~~~~~~~~~~~~~g~Dvv  217 (340)
T 3gms_A          145 NDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA--YVIDTSTAPLYETVMELTNGIGADAA  217 (340)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc--EEEeCCcccHHHHHHHHhCCCCCcEE
Confidence            57899999874  6677777665 66 999999998888777653    221  1221111110     0 123479999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +....-                  .    ......+.|+++|+++.+...
T Consensus       218 id~~g~------------------~----~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          218 IDSIGG------------------P----DGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             EESSCH------------------H----HHHHHHHTEEEEEEEEECCCT
T ss_pred             EECCCC------------------h----hHHHHHHHhcCCCEEEEEeec
Confidence            863221                  1    123344789999999877543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.64  E-value=0.22  Score=39.80  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEE
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v   71 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++..+.+++.    +..  .++..+ .+.     . .....+|+|
T Consensus       160 g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~v~~~~-~~~~~~v~~~~~~~g~Dvv  231 (342)
T 4eye_A          160 GETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD--IVLPLE-EGWAKAVREATGGAGVDMV  231 (342)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEecCc-hhHHHHHHHHhCCCCceEE
Confidence            578999997 3 37777777665 55 999999998888777653    322  222222 111     0 123369999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....-                      ..++...+.|+++|++++...
T Consensus       232 id~~g~----------------------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          232 VDPIGG----------------------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EESCC------------------------CHHHHHHTEEEEEEEEEC--
T ss_pred             EECCch----------------------hHHHHHHHhhcCCCEEEEEEc
Confidence            853221                      245677889999999987653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.56  E-value=0.4  Score=37.34  Aligned_cols=107  Identities=10%  Similarity=0.078  Sum_probs=64.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+.+|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+.    .+...++.|+.+..          -..+.
T Consensus        29 gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           29 AKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG----GGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----TTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC----CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            355666676555   23444455577 89999999988877765542    25677888987632          11257


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHH-----------HHHHHHHhhcccCCcEEEEEe
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKV-----------MAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .|+++.+......     .|..+  -..++.           -.+.+.+.+.|+.+|.++.+.
T Consensus       104 iDiLVNNAG~~~~-----~~~~~--~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          104 IDVLFVNAGGGSM-----LPLGE--VTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             EEEEEECCCCCCC-----CCTTS--CCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCC-----CChhh--ccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            8999877654221     12211  112222           234556667788888877654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.55  E-value=0.62  Score=38.46  Aligned_cols=91  Identities=15%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      .+|+=+|+|.  ++..++    ..+. .|+++|.+++.++.+++.       .+.++.+|+.+..    ..-...|+|++
T Consensus         5 ~~viIiG~Gr--~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-------g~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            5 MRVIIAGFGR--FGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-------TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECCCH--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-------CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            4688888764  444443    3355 899999999998887642       4567889987632    22356788876


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...                  .......+-...+.+.|+..++....
T Consensus        75 ~~~------------------~~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           75 AID------------------DPQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             CCS------------------SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CCC------------------ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            321                  12333444555666778878776544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.19  Score=40.19  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=56.6

Q ss_pred             CCcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CC-------CCCCcee
Q 028957            1 MTSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LP-------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~~~D   69 (201)
                      |++||-.|++  .|..+..++.. |. +|++++.+++..+.+++    .+..  .++  |..+ ..       ...+.+|
T Consensus       170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~--~~~--d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          170 GHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE--VFI--DFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC--EEE--ETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc--eEE--ecCccHhHHHHHHHHhCCCCC
Confidence            5789999983  46666666554 65 89999998877766653    2321  112  3321 01       0112689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+...                     ...++...+.|+++|+++....
T Consensus       241 ~vi~~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          241 GVINVSVS---------------------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEECSSC---------------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             EEEECCCc---------------------HHHHHHHHHHHhcCCEEEEEeC
Confidence            98864221                     2467888899999999887654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.34  E-value=1.7  Score=33.15  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             CcEEEecCCCChhhHHHHhc----CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYND----GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      ++||-.||  |.++..+++.    |. +|++++.++........       .+++++.+|+.++.  ...+|+|+...
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc--cCCCCEEEECC
Confidence            57899995  7777766553    55 89999998765443332       26899999998865  45689988643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.33  E-value=0.22  Score=39.74  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C-------CCCCcee
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-------~~~~~~D   69 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.+   +..  ..+  |..+. .       ...+.+|
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~~--~~~--d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GFD--DAF--NYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CCS--EEE--ETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCc--eEE--ecCCHHHHHHHHHHHhCCCCc
Confidence            578999997 3 36666666654 65 8999999988777765322   321  112  22211 0       1124689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +++.+..                      ...++...+.|+++|++++..
T Consensus       228 ~vi~~~g----------------------~~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          228 IYFENVG----------------------GKMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEESSC----------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCC----------------------HHHHHHHHHHHhcCCEEEEEc
Confidence            9885321                      136778889999999988764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.24  E-value=0.26  Score=39.35  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=57.1

Q ss_pred             CCcEEEecCCC--ChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCC-Cce
Q 028957            1 MTSVLELGCGN--SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSN-DCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~-~~~   68 (201)
                      |++||-.|+|+  |..+..+++.  |. +|+++|.+++..+.+++.    +..  .++  |..+..       ... +.+
T Consensus       171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~~~--~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          171 TKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD--YVI--NASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC--EEe--cCCCccHHHHHHHHhcCCCc
Confidence            57899999874  5555555544  55 899999999888777542    221  112  211111       111 478


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      |+++....-                     ...++...+.|+++|+++....
T Consensus       242 d~vi~~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          242 DAVIDLNNS---------------------EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             EEEEESCCC---------------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             eEEEECCCC---------------------HHHHHHHHHHHhcCCEEEEECC
Confidence            998854221                     2467778899999999887654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=92.21  E-value=0.18  Score=40.16  Aligned_cols=59  Identities=24%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             eEEE-EcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCC-------CccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           51 VKVL-EADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQ-------PETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        51 i~~~-~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..++ ++|+...  .++.+++|+|++           ++||...       ..-.......+.++.++|+|+|.+++...
T Consensus        39 ~~l~i~gD~l~~L~~l~~~svDlI~t-----------DPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLPDDSVQLIIC-----------DPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEE-----------CCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEECCcHHHHHHhCccCCcCEEEE-----------CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            5677 9998652  255678999997           4555432       11123467888899999999999887643

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.20  E-value=0.12  Score=41.39  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~v   71 (201)
                      |++||-+|+|. |..+..+++. |..+|++++.+++.++.+++. .    .  .++  |..+..       .....+|+|
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a----~--~v~--~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A----D--RLV--NPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C----S--EEE--CTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H----H--hcc--CcCccCHHHHHHHhcCCCCCEE
Confidence            57899999864 6677777765 443899999998877666432 1    1  111  211100       012468999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....-                     ...++...+.|+++|+++....
T Consensus       236 id~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          236 LEFSGN---------------------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EECSCC---------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCC---------------------HHHHHHHHHHHhcCCEEEEEec
Confidence            853211                     2456778889999999887654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.07  E-value=0.28  Score=40.77  Aligned_cols=44  Identities=30%  Similarity=0.510  Sum_probs=35.4

Q ss_pred             CcEEEecCCCChhhHHHHhc----C--CCeEEEEECCHHHHHHHHHHHhh
Q 028957            2 TSVLELGCGNSRLSEGLYND----G--ITAITCIDLSAVAVEKMQERLLL   45 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~--~~~v~~vD~~~~~~~~~~~~~~~   45 (201)
                      -+|+|+|+|+|.+...+++.    +  ..+++.||+|+...+.-++++..
T Consensus       139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            47999999999998888653    2  23899999999888877777654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.05  E-value=0.12  Score=39.70  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             eEEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCCCc------cH----HHHHHHHHHHhhcccCCcEEEEE
Q 028957           51 VKVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPE------TV----TKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        51 i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~------~~----~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..++++|+...  .++.+++|+|++           ++||.....      ..    ......++++.++|+|+|.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~-----------DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVI-----------DPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEE-----------CCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEE-----------CCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            35677887542  244678999996           466654311      11    23567888889999999998876

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.95  E-value=0.65  Score=38.64  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=30.7

Q ss_pred             CCcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~   41 (201)
                      |++||-+|+ |. |.++..+++. |. ++++++.+++.++.+++
T Consensus       229 g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          229 GDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA  271 (456)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh
Confidence            568899987 43 7777777776 55 89999989988887765

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=91.71  E-value=1.4  Score=33.65  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEEC-CHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDL-SAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|--|++. .++..    +++.|. +|+.++. +.+..+...+.+...+ .++.++..|+.+..     +     ..
T Consensus        18 ~k~~lVTGas~-gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           18 GKVALVTGSGR-GIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             TCEEEESCTTS-HHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35667666554 44444    445576 7888775 4555666655555544 36888999987632     0     11


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......     .|...  ...++           .-.+.+.+.+.++++|.++.+..
T Consensus        95 g~id~lvnnAg~~~~-----~~~~~--~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           95 GHLDIAVSNSGVVSF-----GHLKD--VTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             SCCCEEECCCCCCCC-----CCGGG--CCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCCEEEECCCCCCC-----CCccc--CCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            367998866543211     01000  01122           22445667777888899887654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.60  E-value=1.8  Score=29.93  Aligned_cols=94  Identities=15%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECC-HHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEE
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVI   72 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~   72 (201)
                      .+|+=+|+  |..+..+++    .+. .|+++|.+ ++..+...+...    ..+.++.+|..+..    ..-...|+|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            46777776  455554443    355 89999997 555554443322    24688899976521    1234678888


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +...                  .......+....+.+.|...++....
T Consensus        77 ~~~~------------------~d~~n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           77 ALSD------------------NDADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             ECSS------------------CHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EecC------------------ChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            6321                  12334455556666667777776543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.30  E-value=1.3  Score=33.63  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             CCcEEEecCC-CChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCG-NSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G-~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      +++||-.|++ +|.++..+    ++.|. +|++++.+....+.+++.....+  ++.++..|+.+..     +     ..
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4678888875 24444444    45576 89999988655554444433332  5788899987632     0     12


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......-......+.  ....++           ...+++.+.+.++++|.++.+..
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           91 DSLDGLVHSIGFAPREAIAGDFLD--GLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCTTT--TCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccccCcccc--ccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence            468999976554211000001110  001122           22345666677777888776653

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.13  E-value=0.23  Score=44.36  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             CcEEEecCCCChhhHHHHhcC------CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC
Q 028957            2 TSVLELGCGNSRLSEGLYNDG------ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML   59 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~------~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~   59 (201)
                      .+||||.||.|+++.-+.+.|      +..+.++|+++.+++.-+.|..     ...+.+.|+.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp-----~~~~~~~di~  271 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP-----QTEVRNEKAD  271 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT-----TSEEEESCHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC-----CCceecCcHH
Confidence            379999999999998887765      4478999999999988887753     4456666653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=91.10  E-value=0.5  Score=37.61  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+  |.|..+..+++. |. +|++++.+++.++.+++.    +...  ++  |..+..        .....+|
T Consensus       167 g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~~--~~--d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          167 GDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GADE--TV--NYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCSE--EE--ETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCCE--EE--cCCcccHHHHHHHHhCCCCce
Confidence            468999998  346666666664 55 899999999888877642    2221  22  222111        1124689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++....                      ...++.+.+.|+++|+++....
T Consensus       238 ~vi~~~g----------------------~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          238 KVVDHTG----------------------ALYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEESSC----------------------SSSHHHHHHHEEEEEEEEESSC
T ss_pred             EEEECCC----------------------HHHHHHHHHhhccCCEEEEEec
Confidence            9986432                      1245667788999999887654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.05  E-value=0.38  Score=42.28  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             cEEEecCCCChhhHHHHhcC------------CC-eEEEEEC---CHHHHHHHHHH-----------HhhcC--------
Q 028957            3 SVLELGCGNSRLSEGLYNDG------------IT-AITCIDL---SAVAVEKMQER-----------LLLKG--------   47 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~------------~~-~v~~vD~---~~~~~~~~~~~-----------~~~~~--------   47 (201)
                      +|+|+|-|+|.....+.+..            .. +++.+|.   +.+.+..+...           +..+.        
T Consensus        61 ~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r  140 (689)
T 3pvc_A           61 IFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHR  140 (689)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEE
T ss_pred             EEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceE
Confidence            79999999998777665431            11 7999998   55555543221           11111        


Q ss_pred             ------CCceEEEEcccCC-CC-CC---CCceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcEE
Q 028957           48 ------YKEVKVLEADMLD-LP-FS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLF  115 (201)
Q Consensus        48 ------~~~i~~~~~d~~~-~~-~~---~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l  115 (201)
                            .-.+.+..+|+.. ++ +.   ...+|+++.....     .+-+|        +. ...++..+.++++|||++
T Consensus       141 ~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~-----p~~np--------~~w~~~~~~~l~~~~~~g~~~  207 (689)
T 3pvc_A          141 ILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA-----PAKNP--------DMWNEQLFNAMARMTRPGGTF  207 (689)
T ss_dssp             EEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC-----C--CC--------TTCSHHHHHHHHHHEEEEEEE
T ss_pred             EEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC-----CCCCh--------hhhhHHHHHHHHHHhCCCCEE
Confidence                  0135567778764 22 21   3578888853211     00000        11 257889999999999986


Q ss_pred             EE
Q 028957          116 IS  117 (201)
Q Consensus       116 ~~  117 (201)
                      ..
T Consensus       208 ~t  209 (689)
T 3pvc_A          208 ST  209 (689)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.95  E-value=1.2  Score=33.73  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             CCcEEEecC-CCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGC-GNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~-G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|+ |.|   .++..+++.|. +|++++.+.+.++...+.+...+..++.++..|+.+..     +     ..+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            456777776 454   24445556677 89999999988887777775554457899999987632     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus       101 ~id~li~~Ag~  111 (266)
T 3o38_A          101 RLDVLVNNAGL  111 (266)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            67999876553

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=90.94  E-value=0.033  Score=44.94  Aligned_cols=92  Identities=23%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCC-CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL-PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~~D~v~~~~~   76 (201)
                      |++||-+|+|. |..+..+++. |. +|++++.+++..+.+++.   .+...+  +.. +...+ .. .+.+|+|+....
T Consensus       181 g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~~v--i~~~~~~~~~~~-~~g~D~vid~~g  253 (357)
T 2cf5_A          181 GLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQD---LGADDY--VIGSDQAKMSEL-ADSLDYVIDTVP  253 (357)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTT---SCCSCE--EETTCHHHHHHS-TTTEEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH---cCCcee--eccccHHHHHHh-cCCCCEEEECCC
Confidence            56899999865 6666666665 66 899999988776666522   232221  111 10001 11 136899985322


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      -.                     ..++...+.|+++|+++....
T Consensus       254 ~~---------------------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          254 VH---------------------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             SC---------------------CCSHHHHTTEEEEEEEEECSC
T ss_pred             Ch---------------------HHHHHHHHHhccCCEEEEeCC
Confidence            10                     124556788999999887643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=90.92  E-value=0.49  Score=37.73  Aligned_cols=88  Identities=16%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             CCcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCceeEE
Q 028957            1 MTSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~v   71 (201)
                      |++||-.|+ |. |..+..+++. |. +|+++ .+++.++.+++.    +..   .+. +-.+..      .....+|+|
T Consensus       151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga~---~i~-~~~~~~~~~~~~~~~~g~D~v  220 (343)
T 3gaz_A          151 GQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GAT---PID-ASREPEDYAAEHTAGQGFDLV  220 (343)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TSE---EEE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CCC---Eec-cCCCHHHHHHHHhcCCCceEE
Confidence            578999994 43 7777777765 55 89999 788877766542    322   122 111110      123468998


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....                      ...+....+.|+++|+++.+..
T Consensus       221 id~~g----------------------~~~~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          221 YDTLG----------------------GPVLDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             EESSC----------------------THHHHHHHHHEEEEEEEEESCC
T ss_pred             EECCC----------------------cHHHHHHHHHHhcCCeEEEEcc
Confidence            85321                      1356777889999999887643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=90.90  E-value=0.77  Score=34.94  Aligned_cols=111  Identities=9%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEE-ECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCI-DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++.|   .++..+++.|. +|+.+ +.+.+..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            456777776554   23344445577 77777 666666666665555444 36788999987632     0     013


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..|+++.+......    ..|...  ...++           .-.+.+.+.+.++++|.++.+.
T Consensus        86 ~id~lv~nAg~~~~----~~~~~~--~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           86 EIHGLVHVAGGLIA----RKTIAE--MDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             SEEEEEECCCCCCC----CCCTTT--CCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCccCC----CCChhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            68998876542111    011111  01122           2344556667777788877654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.87  E-value=0.057  Score=43.72  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCC-CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL-PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~~D~v~~~~~   76 (201)
                      |++||-+|+|. |..+..+++. |. +|++++.+++..+.+.+.   .+..  .++.. +...+ .. .+.+|+|+....
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~--~v~~~~~~~~~~~~-~~~~D~vid~~g  260 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKN---FGAD--SFLVSRDQEQMQAA-AGTLDGIIDTVS  260 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHT---SCCS--EEEETTCHHHHHHT-TTCEEEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh---cCCc--eEEeccCHHHHHHh-hCCCCEEEECCC
Confidence            46888999765 6666666655 55 899999988777666532   2322  12211 10001 11 136899985422


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                     ..++...+.|+++|+++....
T Consensus       261 ~~---------------------~~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          261 AV---------------------HPLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             SC---------------------CCSHHHHHHEEEEEEEEECCC
T ss_pred             cH---------------------HHHHHHHHHHhcCCEEEEEcc
Confidence            11                     123456678899999887654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.83  E-value=1.5  Score=34.04  Aligned_cols=114  Identities=11%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             CCcEEEecCCC-Ch----hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCGN-SR----LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G~-G~----~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|-.|+++ ..    ++..+++.|. +|++++.++...+.+.+.....+  .+.++..|+.+..     +     ..
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46788888754 23    4444555677 89999998765555554444333  4678889987632     1     01


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +..|+++.+......- ....|...  ...++           ...+.+.+.+.++.+|.++.+..
T Consensus       107 g~iD~lVnnAG~~~~~-~~~~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKN-ELKGRYVD--TSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             SCCSEEEECCCCCCHH-HHTSCGGG--CCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             CCCCEEEECCCcCCcc-cccCChhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            4689998765432100 00000000  01122           23445666777778899887653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.83  E-value=1.1  Score=35.71  Aligned_cols=97  Identities=13%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C----------CceEEEEcccCCC
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y----------KEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~----------~~i~~~~~d~~~~   61 (201)
                      .+|--+|+|+ | .++..++..|. .|+..|++++.++.+.+++...       + .          .++.+ ..|+.+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~a   84 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAEA   84 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHhH
Confidence            4688899987 3 45566677787 8999999999888776654321       1 0          01222 1222110


Q ss_pred             CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                         -...|+|+-.     +           +++.+-.+++++++-++++|+..+.-.+
T Consensus        85 ---~~~ad~ViEa-----v-----------~E~l~iK~~lf~~l~~~~~~~aIlaSNT  123 (319)
T 3ado_A           85 ---VEGVVHIQEC-----V-----------PENLDLKRKIFAQLDSIVDDRVVLSSSS  123 (319)
T ss_dssp             ---TTTEEEEEEC-----C-----------CSCHHHHHHHHHHHHTTCCSSSEEEECC
T ss_pred             ---hccCcEEeec-----c-----------ccHHHHHHHHHHHHHHHhhhcceeehhh
Confidence               1345777742     1           1566778899999999999987765444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.81  E-value=2  Score=32.88  Aligned_cols=111  Identities=16%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++.|   .++..+++.|. +|+.++.+ .+..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG-GRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356777776544   23344455576 78888654 455665555555444 36788999987632     0     113


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..|+++.+......     .|...  ...++           ...+++.+.+.++++|.++.+..
T Consensus       109 ~iD~lvnnAg~~~~-----~~~~~--~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          109 GLDILVNSAGIWHS-----APLEE--TTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             CCCEEEECCCCCCC-----CCGGG--CCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCcEEEECCCCCCC-----CChhh--CCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            68998876543211     11100  01122           22456666777888898887643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.70  E-value=1.1  Score=34.29  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+.+|--|++.|-   .+..+++.|. +|+.+|.+++.++.+.+.+...+ .++.+++.|+.+..          -.-+.
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4566666765552   3344455677 89999999999988888777665 37888999987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        85 iDiLVNNAGi   94 (254)
T 4fn4_A           85 IDVLCNNAGI   94 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            8999977653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.64  E-value=0.92  Score=35.69  Aligned_cols=89  Identities=20%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             CCcEEEec-CCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccc
Q 028957            1 MTSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG-~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~   76 (201)
                      |++||-.| +|. |..+..+++. |. +|++++ +++..+.+++    .+.+.  ++..+-.+ ..-....+|+|+....
T Consensus       153 g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~g  224 (321)
T 3tqh_A          153 GDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAEQ--CINYHEEDFLLAISTPVDAVIDLVG  224 (321)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCSE--EEETTTSCHHHHCCSCEEEEEESSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCCE--EEeCCCcchhhhhccCCCEEEECCC
Confidence            56888886 554 7777777776 55 888887 4544555543    33322  22211111 1111146899885321


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                            ...+....+.|+++|+++...
T Consensus       225 ----------------------~~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          225 ----------------------GDVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             ----------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred             ----------------------cHHHHHHHHhccCCCEEEEeC
Confidence                                  112377889999999988764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.39  E-value=1.7  Score=32.03  Aligned_cols=90  Identities=13%  Similarity=0.068  Sum_probs=54.2

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++|+=+|+|  .++..++    +.+. .|+++|.+++.++...+..      .+.++.+|+.+..    ..-..+|+|++
T Consensus         1 M~iiIiG~G--~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~------~~~~i~gd~~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            1 MKVIIIGGE--TTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL------KATIIHGDGSHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CCEEEECCH--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS------SSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc------CCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence            367777765  4444443    3455 8999999998877654331      4578889987631    12346788886


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ...                  .......+....+.+.+...++..
T Consensus        72 ~~~------------------~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           72 LTP------------------RDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             CCS------------------CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             ecC------------------CcHHHHHHHHHHHHHcCCCeEEEE
Confidence            321                  122334455555555666666654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.30  E-value=2.3  Score=32.90  Aligned_cols=110  Identities=13%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHH-HHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAV-AVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      |+++|--|++. .++..    +++.|. +|+.++.+.. ..+...+.....+ .++.++..|+.+..     +     ..
T Consensus        47 gk~vlVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           47 GKNVLITGGDS-GIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35677777654 44444    445576 8999998754 3444444444433 37888999987632     0     11


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +..|+++.+......    ..+...  ...++           ...+++.+.+.++.+|.++.+.
T Consensus       124 g~iD~lvnnAg~~~~----~~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          124 GSLNILVNNVAQQYP----QQGLEY--ITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             SSCCEEEECCCCCCC----CSSGGG--CCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CCCCEEEECCCCcCC----CCCccc--CCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            367998876433110    000000  01122           2345666777788889887664

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.16  E-value=0.68  Score=37.09  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             CCcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|++  .|..+..+++. |. +|++++.+++..+.+++    .+..  .++  |..+..        .....+|
T Consensus       171 g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~--d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          171 GESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH--EVF--NHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEE--ETTSTTHHHHHHHHHCTTCEE
T ss_pred             cCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC--EEE--eCCCchHHHHHHHHcCCCCcE
Confidence            4688999972  35566556554 55 89999999887776543    2321  112  222111        1123689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+..                      ...+....+.|+++|+++....
T Consensus       242 ~vi~~~G----------------------~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          242 IIIEMLA----------------------NVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEESCH----------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCC----------------------hHHHHHHHHhccCCCEEEEEec
Confidence            9985321                      1246677899999999887653

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.09  E-value=0.59  Score=37.41  Aligned_cols=89  Identities=19%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeE
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~   70 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.    +..  .++  |..+..       .....+|+
T Consensus       168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~--~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          168 GESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK--RGI--NYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEE--eCCchHHHHHHHHHhCCCceE
Confidence            467888853 3 36666666665 55 899999999988877653    221  122  211111       11346899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++....-                      ..++...+.|+++|+++....
T Consensus       239 vid~~g~----------------------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          239 ILDMIGA----------------------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEESCCG----------------------GGHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCCH----------------------HHHHHHHHHhccCCEEEEEEe
Confidence            9864221                      145667889999999887654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=90.03  E-value=0.77  Score=36.91  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             CCcEEEec-CC-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEE
Q 028957            1 MTSVLELG-CG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG-~G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~   72 (201)
                      |++||-.| +| .|..+..+++. |. +|++++.+++.++.+++    .+..  .++..+-.++     ......+|+|+
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~g~D~vi  236 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYPEGVDVVY  236 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcCCCCCEEE
Confidence            56889999 34 47777777765 55 89999999888877764    2322  1221111110     01124689988


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ....                      ...++.+.+.|+++|+++....
T Consensus       237 d~~g----------------------~~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          237 ESVG----------------------GAMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             ECSC----------------------THHHHHHHHHEEEEEEEEECCC
T ss_pred             ECCC----------------------HHHHHHHHHHHhcCCEEEEEeC
Confidence            5321                      1366778899999999887643

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=89.57  E-value=3.6  Score=31.77  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEE-CCHHHHHHHHHHHh-hcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCID-LSAVAVEKMQERLL-LKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD-~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~   61 (201)
                      +++|--|+ +|.++..++    +.|. +|++++ .+++.++.+.+.+. ..+ .++.++..|+.+.
T Consensus        10 k~~lVTGa-s~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~   72 (291)
T 1e7w_A           10 PVALVTGA-AKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNV   72 (291)
T ss_dssp             CEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSS
T ss_pred             CEEEEECC-CchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCc
Confidence            45665555 455555544    4566 899999 88887776666554 223 3688899998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=89.25  E-value=1.6  Score=36.13  Aligned_cols=40  Identities=18%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             CCcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~   41 (201)
                      |++||-.|+ |. |..+..+++. |. ++++++.+++.++.+++
T Consensus       221 g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          221 GDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            578998987 43 6677777665 54 89999999888877754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.23  E-value=1.7  Score=33.70  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=61.8

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECC--HHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----C
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~   64 (201)
                      ++++|--|++ |.++..+    ++.|. +|+.++.+  ....+...+.....+ .++.++..|+.+..     +     .
T Consensus        49 ~k~vlVTGas-~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           49 DRKALVTGGD-SGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3567777755 4444444    44576 88888876  344555554444443 36788888887632     0     0


Q ss_pred             CCceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .+..|+++.+.......    .+...  ...++           ...+++.+.+.++++|.++.+..
T Consensus       126 ~g~iD~lv~nAg~~~~~----~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAI----PEIKD--LTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HTCCCEEEECCCCCCCC----SSGGG--CCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCcCCC----CCccc--CCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            14689988765432110    00000  01122           23456667778888899887643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.12  E-value=0.71  Score=32.16  Aligned_cols=67  Identities=15%  Similarity=0.220  Sum_probs=37.6

Q ss_pred             CCcEEEecCCC-Chhh-HHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLS-EGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~-~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      +++|+-+|+|. |... ..+...+. +|+++|.+++.++.+++   .   ....++.+|..+..    .....+|+|+..
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~---~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---E---FSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---T---CCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---c---CCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            36788888765 3322 22333465 89999998865543321   1   13456666654311    112468988863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.07  E-value=0.86  Score=35.95  Aligned_cols=89  Identities=18%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             cEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-cc--CCC-CCCCCceeEEEecc
Q 028957            3 SVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DM--LDL-PFSNDCFDVVIEKA   75 (201)
Q Consensus         3 ~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~--~~~-~~~~~~~D~v~~~~   75 (201)
                      +||-.|+ |. |..+..+++. |. +|++++.+++.++.+++.    +...  ++.. +.  ... ......+|+|+...
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~--v~~~~~~~~~~~~~~~~~~~d~vid~~  225 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASE--VISREDVYDGTLKALSKQQWQGAVDPV  225 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSE--EEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCcE--EEECCCchHHHHHHhhcCCccEEEECC
Confidence            7899997 43 6677777665 66 799999987777777542    3222  1211 11  111 12234689988532


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                    .  ..+....+.|+++|+++....
T Consensus       226 g--------------------~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          226 G--------------------G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             C--------------------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             c--------------------H--HHHHHHHHhhcCCCEEEEEec
Confidence            1                    1  257778899999999887654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.92  E-value=0.75  Score=36.25  Aligned_cols=89  Identities=15%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+  |.|..+..++.. |. +|++++.+++..+.+++.    +..  ..+  |..+..        .....+|
T Consensus       141 g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~--~~~--~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          141 DEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--QVI--NYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC--EEE--ECCCccHHHHHHHHhCCCCce
Confidence            467888884  335555555554 66 899999998888777652    221  112  222111        1123689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+..                      ...++.+.+.|+++|+++....
T Consensus       212 ~vi~~~g----------------------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          212 VVYDSVG----------------------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEECSC----------------------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCc----------------------hHHHHHHHHHhcCCCEEEEEec
Confidence            9986432                      1356777889999999887654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=88.89  E-value=0.95  Score=36.20  Aligned_cols=89  Identities=12%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+  |.|..+..++.. |. +|++++.+++.++.+++.    +..  ..+  |..+..        .....+|
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~~~--~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA--AGF--NYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc--EEE--ecCChHHHHHHHHHhcCCCce
Confidence            467888884  235555555554 55 899999999888777432    221  112  221111        1224689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++....-                      ..++...+.|+++|+++....
T Consensus       234 ~vi~~~G~----------------------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          234 LILDCIGG----------------------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEESSCG----------------------GGHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCc----------------------hHHHHHHHhccCCCEEEEEec
Confidence            99864321                      135666788999999887654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.79  E-value=4.7  Score=31.09  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE--------cccCCC-CCCC--Cce
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE--------ADMLDL-PFSN--DCF   68 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~--------~d~~~~-~~~~--~~~   68 (201)
                      ++|.=+|+|. | .++..+++.|. +|+++|.+++.++.+.+.    +   +....        .++.+. ....  ...
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G---LIADFNGEEVVANLPIFSPEEIDHQNEQV   75 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C---EEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C---EEEEeCCCeeEecceeecchhhcccCCCC
Confidence            4688888875 2 33444555566 899999998877766543    1   11111        000010 1111  257


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |+|+..-                  .......+++.+...++++..++...
T Consensus        76 d~vi~~v------------------~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           76 DLIIALT------------------KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             SEEEECS------------------CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CEEEEEe------------------ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            9888632                  12356778888888888877665443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.76  E-value=1.7  Score=33.09  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++ |.++..+    ++.|. +|+.++.+++.++.+.+.+...+..++.++..|+.+..     +     ..+
T Consensus        10 ~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A           10 GRSVVVTGGT-KGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3556666654 5454444    44576 89999999988887777766554347889999987632     0     113


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999876543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.76  E-value=2.5  Score=32.03  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      ++++|--|++.|   .++..+++.|. +|+.++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            356777777655   23444555677 89999999988888777766554 37888999987632     0     1246


Q ss_pred             eeEEEeccc
Q 028957           68 FDVVIEKAT   76 (201)
Q Consensus        68 ~D~v~~~~~   76 (201)
                      .|+++.+..
T Consensus        89 id~lv~nAg   97 (264)
T 3ucx_A           89 VDVVINNAF   97 (264)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            899887653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.76  E-value=1.6  Score=33.39  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEE-CCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCID-LSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD-~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++.|   .++..+++.|. +|+.++ .+.+..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG-GKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356676666544   23334445577 777764 45556666555555444 36788899987632     0     114


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..|+++.+......     .|...  ...++           ...+++.+.+.++++|.++.+..
T Consensus       105 ~iD~lvnnAG~~~~-----~~~~~--~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          105 GVDVLVNNAGIMPL-----TTIAE--TGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             CEEEEEECCCCCCC-----CCGGG--CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCEEEECCCCCCC-----CChhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            68999876554211     11100  01111           22345566677777888887653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=88.72  E-value=0.6  Score=40.88  Aligned_cols=102  Identities=11%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             cEEEecCCCChhhHHHHhc------------CCC-eEEEEEC---CHHHHHHHHHH-----------HhhcC--C-----
Q 028957            3 SVLELGCGNSRLSEGLYND------------GIT-AITCIDL---SAVAVEKMQER-----------LLLKG--Y-----   48 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~------------~~~-~v~~vD~---~~~~~~~~~~~-----------~~~~~--~-----   48 (201)
                      +|+|+|-|+|.......+.            ... +++++|.   +.+.+..+...           ...+.  +     
T Consensus        69 ~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (676)
T 3ps9_A           69 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHR  148 (676)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEE
T ss_pred             EEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceE
Confidence            7999999999876665443            112 7999998   77777644331           11111  1     


Q ss_pred             -------CceEEEEcccCC-CC-CC---CCceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcEE
Q 028957           49 -------KEVKVLEADMLD-LP-FS---NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLF  115 (201)
Q Consensus        49 -------~~i~~~~~d~~~-~~-~~---~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l  115 (201)
                             -.+.+..+|+.+ ++ +.   ...+|+++.....     ..        .+.+. ...++..+.+.++|||++
T Consensus       149 ~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~-----p~--------~np~~w~~~~~~~l~~~~~~g~~~  215 (676)
T 3ps9_A          149 LLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA-----PA--------KNPDMWTQNLFNAMARLARPGGTL  215 (676)
T ss_dssp             EEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC-----GG--------GCGGGSCHHHHHHHHHHEEEEEEE
T ss_pred             EEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC-----Cc--------CChhhhhHHHHHHHHHHhCCCCEE
Confidence                   123456666654 11 11   3568888843211     00        11111 367899999999999997


Q ss_pred             EE
Q 028957          116 IS  117 (201)
Q Consensus       116 ~~  117 (201)
                      ..
T Consensus       216 ~t  217 (676)
T 3ps9_A          216 AT  217 (676)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=88.59  E-value=3.9  Score=27.19  Aligned_cols=64  Identities=20%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++|+=+|+|  .++..++    +.+. +|+++|.+++.++.+.+..      .+.++.+|..+..    .....+|+|+.
T Consensus         5 m~i~IiG~G--~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~------~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc------CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            567888775  4444443    3455 8999999988766554321      3456667654321    11246798886


Q ss_pred             c
Q 028957           74 K   74 (201)
Q Consensus        74 ~   74 (201)
                      .
T Consensus        76 ~   76 (140)
T 1lss_A           76 V   76 (140)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=88.33  E-value=1.2  Score=35.23  Aligned_cols=89  Identities=15%  Similarity=0.157  Sum_probs=55.6

Q ss_pred             CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+  |.|..+..++.. |. +|++++.+++.++.+++.    +..  ..+  |..+..        .....+|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~--~~~--d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH--HTI--NYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEE--ECCCHHHHHHHHHHhCCCCCe
Confidence            467888885  346666655554 65 999999998887777542    221  112  222111        1123689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +++.+..-                      ..++...+.|+++|+++....
T Consensus       217 ~vi~~~g~----------------------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          217 VVYDSIGK----------------------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             EEEECSCT----------------------TTHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCcH----------------------HHHHHHHHhhccCCEEEEEec
Confidence            98854221                      346777889999999887654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.25  E-value=1.4  Score=35.30  Aligned_cols=91  Identities=11%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHH---HHHHHHHHHhhcCCCceEEEEc------ccCCCCCCCCce
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAV---AVEKMQERLLLKGYKEVKVLEA------DMLDLPFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~---~~~~~~~~~~~~~~~~i~~~~~------d~~~~~~~~~~~   68 (201)
                      |++||-.|+ | .|.++..+++. |...+..++.++.   ..+.++    ..+...  ++..      ++....-..+.+
T Consensus       168 g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~~~~~~  241 (357)
T 1zsy_A          168 GDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAEH--VITEEELRRPEMKNFFKDMPQP  241 (357)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCSE--EEEHHHHHSGGGGGTTSSSCCC
T ss_pred             CCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCcE--EEecCcchHHHHHHHHhCCCCc
Confidence            578999997 4 37777788775 6534445554432   233333    334322  2221      111111111148


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |+|+-...                  ..    ......+.|+++|+++...
T Consensus       242 Dvvid~~g------------------~~----~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          242 RLALNCVG------------------GK----SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SEEEESSC------------------HH----HHHHHHTTSCTTCEEEECC
T ss_pred             eEEEECCC------------------cH----HHHHHHHhhCCCCEEEEEe
Confidence            99885321                  11    1235678999999988763

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=88.22  E-value=2.1  Score=32.12  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=49.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      ++++|-.|++.|   .++..+++.|. +|++++.+++..+.+.+.+...+ .++.++..|+.+..     +     ..+.
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356777776543   23444445576 89999999988887777765544 36788999987632     0     0136


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        87 id~li~~Ag~   96 (253)
T 3qiv_A           87 IDYLVNNAAI   96 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            8999876543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.10  E-value=1.5  Score=35.31  Aligned_cols=90  Identities=12%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             CCcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEE
Q 028957            1 MTSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~   72 (201)
                      |++||-.|++  .|..+..+++. |. +|+++. +++..+.+++    .+..  .++...-.++     ....+.+|+|+
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t~g~~d~v~  236 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE--EVFDYRAPNLAQTIRTYTKNNLRYAL  236 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS--EEEETTSTTHHHHHHHHTTTCCCEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc--EEEECCCchHHHHHHHHccCCccEEE
Confidence            4678999983  47788888776 55 788885 7776666653    3322  2222111110     11224589998


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc-cCCcEEEEEe
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS  119 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~  119 (201)
                      -...-                     ...++...+.| +++|+++.+.
T Consensus       237 d~~g~---------------------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          237 DCITN---------------------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             ESSCS---------------------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ECCCc---------------------hHHHHHHHHHhhcCCCEEEEEe
Confidence            53211                     24566677788 6999988764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=88.02  E-value=1.2  Score=35.53  Aligned_cols=90  Identities=10%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             CcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeEE
Q 028957            2 TSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~v   71 (201)
                      ++||-.|++  .|..+..++.. |..+|++++.+++..+.+++.+   +..  ..+  |..+..       ...+.+|++
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~~--~~~--d~~~~~~~~~~~~~~~~~~d~v  234 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GFD--AAI--NYKKDNVAEQLRESCPAGVDVY  234 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CCS--EEE--ETTTSCHHHHHHHHCTTCEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CCc--eEE--ecCchHHHHHHHHhcCCCCCEE
Confidence            788999873  35566666554 5448999999987777665422   321  112  222111       111268998


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +.+..                      ...++...+.|+++|+++++..
T Consensus       235 i~~~G----------------------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          235 FDNVG----------------------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EESCC----------------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EECCC----------------------HHHHHHHHHHhccCcEEEEECC
Confidence            85321                      1467788899999999887643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=87.93  E-value=0.21  Score=39.56  Aligned_cols=91  Identities=16%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             cEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCC-CCCCCceeEEEecccc
Q 028957            3 SVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDL-PFSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~-~~~~~~~D~v~~~~~l   77 (201)
                      +||-.|+ | .|..+..+++. |. +|++++.+++.++.+++    .+...+ .....+.... ....+.+|+|+....-
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            7899997 3 37777777765 55 89999998877777754    232221 1111110001 1223468988853210


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                            ..++...+.|+++|++++...
T Consensus       227 ----------------------~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          227 ----------------------RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             ----------------------TTHHHHHHTEEEEEEEEECSC
T ss_pred             ----------------------HHHHHHHHhhccCCEEEEEee
Confidence                                  245677889999999887643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.87  E-value=2.3  Score=33.11  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      |++||-.|++.|   .++..+++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG-FDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            356777776644   23344445576 89999999998888877776554 37888999987632     0     0136


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       109 id~lvnnAg~  118 (301)
T 3tjr_A          109 VDVVFSNAGI  118 (301)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            8998876543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=87.83  E-value=6.4  Score=32.79  Aligned_cols=94  Identities=14%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-------cC------C--CceEEEEcccCCCCCC
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG------Y--KEVKVLEADMLDLPFS   64 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-------~~------~--~~i~~~~~d~~~~~~~   64 (201)
                      ++|.-+|+|. | .++..++..|. .|+++|.+++.++.+.+....       .+      .  ....+ ..|...    
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~----  111 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE----  111 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG----
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH----
Confidence            3578889886 3 35555566676 899999999888776653211       00      0  01222 444322    


Q ss_pred             CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      -...|+|+..-.                +...-...+++++...++++..++.
T Consensus       112 ~~~aDlVIeaVp----------------e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          112 LSTVDLVVEAVF----------------EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             GTTCSEEEECCC----------------SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HCCCCEEEEcCC----------------CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            135699885321                2223456788888888888766553

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.73  E-value=0.63  Score=38.98  Aligned_cols=63  Identities=16%  Similarity=0.322  Sum_probs=43.5

Q ss_pred             CcEEEecCCCChhhHHHHhc----CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYND----GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++|+=+|||  ..+..+++.    +. .|+.+|.+++.++.+.+.+      .+..+.+|+.+..    ..-...|++++
T Consensus         4 M~iiI~G~G--~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIIILGAG--QVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEEECCS--HHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            567777775  455555543    33 8999999999998877653      5688999987632    22345788875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=87.68  E-value=2.7  Score=34.22  Aligned_cols=93  Identities=23%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+||.++.+.|.++..++..  ..+..+.-+......    +..++++. ..  .  .........||+|+...      
T Consensus        47 ~~~l~~n~~~g~~~~~~~~~--~~~~~~~~~~~~~~~----l~~~~~~~-~~--~--~~~~~~~~~~d~v~~~~------  109 (381)
T 3dmg_A           47 ERALDLNPGVGWGSLPLEGR--MAVERLETSRAAFRC----LTASGLQA-RL--A--LPWEAAAGAYDLVVLAL------  109 (381)
T ss_dssp             SEEEESSCTTSTTTGGGBTT--BEEEEEECBHHHHHH----HHHTTCCC-EE--C--CGGGSCTTCEEEEEEEC------
T ss_pred             CcEEEecCCCCccccccCCC--CceEEEeCcHHHHHH----HHHcCCCc-cc--c--CCccCCcCCCCEEEEEC------
Confidence            57999999999887766422  267777655544433    44445432 11  1  11222356799998521      


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                              ++.+........|.++.+.|+|||.+++..
T Consensus       110 --------Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g  139 (381)
T 3dmg_A          110 --------PAGRGTAYVQASLVAAARALRMGGRLYLAG  139 (381)
T ss_dssp             --------CGGGCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CcchhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence                    111222457889999999999999998765

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.65  E-value=2.4  Score=32.18  Aligned_cols=110  Identities=13%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             CCcEEEecCCCChhhHHHHh----cCCCeEEEEECC---HHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----
Q 028957            1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLS---AVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~---~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----   63 (201)
                      ++++|--|++ |.++..+++    .|. +|+.++.+   .+.++.+.+.+...+ .++.++..|+.+..     +     
T Consensus        11 ~k~vlVTGas-~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           11 NKVIVIAGGI-KNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             TCEEEEETCS-SHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3567766655 445554444    465 88888754   445555555554443 36888999987632     1     


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEec
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..+..|+++.+......     .|...  ...++           .-.+.+.+.+.|+++|.++.+..
T Consensus        88 ~~g~iD~lvnnAg~~~~-----~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLK-----KPIVE--TSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHCSEEEEEECCCCCCS-----SCGGG--CCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCC-----CCccc--CCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            11468998876543211     11100  01122           22345556666777888877643

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=87.33  E-value=5.9  Score=35.26  Aligned_cols=97  Identities=15%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-----------C----CCceEEEEcccCCCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-----------G----YKEVKVLEADMLDLPFS   64 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-----------~----~~~i~~~~~d~~~~~~~   64 (201)
                      ++|--+|+|+  +.++..++..|. .|+..|++++.++.+++.....           .    ..++ ....|...+   
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l---  391 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTKEL---  391 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCE-EEESCGGGG---
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhh-cccCcHHHH---
Confidence            4677889987  345556666777 9999999999888777654221           0    1111 122222222   


Q ss_pred             CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                       ...|+|+-.     +           +++.+-.+++++++-++++|+..+.-.+.
T Consensus       392 -~~aDlVIEA-----V-----------~E~l~iK~~vf~~le~~~~~~aIlASNTS  430 (742)
T 3zwc_A          392 -STVDLVVEA-----V-----------FEDMNLKKKVFAELSALCKPGAFLCTNTS  430 (742)
T ss_dssp             -GSCSEEEEC-----C-----------CSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             -hhCCEEEEe-----c-----------cccHHHHHHHHHHHhhcCCCCceEEecCC
Confidence             346888842     2           15667788999999999999877664443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=87.17  E-value=1.5  Score=33.23  Aligned_cols=75  Identities=11%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C----CCCce
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F----SNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~~   68 (201)
                      ++++|-.|++.|   .++..+++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +    ..+..
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            356777776554   23334445577 89999999888877777666554 37889999987632     0    01468


Q ss_pred             eEEEecccc
Q 028957           69 DVVIEKATM   77 (201)
Q Consensus        69 D~v~~~~~l   77 (201)
                      |+++.+...
T Consensus        85 d~lv~nAg~   93 (252)
T 3h7a_A           85 EVTIFNVGA   93 (252)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEECCCc
Confidence            998876553

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.03  E-value=2.3  Score=32.18  Aligned_cols=73  Identities=11%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      ++||-.|++ |.++..+    ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        30 k~vlITGas-~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           30 QVAVVTGAS-RGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             CEEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            566666654 5555444    44566 89999999988887777766554 36888999987632     0     1136


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            8998876543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.88  E-value=3.5  Score=32.44  Aligned_cols=90  Identities=17%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      ++|.=+|+|.  +.++..+.+.|.. +|+++|.+++.++.+.+    .+.  +.....|....  .-...|+|+..-.  
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~--~~~~~~~~~~~--~~~~aDvVilavp--  103 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKV--EDFSPDFVMLSSP--  103 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCTTGG--GGGCCSEEEECSC--
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCC--cchhcCCHHHH--hhccCCEEEEeCC--
Confidence            4677788775  3445555556654 89999999988776653    221  11122232220  1235699885321  


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                                      ......+++++...++++..++-
T Consensus       104 ----------------~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          104 ----------------VRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ----------------GGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ----------------HHHHHHHHHHHhhccCCCcEEEE
Confidence                            13456788889888988776553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=86.87  E-value=2.3  Score=32.67  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~   66 (201)
                      +++||-.|+ +|.++..++    +.|. +|++++.+++.++...+.+...+..++.++..|+.+..     +.     .+
T Consensus        28 ~k~vlITGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           28 GKKVIVTGA-SKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TCEEEESSC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            356776665 455555444    4566 89999999888777665554444346888999987631     00     13


Q ss_pred             ceeEEEec
Q 028957           67 CFDVVIEK   74 (201)
Q Consensus        67 ~~D~v~~~   74 (201)
                      ..|+++.+
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            68998865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.61  E-value=0.36  Score=39.14  Aligned_cols=100  Identities=17%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|+-+|+|. |......+. .|. +|+++|.+++.++.+.+.+   +. .+.....+..++.-.-..+|+|+......
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GG-RVITLTATEANIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT-SEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cc-eEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence            46788899853 333333332 366 9999999998777665432   21 22221111111110013579988643221


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..               ....-+.+...+.+++||.++.+..
T Consensus       241 ~~---------------~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          241 GA---------------KAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             --------------------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             cc---------------ccchhHHHHHHHhhcCCCEEEEEec
Confidence            00               0001124556777899998776543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=86.41  E-value=3.4  Score=31.32  Aligned_cols=76  Identities=14%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-cCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-KGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++.|   .++..+++.|. +|+.++.+++.++.+.+.+.. .+..++.++..|+.+..     +     ..+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            356777776554   23344445577 899999999888777766654 33335888999987632     0     114


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        87 ~id~lvnnAg~   97 (265)
T 3lf2_A           87 CASILVNNAGQ   97 (265)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67998876554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=86.35  E-value=2.6  Score=31.85  Aligned_cols=74  Identities=15%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++ |.++..+    ++.|. +|+.++.+++..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        12 ~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           12 DAVAIVTGAA-AGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TCEEEECSCS-SHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3556666654 4444444    44577 89999999988877777666544 47888999987632     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999876554

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=86.33  E-value=0.66  Score=38.21  Aligned_cols=43  Identities=14%  Similarity=-0.070  Sum_probs=36.6

Q ss_pred             cEEEecCCCChhhHHHHhcCC--Ce----EEEEECCHHHHHHHHHHHhh
Q 028957            3 SVLELGCGNSRLSEGLYNDGI--TA----ITCIDLSAVAVEKMQERLLL   45 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~--~~----v~~vD~~~~~~~~~~~~~~~   45 (201)
                      +|+|+.||.|+++..+.+.|.  .-    |.++|+++.+++.-+.+...
T Consensus        12 rvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           12 KVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             eEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            799999999999999988763  34    88999999999888887754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=86.31  E-value=2.6  Score=32.18  Aligned_cols=74  Identities=18%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++..+    ++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus         4 ~k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            4 DKVILITGASG-GIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TCEEEESSTTS-HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCcc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35666666554 444444    44576 89999999988887777766554 36788888987632     0     114


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        81 ~iD~lVnnAG~   91 (264)
T 3tfo_A           81 RIDVLVNNAGV   91 (264)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.26  E-value=5  Score=30.68  Aligned_cols=109  Identities=12%  Similarity=0.153  Sum_probs=58.4

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHH-HHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CC
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAV-AVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~   66 (201)
                      +++|-.|+ +|.++..++    +.|. +|++++.+.. ..+.+.+.+...+ .++.++..|+.+..     +.     .+
T Consensus        30 k~vlVTGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           30 KVALVTGA-GRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             CEEEETTT-TSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45665555 455555554    4466 8999988754 3444444444333 36788888886532     00     13


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHH-----------HHHHHHHhhcccCCcEEEEEec
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKV-----------MAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..|+++.+......     .|...  ...++.           ..+++.+.+.|+.+|.++.+..
T Consensus       107 ~iD~lv~~Ag~~~~-----~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          107 KLDIVCSNSGVVSF-----GHVKD--VTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             CCCEEEECCCCCCC-----CCGGG--CCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCEEEECCCcCCC-----CCccc--CCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            67998876543211     00000  011222           2344566666777788877643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.25  E-value=3.1  Score=31.58  Aligned_cols=76  Identities=13%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             CCcEEEecCCC--C---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGN--S---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~--G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+++|--|+++  |   ..+..+++.|. +|+.++.+++.++.+.+.+...+-.++.+++.|+.+..          -..
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            56788888643  3   24455566687 89999999888888877776655457888999987632          112


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+..+
T Consensus        85 G~iD~lvnnAg~   96 (256)
T 4fs3_A           85 GNIDGVYHSIAF   96 (256)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            578988876543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.89  E-value=3.3  Score=31.74  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             CCcEEEecCCCChhhH----HHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSE----GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~----~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++.    .+++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus        24 ~k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           24 PQTAFVTGVSS-GIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG-HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             -CEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35677777554 4444    4445576 89999999988887777666544 36888999987632     0     113


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            67998876543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=85.82  E-value=2.4  Score=32.01  Aligned_cols=73  Identities=14%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus         6 ~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            6 EKVVIITGGS-SGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3556666654 4444444    44576 89999999988888777665443 36888999987632     0     013


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        83 ~id~lv~nAg   92 (257)
T 3imf_A           83 RIDILINNAA   92 (257)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6799887654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=85.71  E-value=3.4  Score=30.82  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      ++++|-.|++ |.++..    +++.|. +|++++.+++..+...+.+...+ .++.++..|+.+..          -..+
T Consensus         5 ~k~vlITGas-~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            5 EKVALVTGAS-RGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3566666654 444444    445576 89999999988887777666554 37888999987632          1124


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=85.52  E-value=1.6  Score=33.93  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|--|++ |.++..+    ++.|. +|+.++.+++.++.+.+.+...+..++.++..|+.+..     +     ..+.
T Consensus        42 k~vlVTGas-~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           42 RSVLVTGGT-KGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             CEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            456666654 4444444    45577 89999999887777776665544347888999987632     0     1146


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       120 iD~lvnnAg~  129 (293)
T 3rih_A          120 LDVVCANAGI  129 (293)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            7998876543

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=85.48  E-value=0.18  Score=40.84  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=52.2

Q ss_pred             CCcEEEec-CCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEE
Q 028957            1 MTSVLELG-CGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG-~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~   72 (201)
                      |++||-.| +|. |..+..+++. |. +|++++ +++..+.+++    .+.+  .++  |..+..     .....+|+|+
T Consensus       184 g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~--~v~--~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          184 GKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD--DVI--DYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS--EEE--ETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC--EEE--ECCchHHHHHHhhcCCCCEEE
Confidence            46889998 443 7777777665 55 899988 6665555532    3322  122  211110     0114689988


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ....-                    ....++...+.|+++|+++.+.
T Consensus       254 d~~g~--------------------~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          254 DNVGG--------------------STETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             ESSCT--------------------THHHHGGGGBCSSSCCEEEESC
T ss_pred             ECCCC--------------------hhhhhHHHHHhhcCCcEEEEeC
Confidence            53221                    0124566778899999988764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=85.36  E-value=2.1  Score=32.96  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|-.|++ |.++..+    ++.|. +|++++.+++.++.+.+.+...+...+.++..|+.+..     +     ..+.
T Consensus        34 k~~lVTGas-~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           34 RIALVTGGG-TGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             CEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            456666654 5555444    44566 89999999888777766654433234588999987632     0     1146


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       112 iD~lvnnAG~  121 (281)
T 4dry_A          112 LDLLVNNAGS  121 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            7999876543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=85.18  E-value=3.6  Score=31.63  Aligned_cols=73  Identities=22%  Similarity=0.369  Sum_probs=48.7

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|--|++. .++..+    ++.|. +|+.++.+.+.++.+.+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        29 k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           29 PVALITGAGS-GIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CEEEEESCSS-HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4566666554 444444    44576 89999999988887777665544 36888999987632     0     1146


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999876554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=85.15  E-value=2.6  Score=31.47  Aligned_cols=71  Identities=10%  Similarity=0.144  Sum_probs=45.9

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~   70 (201)
                      +++||-.|++ |.++..+    ++.|. +|++++.+++.++...+.+.    .++.+...|+.+..      -..+..|+
T Consensus        14 ~k~vlVTGas-~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           14 GKTSLITGAS-SGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            4567766655 4444444    44566 89999999888777665543    36788888876531      11246899


Q ss_pred             EEecccc
Q 028957           71 VIEKATM   77 (201)
Q Consensus        71 v~~~~~l   77 (201)
                      ++.+...
T Consensus        88 li~~Ag~   94 (249)
T 3f9i_A           88 LVCNAGI   94 (249)
T ss_dssp             EEECCC-
T ss_pred             EEECCCC
Confidence            9876543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.13  E-value=3.9  Score=31.23  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC-----C-----C
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP-----F-----S   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~-----~-----~   64 (201)
                      ++++|--|++ |.++..    +++.|. +|+.++.+++.++.+.+.+...+.  .++.++..|+.+..     +     .
T Consensus        11 ~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGG-SGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3567767655 444444    445576 899999999888877777665442  26788999987632     0     0


Q ss_pred             CCceeEEEecccc
Q 028957           65 NDCFDVVIEKATM   77 (201)
Q Consensus        65 ~~~~D~v~~~~~l   77 (201)
                      .+..|+++.+...
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1367988876543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=85.09  E-value=3.3  Score=30.83  Aligned_cols=75  Identities=8%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC--CCC-----C-----C
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML--DLP-----F-----S   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~--~~~-----~-----~   64 (201)
                      ++++|-.|++ |.++..+    ++.|. +|+.++.+++.++...+.+...+.++..++..|+.  +..     +     .
T Consensus        14 ~k~vlITGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           14 GRVILVTGAA-RGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            3566666654 5554444    44576 89999999998888877776655456778887763  211     0     0


Q ss_pred             CCceeEEEecccc
Q 028957           65 NDCFDVVIEKATM   77 (201)
Q Consensus        65 ~~~~D~v~~~~~l   77 (201)
                      .+..|+++.+...
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1367988876543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=85.08  E-value=6.8  Score=30.61  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=55.1

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|--+|+|.  +.++..++ .|. .|++.|.+++.++.+.+.+......++.+ ..|...    -...|+|+..-.   
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~----~~~aDlVieavp---   82 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEF-TTTLEK----VKDCDIVMEAVF---   82 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEE-ESSCTT----GGGCSEEEECCC---
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEE-eCCHHH----HcCCCEEEEcCc---
Confidence            4677788886  35667777 777 89999999999988877621111113332 233321    245699986321   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                                   +...-...++.++...  |+..+..
T Consensus        83 -------------e~~~vk~~l~~~l~~~--~~~Ilas  105 (293)
T 1zej_A           83 -------------EDLNTKVEVLREVERL--TNAPLCS  105 (293)
T ss_dssp             -------------SCHHHHHHHHHHHHTT--CCSCEEE
T ss_pred             -------------CCHHHHHHHHHHHhcC--CCCEEEE
Confidence                         2333345666776665  7665543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=85.05  E-value=8.3  Score=29.04  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=40.5

Q ss_pred             CcEEEecCCC-ChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            2 TSVLELGCGN-SRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         2 ~~vLDlG~G~-G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      +++|-.|+++ |.++..++    +.|. +|++++.++...+.+.+.....+  ...++..|+.+..          -..+
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5677777652 55555544    4566 89999987621122222111112  3467888877531          1124


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999876543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=84.99  E-value=3.7  Score=32.23  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEE-----EEcccCCCCCCCCceeEEEec
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKV-----LEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~-----~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      .+|.-+|+|. | .++..+++.|. .|+.+ .+++.++..++.-.....+...+     ...|...    ...+|+|+..
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vila   93 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA----VQGADLVLFC   93 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG----GTTCSEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH----cCCCCEEEEE
Confidence            5788888886 3 45555556666 88888 88887777665310000011111     0112111    2467988853


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      --                  ......+++.+...++++..++....
T Consensus        94 vk------------------~~~~~~~l~~l~~~l~~~~~iv~~~n  121 (318)
T 3hwr_A           94 VK------------------STDTQSAALAMKPALAKSALVLSLQN  121 (318)
T ss_dssp             CC------------------GGGHHHHHHHHTTTSCTTCEEEEECS
T ss_pred             cc------------------cccHHHHHHHHHHhcCCCCEEEEeCC
Confidence            21                  13567888999999998877665543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=84.98  E-value=4.5  Score=31.71  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      +++||--|++.|.   ++..+++.|. +|++++.+++.++.+.+.+...+. .++.++..|+.+..     +     ..+
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            3567777766552   3444455577 899999999888877766654431 26888999987632     0     124


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        87 ~id~lv~nAg~   97 (319)
T 3ioy_A           87 PVSILCNNAGV   97 (319)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            67999876554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=84.94  E-value=3.2  Score=30.64  Aligned_cols=75  Identities=23%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|+.++.+.+.++.+.+.+....-.++.++..|+.+..     +.     .+
T Consensus         2 ~k~vlITGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGAS-RGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            3567767654 4444444    44576 89999999888777666554221247888999987632     11     13


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            68998876554

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=84.93  E-value=0.38  Score=37.55  Aligned_cols=88  Identities=13%  Similarity=0.111  Sum_probs=54.5

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc-CCC--CCCCCceeEEEec
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDL--PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~--~~~~~~~D~v~~~   74 (201)
                      |++||-.|+ | .|..+..+++. |. +|++++.+++..+.+++    .+..  .++..+- .+.  ..  +.+|+|+. 
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~--~~~d~vid-  195 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE--EAATYAEVPERAKAW--GGLDLVLE-  195 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS--EEEEGGGHHHHHHHT--TSEEEEEE-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC--EEEECCcchhHHHHh--cCceEEEE-
Confidence            578999997 3 36667777665 55 99999998887777654    2322  1222110 010  01  46899885 


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..-                      ..++...+.|+++|+++....
T Consensus       196 ~g~----------------------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          196 VRG----------------------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             CSC----------------------TTHHHHHTTEEEEEEEEEC--
T ss_pred             CCH----------------------HHHHHHHHhhccCCEEEEEeC
Confidence            221                      245677889999999887543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.91  E-value=0.31  Score=39.40  Aligned_cols=101  Identities=12%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|+-+|+|. |..+..++. .|. +|+++|.+++..+.+.+....    .+.....+..++.-.-..+|+|+......
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            36889999864 444444433 366 999999999888887765432    22222211111100012579998533221


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..    ..|           .-+.+...+.++++|.++-+...
T Consensus       242 ~~----~~~-----------~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          242 GR----RAP-----------ILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             TS----SCC-----------CCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CC----CCC-----------eecCHHHHhhCCCCCEEEEEecC
Confidence            00    000           00123455778999988765543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=84.87  E-value=4.1  Score=31.04  Aligned_cols=73  Identities=21%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEE
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~   72 (201)
                      |+++|-=|++.|   ..+..+++.|. +|+.+|.+..  +.+.+.+...+ .++..++.|+.+..     +..+..|+++
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG-GNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT-CCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            345555555544   23344455577 8999998742  22233333334 36788899987632     3456789988


Q ss_pred             ecccc
Q 028957           73 EKATM   77 (201)
Q Consensus        73 ~~~~l   77 (201)
                      .+...
T Consensus        85 NNAGi   89 (247)
T 4hp8_A           85 NNAGI   89 (247)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            77554

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=84.81  E-value=1.2  Score=42.13  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=41.1

Q ss_pred             cEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc
Q 028957            3 SVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM   58 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~   58 (201)
                      ++|||.||.|+++.-+.+.|. ..+.++|+++.+++..+.|+.     ...++..|+
T Consensus       853 ~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI  904 (1330)
T 3av4_A          853 RTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDC  904 (1330)
T ss_dssp             EEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCH
T ss_pred             eEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccH
Confidence            689999999999999998886 478999999999988877753     334555553

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.74  E-value=4.2  Score=30.88  Aligned_cols=73  Identities=12%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      +++||-.|+ +|.++..++    +.|. +|++++.+++..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        31 ~k~vlITGa-sggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           31 GEIVLITGA-GHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC-CeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            356776665 455555554    4466 89999999887776666555443 36888999987632     0     113


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus       108 ~iD~li~~Ag  117 (272)
T 1yb1_A          108 DVSILVNNAG  117 (272)
T ss_dssp             CCSEEEECCC
T ss_pred             CCcEEEECCC
Confidence            6799887654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=84.52  E-value=3.5  Score=31.00  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=48.6

Q ss_pred             CcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhc--CCCceEEEEcccCCCC-----C-----CC
Q 028957            2 TSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLK--GYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      +++|--|++. .++..    +++.|. +|+.++.+++.++.+.+.+...  +..++.++..|+.+..     +     ..
T Consensus         8 k~~lVTGas~-GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            8 GLAIITGASQ-GIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CEEEEESTTS-HHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            5667666654 44444    445577 8999999998887777665543  2246788999987632     0     11


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999876554

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.50  E-value=4.5  Score=30.22  Aligned_cols=72  Identities=17%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CCc
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----NDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~~   67 (201)
                      ++||-.|+ +|.++..++    +.|. +|++++.++...+...+.+...+ .++.++..|+.+..     +.     .+.
T Consensus        14 k~vlItGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           14 RVAIVTGG-AQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45676665 455555554    4566 89999999877766655554433 36888999987632     10     135


Q ss_pred             eeEEEeccc
Q 028957           68 FDVVIEKAT   76 (201)
Q Consensus        68 ~D~v~~~~~   76 (201)
                      .|+++.+..
T Consensus        91 id~vi~~Ag   99 (260)
T 3awd_A           91 VDILVACAG   99 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            799887654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.46  E-value=3.5  Score=31.80  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=56.3

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc---------CC---------CceEEEEcccCCC
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK---------GY---------KEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~---------~~---------~~i~~~~~d~~~~   61 (201)
                      ++|.-+|+|. | .++..++..|. +|+.+|.+++.++.+.+.+...         +.         .++.. ..|....
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence            4677788875 2 34444555677 8999999999888777653211         00         11222 2232211


Q ss_pred             CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                         -...|+|+..-.                +..+....+++++...++|+..++
T Consensus        83 ---~~~aDlVi~av~----------------~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           83 ---VKDADLVIEAVP----------------ESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             ---TTTCSEEEECCC----------------SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ---hccCCEEEEecc----------------CcHHHHHHHHHHHHhhCCCCcEEE
Confidence               134699885321                233456778889999998877654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.45  E-value=6.9  Score=29.75  Aligned_cols=85  Identities=16%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             cEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            3 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         3 ~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +|.=+|||. | .++..+++.+. +|+++|.+++..+.+.+    .+... . ...|....    ...|+|+..-     
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~-~-~~~~~~~~----~~~D~vi~av-----   65 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD-E-AGQDLSLL----QTAKIIFLCT-----   65 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS-E-EESCGGGG----TTCSEEEECS-----
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc-c-ccCCHHHh----CCCCEEEEEC-----
Confidence            577788775 2 33344445566 89999999887766542    22211 1 12333222    3579988532     


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                   .......+++++...++++..++
T Consensus        66 -------------~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           66 -------------PIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             -------------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             -------------CHHHHHHHHHHHHhhCCCCCEEE
Confidence                         12355678888888888876554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.40  E-value=0.58  Score=38.08  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHHH
Q 028957            1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      |++|+-+|+|. |......+. .|. +|+++|.+++.++.+.+.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~  210 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAE  210 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHh
Confidence            57899999854 433333333 366 899999999887777654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=84.02  E-value=5.2  Score=29.94  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=47.9

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus         7 ~k~~lVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            7 GKVALITGAS-SGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TCEEEEESCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3567777655 4454444    44566 89999999887777666555433 36788899987632     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.00  E-value=2.9  Score=31.79  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC----------CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF----------SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~~   67 (201)
                      +++|--|++ |.++..+    ++.|. +|+.++.+++.++.+.+.+....-.++.++..|+.+...          ..+.
T Consensus        21 k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   98 (266)
T 4egf_A           21 KRALITGAT-KGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG   98 (266)
T ss_dssp             CEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred             CEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            456666654 4444444    44566 899999998888777666544211378899999887430          0136


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        99 id~lv~nAg~  108 (266)
T 4egf_A           99 LDVLVNNAGI  108 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CCEEEECCCc
Confidence            8998876543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=83.71  E-value=3.4  Score=31.07  Aligned_cols=75  Identities=9%  Similarity=0.110  Sum_probs=47.8

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc--CCCC----------CC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--LDLP----------FS   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~~----------~~   64 (201)
                      ++++|--|++ |.++..    +++.|. +|++++.+++.++.+.+.+...+..++.++..|+  .+..          -.
T Consensus        12 ~k~vlVTGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           12 DRIILVTGAS-DGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            3566766655 444444    445576 8999999988887776665544333678888888  3321          01


Q ss_pred             CCceeEEEecccc
Q 028957           65 NDCFDVVIEKATM   77 (201)
Q Consensus        65 ~~~~D~v~~~~~l   77 (201)
                      .+..|+++.+...
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2468999876553

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.42  E-value=3.6  Score=31.46  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++..+    ++.|. +|+.++.+.+..+.+.+.+....-.++.++..|+.+..     +     ..+
T Consensus        27 ~k~~lVTGas~-GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           27 DKVAFITGGGS-GIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TCEEEEETTTS-HHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35677777654 444444    44566 89999999877766655543321136888999987632     0     114


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6899887654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=83.29  E-value=5.3  Score=30.54  Aligned_cols=75  Identities=13%  Similarity=0.234  Sum_probs=47.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC----------------HHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS----------------AVAVEKMQERLLLKGYKEVKVLEADMLDL   61 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~----------------~~~~~~~~~~~~~~~~~~i~~~~~d~~~~   61 (201)
                      |+++|--|++.|   .++..+++.|. +|+++|.+                .+.++...+.+...+ .++.++..|+.+.
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   88 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVRDY   88 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCCCH
Confidence            356777776554   23444455577 89999987                666666665555444 3788899998763


Q ss_pred             C-----C-----CCCceeEEEecccc
Q 028957           62 P-----F-----SNDCFDVVIEKATM   77 (201)
Q Consensus        62 ~-----~-----~~~~~D~v~~~~~l   77 (201)
                      .     +     ..+..|+++.+...
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            2     0     11468998876554

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=83.26  E-value=5.3  Score=30.90  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC------------HHHHHHHHHHHhhcCCCceEEEEcccCCCC---
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS------------AVAVEKMQERLLLKGYKEVKVLEADMLDLP---   62 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~------------~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---   62 (201)
                      |+++|--|++.|   .++..+++.|. +|+++|.+            ++.++...+.+...+ .++.++..|+.+..   
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHH
Confidence            356777776554   23344455577 89999986            666666665555544 37888999987632   


Q ss_pred             --C-----CCCceeEEEecccc
Q 028957           63 --F-----SNDCFDVVIEKATM   77 (201)
Q Consensus        63 --~-----~~~~~D~v~~~~~l   77 (201)
                        +     ..+..|+++.+...
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence              1     11468998876553

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.24  E-value=1.4  Score=37.23  Aligned_cols=87  Identities=11%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|+-+|+|. |......++. |. +|+++|.++...+.+.+    .+.   .+  .++...   -...|+|+....-.
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~----~Ga---~~--~~l~e~---l~~aDvVi~atgt~  340 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMM----EGF---DV--VTVEEA---IGDADIVVTATGNK  340 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC---EE--CCHHHH---GGGCSEEEECSSSS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC---EE--ecHHHH---HhCCCEEEECCCCH
Confidence            57889999865 4444444443 55 99999999987666543    232   22  122221   13579998632111


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHH-HHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAML-EGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~gG~l~~~~~~  121 (201)
                      .                     ++ .+..+.|++||+++.+...
T Consensus       341 ~---------------------~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          341 D---------------------IIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             C---------------------SBCHHHHHHSCTTCEEEECSSS
T ss_pred             H---------------------HHHHHHHHhcCCCcEEEEeCCC
Confidence            1                     11 2455678999998866543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=83.22  E-value=5.4  Score=30.42  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEEC-------------CHHHHHHHHHHHhhcCCCceEEEEcccCCCC--
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDL-------------SAVAVEKMQERLLLKGYKEVKVLEADMLDLP--   62 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~-------------~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--   62 (201)
                      |+++|--|++.|   .++..+++.|. +|+++|.             +++.++.+.+.+...+ .++.++..|+.+..  
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-RKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHH
Confidence            356676766544   23334445576 8999997             6777777666665544 46888999987632  


Q ss_pred             ---C-----CCCceeEEEecccc
Q 028957           63 ---F-----SNDCFDVVIEKATM   77 (201)
Q Consensus        63 ---~-----~~~~~D~v~~~~~l   77 (201)
                         +     ..+..|+++.+...
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence               0     01368998876543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=83.22  E-value=5.4  Score=30.06  Aligned_cols=74  Identities=22%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus         7 ~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            7 GKVCLVTGAG-GNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3567766654 4444444    44566 89999999887776666555433 36788889987632     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67998876543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=83.20  E-value=14  Score=30.83  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHH-HHHHHH---HhhcC-C---------CceEEEEcccCCCCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAV-EKMQER---LLLKG-Y---------KEVKVLEADMLDLPFSN   65 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~-~~~~~~---~~~~~-~---------~~i~~~~~d~~~~~~~~   65 (201)
                      ++|--||+|.  +.++..+++.|. .|++.|.+++.. ....++   +...+ +         .++.+ ..|...    -
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a----l  128 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK----L  128 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG----C
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH----H
Confidence            4677788886  455666677777 999999998721 111111   11112 1         12333 234322    2


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...|+|+..-.                +...-...+++++.+.++|+..+...+
T Consensus       129 ~~aDlVIeAVp----------------e~~~vk~~v~~~l~~~~~~~aIlasnT  166 (460)
T 3k6j_A          129 SNCDLIVESVI----------------EDMKLKKELFANLENICKSTCIFGTNT  166 (460)
T ss_dssp             TTCSEEEECCC----------------SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             ccCCEEEEcCC----------------CCHHHHHHHHHHHHhhCCCCCEEEecC
Confidence            35699985311                233445678899999999987765443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=83.13  E-value=5.3  Score=30.06  Aligned_cols=74  Identities=12%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----C-
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----N-   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~-   65 (201)
                      ++++|--|+ +|.++..+    ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +.     . 
T Consensus         9 ~k~vlVTGa-s~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            9 GCTALVTGG-SRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TCEEEEESC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356776665 45555444    44566 89999999887776655554433 36788889987632     10     1 


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            568999876543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.08  E-value=5.2  Score=33.64  Aligned_cols=96  Identities=23%  Similarity=0.326  Sum_probs=59.0

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-------cC-C---------CceEEEEcccCCCC
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG-Y---------KEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-------~~-~---------~~i~~~~~d~~~~~   62 (201)
                      ++|--+|+|.  +.++..+++.|. .|++.|.+++.++.+.+....       .+ .         .++.+ ..|...  
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   81 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA--   81 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG--
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH--
Confidence            3677788876  345556666777 899999999999887764321       11 0         12332 233322  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                        -...|+|+..-.                +...-...+++++.+.++++..+...+
T Consensus        82 --~~~aDlVIeAVp----------------e~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           82 --LAAADLVIEAAS----------------ERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             --GGGCSEEEECCC----------------CCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --hcCCCEEEEcCC----------------CcHHHHHHHHHHHHHhhccCcEEEecC
Confidence              235699885311                233445688899999998877654433

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=83.02  E-value=2.9  Score=32.08  Aligned_cols=74  Identities=11%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++..    +++.|. +|++++.+++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        32 gk~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           32 GKRALITGAST-GIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TCEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35677666654 44444    445576 89999999887777766665544 36788999987632     1     113


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus       109 ~iD~lvnnAg~  119 (276)
T 3r1i_A          109 GIDIAVCNAGI  119 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999876543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=82.99  E-value=7.5  Score=30.60  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=37.5

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEE-CCHHHHHHHHHHHh-hcCCCceEEEEcccCCC
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCID-LSAVAVEKMQERLL-LKGYKEVKVLEADMLDL   61 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD-~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~   61 (201)
                      +++|-.|+ +|.++..++    +.|. +|++++ .+++.++.+.+.+. ..+ .++.++..|+.+.
T Consensus        47 k~~lVTGa-s~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~d~  109 (328)
T 2qhx_A           47 PVALVTGA-AKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNV  109 (328)
T ss_dssp             CEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSS
T ss_pred             CEEEEECC-CCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcC-CeEEEEEeeCCCc
Confidence            45565554 455555554    4466 899999 88887776666554 222 3688899998764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.99  E-value=5.1  Score=30.47  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC------------HHHHHHHHHHHhhcCCCceEEEEcccCCCC---
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS------------AVAVEKMQERLLLKGYKEVKVLEADMLDLP---   62 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~------------~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---   62 (201)
                      |+++|--|++.|   .++..+++.|. +|+++|.+            .+.++...+.+...+ .++.++..|+.+..   
T Consensus        13 gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           13 GKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRDRESLS   90 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHH
Confidence            356777775543   23344445577 89999976            666666655554444 37889999987632   


Q ss_pred             --C-----CCCceeEEEecccc
Q 028957           63 --F-----SNDCFDVVIEKATM   77 (201)
Q Consensus        63 --~-----~~~~~D~v~~~~~l   77 (201)
                        +     ..+..|+++.+...
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence              1     01368999876554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=82.88  E-value=4.8  Score=31.27  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|--+|+|. | .++..+++.|. +|++.|.+++.++.+.+.    +.   .....+....   -...|+|+..-.   
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~---~~~~~~~~e~---~~~aDvvi~~vp---   73 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE----GA---CGAAASAREF---AGVVDALVILVV---   73 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TC---SEEESSSTTT---TTTCSEEEECCS---
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc----CC---ccccCCHHHH---HhcCCEEEEECC---
Confidence            3577787765 2 34444455566 899999999877766542    21   1123333322   134699886311   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHH---HHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAML---EGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~gG~l~~~~  119 (201)
                                    .....+.++   +.+...+++|..++-.+
T Consensus        74 --------------~~~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           74 --------------NAAQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             --------------SHHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             --------------CHHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence                          112345555   66677788876665443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=82.70  E-value=1  Score=36.06  Aligned_cols=31  Identities=3%  Similarity=-0.021  Sum_probs=21.7

Q ss_pred             CcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCH
Q 028957            2 TSVLELGC-GN-SRLSEGLYND-GITAITCIDLSA   33 (201)
Q Consensus         2 ~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~   33 (201)
                      ++||-.|+ |. |.++..+++. |. +++++.-+.
T Consensus       169 ~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~  202 (364)
T 1gu7_A          169 DWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDR  202 (364)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred             cEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            78898887 43 7777777775 55 777776443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=82.56  E-value=5.7  Score=29.49  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=46.7

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++..    +++.|. +|++++.+++.++...+.+..    ++.++..|+.+..     +     ..+
T Consensus         3 ~k~vlVTGas~-GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            3 LGHIIVTGAGS-GLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN----AVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             CCEEEEESTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC----CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35677777654 44444    445576 899999998888777665532    5788999987632     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        77 ~id~lvnnAg~   87 (235)
T 3l6e_A           77 LPELVLHCAGT   87 (235)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            67998876544

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=82.49  E-value=6.2  Score=29.98  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC-C
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN-D   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~-~   66 (201)
                      +++|-.|+ +|.++..+    ++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     .. +
T Consensus        22 k~vlVTGa-s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           22 TTALVTGG-SKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             CEEEEESC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CEEEEECC-cchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            55676665 45555444    44566 89999999887776665554433 36788899987532     1     01 5


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            78999876543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=82.36  E-value=6.2  Score=30.10  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|-.|++ |.++..+    ++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        23 k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           23 EVALVTGAT-SGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG-VEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             CEEEEETCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            567767654 4454444    44566 89999999887776665554433 36788889987532     0     1236


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       100 iD~lv~~Ag~  109 (277)
T 2rhc_B          100 VDVLVNNAGR  109 (277)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8998876543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=82.29  E-value=5.9  Score=30.11  Aligned_cols=74  Identities=18%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             CCcEEEecCC-CChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957            1 MTSVLELGCG-NSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN   65 (201)
Q Consensus         1 ~~~vLDlG~G-~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~   65 (201)
                      ++++|-.|++ +|.++..++    +.|. +|++++.+++ .+...+.+.... .++.++..|+.+..     +     ..
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQEL-NSPYVYELDVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578888875 255555554    4466 8999998765 222222222211 24677888887632     0     12


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        83 g~id~lv~nAg~   94 (275)
T 2pd4_A           83 GSLDFIVHSVAF   94 (275)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            468999876543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=82.16  E-value=4.7  Score=30.34  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C---CCC
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F---SND   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~---~~~   66 (201)
                      +++|--|+ +|.++..++    +.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..        .   ..+
T Consensus         6 k~vlVTGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            6 QVCVVTGA-SRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             CEEEESST-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS-SEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            45666664 455555554    4566 89999999887776665554433 36788899987632        0   035


Q ss_pred             ceeEEEecc
Q 028957           67 CFDVVIEKA   75 (201)
Q Consensus        67 ~~D~v~~~~   75 (201)
                      ..|+++.+.
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            679998776

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=82.13  E-value=4.4  Score=30.92  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~   67 (201)
                      +++|--|+ +|.++..+    ++.|. +|++++.+++..+...+.+...+ .++.++..|+.+..     +     ..+.
T Consensus        29 k~~lVTGa-s~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           29 QVAIVTGA-SRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAG-LEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             CEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHT-CCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            45665554 45554444    44576 89999999888877776665544 36788888987632     0     1136


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8998876543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=81.96  E-value=3.9  Score=31.16  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             CcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCCce
Q 028957            2 TSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSNDCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~~~   68 (201)
                      +++|-.|++. .++..    +++.|. +|++++.+.+.++.+.+.+.    .++.++..|+.+..         ...+..
T Consensus        31 k~vlVTGas~-GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           31 ASAIVSGGAG-GLGEATVRRLHADGL-GVVIADLAAEKGKALADELG----NRAEFVSTNVTSEDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             EEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----TTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred             CEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC----CceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4567667654 44444    445576 89999999888777666552    36889999987632         122467


Q ss_pred             eEEEec
Q 028957           69 DVVIEK   74 (201)
Q Consensus        69 D~v~~~   74 (201)
                      |+++.+
T Consensus       105 d~lv~~  110 (281)
T 3ppi_A          105 RYAVVA  110 (281)
T ss_dssp             EEEEEC
T ss_pred             CeEEEc
Confidence            888865

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=81.94  E-value=2.4  Score=32.63  Aligned_cols=73  Identities=14%  Similarity=0.203  Sum_probs=47.8

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|--|++. .++..    +++.|. +|++++.+++.++.+.+.+...+ .++.++..|+.+..     +     ..+
T Consensus         8 gk~vlVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            8 GKIAIVTGASS-GIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TCEEEESSTTS-HHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35566666554 44444    445576 89999999988877777665443 36788888887632     0     114


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        85 ~iD~lvnnAg   94 (280)
T 3tox_A           85 GLDTAFNNAG   94 (280)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899887654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=81.81  E-value=2.5  Score=32.30  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      |+++|--|++ |.++..+    ++.|. +|+.++.+++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        26 gk~~lVTGas-~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           26 GRTALVTGSS-RGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG-HDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            3556666654 4444444    44576 89999999988887777666544 36788888887632     0     123


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus       103 ~iD~lv~nAg~  113 (271)
T 4ibo_A          103 DVDILVNNAGI  113 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999876553

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=81.81  E-value=2.2  Score=32.47  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=43.3

Q ss_pred             CCcEEEecC-CCChhhHHHHh----cCCCeEEEEECCHHH-HHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----
Q 028957            1 MTSVLELGC-GNSRLSEGLYN----DGITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----   64 (201)
Q Consensus         1 ~~~vLDlG~-G~G~~~~~l~~----~~~~~v~~vD~~~~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----   64 (201)
                      ++++|-.|+ |+|.++..+++    .|. +|++++.+++. ++...+.   .+ .++.++..|+.+..     +.     
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDR---LP-AKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTT---SS-SCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHh---cC-CCceEEEccCCCHHHHHHHHHHHHHH
Confidence            356888887 36666655544    466 89999987643 2333221   12 25678888887632     00     


Q ss_pred             CC---ceeEEEecccc
Q 028957           65 ND---CFDVVIEKATM   77 (201)
Q Consensus        65 ~~---~~D~v~~~~~l   77 (201)
                      .+   ..|+++.+...
T Consensus        82 ~g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGF   97 (269)
T ss_dssp             HCTTCCEEEEEECCCC
T ss_pred             hCCCCCceEEEECCcc
Confidence            12   68999876543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.75  E-value=9.7  Score=29.14  Aligned_cols=83  Identities=18%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             cEEEecC-CC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            3 SVLELGC-GN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         3 ~vLDlG~-G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +|.=+|+ |. | .++..++..+. +|+++|.+++..+.+.+    .+.   ..  .+....   ....|+|+..-    
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~---~~--~~~~~~---~~~aDvVi~av----   75 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGI---PL--TDGDGW---IDEADVVVLAL----   75 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTC---CC--CCSSGG---GGTCSEEEECS----
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCC---Cc--CCHHHH---hcCCCEEEEcC----
Confidence            6778888 75 2 34444555566 89999999887766654    222   11  121111   13579988532    


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                    .......+++.+...++++..++
T Consensus        76 --------------~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           76 --------------PDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             --------------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             --------------CchHHHHHHHHHHHhCCCCCEEE
Confidence                          12346778888888888766544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=81.49  E-value=5.7  Score=29.52  Aligned_cols=72  Identities=13%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CCc
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----NDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~~   67 (201)
                      ++||-.| |+|.++..+++    .|. +|++++.+++..+...+.+...+ .++.++.+|+.+..     +.     .+.
T Consensus        12 ~~vlVtG-asggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           12 KCAIITG-AGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             CEEEETT-TTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4566555 55666655544    465 89999999887766655554433 36788889987532     10     136


Q ss_pred             eeEEEeccc
Q 028957           68 FDVVIEKAT   76 (201)
Q Consensus        68 ~D~v~~~~~   76 (201)
                      .|+++.+..
T Consensus        89 ~d~vi~~Ag   97 (255)
T 1fmc_A           89 VDILVNNAG   97 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899886544

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.43  E-value=5.1  Score=30.71  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             CCcEEEecCCCChhhHH----HHhcCCCeEEEEEC-CHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDL-SAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~   65 (201)
                      ++++|--|++. .++..    +++.|. +|+.++. +++.++...+.+....-.++.++..|+.+..          -..
T Consensus        25 ~k~~lVTGas~-GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           25 TKTAVITGSTS-GIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TCEEEEETCSS-HHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            35677777654 44444    445576 8999998 6666666666555432347888889987632          012


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus       103 g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 GGADILVNNAGV  114 (281)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999876554

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=81.35  E-value=3  Score=32.08  Aligned_cols=71  Identities=23%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-CCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~D~   70 (201)
                      |+++|--|++ |.++..+    ++.|. +|++++.+++..+.+.+.+   + .++.++..|+.+..     + .-+..|+
T Consensus        16 gk~vlVTGas-~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           16 QRTVVITGAN-SGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---A-GQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TCEEEEECCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---S-SEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---c-CCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            3566766655 5554444    44566 8999999987766654433   2 36889999987632     0 1146899


Q ss_pred             EEecccc
Q 028957           71 VIEKATM   77 (201)
Q Consensus        71 v~~~~~l   77 (201)
                      ++.+...
T Consensus        90 lv~nAg~   96 (291)
T 3rd5_A           90 LINNAGI   96 (291)
T ss_dssp             EEECCCC
T ss_pred             EEECCcC
Confidence            9876554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=81.21  E-value=7.4  Score=29.15  Aligned_cols=73  Identities=19%  Similarity=0.351  Sum_probs=47.0

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      ++++|-.|++ |.++..+    ++.|. +|++++.+++..+...+.+...+ .++.++..|+.+..     +     ..+
T Consensus         2 ~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAG-QGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3566766654 4454444    44566 89999999887766655554433 36788889987632     0     113


Q ss_pred             ceeEEEeccc
Q 028957           67 CFDVVIEKAT   76 (201)
Q Consensus        67 ~~D~v~~~~~   76 (201)
                      ..|+++.+..
T Consensus        79 ~id~lv~nAg   88 (256)
T 1geg_A           79 GFDVIVNNAG   88 (256)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899987654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=80.95  E-value=6.4  Score=30.01  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=46.9

Q ss_pred             CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC-----CC-----C
Q 028957            2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP-----FS-----N   65 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~-----~~-----~   65 (201)
                      +++|-.|+ +|.++..+    ++.|. +|++++.+++.++...+.+...+.  .++.++..|+.+..     +.     .
T Consensus         7 k~vlVTGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            7 KTVIITGS-SNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             CEEEETTC-SSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45666665 45555444    44566 899999998877766665544331  16788999987632     10     1


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        85 g~iD~lv~nAg~   96 (280)
T 1xkq_A           85 GKIDVLVNNAGA   96 (280)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            367999876543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=80.79  E-value=7.5  Score=29.72  Aligned_cols=73  Identities=23%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             CcEEEecCCCChhhHH----HHhcCCCeEEEEEC-CHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957            2 TSVLELGCGNSRLSEG----LYNDGITAITCIDL-SAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND   66 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~   66 (201)
                      +++|--|++. .++..    +++.|. +|+.++. +++.++...+.+...+ .++.++..|+.+..     +     ..+
T Consensus        30 k~~lVTGas~-GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           30 PVAIVTGGRR-GIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG-ARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CEEEEecCCC-HHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4566666554 44444    445576 8999985 7777766666655544 37889999987642     0     013


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            68999876554

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=80.77  E-value=2.9  Score=32.02  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---------CCCc
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---------SNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~   67 (201)
                      |+++|--|++ |.++..+    ++.|. +|++++.+++..+.+.+.+...+ .++.++..|+.+...         ..+.
T Consensus        33 gk~~lVTGas-~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           33 GRTALVTGSS-RGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            3556666654 4444444    44576 89999998877776666665544 478889999876420         0146


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       110 iD~lvnnAg~  119 (275)
T 4imr_A          110 VDILVINASA  119 (275)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8998876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	201
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-08
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-07
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	5e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	6e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-05
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-05
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	7e-05
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	3e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	4e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	6e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	0.001
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.003

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 30/186 (16%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADML 59
            VL++ CG    S  L  +G +  +      +   A+++   R     + +  + EA+ L
Sbjct: 59  RVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 118

Query: 60  ----DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
               D+P  +    V+    +   L  + GD    +          L+ +  +++P GL 
Sbjct: 119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHR--------LALKNIASMVRPGGLL 170

Query: 116 ----------ISVSFGQPHFRRPFFNAPQFTWSVEWITFGDG-----FHYFFYILRKGKR 160
                     +S     P     + +      +   +T  +        Y   +   G+ 
Sbjct: 171 VIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230

Query: 161 SSADEE 166
            +    
Sbjct: 231 GAPGFS 236

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 17/200 (8%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL 61
           SVL+LGCG           GI     +D++ V++   + R      + +V     D    
Sbjct: 27  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 86

Query: 62  PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121
                               ++S   ++    T   +      + R L+P G FI     
Sbjct: 87  HMDLGKEFD----------VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136

Query: 122 QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISM 181
           +      +            I            +R+ + +  D   S ++        + 
Sbjct: 137 RDVILERYKQGRMS-NDFYKIELEKMEDVPMESVREYRFTLLD---SVNNCIEYFVDFTR 192

Query: 182 FHEELE--GEDYIFRTNIDE 199
             +  +  G   + R    +
Sbjct: 193 MVDGFKRLGLSLVERKGFID 212

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL++G G   L       G   +  I+ S+++   ++     K    V +++  + ++ 
Sbjct: 36  VVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE 95

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
              +  D++I +     LF  S             +  +L    + L PDGL  
Sbjct: 96  LPVEKVDIIISEWMGYCLFYES------------MLNTVLHARDKWLAPDGLIF 137

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 39/174 (22%)

Query: 4   VLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQE---------RLLLKGYKEVKV 53
            ++LG G  ++   +           ++ + +  +  +          +   K + E  +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 54  LEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
              D L   +     +         V+FVN+             V   L+     +K  G
Sbjct: 215 ERGDFLSEEWRERIANTS-------VIFVNNFAFGPE-------VDHQLKERFANMKEGG 260

Query: 114 LFISVSFGQPHFRRP----------FFNAPQFTW---SVEWITFGDGFHYFFYI 154
             +S     P   R                + +    SV W   G    Y+ + 
Sbjct: 261 RIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSW--TGKPVSYYLHT 312

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 14/147 (9%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++GCG   LS      G   +  +D S +  + M    L K    + +++  + ++  
Sbjct: 39  VLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL 98

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
             +  DV+I +     L   S                +L   ++ L   G          
Sbjct: 99  PVEKVDVIISEWMGYFLLFESMLDS------------VLYAKNKYLAKGGSVYPDIC--T 144

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFHY 150
                  +  +    + +     GF  
Sbjct: 145 ISLVAVSDVNKHADRIAFWDDVYGFKM 171

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 6/149 (4%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL   CG S+    L   G   +   +LS  AVE+       + +   +          
Sbjct: 23  RVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
               C D     A          D               ++ +  ++      + ++   
Sbjct: 82  IEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL-- 139

Query: 123 PHFRRPFFNAPQFTWSVEWIT--FGDGFH 149
             + +     P F+    W+       + 
Sbjct: 140 -EYDQALLEGPPFSVPQTWLHRVMSGNWE 167

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 22/150 (14%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++G G    +             +D +   VE        KG + V+  +     LPF
Sbjct: 20  VLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +D FD++  +                           +  V RVLK DG F+ V    P
Sbjct: 79  PDDSFDIITCRYAAH---------HFSDVR------KAVREVARVLKQDGRFLLVDHYAP 123

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFHYFFY 153
               P  +     +        D  H    
Sbjct: 124 E--DPVLD----EFVNHLNRLRDPSHVRES 147

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 15/150 (10%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
            L+LGCGN R S  LY               A     ER+      +    +   L+   
Sbjct: 34  TLDLGCGNGRNS--LYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT 91

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +  +D ++    M  L                 +  ++  + R  KP G  + V+    
Sbjct: 92  FDGEYDFILSTVVMMFL-------------EAQTIPGLIANMQRCTKPGGYNLIVAAMDT 138

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFHYFFY 153
                    P      E   + +G+    Y
Sbjct: 139 PDFPCTVGFPFAFKEGELRRYYEGWDMLKY 168

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 33/169 (19%)

Query: 4   VLELGCGNSRLSEGLYND-GITAITCIDLSAVAVE-------KMQERLLLKGYKEVKVLE 55
            ++LG G          + G       ++   A +       ++++R  L G +   V  
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279

Query: 56  ADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
           +        N+    +I +    V+ VN+             +   +E + +  K     
Sbjct: 280 SLKKSF-VDNNRVAELIPQCD--VILVNNFLFD-------EDLNKKVEKILQTAKVGCKI 329

Query: 116 ISV-SFGQPHFRRPFFNAPQF------------TWSVEWITFGDGFHYF 151
           IS+ S     ++  F+N                  SV W     G  Y+
Sbjct: 330 ISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSW--THSGGEYY 376

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 18/174 (10%), Positives = 46/174 (26%), Gaps = 50/174 (28%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL-----------------LLK 46
           ++++G G +             IT  D   V  +++   L                 L++
Sbjct: 58  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 117

Query: 47  GYKE----------VKVLEADMLDL---------PFSNDCFDVVIEKATMEVLFVNSGDP 87
           G  E           +V     +D+           +    D ++    +E +  +    
Sbjct: 118 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF 177

Query: 88  WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPF---FNAPQFTWS 138
                         L+ +  +L+P G  + +   +  +             +  
Sbjct: 178 -----------QRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEE 220

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L+LG G+  +      D     T ID+S++   + + R    G  E      +      
Sbjct: 37  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
           +N+  DV      +   +  +G     +             + + LKP G+ +    G+P
Sbjct: 97  ANEKCDVAA---CVGATW-IAGGFAGAEEL-----------LAQSLKPGGIML---IGEP 138

Query: 124 HFRRPFFNAPQFTWSVEWITFGDGFH 149
           ++R+    A +       ++    F 
Sbjct: 139 YWRQL--PATEEIAQACGVSSTSDFL 162

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 18/148 (12%), Positives = 34/148 (22%), Gaps = 15/148 (10%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
             L+L CG   L+E L                         L +        +     L 
Sbjct: 40  DYLDLACGTGNLTENLCPKFKNTWAVD--------------LSQEMLSEAENKFRSQGLK 85

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
               C D+       +   +               +    + V   LK  G+FI      
Sbjct: 86  PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI-FDINS 144

Query: 123 PHFRRPFFNAPQFTWSVEWITFGDGFHY 150
            +          F +  + + +     +
Sbjct: 145 YYKLSQVLGNNDFNYDDDEVFYYWENQF 172

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP 62
            +++GCG   ++  L       +  ID +  A+   +  L   G    V ++E D  +  
Sbjct: 37  AVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95

Query: 63  FSNDCFDVVI 72
                 D+ +
Sbjct: 96  CKIPDIDIAV 105

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 24/151 (15%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++  G   ++          +   DL+   ++  +                       
Sbjct: 19  VLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAF---------IEGNGHQQVEYV 68

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
             D   +        ++         P P       + +   +RVLK  G  + V    P
Sbjct: 69  QGDAEQMPFTDERFHIVTCRIAAHHFPNPA------SFVSEAYRVLKKGGQLLLVDNSAP 122

Query: 124 HFRRPFFNAPQFTWSVEWI-TFGDGFHYFFY 153
                      F     ++    D  H+  +
Sbjct: 123 -------ENDAFDVFYNYVEKERDYSHHRAW 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.88
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.88
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.85
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.82
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.82
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.81
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.78
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.78
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.77
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.72
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.71
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.71
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.69
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.64
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.64
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.63
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.63
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.62
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.61
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.58
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.57
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.56
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.56
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.55
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.52
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.5
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.49
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.49
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.47
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.44
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.42
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.41
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.32
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.3
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.29
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.28
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.27
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.25
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.14
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.14
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.11
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.07
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.99
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.98
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.97
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.95
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.94
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.91
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.9
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.84
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.8
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.79
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.79
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.79
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.78
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.75
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.74
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.71
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.71
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.68
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.59
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.58
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.55
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.34
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.27
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.17
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.14
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.88
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.87
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.51
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.41
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.31
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.27
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.93
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.73
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.72
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.69
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.68
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.48
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.4
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.35
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.11
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.05
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.88
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.76
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.66
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.54
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.41
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.15
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.14
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.01
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.82
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.81
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.74
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.46
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.34
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.31
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.29
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.81
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.57
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.45
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.32
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.08
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.96
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.93
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.82
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.76
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	91.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.21
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.96
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.73
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	90.71
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.7
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.6
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.38
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.15
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.09
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.04
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.86
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.83
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.78
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.74
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	89.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.63
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.56
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.49
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.45
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.31
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.26
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.13
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.99
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	88.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	87.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.7
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.62
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.32
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.92
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.9
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.8
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.45
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.01
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.99
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.95
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.8
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.54
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.5
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.14
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.11
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.55
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	81.39
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	80.36

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.4e-22  Score=155.38  Aligned_cols=106  Identities=25%  Similarity=0.331  Sum_probs=97.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+.+++.++++|+.++++++++||+|+|..+++++
T Consensus        17 ~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~   95 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF   95 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeecc
Confidence            57999999999999999999876 89999999999999999998888888999999999999999999999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     ++..++++++.++|||||++++.++..
T Consensus        96 ---------------~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          96 ---------------SDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ---------------cCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence                           567899999999999999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.88  E-value=1.3e-22  Score=154.71  Aligned_cols=106  Identities=17%  Similarity=0.291  Sum_probs=96.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+.+++.++++|+.++++++++||+|++..++|++
T Consensus        16 ~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~   94 (231)
T d1vl5a_          16 NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF   94 (231)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred             cCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            47999999999999999999887 89999999999999999998888889999999999999989999999999999877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                     ++..++++++.++|||||++++.++..
T Consensus        95 ---------------~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          95 ---------------PNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             ---------------SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ---------------CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                           567899999999999999999876543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=4.8e-21  Score=145.11  Aligned_cols=106  Identities=27%  Similarity=0.383  Sum_probs=94.4

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ .++.++++|+.+++++.++||+|++..+++++ 
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~-  115 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF-  115 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC-
T ss_pred             CEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC-
Confidence            5899999999999999999877 89999999999999999887765 36788999999999999999999999999887 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                                  ...+..++++++.++|||||++++...+.
T Consensus       116 ------------~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         116 ------------EPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             ------------CHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             ------------ChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence                        33578899999999999999998876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=143.17  Aligned_cols=107  Identities=17%  Similarity=0.254  Sum_probs=95.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+|||+|||+|.++..++..++.+|+++|+|+.+++.|++++...+.++++++++|+.+++++.++||+|++..++|++ 
T Consensus        62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~-  140 (222)
T d2ex4a1          62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL-  140 (222)
T ss_dssp             SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS-
T ss_pred             CEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccccc-
Confidence            5799999999999999877766699999999999999999988777678899999999988888999999999999987 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                  ..++..+++++++++|+|||.+++.+..
T Consensus       141 ------------~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         141 ------------TDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             ------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------------hhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence                        3456778999999999999999987654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.82  E-value=5.7e-20  Score=142.20  Aligned_cols=110  Identities=23%  Similarity=0.275  Sum_probs=94.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCC-CCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPF-SNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|..+..+++.+..+|+|+|+|+.+++.|+++....+ ..++.+.++|+...++ ..++||+|+|.+++|
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~  104 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH  104 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred             cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceee
Confidence            57899999999999999998887789999999999999999887665 3478999999977654 356899999999999


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +++           .+.++..++++++.++|+|||.+++..++
T Consensus       105 ~~~-----------~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         105 YAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             GGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ecC-----------CCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            874           34567889999999999999999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.82  E-value=2.9e-20  Score=146.05  Aligned_cols=105  Identities=20%  Similarity=0.385  Sum_probs=93.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||+|.++..+++. +. +|+|+|+++.+++.++++....++ ++++++++|+.++++++++||+|++..+++
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~  146 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFL  146 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGG
T ss_pred             CCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhh
Confidence            579999999999999999886 55 899999999999999999887775 479999999999999999999999999987


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++               ++..++++++.++|||||++++.++.
T Consensus       147 h~---------------~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         147 HS---------------PDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             GC---------------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hc---------------cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            76               45678999999999999999987653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=8.7e-20  Score=136.24  Aligned_cols=106  Identities=23%  Similarity=0.388  Sum_probs=94.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|..+..+++++. +|+++|+|+.+++.++++....+++++.+...|+....+ +++||+|++..++|++
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFL  108 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecC
Confidence            46899999999999999999988 899999999999999999988888889999999988765 5789999999999887


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   +.+...++++++.++|+|||.+++.++.
T Consensus       109 -------------~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         109 -------------EAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             -------------CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                         3357789999999999999999887654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.1e-19  Score=139.87  Aligned_cols=103  Identities=23%  Similarity=0.409  Sum_probs=89.7

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec-ccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~   80 (201)
                      ++|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++++...+. ++.++++|+.+++++ ++||+|+|. .+++++
T Consensus        43 ~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~  119 (251)
T d1wzna1          43 RRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF  119 (251)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred             CEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccc-cccchHhhhhhhhhcC
Confidence            5799999999999999999987 899999999999999999887664 799999999998876 689999986 455544


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   +.++..+++++++++|||||++++...
T Consensus       120 -------------~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         120 -------------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------ChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence                         446788999999999999999987543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=1.7e-19  Score=138.88  Aligned_cols=105  Identities=20%  Similarity=0.310  Sum_probs=90.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec-cccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l~~   79 (201)
                      +++|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. +++++++|+.+++++ ++||+|+|. .++++
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhccc-ccccccceeeeeeec
Confidence            46899999999999999999987 899999999999999999887664 799999999987764 689999985 45665


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +            .+.++..++++++++.|+|||.+++...
T Consensus       115 ~------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         115 I------------IDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             C------------CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             c------------CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            5            3567889999999999999999887543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.6e-19  Score=138.93  Aligned_cols=104  Identities=21%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|..+..+++....+|+|+|+|+.+++.++++....+. ++++++++|+.++ .++++||+|++..++++
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~  112 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGATWI  112 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGG
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEehhhc
Confidence            579999999999999999876334999999999999999999888875 4599999999986 45789999999988876


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               .+..++++++.++|||||++++.+.
T Consensus       113 ~---------------~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_         113 A---------------GGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             T---------------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             c---------------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence            6               4568899999999999999998654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.78  E-value=3.2e-19  Score=138.21  Aligned_cols=106  Identities=16%  Similarity=0.227  Sum_probs=92.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +.+|||+|||+|.++..++..++..|+++|+++.+++.|++++...  ++++++++|+.+++++.++||+|++.+++|++
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl  171 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccCCCccceEEeecccccc
Confidence            3589999999999999988776668999999999999999887643  47899999999988888999999999999987


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   ..++..++++++++.|+|||.+++.+..
T Consensus       172 -------------~d~d~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         172 -------------TDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -------------chhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence                         3456789999999999999999987643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.2e-19  Score=137.43  Aligned_cols=98  Identities=30%  Similarity=0.440  Sum_probs=84.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec-cccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK-ATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++..      ..++++|+.++++++++||+|++. .++|+
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKAEDLPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             CCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccccccccccccccceeeecchhhh
Confidence            46899999999999999999887 89999999999999998632      246789999999988999999985 56776


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               ++..++++++.++|||||.+++..+
T Consensus       116 ~---------------~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         116 V---------------ENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             C---------------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h---------------hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            5               4567899999999999999988764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.77  E-value=2e-18  Score=131.12  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcC--CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~--~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +.+|||+|||+|..+..+++..  +. +|+|+|+|+.|++.|+++++..+ ..++.+...|+...+  ...+|++++..+
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~~  117 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNFT  117 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEESC
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEeee
Confidence            4689999999999999998752  22 99999999999999999987655 345777777776554  567899999999


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      +|++             +.++..+++++++++|+|||.+++.+...+
T Consensus       118 l~~~-------------~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         118 LQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             GGGS-------------CGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             cccc-------------ChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence            9886             456788999999999999999998876543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.76  E-value=1e-18  Score=132.83  Aligned_cols=101  Identities=21%  Similarity=0.304  Sum_probs=87.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      +++|||+|||+|.++..+++.+. +|+|+|+|+++++.++++..    .++.++.+|+.+.++ +++||+|++..+++++
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~   94 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI   94 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----ccccccccccccccc-ccccccccccceeEec
Confidence            57899999999999999998887 89999999999999987753    378999999988765 4789999999999877


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHh-hcccCCcEEEEEecCC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVH-RVLKPDGLFISVSFGQ  122 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~~~~~~~  122 (201)
                                     ++...+++++. ++|+|||.+++..++.
T Consensus        95 ---------------~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          95 ---------------DDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             ---------------SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ---------------CCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence                           56688899998 7899999999877553

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.76  E-value=1.1e-18  Score=129.21  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC------------CCceEEEEcccCCCC-CCCCc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG------------YKEVKVLEADMLDLP-FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~------------~~~i~~~~~d~~~~~-~~~~~   67 (201)
                      |++|||+|||+|..+..+++.|. +|+|+|+|+.+++.++++.....            ...+.+.++|+..++ .....
T Consensus        21 ~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~   99 (201)
T d1pjza_          21 GARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH   99 (201)
T ss_dssp             TCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred             CCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence            57999999999999999999998 99999999999999999875432            134578888888765 33467


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ||+|++..+++++             ...+..++++++.+.|||||.+++..+..
T Consensus       100 ~D~i~~~~~l~~l-------------~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_         100 CAAFYDRAAMIAL-------------PADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             EEEEEEESCGGGS-------------CHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             eeEEEEEeeeEec-------------chhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            9999999999887             44677899999999999999988766543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.75  E-value=2.7e-18  Score=134.80  Aligned_cols=103  Identities=23%  Similarity=0.306  Sum_probs=90.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||+|||+|.++..++...+  .+|+|+|+++.+++.++++....+. ++++.++|+..++++ ++||+|++..++|
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~-~~fD~v~~~~~l~  105 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-DKYDIAICHAFLL  105 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred             cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc-CCceEEEEehhhh
Confidence            46899999999999999988633  2899999999999999999887664 789999999988765 5799999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++               ++..++++++.++|||||.+++.+.
T Consensus       106 ~~---------------~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         106 HM---------------TTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GC---------------SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cC---------------CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            77               4567899999999999999998774

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=2.5e-18  Score=128.87  Aligned_cols=95  Identities=23%  Similarity=0.320  Sum_probs=83.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF   81 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~   81 (201)
                      .+|||+|||+|.++..+.     +++|+|+|+.+++.++++       ++.++++|+.++++++++||+|++..+++++ 
T Consensus        38 ~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-  104 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICFV-  104 (208)
T ss_dssp             SCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS-
T ss_pred             CeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccccc-
Confidence            579999999999987763     578999999999998864       6899999999999888999999999999877 


Q ss_pred             ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                    ++..++++++.++|+|||.+++.++...
T Consensus       105 --------------~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_         105 --------------DDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             --------------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             --------------cccccchhhhhhcCCCCceEEEEecCCc
Confidence                          4578899999999999999998876554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=8.1e-18  Score=124.33  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=88.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..++..+. +|+++|+++++++.++++++..++ ++++++++|+.+...+...||+|++....+ 
T Consensus        34 g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~-  111 (186)
T d1l3ia_          34 NDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG-  111 (186)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-
T ss_pred             CCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-
Confidence            57999999999999999988765 999999999999999999999886 589999999987766678999999865442 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                       ....+++.+.+.|||||++++....
T Consensus       112 -----------------~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         112 -----------------ELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             -----------------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             -----------------cchHHHHHHHHHhCcCCEEEEEeec
Confidence                             3467899999999999998876543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=1.5e-17  Score=124.51  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=92.3

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccce
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEV   79 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~   79 (201)
                      .|||+|||+|..+..+|+..+. .++|+|+++.++..+.++....+++|+.++++|+..+.  ++++++|.|++      
T Consensus        32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i------  105 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL------  105 (204)
T ss_dssp             EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE------
T ss_pred             eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc------
Confidence            5899999999999999998776 99999999999999999999999999999999998754  67788888775      


Q ss_pred             eeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~  119 (201)
                         .+++||.+..+....+  ..+++.+.++|||||.|++.+
T Consensus       106 ---~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         106 ---NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             ---ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ---ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence               2468997655444332  589999999999999998876

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=3.9e-17  Score=121.32  Aligned_cols=105  Identities=18%  Similarity=0.341  Sum_probs=88.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++..+++.  ++++..+|+.+ ..++++||+|+++.++|
T Consensus        53 ~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~  130 (194)
T d1dusa_          53 DDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIR  130 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCST
T ss_pred             CCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEE
Confidence            57899999999999999988766 9999999999999999998877653  58899999876 56678999999987765


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..              .+...++++++.+.|+|||.+++....
T Consensus       131 ~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         131 AG--------------KEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TC--------------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ec--------------chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            43              244678999999999999998875443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.72  E-value=4.7e-17  Score=121.76  Aligned_cols=108  Identities=21%  Similarity=0.359  Sum_probs=92.8

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccce
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEV   79 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~   79 (201)
                      .|||+|||+|.++..+|+..+. .++|+|+++.++..+.++....+++|+.++.+|+..+.  ++..++|.|++      
T Consensus        34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i------  107 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL------  107 (204)
T ss_dssp             EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE------
T ss_pred             eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc------
Confidence            5899999999999999998766 99999999999999999999888899999999998754  66778888764      


Q ss_pred             eeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~  119 (201)
                         .+++||.+..++...+  ..+++.+.++|+|||.+++.+
T Consensus       108 ---~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         108 ---NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             ---ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ---cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence               3579998876555443  689999999999999998876

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.5e-17  Score=129.60  Aligned_cols=97  Identities=29%  Similarity=0.446  Sum_probs=83.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..+++.++. .++|+|+|+.+++.++++.     +++.+.++|+.++++++++||+|++..++++
T Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            468999999999999999998765 9999999999999998763     4789999999999999999999998655432


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                                            ++++.++|||||.+++.+++..+
T Consensus       160 ----------------------~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         160 ----------------------AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             ----------------------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             ----------------------HHHHHHHhCCCcEEEEEeeCCcc
Confidence                                  45789999999999999876544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=126.93  Aligned_cols=107  Identities=11%  Similarity=0.203  Sum_probs=91.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-----------------CCceEEEEcccCCCC-
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----------------YKEVKVLEADMLDLP-   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~d~~~~~-   62 (201)
                      +.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.++++.....                 ..++.+.++|+..++ 
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~  124 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR  124 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence            46899999999999999999998 99999999999999988754321                 236889999998764 


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...+.||+|+...++|++             +.+.....++++.++|+|||++++..+.
T Consensus       125 ~~~~~fd~i~~~~~l~~~-------------~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         125 TNIGKFDMIWDRGALVAI-------------NPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             SCCCCEEEEEESSSTTTS-------------CGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccCceeEEEEEEEEEec-------------cchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            556789999999999887             4467889999999999999998877654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.69  E-value=8e-17  Score=124.37  Aligned_cols=104  Identities=18%  Similarity=0.275  Sum_probs=88.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|||||||+|.++..+++..+. +++++|+ +++++.++++....+ ..+++++.+|+.+. . ..+||+|++..++|+
T Consensus        82 ~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~vlh~  158 (253)
T d1tw3a2          82 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSFVLLN  158 (253)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEESCGGG
T ss_pred             CEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeecccccc
Confidence            68999999999999999998766 8999998 678999999888776 35799999998763 2 357999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +             ..++..+++++++++|||||++++.+..
T Consensus       159 ~-------------~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         159 W-------------PDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             S-------------CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             C-------------CchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            6             4467789999999999999999988754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=2.4e-17  Score=127.24  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+.+++ +++++++|+.. ..+.++||+|+++...   
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~-~~~~~~fD~V~ani~~---  194 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEA-ALPFGPFDLLVANLYA---  194 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHH-HGGGCCEEEEEEECCH---
T ss_pred             cCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccc-cccccccchhhhcccc---
Confidence            57999999999999999998887 899999999999999999998876 56888988765 2446789999986443   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                     ....++++.+.++|||||++++...
T Consensus       195 ---------------~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         195 ---------------ELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             ---------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence                           3457888999999999999998654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.1e-16  Score=125.22  Aligned_cols=103  Identities=15%  Similarity=0.210  Sum_probs=88.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|||+|||+|.++..+++. +. +|+++|+|+++++.++++....+. .++.+...|...+   +++||.|++..+++
T Consensus        53 g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~e  128 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFE  128 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGG
T ss_pred             CCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHH
Confidence            679999999999999998877 55 999999999999999999988774 3567777776654   47899999999998


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++             +.+....+++++.++|||||++++.+.
T Consensus       129 h~-------------~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         129 HF-------------GHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             GT-------------CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             Hh-------------hhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            87             345678999999999999999998653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=3.9e-16  Score=122.27  Aligned_cols=104  Identities=17%  Similarity=0.275  Sum_probs=89.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||+|||.|.++..+++. |. +|+|+++|++.++.++++....+ .+++.+..+|+..++   ++||.|++..++.
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~e  138 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE  138 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhh
Confidence            689999999999999988776 55 99999999999999999887766 567899999987764   6899999998887


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ++             .......+++++.++|+|||++++.+..
T Consensus       139 h~-------------~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         139 HF-------------GHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GT-------------CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hc-------------CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            76             2355678999999999999999986654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=4.9e-16  Score=122.05  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=89.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |.+|||||||.|.++..+++. ++ +|+|+++|++.++.++++....++ .++.+...|..   ..+++||.|++..++.
T Consensus        62 G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie~~e  137 (291)
T d1kpia_          62 GMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLGAFE  137 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEESCGG
T ss_pred             CCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeechhHH
Confidence            689999999999999988866 55 999999999999999999888774 35777777764   3468899999999987


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      |+.    ++  ......+..+.+++++.++|||||++++.+...+
T Consensus       138 H~~----~~--~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         138 HFA----DG--AGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             GTT----CC--SSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             hcc----hh--hhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            761    10  0001235688999999999999999998776543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=3.8e-16  Score=117.58  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|||+|||+|..+..+++. +.. +|+++|+++++++.++++++..+..++.++++|+.......++||+|++..+++
T Consensus        76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (213)
T d1dl5a1          76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVD  155 (213)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHH
Confidence            579999999999999999876 443 899999999999999999998888899999999887666677899999988776


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ++               .      +++.+.|||||++++..
T Consensus       156 ~~---------------p------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         156 EV---------------P------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CC---------------C------HHHHHHEEEEEEEEEEB
T ss_pred             Hh---------------H------HHHHHhcCCCcEEEEEE
Confidence            54               1      24567899999998743

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.64  E-value=1.2e-15  Score=117.83  Aligned_cols=104  Identities=24%  Similarity=0.354  Sum_probs=89.2

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|||||||+|.++..+++..+. +++++|+ +++++.+++++...+ .+++.++.+|... +.+ .++|+|++.+++|+
T Consensus        83 ~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~  159 (256)
T d1qzza2          83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVLLN  159 (256)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCGGG
T ss_pred             CEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccccc
Confidence            68999999999999999998776 9999997 788999999887766 4579999999875 343 46999999999987


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +             +.++..++|+++++.|||||++++.+..
T Consensus       160 ~-------------~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         160 W-------------SDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             S-------------CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             c-------------CcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            6             4567889999999999999999988753

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=120.25  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~v~~~~~l~   78 (201)
                      |++|||||||+|..+..+++.++.+|+++|+|+.+++.++++..... .++.++..++..  .+++.++||.|+......
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-cccccccccccccccccccccccceeeccccc
Confidence            56899999999999999998865689999999999999999987654 367778887664  346778999998422111


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      ..          ...+..+...++++++++|||||.+++.
T Consensus       133 ~~----------~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         133 SE----------ETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             BG----------GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cc----------ccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            00          0024467889999999999999998864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=7.4e-16  Score=121.17  Aligned_cols=111  Identities=22%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC----ceEEEEcccCCCC---CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK----EVKVLEADMLDLP---FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~----~i~~~~~d~~~~~---~~~~~~D~v~~   73 (201)
                      +.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....+..    ...+...++..+.   ....+||+|+|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  135 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence            36899999999999999999987 8999999999999999987655421    2344455543321   23468999997


Q ss_pred             c-cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 K-ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      . .+++++..        .....++..++++++.++|||||.+++...
T Consensus       136 ~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         136 LGNSFAHLPD--------SKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             CSSCGGGSCC--------TTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ecCchhhcCC--------cccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            5 35665511        111236788999999999999999988654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=8.4e-16  Score=122.86  Aligned_cols=103  Identities=22%  Similarity=0.321  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..+++.|..+|+++|.++ +++.++++...++ ..++.++.+|+.+++++..+||+|++....+.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            578999999999999999999888999999986 6677887777666 45799999999999888899999999877766


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      +.            +......++..+.++|||||.++
T Consensus       118 ~~------------~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         118 LL------------YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BS------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ec------------cchhHHHHHHHHHhccCCCeEEE
Confidence            62            33557788999999999999986

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-16  Score=122.81  Aligned_cols=110  Identities=21%  Similarity=0.210  Sum_probs=83.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-----------------------------e
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-----------------------------V   51 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-----------------------------i   51 (201)
                      |++|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++.......                             +
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV  131 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred             CCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhh
Confidence            35899999999999888877766589999999999999999876543110                             0


Q ss_pred             -EEEEcccC----CCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           52 -KVLEADML----DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        52 -~~~~~d~~----~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                       .....+..    ..+++.++||+|++..++|++.           ...++...+++++.++|||||.+++.++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-----------~~~~~~~~~l~~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----------CSLDAYRAALCNLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hcccccccccccccccccCCcccEEeehhhHHHhc-----------ccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence             11112211    1245678999999999999872           23467889999999999999999987754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=120.34  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|||+|.++..+++.|+.+|+++|.++.+...++.........++.++.+|+.+++.+..+||+|++....+.+
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~  115 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL  115 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeec
Confidence            57899999999999999999988899999999987755444433333568999999999988888899999997766655


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      .            .......++....+.|+|||+++
T Consensus       116 ~------------~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         116 L------------FESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             T------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             c------------cccccHHHHHHHHhcCCCCcEEe
Confidence            2            23456778888889999999987

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=6.2e-16  Score=119.58  Aligned_cols=102  Identities=20%  Similarity=0.303  Sum_probs=86.5

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhc---CCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLK---GYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      |++|||+|||+|.++..+++. ++. +|+++|+++++++.|++++...   ...++.+.++|+.+.++++++||.|++  
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l--  174 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL--  174 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE--
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE--
Confidence            689999999999999999987 555 9999999999999999988753   256899999999988888899999984  


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                             |.++||           .++.++.++|||||++++..++.
T Consensus       175 -------dlp~P~-----------~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         175 -------DMLAPW-----------EVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             -------ESSCGG-----------GGHHHHHHHEEEEEEEEEEESSH
T ss_pred             -------ecCCHH-----------HHHHHHHhccCCCCEEEEEeCcc
Confidence                   224554           57889999999999998876543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.3e-15  Score=121.05  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|.++..+++.|..+|+++|.++. ...+.++...++ .+++.++++|+.+++.+.+++|+|++....+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            5789999999999999999998779999999975 456666666655 45699999999999888899999998777666


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                      ++            +...+..++..+.+.|+|||.++
T Consensus       113 l~------------~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         113 LF------------YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BT------------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ec------------cHHHHHHHHHHHHhcCCCCeEEE
Confidence            52            33567889999999999999987

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=1.7e-15  Score=115.10  Aligned_cols=103  Identities=10%  Similarity=0.090  Sum_probs=82.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~   78 (201)
                      |++|||+|||+|..+..+++.++. .|+|+|+|+.+++.++++....  +++..+.+|+.... ..+..+|++++...++
T Consensus        75 G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~  152 (230)
T d1g8sa_          75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYEDVA  152 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEEeecccc
Confidence            679999999999999999998655 9999999999999999886554  57888888887643 4455667766543333


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +               ..+...++.++.+.|||||.+++...
T Consensus       153 ~---------------~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         153 Q---------------PNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             S---------------TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c---------------hHHHHHHHHHHHHhcccCceEEEEee
Confidence            2               26778899999999999999887643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=1.5e-15  Score=113.84  Aligned_cols=104  Identities=16%  Similarity=0.063  Sum_probs=79.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |++|||+|||+|..+..+++..+. +|+|+|+++.+++.++++....  +++.++.+|+.........+|.+...  ++.
T Consensus        57 g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~vd~v--~~~  132 (209)
T d1nt2a_          57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI--YQD  132 (209)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE--EEC
T ss_pred             CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCccccccccceEEEE--Eec
Confidence            579999999999999999987443 8999999999999999988765  48999999988755433433333211  111


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +            .+..+...+++++.++|||||.+++...
T Consensus       133 ~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         133 I------------AQKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             C------------CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c------------cChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            1            1225678899999999999999988653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-15  Score=116.86  Aligned_cols=107  Identities=14%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             cEEEecCCCChhhHHHHhc------CCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEE--EEcccCC------CCCCCC
Q 028957            3 SVLELGCGNSRLSEGLYND------GIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKV--LEADMLD------LPFSND   66 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~------~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~--~~~d~~~------~~~~~~   66 (201)
                      +|||+|||+|.++..++..      +.. .++++|+++.+++.+++++.... .+++.+  ...++..      .+.+.+
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            6999999999998887653      222 78999999999999999876543 344444  3333221      245678


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      +||+|++..++|++               ++..++++++.++|+|||.+++...+...
T Consensus       123 ~fD~I~~~~~l~~~---------------~d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         123 KWDFIHMIQMLYYV---------------KDIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             CEEEEEEESCGGGC---------------SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             ceeEEEEccceecC---------------CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence            99999999999877               56789999999999999999888766543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.58  E-value=1.9e-15  Score=115.97  Aligned_cols=100  Identities=20%  Similarity=0.334  Sum_probs=83.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|||+|||+|.++..+++. ++. +|+++|.++++++.|+++++..+ ..++.+..+|+.+. +++..||.|++.   
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld---  161 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD---  161 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC---
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec---
Confidence            689999999999999999986 444 99999999999999999998754 67899999998774 456789999852   


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                            .++||           .+++++.++|||||++++..++
T Consensus       162 ------~p~p~-----------~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         162 ------IPDPW-----------NHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             ------CSCGG-----------GSHHHHHHTEEEEEEEEEEESS
T ss_pred             ------CCchH-----------HHHHHHHHhcCCCceEEEEeCC
Confidence                  23443           5789999999999999876654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=7.5e-15  Score=114.02  Aligned_cols=118  Identities=14%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++|....+.++++++++|+.. +.+..+||+|+++-.+-.
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~  187 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYID  187 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBC
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhh
Confidence            357999999999999999887665 999999999999999999999888789999999876 345679999998633210


Q ss_pred             ----------eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 ----------LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                .-.++...+.....+.....++++...+.|+|||.+++..
T Consensus       188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence                      0000000000001122446789999999999999988753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=116.36  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=82.5

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--C----------------------------c
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--K----------------------------E   50 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~----------------------------~   50 (201)
                      |.+|||+|||+|.++...+.....+|+++|+++.+++.+++++.....  +                            .
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV  134 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence            579999999999887666655555999999999999999987654320  0                            0


Q ss_pred             eEEEEcccCCC------CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           51 VKVLEADMLDL------PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        51 i~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ......|+...      +...++||+|++.+++|++.           .+.++..++++++.++|||||.+++...
T Consensus       135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----------~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----------PDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hccccccccCCCccccCCcCcCccCeeeeHHHHHHHc-----------cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence            12344555432      23456899999999999883           2346789999999999999999998764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.56  E-value=3.6e-14  Score=101.10  Aligned_cols=104  Identities=16%  Similarity=0.262  Sum_probs=83.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-CCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-PFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~   78 (201)
                      |++|||+|||+|.++.+++.+|..+|+++|.++.+++.+++++...+. ++++++++|+... ....++||+|++.    
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D----   90 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD----   90 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC----
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec----
Confidence            579999999999999999999888999999999999999999988875 4599999998763 3446789999862    


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEec
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSF  120 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~  120 (201)
                             +||     ........++.+.  +.|+|+|.+++...
T Consensus        91 -------PPy-----~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          91 -------PPY-----AKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             -------CSS-----HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             -------hhh-----ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence                   333     3455566777664  46999999887543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.5e-15  Score=110.85  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCCCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~v~~   73 (201)
                      |++|||+|||+|+.+..+++. ++. +|+++|.++++++.+++++...+     ..++.+..+|+.....+.++||+|++
T Consensus        77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~  156 (224)
T d1i1na_          77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV  156 (224)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhh
Confidence            579999999999999999886 444 99999999999999999987544     35789999999877666789999999


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ...++.+                     .+.+.+.|||||++++..
T Consensus       157 ~~~~~~i---------------------p~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         157 GAAAPVV---------------------PQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CSBBSSC---------------------CHHHHHTEEEEEEEEEEE
T ss_pred             hcchhhc---------------------CHHHHhhcCCCcEEEEEE
Confidence            8777544                     134678899999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.55  E-value=1.3e-14  Score=109.56  Aligned_cols=95  Identities=19%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |++|||+|||+|+++..+++.+. +|+++|.++++.+.+++++...  .++.++.+|........++||+|++....+.+
T Consensus        71 g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~i  147 (224)
T d1vbfa_          71 GQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (224)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             cceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhhHHHHHhhcchhhh
Confidence            57899999999999999998865 9999999999999999987654  58999999987644445789999987776543


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                           .+.+.+.|+|||++++..
T Consensus       148 ---------------------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         148 ---------------------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             ---------------------CHHHHHTEEEEEEEEEEE
T ss_pred             ---------------------hHHHHHhcCCCCEEEEEE
Confidence                                 134567899999998753

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=1.6e-14  Score=114.72  Aligned_cols=111  Identities=22%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~~   76 (201)
                      |++|||++||+|.++..++..+ .+|+++|+|+.+++.+++++..+++.+++++++|+.+.    .....+||+|++.. 
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp-  223 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP-  223 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC-
T ss_pred             CCeeeccCCCCcHHHHHHHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC-
Confidence            4689999999999999887644 49999999999999999999999988999999998763    23457899999742 


Q ss_pred             cceeeecCCCCCC-CCC----ccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           77 MEVLFVNSGDPWN-PQP----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        77 l~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                |.. +..    ........++..+.++|+|||.+++.+++..
T Consensus       224 ----------P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~  265 (318)
T d1wxxa2         224 ----------PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  265 (318)
T ss_dssp             ----------CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ----------CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence                      211 111    1223456889999999999999998877653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=3.8e-14  Score=112.86  Aligned_cols=112  Identities=18%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC----CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL----PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~~D~v~~~~   75 (201)
                      |++|||+|||+|.++..++..|..+|+++|+++.+++.+++|+..+++ ++++++++|+.+.    .....+||+|++. 
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D-  224 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD-  224 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC-
T ss_pred             CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC-
Confidence            579999999999999999998877999999999999999999999986 5789999998752    2345789999973 


Q ss_pred             ccceeeecCCCCCCC-CCcc----HHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           76 TMEVLFVNSGDPWNP-QPET----VTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                +|... ....    .....+++..+.++|+|||.+++.+++..
T Consensus       225 ----------pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         225 ----------PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             ----------CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             ----------CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence                      22221 1111    22356788999999999999998887654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=2.4e-14  Score=110.92  Aligned_cols=100  Identities=17%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|||+|||+|.++..+++. ++. +|+++|+++++++.|+++++..+. .++.+...|+.. .+....+|.|+.    
T Consensus       104 G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~~----  178 (266)
T d1o54a_         104 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALFL----  178 (266)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEEE----
T ss_pred             CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeEe----
Confidence            689999999999999999986 444 999999999999999999998874 567888888644 355677888873    


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                           +.++|           .++++++.++|||||++++..++
T Consensus       179 -----d~p~p-----------~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         179 -----DVPDP-----------WNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             -----CCSCG-----------GGTHHHHHHHEEEEEEEEEEESS
T ss_pred             -----cCCCH-----------HHHHHHHHhhcCCCCEEEEEeCc
Confidence                 22333           36899999999999999877654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=114.13  Aligned_cols=103  Identities=12%  Similarity=0.058  Sum_probs=80.8

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhc---------CCCceEEEEcccCCCCCCCCc--e
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK---------GYKEVKVLEADMLDLPFSNDC--F   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~---------~~~~i~~~~~d~~~~~~~~~~--~   68 (201)
                      +++|||+|||+|.++..++.. +..+++|+|+++.+++.|+++....         ...++.++++|+.+.++.+..  +
T Consensus       152 ~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~a  231 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT  231 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHC
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcc
Confidence            478999999999999998876 4448999999999999988765432         235799999999887654443  4


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |+|+++...+                .++..+.+.++.+.|||||+++...
T Consensus       232 dvi~~~~~~f----------------~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         232 SVIFVNNFAF----------------GPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             SEEEECCTTT----------------CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eEEEEcceec----------------chHHHHHHHHHHHhCCCCcEEEEec
Confidence            6777654332                2677889999999999999998654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.6e-14  Score=111.54  Aligned_cols=101  Identities=18%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcC-----------CCceEEEEcccCCCC--CCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKG-----------YKEVKVLEADMLDLP--FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~~--~~~   65 (201)
                      |++|||+|||+|.++..+++. ++. +|+++|+++++++.|+++++..+           ..++.+..+|+....  .+.
T Consensus        99 G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~  178 (324)
T d2b25a1          99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS  178 (324)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCC
Confidence            689999999999999999987 554 99999999999999999987431           357899999987643  445


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..||.|+.         |.++||           .++.++.++|||||++++..++
T Consensus       179 ~~fD~V~L---------D~p~P~-----------~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         179 LTFDAVAL---------DMLNPH-----------VTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             --EEEEEE---------CSSSTT-----------TTHHHHGGGEEEEEEEEEEESS
T ss_pred             CCcceEee---------cCcCHH-----------HHHHHHHHhccCCCEEEEEeCC
Confidence            67888873         445666           3788999999999998876654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=9e-14  Score=105.20  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=80.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D~v~~~~   75 (201)
                      |++|||+|||+|..+..+++. |+. +|+++|+++.+++.++++.+..  +++..+..|+...   +.....+|+|++..
T Consensus        74 G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~  151 (227)
T d1g8aa_          74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEEEEEEc
Confidence            689999999999999999987 554 9999999999999999887654  4788888888653   23346788877531


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      .                 +......+++++.+.|||||.+++...
T Consensus       152 ~-----------------~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         152 A-----------------QPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             C-----------------STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-----------------ccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            1                 225667899999999999999887654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.9e-13  Score=97.54  Aligned_cols=103  Identities=12%  Similarity=0.148  Sum_probs=83.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-CCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|||++||+|.++.+++.+|+.+|+++|.++.+++.+++++...+..+..++..|+... .....+||+|++      
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~------  117 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV------  117 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE------
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE------
Confidence            5789999999999999999999989999999999999999999887777899999998753 344678999996      


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~  119 (201)
                           ++||.     .....+++..+.+  .|+++|.+++..
T Consensus       118 -----DPPY~-----~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 -----DPPFR-----RGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             -----CCSSS-----TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -----cCccc-----cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence                 35553     2345566666654  699999888754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.47  E-value=9.3e-14  Score=104.22  Aligned_cols=98  Identities=23%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      |.+|||+|||+|+.+..++.....+|+++|.++++.+.+++++...+..|+.++++|........++||.|++......+
T Consensus        79 g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i  158 (215)
T d1jg1a_          79 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI  158 (215)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred             cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccC
Confidence            57999999999999999987622379999999999999999999999899999999998765557889999988777544


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                     +      ..+.+.|+|||++++..
T Consensus       159 ---------------p------~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         159 ---------------P------EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             ---------------C------HHHHHTEEEEEEEEEEE
T ss_pred             ---------------C------HHHHHhcCCCCEEEEEE
Confidence                           1      23567799999998653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.44  E-value=2.9e-13  Score=107.28  Aligned_cols=112  Identities=16%  Similarity=0.150  Sum_probs=89.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~----~~~~~~~D~v~~~   74 (201)
                      |++|||++||+|.++..++..|..+|+++|+++.+++.+++|+..++.  .+++++++|+.+.    .....+||+|++.
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D  224 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID  224 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence            679999999999999998888877999999999999999999988875  4689999999752    1234689999973


Q ss_pred             cccceeeecCCCCCC-C----CCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWN-P----QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                                 +|-. +    ......+..++++.+.++|+|||.+++.+++..
T Consensus       225 -----------PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         225 -----------PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             -----------CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             -----------ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence                       2211 0    112334577899999999999999998877643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.8e-13  Score=105.67  Aligned_cols=100  Identities=13%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      |.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++++.+++. ++.++++|+.++.. .+.||.|+++..   
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p---  183 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV---  183 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC---
T ss_pred             ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC---
Confidence            5789999999999999999887669999999999999999999998864 58999999988643 478999986321   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                      .....++..+.+.|++||.+.+..+
T Consensus       184 ----------------~~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         184 ----------------VRTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             ----------------SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------------CchHHHHHHHHhhcCCCCEEEEEec
Confidence                            1123567778889999999876543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.41  E-value=2.5e-12  Score=93.98  Aligned_cols=103  Identities=17%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC----CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL----PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~~D~v~~~~   75 (201)
                      |++|||++||+|.++.+++.+|..+|+++|.++.+++.+++++...+. .++.++++|+.+.    .....+||+|++  
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl--  119 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL--  119 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE--
T ss_pred             CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe--
Confidence            578999999999999999999998999999999999999999987764 3789999998752    123457999996  


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEe
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVS  119 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~  119 (201)
                               ++||     ........++.+.  ..|+++|.+++..
T Consensus       120 ---------DPPY-----~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         120 ---------DPPY-----AKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ---------CCCG-----GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ---------chhh-----hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence                     3444     3344566777765  4699999887654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=1.4e-12  Score=102.47  Aligned_cols=113  Identities=18%  Similarity=0.184  Sum_probs=85.6

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCC----CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      |.+|||++||+|.++..++..|. +|+++|.|+.+++.+++|+..++..  +++++++|+.+.-    ....+||+|++.
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence            46899999999999999998887 8999999999999999999887743  5899999997631    234689999973


Q ss_pred             cccceeeecCCCCCC-CCC-----ccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957           75 ATMEVLFVNSGDPWN-PQP-----ETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF  125 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~-~~~-----~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  125 (201)
                                 +|.+ ..+     .-......+++.+.++|+|||.+++.+.+....
T Consensus       212 -----------PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~  257 (309)
T d2igta1         212 -----------PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA  257 (309)
T ss_dssp             -----------CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS
T ss_pred             -----------CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCC
Confidence                       2211 000     112345677788899999999877666555443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=7.2e-13  Score=99.90  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=78.0

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CC---CeEEEEECCHHHHHHHHHHHhhc-----CCCceEEEEcccCCCCCCCCce
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GI---TAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDLPFSNDCF   68 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~---~~v~~vD~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~   68 (201)
                      +.+|||+|||+|+.+..+++.    +.   .+|+++|.++++++.+++++...     +..++.++.+|......+.++|
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~f  160 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPY  160 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSE
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccce
Confidence            579999999999999988775    21   28999999999999998876432     3458999999998765566789


Q ss_pred             eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |.|++...++.+               +      +.+.+.|+|||++++..
T Consensus       161 D~Iiv~~a~~~~---------------p------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         161 NAIHVGAAAPDT---------------P------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             EEEEECSCBSSC---------------C------HHHHHTEEEEEEEEEEE
T ss_pred             eeEEEEeechhc---------------h------HHHHHhcCCCcEEEEEE
Confidence            999998777543               1      24678999999998754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=2.4e-12  Score=95.00  Aligned_cols=69  Identities=26%  Similarity=0.396  Sum_probs=60.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++|||+|||+|.++..++..++.+|+++|+++.+++.++++.     .++.++++|+..++   ++||+|+++-.+
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC---CcceEEEeCccc
Confidence            6899999999999999998888879999999999999999875     36799999998763   689999986443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=5.9e-12  Score=93.43  Aligned_cols=72  Identities=28%  Similarity=0.362  Sum_probs=62.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      |++|||+|||+|.++..++..|..+|+++|+++.+++.+++++...+. +..++.+|+..+   .++||+|+++-.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~---~~~fD~Vi~nPP  118 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF---NSRVDIVIMNPP  118 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC---CCCCSEEEECCC
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh---CCcCcEEEEcCc
Confidence            579999999999999999888877999999999999999999887774 678999998775   467999998543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=6.7e-12  Score=102.00  Aligned_cols=103  Identities=14%  Similarity=0.068  Sum_probs=73.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC---------CCceEE-EEcccCCCC---CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---------YKEVKV-LEADMLDLP---FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~---------~~~i~~-~~~d~~~~~---~~~~   66 (201)
                      |++|||||||+|..+..+|.. +..+++|+|+++.+++.|+++....+         ...+.+ ..++....+   ..-.
T Consensus       217 gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~  296 (406)
T d1u2za_         217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP  296 (406)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred             CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccc
Confidence            578999999999999999876 55589999999999999998865421         112233 233332211   1113


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .+|+|+++..+                ..+++.+.+.++.+.|||||+++...
T Consensus       297 ~adVV~inn~~----------------f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         297 QCDVILVNNFL----------------FDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             GCSEEEECCTT----------------CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cceEEEEeccc----------------CchHHHHHHHHHHHhcCCCcEEEEec
Confidence            56788865432                22678899999999999999988654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1e-11  Score=89.87  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC----CCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~v~~~~~   76 (201)
                      |.+|||+|||+|.++.+++.+|. +++++|.++.+++.+++++...+.. .++...++..    ......+||+|++.  
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If~D--  117 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAFMA--  117 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEEEC--
T ss_pred             CCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeEEc--
Confidence            57899999999999999999987 8999999999999999999887753 2444444432    12345689999863  


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                               +||-.+  ..+...++++  ...|+|||.+++..
T Consensus       118 ---------PPY~~~--~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         118 ---------PPYAMD--LAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             ---------CCTTSC--TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             ---------cccccC--HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence                     444321  1122333333  35789999887654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=7.5e-12  Score=92.09  Aligned_cols=116  Identities=14%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~   74 (201)
                      +..+||++||+|+.+..+++..+. +|+|+|.++++++.+++++...+ .++.+++++..++.     +..+++|.|+..
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D  102 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGILMD  102 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence            468999999999999999987544 99999999999999999987755 47999999876542     445789998854


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      ..+...-.+      ...+......+.+..+.++|+|||+++++++...
T Consensus       103 lGvSs~Qld------~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2         103 LGVSTYQLK------GENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             CSCCHHHHH------TSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             cchhHhhhh------hhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            322100000      0112445678999999999999999999887643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=9.8e-11  Score=85.43  Aligned_cols=104  Identities=18%  Similarity=0.275  Sum_probs=79.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCC---CCCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDL---PFSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~---~~~~~~~D~v~~~~   75 (201)
                      +.+|||+.||||.++.+++.+|..+|+.+|.+..+++.++++++..+..  ...+...|+.+.   .....+||+|++  
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl--  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL--  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE--
T ss_pred             cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe--
Confidence            5789999999999999999999999999999999999999999877643  356666765432   233457999996  


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEec
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSF  120 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~~  120 (201)
                               ++||.     .....++++.+..  .|+++|.+++...
T Consensus       122 ---------DPPY~-----~~~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         122 ---------DPPFH-----FNLAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             ---------CCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ---------chhHh-----hhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence                     45553     2445667777654  7899998887543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.25  E-value=1.6e-11  Score=93.70  Aligned_cols=97  Identities=23%  Similarity=0.300  Sum_probs=79.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|||+|||+|.++..++++.+. +++..|+ +++++.+      ...++++++.+|+.+ +.+  ..|++++..++|.+
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNW  152 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCccc-ccc--cceEEEEehhhhhC
Confidence            58999999999999999999777 9999998 4443211      124689999999876 343  45999999999876


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                   +.++..++|+++++.|+|||++++.+..
T Consensus       153 -------------~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         153 -------------SDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             -------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -------------CHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence                         5678999999999999999999998753

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=8.6e-11  Score=87.81  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v   71 (201)
                      +++|||+|||+|..+..+++...  .+++++|.++++.+.+++++...+. ++++++.+|..+. +     ...++||+|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i  136 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  136 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence            47899999999999999988632  2999999999999999999988775 4699999998753 1     345679999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      +....-                ........+.+..++|+|||.+++
T Consensus       137 fiD~~~----------------~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         137 FLDHWK----------------DRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EECSCG----------------GGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eecccc----------------cccccHHHHHHHhCccCCCcEEEE
Confidence            863211                111223456777889999998775

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.14  E-value=4.9e-11  Score=90.91  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=77.9

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|+|+|||+|.++..++++.+. +++..|+ +++++.+.      ..++++++.+|+++ +.+  .+|++++..++|.+
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw  151 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFT-SIP--NADAVLLKYILHNW  151 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCccc-CCC--CCcEEEEEeecccC
Confidence            57999999999999999999776 9999998 44443321      23589999999986 332  57999999999886


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCC---cEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~~~~~  120 (201)
                                   +.++..++|+++++.|+||   |++++.+.
T Consensus       152 -------------~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         152 -------------TDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             -------------CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             -------------ChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence                         5688899999999999998   77777654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.13  E-value=3.6e-10  Score=83.01  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=72.3

Q ss_pred             CcEEEecCCCChhhHHH----Hhc----CCC-eEEEEECCHHHHHHHHHHH------------------hhcC-------
Q 028957            2 TSVLELGCGNSRLSEGL----YND----GIT-AITCIDLSAVAVEKMQERL------------------LLKG-------   47 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l----~~~----~~~-~v~~vD~~~~~~~~~~~~~------------------~~~~-------   47 (201)
                      .+||++|||+|.-...+    ...    +.. +++|+|+++.+++.|++..                  ....       
T Consensus        26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~  105 (193)
T d1af7a2          26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  105 (193)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcccee
Confidence            37999999999743333    222    222 7999999999999987531                  0000       


Q ss_pred             ------CCceEEEEcccCCC-CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           48 ------YKEVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        48 ------~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                            ...+.+...+.... +.+.+.||+|+|.+++.++             +.+...++++++++.|+|||.|++-
T Consensus       106 ~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-------------~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         106 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-------------DKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-------------CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-------------CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  01233444444332 2345789999999999876             5577889999999999999988753

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=6.2e-10  Score=85.74  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-CCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-PFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~~~~~~~D~v~~~~   75 (201)
                      .+|+|+|||+|..+..++.....+|+++|+|+.+++.|++|....+.. ++.+...|+... +...++||+|++|-
T Consensus       112 ~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP  187 (271)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred             cEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence            479999999999999888764349999999999999999999988753 567788887763 22346899999873

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.4e-10  Score=86.91  Aligned_cols=101  Identities=16%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v   71 (201)
                      +++|||+|||+|.-+..++..-+ . +++++|.+++..+.+++++...+. ++++++.+|+... +     ...++||+|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            47999999999999999998743 2 999999999999999999988774 5699999997642 1     235689999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +...                  .+......++.+.+.|+|||.+++-.
T Consensus       140 fiD~------------------dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         140 VVDA------------------DKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             EECS------------------CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEeC------------------CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            9632                  23556778889999999999998743

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.2e-10  Score=84.59  Aligned_cols=118  Identities=10%  Similarity=0.060  Sum_probs=79.0

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC------CCCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL------PFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~------~~~~~~~D~v~~   73 (201)
                      .++||+|||+|-++..++...+. +++|+|+++++++.|+++...+++ .++.++..+....      ....++||+|+|
T Consensus        63 ~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivs  142 (250)
T d2h00a1          63 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMC  142 (250)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred             ceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEe
Confidence            47999999999999999887544 999999999999999999998874 4577777655432      123568999999


Q ss_pred             ccccceeeecC----------CCCCC--CCCc--------cHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNS----------GDPWN--PQPE--------TVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~----------~~~~~--~~~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +-.++..--..          ..|-.  ....        ......+++++....++..|.+....
T Consensus       143 NPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i  208 (250)
T d2h00a1         143 NPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML  208 (250)
T ss_dssp             CCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred             cCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence            86654210000          00000  0000        01136677888888899989876443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.2e-09  Score=79.42  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=84.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|+|+|+|.|.-+..++-..+. +++.+|.+..-+...++.....+++++.+++..+..... ..+||+|++.++   
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~---  141 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS---
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh---
Confidence            368999999999999999887776 999999999999999998888888899999999887643 468999998654   


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                      .....+++-+.+.++++|.+++.-
T Consensus       142 ----------------~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 ----------------ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----------------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----------------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence                            345788888999999999988765

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.98  E-value=9.8e-10  Score=83.49  Aligned_cols=96  Identities=20%  Similarity=0.253  Sum_probs=76.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|+|+|||+|.++..++++.+. ++++.|+.+. ++.+      ...+++.++.+|.++ +.|.  .|+++...++|..
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~  152 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDW  152 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEecccccc-cCCC--cceEEEEEEeecC
Confidence            57999999999999999999777 9999998542 2211      123589999999876 3443  5778877777764


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                   +.++..++++++++.|+|||++++.+.
T Consensus       153 -------------~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         153 -------------SDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             -------------CHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             -------------CHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence                         557899999999999999999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=6.4e-10  Score=87.44  Aligned_cols=110  Identities=17%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc-----CCCceEEEEcccCCC-CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v~~   73 (201)
                      +++||.+|.|.|..+..+++.... +|+++|+++++++.+++.+...     .-++++++.+|+... ....++||+|++
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence            478999999999999999887543 9999999999999999987432     135899999999863 233568999995


Q ss_pred             ccccceeeecCCCCCCCC-CccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQ-PETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..         .+||... +...--...+++.+++.|+|||.+++..
T Consensus       158 D~---------~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         158 DL---------TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EC---------CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eC---------CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            32         2333211 1111123689999999999999988643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.95  E-value=3.8e-09  Score=79.72  Aligned_cols=74  Identities=16%  Similarity=0.323  Sum_probs=61.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +++|||+|||+|.+|..+++.+. +|+++|+++.+++.+++++...  +++.++.+|+.+.+++......|+++-.+
T Consensus        22 ~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~~~~~~vv~NLPY   95 (235)
T d1qama_          22 HDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSYKIFGNIPY   95 (235)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCCEEEEECCG
T ss_pred             CCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccccccceeeeeehh
Confidence            57899999999999999999866 9999999999999999887654  58999999999887665554566665443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=6.9e-10  Score=83.40  Aligned_cols=100  Identities=11%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~------~~~~~~D~   70 (201)
                      +++|||+|+++|+-+..++...+ . +++.+|.+++..+.|++++...+. ++++++.+++... +      ...++||+
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            47899999999999999987633 2 999999999999999999988874 4699999998652 1      12467999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      |+..    +              .+......++.+.+.|+|||.+++-
T Consensus       140 iFiD----a--------------~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         140 IFVD----A--------------DKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEEC----S--------------CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEec----c--------------chhhhHHHHHHHHhhcCCCcEEEEc
Confidence            9952    1              2245778888999999999998864

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.91  E-value=9.5e-10  Score=85.07  Aligned_cols=108  Identities=18%  Similarity=0.310  Sum_probs=79.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc----------CCCceEEEEcccCCCCCCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK----------GYKEVKVLEADMLDLPFSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~----------~~~~i~~~~~d~~~~~~~~~~~D~   70 (201)
                      +++||.+|+|.|..+..+++....+|+++|+++.+++.+++.+...          .-++++++.+|+...--..++||+
T Consensus        73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDv  152 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDV  152 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEE
T ss_pred             CceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCE
Confidence            4789999999999999988876669999999999999999866422          136899999998753223468999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      |++...         +|..+  ...-....+++.+++.|+|+|.+++..
T Consensus       153 Ii~D~~---------~~~~~--~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         153 IIADST---------DPVGP--AKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEECC---------CCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeCC---------CCCCC--cccccCHHHHHhhHhhcCCCceEEEec
Confidence            995321         22211  011113689999999999999988754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=3.7e-09  Score=83.13  Aligned_cols=122  Identities=19%  Similarity=0.207  Sum_probs=86.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc--
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT--   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~--   76 (201)
                      |.+|||++||+|+-+..++....  ..+++.|.++..++.+++++...+..++.....|...++.....||.|++...  
T Consensus       117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCS  196 (313)
T d1ixka_         117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT  196 (313)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred             cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccccc
Confidence            57899999999999988877633  28999999999999999999998888888888887766655678999995211  


Q ss_pred             -cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 -MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 -l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                       ...+-.+....|...++....    ..+++.+..+.|||||+++..+++-
T Consensus       197 g~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         197 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence             111111222233322222222    4578889999999999999888764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=3.9e-09  Score=82.11  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=80.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +++||-+|.|.|..+.++++... .+|+++|+++.+++.+++.+...    .-++++++.+|+.. +.-..++||+|++.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            47999999999999999988754 48999999999999999876432    13689999999876 33345789999963


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         +|+...+ ..--...+++.+++.|+|||.++....+
T Consensus       170 ~~---------dp~~~~~-~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         170 ST---------DPTAGQG-GHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             C--------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CC---------CCCcCch-hhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            21         2221100 0111368999999999999998876543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.1e-08  Score=76.29  Aligned_cols=121  Identities=13%  Similarity=0.060  Sum_probs=79.9

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~~   75 (201)
                      |.+|||++||+|+-+..++.. +. ..++++|+++..++.+++++...++.++.+...|...+...   ...||.|++..
T Consensus        95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~Da  174 (293)
T d2b9ea1          95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP  174 (293)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred             cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecC
Confidence            578999999999999888765 22 38999999999999999999999998999999998765422   25699999532


Q ss_pred             c---cceeeecCCCCCCCCCc--cHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 T---MEVLFVNSGDPWNPQPE--TVT----KVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~---l~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .   ...+--+.+..|...+.  ...    ...+++.... .++|||+++..+++-
T Consensus       175 PCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         175 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             CCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             cccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            1   11111111222321111  111    1244566666 479999999888764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.3e-08  Score=79.78  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=62.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      +.+|||+-||.|.++..+++.+. +|+|+|.++.+++.|+++...+++.++.++.+|+...-    ....++|+|+.
T Consensus       213 ~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            36799999999999999988765 99999999999999999999999999999999987632    22456899985

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=1.3e-08  Score=80.36  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             CcEEEecCCCChhhHHHHhc----C-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957            2 TSVLELGCGNSRLSEGLYND----G-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~----~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   75 (201)
                      .+|||.|||+|.++..+...    . .. .++|+|+++.+++.|+.+....+. ......+|.... ....+||+|+++-
T Consensus       119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-~~~~~fD~vi~NP  196 (328)
T d2f8la1         119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLAN-LLVDPVDVVISDL  196 (328)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred             CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhccccccc-cccccccccccCC
Confidence            47999999999999888653    2 22 899999999999999988776653 566777776542 3457899999975


Q ss_pred             ccceeeecCCCCC---CCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           76 TMEVLFVNSGDPW---NPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        76 ~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .+.........+.   ............+++.+.+.|+|||++.++.+.
T Consensus       197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            5532200000000   000011112345799999999999998877653

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6e-09  Score=80.83  Aligned_cols=122  Identities=12%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccc--
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKAT--   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~--   76 (201)
                      |.+|||++||.|+-+..++..+.. .++++|.++..++.+++++...+.+++.....|..... .....||.|++...  
T Consensus       103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCS  182 (284)
T d1sqga2         103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCS  182 (284)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCC
T ss_pred             cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecccc
Confidence            578999999999999999887554 89999999999999999999998766666555543221 23467999994211  


Q ss_pred             -cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 -MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 -l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                       ...+--+.+..|.-.+.....    ..++|.+..+.|+|||+++..+++-
T Consensus       183 g~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         183 ATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             CGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             ccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence             111111111111112222222    4688999999999999999988764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.79  E-value=6e-10  Score=84.70  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=63.3

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +++|||+|||+|.+|..+++.+. +|+++|+++.+++.+++++...  +++.++.+|+.+++++....+.|+++..++
T Consensus        30 ~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~--~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          30 TDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN--TRVTLIHQDILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC--SEEEECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred             CCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc--cchhhhhhhhhccccccceeeeEeeeeehh
Confidence            35899999999999999999876 9999999999988887766443  589999999999888777778888776553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=1.9e-08  Score=77.42  Aligned_cols=109  Identities=21%  Similarity=0.327  Sum_probs=81.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCC-CCCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLD-LPFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~-~~~~~~~~D~v~~~   74 (201)
                      +++||-+|.|.|..+..+++.. ..+++.+|+++++++.+++.+...    .-++++++.+|+.. +.-..++||+|+..
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D  155 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence            4789999999999999999874 349999999999999999976431    23689999999875 23345789999964


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..         +|+.... + --.+.+++.+.+.|+|+|.++....
T Consensus       156 ~~---------~p~~~~~-~-L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         156 ST---------EPVGPAV-N-LFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             CS---------SCCSCCC-C-CSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             CC---------CCCCcch-h-hccHHHHHHHHhhcCCCceEEEecC
Confidence            21         2222111 1 1246899999999999999887643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=2.7e-08  Score=74.91  Aligned_cols=99  Identities=13%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---CCCceeEEEecccc
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATM   77 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~~~l   77 (201)
                      .+|+|+|+|.|.-+..++-..+. +++.+|.+..-+...+......+++++.++...++....   ...+||+|++.++ 
T Consensus        72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv-  150 (239)
T d1xdza_          72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV-  150 (239)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC-
T ss_pred             CeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh-
Confidence            57999999999999999876555 999999999999999888888888899999988775431   2368999998654 


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                        ..+..+++-+...++++|.+++.-
T Consensus       151 ------------------a~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         151 ------------------ARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             ------------------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ------------------hCHHHHHHHHhhhcccCCEEEEEC
Confidence                              356789999999999999988764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-08  Score=78.56  Aligned_cols=110  Identities=16%  Similarity=0.252  Sum_probs=80.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +++||-+|.|.|..+..+++.. ..+++.+|+++++++.+++.+...    .-++++++.+|+... ....++||+|++.
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence            5789999999999999998874 349999999999999999876431    236899999998752 2345789999963


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         +|... + ..--...+++.+++.|+|||.+++...+
T Consensus       159 ~~---------~p~~~-~-~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         159 SS---------DPMGP-A-ESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             CC----------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CC---------CCCCc-c-cccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            21         12110 0 1122457899999999999999876543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.71  E-value=1.6e-08  Score=78.98  Aligned_cols=110  Identities=18%  Similarity=0.269  Sum_probs=78.8

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~   74 (201)
                      +++||-+|.|.|..+.++++... .+|+++|+++++++.+++.+....    -++++++.+|+... ....++||+|+..
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D  186 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  186 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence            47899999999999999998754 499999999999999999775422    36899999998763 2335789999963


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         +|..+  ...--...+++.+.+.|+|||.++....+
T Consensus       187 ~~---------dp~~~--~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         187 SS---------DPVGP--AESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             CC------------------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             CC---------CCCCc--chhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            21         22111  01123468899999999999999876433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=3.7e-08  Score=76.40  Aligned_cols=110  Identities=17%  Similarity=0.267  Sum_probs=82.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCCC--CCCCCceeEEEe
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL--PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~--~~~~~~~D~v~~   73 (201)
                      +++||-+|.|.|..+.++++... .+++++|+++++++.+++.+...    .-++++++.+|+...  ..+.++||+|+.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~  160 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  160 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence            47899999999999999988744 48999999999999999876432    136899999998753  234568999995


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ..         .+|+..  ...--...+++.+++.|+|||.++....+
T Consensus       161 D~---------~dp~~~--~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         161 DS---------SDPIGP--AKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             CC---------CCTTSG--GGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cC---------CCCCCc--chhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            32         123211  11122478999999999999999986543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=2.9e-08  Score=71.83  Aligned_cols=111  Identities=14%  Similarity=0.283  Sum_probs=81.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEecc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIEKA   75 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~   75 (201)
                      |..++|.++|.|+.+..+++... +|+|+|.++++++.+++..    .+++.+++.+...+.     ...+.+|.|+...
T Consensus        19 g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL   93 (182)
T d1wg8a2          19 GGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGILADL   93 (182)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred             CCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence            56899999999999999999865 9999999999999987642    247888888876542     3346789988643


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      .+...-.+      ...+........|......|++||.+.+.++..
T Consensus        94 GvSs~qld------~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          94 GVSSFHLD------DPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             SCCHHHHH------CGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             cCCHHHhh------cchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            22111000      011233446678899999999999999988754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.8e-08  Score=72.83  Aligned_cols=109  Identities=24%  Similarity=0.286  Sum_probs=74.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      +.+||||||++|+++..+++. +. ..++++|+.+           ....+++.++++|..+..        ...+++|+
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-----------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~Dl   91 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeeccc-----------ccccCCceEeecccccchhhhhhhhhccCcceeE
Confidence            468999999999999988875 33 3899999854           223568899999986532        23568999


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH  124 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  124 (201)
                      |++.+..+..    +++..+.....+-....+.-+.++|++||.+++-.+....
T Consensus        92 VlSD~ap~~s----g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~  141 (180)
T d1ej0a_          92 VMSDMAPNMS----GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             EEECCCCCCC----SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             EEecccchhc----ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence            9987665432    1111111111112345667778899999999998887544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.58  E-value=3.3e-08  Score=73.21  Aligned_cols=111  Identities=19%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      +.+|||.|||+|.++..+.+...  ..++++|+++..+..         ......+++|..... ....||+++++..+.
T Consensus        20 ~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~-~~~~fd~ii~npP~~   89 (223)
T d2ih2a1          20 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWE-PGEAFDLILGNPPYG   89 (223)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCC-CSSCEEEEEECCCCC
T ss_pred             cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccc-cccccceecccCccc
Confidence            57899999999999888876522  289999998764322         224577888876643 347899999876654


Q ss_pred             eeeecCCCCCCCC--------------CccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           79 VLFVNSGDPWNPQ--------------PETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        79 ~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ........+-...              .....-...+++...+.|++||++.++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          90 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            3321111110000              001112356788999999999998887653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.1e-07  Score=69.30  Aligned_cols=74  Identities=20%  Similarity=0.343  Sum_probs=61.2

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +++|||+|+|+|.+|..+++.+. +|+++|+++.+++.+++.+.... ..++.++.+|+....++  .++.|+++-.+
T Consensus        22 ~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NLPY   96 (278)
T d1zq9a1          22 TDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY   96 (278)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG
T ss_pred             CCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcchHH
Confidence            46899999999999999999876 99999999999999999886654 35799999999876654  34677776443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=2.1e-07  Score=70.56  Aligned_cols=59  Identities=19%  Similarity=0.288  Sum_probs=51.0

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP   62 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~   62 (201)
                      ++.|||+|||+|.+|..+++.+. +|+++|+++.+++.+++.....  +++.++.+|+.+.+
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~   80 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFN   80 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCC
T ss_pred             CCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhc
Confidence            47899999999999999998865 8999999999999998755433  48999999998764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=7.9e-07  Score=71.08  Aligned_cols=100  Identities=19%  Similarity=0.147  Sum_probs=74.0

Q ss_pred             CCcEEEecCCCChhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCc---------------eEEEEcccCCCC-C
Q 028957            1 MTSVLELGCGNSRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKE---------------VKVLEADMLDLP-F   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~---------------i~~~~~d~~~~~-~   63 (201)
                      +.+|||..||+|..++..+. .+..+|++.|+|+..++.+++|++.++..+               +.+.+.|+..+. .
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            46899999999999997665 455599999999999999999998775432               455666654321 1


Q ss_pred             CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ....||+|..            ||+-       ....+++...+.++.||.+.+..
T Consensus       126 ~~~~fDvIDi------------DPfG-------s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         126 RHRYFHFIDL------------DPFG-------SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             STTCEEEEEE------------CCSS-------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCcCCcccC------------CCCC-------CcHHHHHHHHHHhccCCEEEEEe
Confidence            2457999885            2321       22468888888899999988764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.17  E-value=5.4e-06  Score=67.24  Aligned_cols=118  Identities=19%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcC----C----------CeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCCCC
Q 028957            1 MTSVLELGCGNSRLSEGLYNDG----I----------TAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLPFS   64 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~----~----------~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~~~   64 (201)
                      +.+|+|.+||+|.+...+.+..    .          ..+.|+|+++.+...++.++.-.+.  ....+...|.... .+
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~-~~  241 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK-EP  241 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS-CC
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh-hc
Confidence            4689999999999998887641    0          1599999999999999988766553  3456677776643 34


Q ss_pred             CCceeEEEeccccceeeecCCCCCCC---CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           65 NDCFDVVIEKATMEVLFVNSGDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        65 ~~~~D~v~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..+||+|+++-.+....... ..+..   ..........++..+...|++||++.++.+
T Consensus       242 ~~~fD~Ii~NPPfg~~~~~~-~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         242 STLVDVILANPPFGTRPAGS-VDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             SSCEEEEEECCCSSCCCTTC-CCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccceEEecCCCCCCcccc-chhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            57899999986663221000 00000   001112245699999999999999887654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.14  E-value=1.4e-06  Score=65.03  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEE
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v   71 (201)
                      |++|||+|++.|.-+..++..    +.. +++++|+++......     ....++++++++|..+..    +....+|.|
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI  155 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPLI  155 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCEE
Confidence            578999999999877666532    333 999999976433221     112368999999976532    334457777


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +.-.. |.               ......-+ .+...|++||++++.+.
T Consensus       156 fID~~-H~---------------~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         156 FIDNA-HA---------------NTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             EEESS-CS---------------SHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             EEcCC-cc---------------hHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            64322 21               12222223 35689999999987653

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.88  E-value=3.4e-05  Score=57.81  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---------CCceEEEEcccCC-CCCCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---------YKEVKVLEADMLD-LPFSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---------~~~i~~~~~d~~~-~~~~~~~~D~v   71 (201)
                      .+|||+.||.|..+..++..|. +|+++|-++.+....++.+....         ..+++++++|..+ +.-...+||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            4899999999999999999987 89999999987766665543221         2378999999765 33234678998


Q ss_pred             Ee
Q 028957           72 IE   73 (201)
Q Consensus        72 ~~   73 (201)
                      +.
T Consensus       169 Yl  170 (250)
T d2oyra1         169 YL  170 (250)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1.9e-05  Score=65.61  Aligned_cols=119  Identities=13%  Similarity=0.020  Sum_probs=73.4

Q ss_pred             CCcEEEecCCCChhhHHHHhc----CC---------------CeEEEEECCHHHHHHHHHHHhhcCCC-----ceEEEEc
Q 028957            1 MTSVLELGCGNSRLSEGLYND----GI---------------TAITCIDLSAVAVEKMQERLLLKGYK-----EVKVLEA   56 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~----~~---------------~~v~~vD~~~~~~~~~~~~~~~~~~~-----~i~~~~~   56 (201)
                      +.+|+|.+||+|.+...+.+.    ..               ..++|+|+++.+...++-++.-.+..     .-.+...
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~  244 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  244 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence            458999999999999877653    10               15899999999999998887655421     1123333


Q ss_pred             ccCCCC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           57 DMLDLP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        57 d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      +....+ ....+||+|+++-.+..-...........+ ....--.+++.+.+.|++||++.++.+
T Consensus       245 ~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~-~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         245 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHP-TSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSC-CSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhhcccccccceeEEecCCccccccccchhhhccc-cccccHHHHHHHHHhccccCcEEEEEe
Confidence            322211 234679999997655321100000000011 112234689999999999999887654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=8.7e-05  Score=57.79  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957            2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~   60 (201)
                      .+|||+|+|.|.+|..+++. .+.+|+++|.++...+..++.+..   .++.++.+|+..
T Consensus        45 ~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~  101 (322)
T d1i4wa_          45 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYD  101 (322)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTC
T ss_pred             CeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhh
Confidence            46999999999999999987 455999999999999999887643   478999999764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.41  E-value=0.00046  Score=48.14  Aligned_cols=94  Identities=19%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCcee
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~~D   69 (201)
                      |++||-+|||. |.++..+++....+|+++|.+++.++.+++.    +. . ..+..+.....          .....+|
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga-~-~~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA-D-VTLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC-S-EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC-c-EEEeccccccccchhhhhhhcccccCCc
Confidence            57889999986 7777777766333999999999999888764    21 1 11222211100          1134689


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|+-...                     ....++...+.++++|++++....
T Consensus       101 ~vid~~g---------------------~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         101 VTIDCSG---------------------NEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EEEECSC---------------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eeeecCC---------------------ChHHHHHHHHHHhcCCceEEEecC
Confidence            9884221                     135677788999999999987654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.40  E-value=0.0001  Score=54.82  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957            2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL   80 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~   80 (201)
                      .+|+|||||.|+++..++..... .+.|+++--+..+.-. .....+.+-+.+...+.. ...+....|+|+|...-   
T Consensus        68 ~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-~~~~~~~ni~~~~~~~dv-~~l~~~~~D~vlcDm~e---  142 (257)
T d2p41a1          68 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-PMSTYGWNLVRLQSGVDV-FFIPPERCDTLLCDIGE---  142 (257)
T ss_dssp             EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCSTTGGGEEEECSCCT-TTSCCCCCSEEEECCCC---
T ss_pred             CeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-cccccccccccchhhhhH-HhcCCCcCCEEEeeCCC---
Confidence            47999999999999999877432 7788887322100000 000001111233322211 12346789999986432   


Q ss_pred             eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                        ++++|..    ......++++-+.+.|+|||.+++-.+.
T Consensus       143 --ss~~~~v----d~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         143 --SSPNPTV----EAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             --CCSSHHH----HHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             --CCCCchh----hhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence              1122110    1112346778888999999998887665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00028  Score=50.01  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--------C-CCCCcee
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--------P-FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--------~-~~~~~~D   69 (201)
                      |++||-+|||. |.++..+++. |+.+|+++|.+++.++.+++.    +..  .++...-.+.        . .....+|
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--LTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccc----cce--EEEeccccchHHHHHHHHHhhCCCCce
Confidence            57899999986 7777777776 545899999999999888653    221  2221110110        0 1234589


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +|+....-                     ...++...+.|++||++++....
T Consensus       103 vvid~vG~---------------------~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         103 FILEATGD---------------------SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             EEEECSSC---------------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEeecCCc---------------------hhHHHHHHHHhcCCCEEEEEeec
Confidence            98853211                     23567788999999999877543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.37  E-value=0.00029  Score=49.73  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=63.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~   72 (201)
                      |++|+-+|||. |..+..+++. |..+|+++|.+++.++.+++.    +..  .++.-.-.+.     . .....+|+|+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~--~~i~~~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT--DILNYKNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS--EEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc--ccccccchhHHHHHHHHhhccCcceEE
Confidence            57889999987 8888888877 555899999999998888753    211  2221111110     0 1234599988


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      -....                     ...++...+.++|+|++++.....
T Consensus       102 d~~g~---------------------~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2         102 MAGGG---------------------SETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             ECSSC---------------------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             EccCC---------------------HHHHHHHHHHHhcCCEEEEEeecC
Confidence            53211                     246677789999999999876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00057  Score=47.81  Aligned_cols=95  Identities=22%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      |++|+-+|||+ |.++..+++. |..+|+++|.++..++.+++.    +.+  .++..+-.+..        .....+|+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~--~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD--LVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--EEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc--ccccccccccccccccccccCCCCceE
Confidence            56899999987 6666666665 555899999999999988753    221  12221111100        01246899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      |+....                     ....++...+.+++||++++.....
T Consensus       101 vid~~G---------------------~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         101 TIECTG---------------------AEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEECSC---------------------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEeccC---------------------CchhHHHHHHHhcCCCEEEEEecCC
Confidence            885321                     1457788899999999998876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.27  E-value=0.00077  Score=47.30  Aligned_cols=93  Identities=16%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~~   73 (201)
                      |++||-+|||. |..+..+++. +...++++|.++..++.+++.    +..  .++..+-.+.     ...++.+|+|+-
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--EEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence            56889999986 5566666655 666889999999988888764    221  2332221111     123457999984


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ...                     ....++...+.++|+|++++...
T Consensus       103 ~~G---------------------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         103 STG---------------------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             CSC---------------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCC---------------------cHHHHHHHHhcccCceEEEEEee
Confidence            211                     14577788899999999987653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.93  E-value=0.0017  Score=45.60  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-------CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~v   71 (201)
                      |++|+-+|||. |..+..+++. |...|+++|.+++.++.+++.    +..  .++...-.+.       ....+.+|+|
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~G~d~v  102 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--DCLNPRELDKPVQDVITELTAGGVDYS  102 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC--cccCCccchhhhhhhHhhhhcCCCcEE
Confidence            57899999998 8888888776 555899999999988888763    221  2221111110       0123568999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG  121 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  121 (201)
                      +-...                     ....++...+.++++ |++++....
T Consensus       103 ie~~G---------------------~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         103 LDCAG---------------------TAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             EESSC---------------------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             EEecc---------------------cchHHHHHHHHhhcCCeEEEecCCC
Confidence            85321                     145788889999996 999887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.89  E-value=0.002  Score=44.91  Aligned_cols=94  Identities=16%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----C-CCCCceeEEEe
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----P-FSNDCFDVVIE   73 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~-~~~~~~D~v~~   73 (201)
                      |++||-+|+|. |..+..+++. +...++++|.+++.++.+++.    +.  ..++..+-...    . .....+|+|+.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga--~~~i~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA--DHVVDARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC--SEEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc--ceeecCcccHHHHHHHhhCCCCceEEEE
Confidence            46889999987 5666666654 666999999999888888753    21  12332221110    0 22346899885


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      ...                     -...++...+.++++|++++....
T Consensus       107 ~~g---------------------~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2         107 FVG---------------------SQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             SSC---------------------CHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             ecC---------------------cchHHHHHHHHHhCCCEEEEEeCc
Confidence            322                     134678889999999999987643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00027  Score=49.42  Aligned_cols=96  Identities=18%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCC-CCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD-LPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~~~~~~~~D~v~~~~~   76 (201)
                      |++|+-+|+|. |.++..+++. |. +|+++|.+++.++.+++.    +.+  .++.. +-.. .....+.+|+++....
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~d~vi~~~~  100 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYFDTFDLIVVCAS  100 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhhhcccceEEEEec
Confidence            57899999985 7777777765 66 899999999988888753    322  22221 1111 1112356898875211


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ  122 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  122 (201)
                      ...                   ...++...+.|+++|++++.....
T Consensus       101 ~~~-------------------~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2         101 SLT-------------------DIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CST-------------------TCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             CCc-------------------cchHHHHHHHhhccceEEEecccc
Confidence            100                   012345678999999998875443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.73  E-value=0.0026  Score=45.45  Aligned_cols=106  Identities=14%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV   70 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~   70 (201)
                      |++||-+|||. |..+..+++. +..+|+++|.++..++.+++.    +.   ..+. +....+        .....+|+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~-~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIAD-LSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEE-TTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEE-eCCCcCHHHHHHHHhCCCCcEE
Confidence            57899999998 6677777755 555999999999999888764    21   1111 111111        12346899


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ++-.......   ...++.   -........++.+.+.++|+|++.+...
T Consensus        98 vid~vG~~~~---~~~~~~---~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          98 AVDAVGFEAR---GHGHEG---AKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEECCCTTCB---CSSTTG---GGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEECcccccc---CCcccc---eeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            8853221110   000000   0001124688999999999999998754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.72  E-value=0.00078  Score=51.33  Aligned_cols=45  Identities=11%  Similarity=0.016  Sum_probs=40.4

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      |+.|||..||+|+.+..+.+.+. +.+|+|++++.++.+++++...
T Consensus       251 gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         251 DDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence            57899999999999999888887 9999999999999999886543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.69  E-value=0.0042  Score=48.57  Aligned_cols=121  Identities=13%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             cEEEecCCCChhhHHHHhc----------------CCC-eEEEEECCHHHHHHHHHHHhhcC--CCc--eEEEEcccCCC
Q 028957            3 SVLELGCGNSRLSEGLYND----------------GIT-AITCIDLSAVAVEKMQERLLLKG--YKE--VKVLEADMLDL   61 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~----------------~~~-~v~~vD~~~~~~~~~~~~~~~~~--~~~--i~~~~~d~~~~   61 (201)
                      +|.|+||.+|..+..+...                .+. +|..-|+-..--...-+.+....  .++  +.-+.+....-
T Consensus        54 ~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~r  133 (359)
T d1m6ex_          54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR  133 (359)
T ss_dssp             CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhh
Confidence            5899999999887533321                122 78888875443333333332221  111  23355666554


Q ss_pred             CCCCCceeEEEeccccceeee-------cCCCCCCCC--Ccc---------HHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957           62 PFSNDCFDVVIEKATMEVLFV-------NSGDPWNPQ--PET---------VTKVMAMLEGVHRVLKPDGLFISVSFGQP  123 (201)
Q Consensus        62 ~~~~~~~D~v~~~~~l~~~~~-------~~~~~~~~~--~~~---------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  123 (201)
                      -+|.++.|+++++.++|++--       +.+.-|+..  +..         ..|...+|+.=.+-|+|||++++..+..+
T Consensus       134 LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~  213 (359)
T d1m6ex_         134 LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRR  213 (359)
T ss_dssp             CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECS
T ss_pred             cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccC
Confidence            588999999999999998721       112223211  111         23566788888889999999998876654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.68  E-value=0.0012  Score=49.37  Aligned_cols=45  Identities=22%  Similarity=0.277  Sum_probs=40.9

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK   46 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~   46 (201)
                      |+.|||..||+|+.+.+..+.+. +++|+|+++...+.+++++...
T Consensus       208 gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         208 GSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999998888887 9999999999999999998653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.65  E-value=0.0031  Score=47.93  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957            2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK   74 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~   74 (201)
                      .+||||.||.|.++.-+-+.|...+.++|+++.+++..+.|..      -.++.+|+.++.. .-...|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhHcccccEEeec
Confidence            4799999999999998888888778899999998888877752      2557789887642 12357988853

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.0026  Score=43.93  Aligned_cols=92  Identities=13%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEEec
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~~~   74 (201)
                      |++||-+|+|. |..+..+++....+|+++|.+++.++.+++.    +..  .++..+-.+.     ....+..++|++.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~~~~i~~~  101 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS--LTVNARQEDPVEAIQRDIGGAHGVLVTA  101 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc--ccccccchhHHHHHHHhhcCCccccccc
Confidence            56888899987 7777777766334999999999988888653    321  2222211111     0112334444432


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                      ...++...+.|+++|++++...
T Consensus       102 ~~----------------------~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2         102 VS----------------------NSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             SC----------------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             cc----------------------chHHHHHHHHhcCCcEEEEEEe
Confidence            11                      2467778899999999987654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.48  E-value=0.009  Score=41.62  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-------CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~v   71 (201)
                      |++|+-+|||. |..+..+++. +..+|+++|.+++.++.+++.    +..  .++...-.+.       ....+.+|++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~--~~i~~~~~d~~~~~~~~~~~~~G~d~v  101 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT--ECLNPKDYDKPIYEVICEKTNGGVDYA  101 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc--EEEcCCCchhHHHHHHHHhcCCCCcEE
Confidence            57899999987 5555556654 666999999999999888763    221  2221111110       0223468888


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhccc-CCcEEEEEecCCc
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK-PDGLFISVSFGQP  123 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~  123 (201)
                      +.....                     ...++.....++ ++|++++.....+
T Consensus       102 id~~g~---------------------~~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2         102 VECAGR---------------------IETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             EECSCC---------------------HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             EEcCCC---------------------chHHHHHHHHHHHhcCceEEEEEecC
Confidence            853211                     345555666665 4699888765443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.0064  Score=42.01  Aligned_cols=94  Identities=21%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             CCcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC------CCCCCceeEE
Q 028957            1 MTSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~~D~v   71 (201)
                      |++||-+|| |. |..+..+++. +...|+++|.+++.++.+++.    +.+  .++..+-.+.      ....+.+|++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--eeeccCCcCHHHHHHHHhhcccchhh
Confidence            468999997 33 5556655554 656999999999988888764    221  2222221111      0224569999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +....                     -...++...+.++|+|++++....
T Consensus       102 id~~g---------------------~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         102 IDLNN---------------------SEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EESCC---------------------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             hcccc---------------------cchHHHhhhhhcccCCEEEEeccc
Confidence            85322                     145677788999999999887543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.35  E-value=0.0042  Score=47.49  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   74 (201)
                      +.+||||.||.|+++..+.+.|...+.++|+++.+++..+.|....       .++|+.++... ...+|+++..
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhcceeeeeecc
Confidence            4689999999999999998889877888999999999998887432       24677665321 2357998853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.24  E-value=0.0046  Score=42.56  Aligned_cols=91  Identities=13%  Similarity=0.134  Sum_probs=56.4

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-------CCCCceeEEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-------FSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D~v~   72 (201)
                      |++||-.|||+ |..+..+++....+|++++.+++.++.+++.    +..  .++  +..+..       ...+.+|+|+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~--~~~--~~~~~~~~~~~~~~~~~~~~~v~   99 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD--LVV--NPLKEDAAKFMKEKVGGVHAAVV   99 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS--EEE--CTTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc--eec--ccccchhhhhcccccCCCceEEe
Confidence            56888899987 5555666665333899999999988887652    321  111  111111       1123445544


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      +..                      -...++...+.|+|+|++++....
T Consensus       100 ~~~----------------------~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2         100 TAV----------------------SKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             SSC----------------------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ecC----------------------CHHHHHHHHHHhccCCceEecccc
Confidence            321                      135678888999999999887544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.11  E-value=0.00087  Score=46.79  Aligned_cols=97  Identities=9%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      +.+|+-+|+|. |..+...+......|+++|.+++.++..+..+..    ++.....+-..+.-.-...|+|+.....- 
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aalip-  106 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVP-  106 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCT-
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeeecC-
Confidence            47899999997 6666666665334999999999999988877654    44554443322221123579999753320 


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI  116 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  116 (201)
                                    ..+...-+-+++.+.+|||..++
T Consensus       107 --------------G~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         107 --------------GRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             --------------TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             --------------CcccCeeecHHHHhhcCCCcEEE
Confidence                          11111234567788999988766

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0025  Score=48.99  Aligned_cols=69  Identities=23%  Similarity=0.348  Sum_probs=51.7

Q ss_pred             CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      +.+|+|+.||.|.++..+.+.|..  -+.++|+++.+++..+.+..     ...++++|+.++.   ++...+|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----~~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----CCCcccCchhhCCHhHcCCCCccEEEee
Confidence            468999999999999888777764  47899999999988887753     4456777877653   222357988853

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.91  E-value=0.024  Score=38.83  Aligned_cols=92  Identities=16%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME   78 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~   78 (201)
                      ++|+=+|||.  |.++..+.+.+.. +|+++|.+++.++.+++.    +  .+.....+....  .....|+|+...   
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~--~~~~~~~~~~~~--~~~~~dlIila~---   70 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G--IIDEGTTSIAKV--EDFSPDFVMLSS---   70 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T--SCSEEESCGGGG--GGTCCSEEEECS---
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----h--cchhhhhhhhhh--hccccccccccC---
Confidence            4688899985  3455566666765 899999999999888764    1  111122222211  123569888532   


Q ss_pred             eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                     +......+++++.+.++++..++-+.
T Consensus        71 ---------------p~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          71 ---------------PVRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             ---------------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---------------Cchhhhhhhhhhhccccccccccccc
Confidence                           33567888999999999876665443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.88  E-value=0.013  Score=40.77  Aligned_cols=42  Identities=21%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      |++|+-+|||. |..+..+++. +..+|+++|.+++.++.+++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            57899999987 5566666655 556999999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.76  E-value=0.036  Score=37.81  Aligned_cols=88  Identities=19%  Similarity=0.233  Sum_probs=56.4

Q ss_pred             CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|.=+|+|.  +.++..+.+.+. +|++.|.+++.++.+++.    +  .+.....+...+    ...|+|+..-    
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~--~~~~~~~~~~~~----~~~DiIilav----   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----Q--LVDEAGQDLSLL----QTAKIIFLCT----   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T--SCSEEESCGGGG----TTCSEEEECS----
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----h--ccceeeeecccc----cccccccccC----
Confidence            3577788874  345556666677 899999999888777653    2  111222222222    3569888532    


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                                    +.....++++++...++++..++-.
T Consensus        66 --------------p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 --------------PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             --------------CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             --------------cHhhhhhhhhhhhhhcccccceeec
Confidence                          2356788999999999887765533

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.70  E-value=0.012  Score=43.50  Aligned_cols=111  Identities=16%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             CcEEEecCCCChhhHHHHhcCC-----------------------------------------CeEEEEECCHHHHHHHH
Q 028957            2 TSVLELGCGNSRLSEGLYNDGI-----------------------------------------TAITCIDLSAVAVEKMQ   40 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~~~-----------------------------------------~~v~~vD~~~~~~~~~~   40 (201)
                      ..++|-.||+|++.++.+....                                         ..+++.|.++.+++.++
T Consensus        52 ~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~  131 (249)
T d1o9ga_          52 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR  131 (249)
T ss_dssp             EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHH
Confidence            3589999999999998875310                                         03567777777887774


Q ss_pred             ---HHHhhcCC-CceEEEEcccCCCC-----CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957           41 ---ERLLLKGY-KEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP  111 (201)
Q Consensus        41 ---~~~~~~~~-~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  111 (201)
                         +++...+. ..+.+.+.|+++..     .+....++|++|-....-...      ......+.+.++...+.+++..
T Consensus       132 ~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~------~~~~~~~~~~~~~~~l~~~~p~  205 (249)
T d1o9ga_         132 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHW------EGQVPGQPVAGLLRSLASALPA  205 (249)
T ss_dssp             HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSS------SSCCCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccc------cccchHHHHHHHHHHHHccCCC
Confidence               46666663 35888999987532     123557899987444332110      0111235577888888888855


Q ss_pred             CcEEEEE
Q 028957          112 DGLFISV  118 (201)
Q Consensus       112 gG~l~~~  118 (201)
                      ...+++.
T Consensus       206 ~s~~~it  212 (249)
T d1o9ga_         206 HAVIAVT  212 (249)
T ss_dssp             TCEEEEE
T ss_pred             CcEEEEe
Confidence            4444443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.014  Score=40.41  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+ | .|..+..+++. |. ++++++.+++..+.+++    .+.+.  ++  |..+..        .....+|
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~--vi--~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHE--VF--NHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EE--ETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCccc--cc--ccccccHHHHhhhhhccCCce
Confidence            578999996 3 36777777776 55 89999988877777654    33322  22  222211        2345699


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +|+...                    .  ...++...+.|+|+|+++.+.
T Consensus       100 ~v~d~~--------------------g--~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         100 IIIEML--------------------A--NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEESC--------------------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEeecc--------------------c--HHHHHHHHhccCCCCEEEEEe
Confidence            998531                    1  246778889999999998764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.065  Score=39.42  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+.+|--|+++|-   ++..+++.|. +|+.++.+++.++.+.+.+...+. .++.++..|+.+..          -..+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4667888877652   3444455677 899999999999888887776553 36788899987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            68998876543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0063  Score=42.06  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=58.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l   77 (201)
                      |++||-+|||. |.++.++++. |. +++++|.+++..+.+++.    +..  .++...-.. .....+.+|+++....-
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad--~~i~~~~~~~~~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMAAHLKSFDFILNTVAA  103 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc--EEEECchhhHHHHhcCCCceeeeeeec
Confidence            57889999986 7777778776 54 778899988877776643    322  222211111 11223579998853211


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                           ...++...++++++|++++...
T Consensus       104 ---------------------~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         104 ---------------------PHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             ---------------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             ---------------------chhHHHHHHHHhcCCEEEEecc
Confidence                                 1235567789999999988654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.41  E-value=0.049  Score=37.33  Aligned_cols=92  Identities=11%  Similarity=0.064  Sum_probs=58.0

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-------CCCCCceeEE
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------PFSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~v   71 (201)
                      |++||-.|||. |.++..+++. +...|+++|.+++..+.+++.    +.+  .++..+-...       ....+.+|+|
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~--~~i~~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc--EEEeCCchhhHHHHHHHHHcCCCCcEe
Confidence            57889899875 5566666655 666999999999888888753    221  2221111100       0123568999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +....                     ...+++.....+++||.+++..
T Consensus       103 id~~G---------------------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         103 FECIG---------------------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             EECSC---------------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             eecCC---------------------CHHHHHHHHHhhcCCceeEEEE
Confidence            85321                     1357778888999988876553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.15  E-value=0.11  Score=33.78  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++|+=+|+  |.++..+++    .|. .|+.+|.+++.++.+.+.+      .+.++.+|+.+..    ..-...|.+++
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            46777776  455555543    355 8999999999888776542      4578999987632    33356788886

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.12  Score=38.11  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |++|-=|..|+++++..++    +.+..+|+.++.+++.++.+.+.+...+ .++.++..|+.+..          -..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            6788666666666665554    3333399999999999998888887665 47889999987642          1125


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..|+++.+......     .+...  ...++           .-.+.+.+.+.|+++|+++.+.
T Consensus        81 ~iDiLVnNAGi~~~-----~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          81 GLDVLVNNAGIAFK-----VADPT--PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SEEEEEECCCCCCC-----TTCCS--CHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CcEEEEEcCCcCCC-----CCccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            79999988665321     11100  11122           2245677788889999987664

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.14  E-value=0.13  Score=35.15  Aligned_cols=42  Identities=17%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             CCcEEEecCCCC-hhhHHHHhc-CCCeEEEEECCHHHHHHHHHH
Q 028957            1 MTSVLELGCGNS-RLSEGLYND-GITAITCIDLSAVAVEKMQER   42 (201)
Q Consensus         1 ~~~vLDlG~G~G-~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~   42 (201)
                      |++||-+|+|.+ .....+++. +..+|+++|.+++..+.+++.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            578999999763 344444444 556999999999988888764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.052  Score=37.48  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEE
Q 028957            1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v   71 (201)
                      |++||-.|+ | .|..+..+++. +. +++++.-+++..+.+++    .+...  ++...-.++     . .....+|+|
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVEY--VGDSRSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCSE--EEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----ccccc--cccCCccCHHHHHHHHhCCCCEEEE
Confidence            467888774 3 36777777766 55 88888888876666653    34322  222111111     0 234579999


Q ss_pred             EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +....                      .+.++.+.+.|+++|+++.+.
T Consensus        99 ~d~~g----------------------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          99 LNSLA----------------------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EECCC----------------------THHHHHHHHTEEEEEEEEECS
T ss_pred             Eeccc----------------------chHHHHHHHHhcCCCEEEEEc
Confidence            96321                      135667789999999988763

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.82  E-value=0.097  Score=40.57  Aligned_cols=72  Identities=17%  Similarity=0.290  Sum_probs=47.9

Q ss_pred             cEEEecCCCChhhHHHHhcC-------CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYNDG-------IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~-------~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~   74 (201)
                      +|+|+|+|+|.++..++...       .. +++.+|.++...+..++.+...  .++.++ .+...++   ...-+|+++
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~--~~i~w~-~~~~~~~---~~~g~iiaN  155 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH-DSFEDVP---EGPAVILAN  155 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE-SSGGGSC---CSSEEEEEE
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc--ccceec-cChhhcc---cCCeEEEec
Confidence            69999999999998776531       11 7999999998887777766532  345443 2333332   122567777


Q ss_pred             ccccee
Q 028957           75 ATMEVL   80 (201)
Q Consensus        75 ~~l~~~   80 (201)
                      -.++++
T Consensus       156 E~fDAl  161 (365)
T d1zkda1         156 EYFDVL  161 (365)
T ss_dssp             SSGGGS
T ss_pred             ccCccc
Confidence            777766

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.81  E-value=0.16  Score=34.90  Aligned_cols=91  Identities=12%  Similarity=0.100  Sum_probs=58.2

Q ss_pred             CCcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC------CCCCCceeEEE
Q 028957            1 MTSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL------PFSNDCFDVVI   72 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~~D~v~   72 (201)
                      |++||-.|++.  |..+..+++....+|+++.-+++..+.+++.    +.+  .++..+-.+.      ......+|+|+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~--~vi~~~~~~~~~~~~~~~~~~Gvd~v~  103 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD--AAFNYKTVNSLEEALKKASPDGYDCYF  103 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS--EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh--hhcccccccHHHHHHHHhhcCCCceeE
Confidence            56888777755  5666777776334999999998877766653    322  2222211111      01245689988


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      -.-.                      .+.++...+.|+++|+++...
T Consensus       104 D~vG----------------------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         104 DNVG----------------------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             ESSC----------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred             EecC----------------------chhhhhhhhhccCCCeEEeec
Confidence            5211                      346788999999999998764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.74  E-value=0.021  Score=39.86  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             CCcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~v~~~~~   76 (201)
                      |.+||--|++.  |.++.++++....+|+++.-+++..+.+++.    +.+.+--...+...  .....+.+|+|+-.-.
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            35688877644  6777787766333899999888877777653    32222111111111  1133567999885321


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                            ...++...+.|+++|+++.+...
T Consensus       108 ----------------------g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         108 ----------------------GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             ----------------------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             ----------------------chhHHHHHHHhCCCceEEEeecc
Confidence                                  23567888999999999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.16  Score=36.99  Aligned_cols=76  Identities=13%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+.+|--|++.|   .++..+++.|. +|+.+|.+++.++...+.+...+ .++..+..|+.+..          -..+.
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            566777777665   34555566677 89999999999998888887665 47888999987642          12356


Q ss_pred             eeEEEeccccc
Q 028957           68 FDVVIEKATME   78 (201)
Q Consensus        68 ~D~v~~~~~l~   78 (201)
                      .|+++.+....
T Consensus        85 idilinnag~~   95 (244)
T d1yb1a_          85 VSILVNNAGVV   95 (244)
T ss_dssp             CSEEEECCCCC
T ss_pred             CceeEeecccc
Confidence            88888765543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.34  E-value=0.14  Score=37.52  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEE-EECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITC-IDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~-vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+. ...+++..+.+.+.+...+. ++.++..|+.+..          ...+
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            577887775554   45555566677 6665 45677778888777776663 7888999987632          1235


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        84 ~idilinnag~   94 (259)
T d1ja9a_          84 GLDFVMSNSGM   94 (259)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCcEEEecccc
Confidence            68998876554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.16  Score=34.75  Aligned_cols=88  Identities=14%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             CCcEEEecCCC--ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCcee
Q 028957            1 MTSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFD   69 (201)
Q Consensus         1 ~~~vLDlG~G~--G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D   69 (201)
                      |++||-.|+|+  |..+..+++. |. +|++++.+++..+.+++.    +.+  .++  |..+.+        -....+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~--~vi--~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--QVI--NYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe--EEE--ECCCCCHHHHHHHHhCCCCeE
Confidence            46788886664  6777777776 55 999999999988888753    322  222  222211        1245789


Q ss_pred             EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +|+....                      ...+......++++|++++..
T Consensus       100 ~v~d~~g----------------------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         100 VVYDSVG----------------------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEECSC----------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred             EEEeCcc----------------------HHHHHHHHHHHhcCCeeeecc
Confidence            8885321                      124567788999999987654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.31  E-value=0.0074  Score=42.47  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=33.1

Q ss_pred             CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHH
Q 028957            1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERL   43 (201)
Q Consensus         1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~   43 (201)
                      +.+|+-+|+|. |..+...+.. |. .|..+|.++..++..++..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhh
Confidence            46899999998 6666666555 55 9999999999888888653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.31  Score=35.24  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+..    +...+..|+.+..          -..+.
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA----NGKGLMLNVTDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC----CCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence            456666676554   23444455677 899999999988877766543    5677888987532          11357


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        79 iDilVnnAg~   88 (243)
T d1q7ba_          79 VDILVNNAGI   88 (243)
T ss_dssp             CSEEEECCCC
T ss_pred             cceehhhhhh
Confidence            8998876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.81  E-value=0.34  Score=31.21  Aligned_cols=88  Identities=10%  Similarity=-0.027  Sum_probs=55.8

Q ss_pred             CCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEeccccceeeec
Q 028957            9 CGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLFVN   83 (201)
Q Consensus         9 ~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~~   83 (201)
                      ||.|..+..+++.-.. .++.+|.+++..+.+...       .+.++.+|+.+..    ..-...+.+++..        
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--------   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKANVRGARAVIVNL--------   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHTTCTTCSEEEECC--------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHhhhhcCcEEEEec--------
Confidence            4567788888876333 788999999887766432       5788999987632    3334667777521        


Q ss_pred             CCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           84 SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                                +.......+-...+.+.|...++.....
T Consensus        71 ----------~~d~~n~~~~~~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          71 ----------ESDSETIHCILGIRKIDESVRIIAEAER   98 (129)
T ss_dssp             ----------SSHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred             ----------cchhhhHHHHHHHHHHCCCceEEEEEcC
Confidence                      1122233344455667888887766543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.57  E-value=0.46  Score=34.72  Aligned_cols=110  Identities=13%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+.++.+ ++.++.+.+.+...+ .++.+++.|+.+..          -..+
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC-CceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            467777777655   24555566677 89999886 666777766666655 36888889987631          1125


Q ss_pred             ceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957           67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ..|+++.+......     .|+.+  ...++           .-.+.+.+.+.|+.+|..+++.
T Consensus        96 ~idilV~nag~~~~-----~~~~~--~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          96 KLDIVCSNSGVVSF-----GHVKD--VTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             CCCEEEECCCCCCC-----CCGGG--CCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCccccccccchh-----hhhhh--hhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            67988866543221     11111  01122           2234566677788888877653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.28  Score=34.24  Aligned_cols=97  Identities=13%  Similarity=0.209  Sum_probs=61.8

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------CC---------------CceEEEEcc
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------GY---------------KEVKVLEAD   57 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~~---------------~~i~~~~~d   57 (201)
                      ++|--+|+|. | .++..++..|. .|+.+|.+++.++.+.+++...       +.               .++.+. .|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-ch
Confidence            4677899986 2 44555566677 9999999999988887765321       11               011221 22


Q ss_pred             cCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           58 MLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        58 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      ....   ....|+|+-.-                ++..+...++++++.+.++++..+.-.+
T Consensus        83 ~~~a---~~~ad~ViEav----------------~E~l~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          83 AASV---VHSTDLVVEAI----------------VENLKVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             HHHH---TTSCSEEEECC----------------CSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             hHhh---hcccceehhhc----------------ccchhHHHHHHHHHhhhcccCceeeccC
Confidence            1110   13458887531                1556778899999999999987765443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.32  E-value=0.011  Score=40.91  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=53.8

Q ss_pred             CCcEEEecC-CC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGC-GN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~-G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      |++||-.|+ |. |..+..+++. |. +|++++.+++..+.+++    .+.+.+- -..+.....-....+|+|+-..  
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~--   99 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEAA-TYAEVPERAKAWGGLDLVLEVR--   99 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEEE-EGGGHHHHHHHTTSEEEEEECS--
T ss_pred             CCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccceee-ehhhhhhhhhcccccccccccc--
Confidence            567888885 43 6777777776 55 89999998877777664    3332221 1111110001134689988421  


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                                      .     ..++...+.|+|+|+++...
T Consensus       100 ----------------G-----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         100 ----------------G-----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             ----------------C-----TTHHHHHTTEEEEEEEEEC-
T ss_pred             ----------------c-----hhHHHHHHHHhcCCcEEEEe
Confidence                            1     12456778999999988754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.08  E-value=0.3  Score=35.64  Aligned_cols=74  Identities=23%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|   ..+..+++.|. +|+.+|.+++.++.+.+.+...+ .++..+..|+.+..          -..+.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            567777776655   24445556677 89999999999998888877665 36788899987632          11257


Q ss_pred             eeEEEeccc
Q 028957           68 FDVVIEKAT   76 (201)
Q Consensus        68 ~D~v~~~~~   76 (201)
                      .|+++.+..
T Consensus        83 iDilVnnaG   91 (260)
T d1zema1          83 IDFLFNNAG   91 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCeehhhhc
Confidence            899887644

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.96  E-value=0.25  Score=36.23  Aligned_cols=74  Identities=8%  Similarity=0.078  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|-   ++..+++.|. +|+.+|.+++.++.+.+.+...+  .+.++..|+.+..          -..+.
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5677777866552   3344455577 89999999998888877765443  6788889987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        83 iD~lVnnAG~   92 (268)
T d2bgka1          83 LDIMFGNVGV   92 (268)
T ss_dssp             CCEEEECCCC
T ss_pred             cceecccccc
Confidence            8999876543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.31  Score=35.23  Aligned_cols=71  Identities=15%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCceeEE
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~v   71 (201)
                      |+++|--|+++|   .++..+++.|. +|+.+|.+++.++.+.+..     +++..++.|+.+..      -.-++.|++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            578888887765   34455556677 8999999998877665543     35678888987531      123678998


Q ss_pred             Eecccc
Q 028957           72 IEKATM   77 (201)
Q Consensus        72 ~~~~~l   77 (201)
                      +.+...
T Consensus        81 VnnAg~   86 (244)
T d1pr9a_          81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            876544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.85  E-value=0.35  Score=35.25  Aligned_cols=76  Identities=17%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~   66 (201)
                      |+++|-.|+..|   .++..+++.|. +|+.++.+++.++.+.+.+...+ .++.++..|+.+..           ...+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            577888887655   34455566687 89999999998888888877766 36778889987632           1125


Q ss_pred             ceeEEEeccccc
Q 028957           67 CFDVVIEKATME   78 (201)
Q Consensus        67 ~~D~v~~~~~l~   78 (201)
                      ..|+++.+....
T Consensus        84 ~idilinnag~~   95 (258)
T d1ae1a_          84 KLNILVNNAGVV   95 (258)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CcEEEecccccc
Confidence            688888765543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.82  E-value=0.31  Score=31.46  Aligned_cols=62  Identities=16%  Similarity=0.264  Sum_probs=39.4

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~   73 (201)
                      ++++=+|+|  .++..+++    .|. .|+.+|.+++.++.+++.       ....+.+|+.+..    ..-...|.+++
T Consensus         1 k~~iIiG~G--~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-------~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLG--RFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-------ATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-------CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-------CCcceeeecccchhhhccCCccccEEEE
Confidence            355666665  55554443    455 899999999988877432       3466778987643    12245687765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=0.54  Score=32.32  Aligned_cols=91  Identities=10%  Similarity=0.091  Sum_probs=55.0

Q ss_pred             CcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEEe
Q 028957            2 TSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVIE   73 (201)
Q Consensus         2 ~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~~   73 (201)
                      .+||-.|+  |-|..+..+++. |...|+++..+++....+.+.   .+.+  .++...-.+.     ......+|+|+-
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad--~vi~~~~~~~~~~~~~~~~~GvDvv~D  106 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD--AAVNYKTGNVAEQLREACPGGVDVYFD  106 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS--EEEETTSSCHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce--EEeeccchhHHHHHHHHhccCceEEEe
Confidence            56787774  448899999886 555788888776655544432   2322  2222111111     012356999984


Q ss_pred             ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .-.                      ...++...+.|+++|+++.+-
T Consensus       107 ~vG----------------------g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         107 NVG----------------------GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             SSC----------------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred             cCC----------------------chhHHHHhhhccccccEEEec
Confidence            211                      246788899999999998753

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=91.71  E-value=1.8  Score=32.05  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=64.3

Q ss_pred             cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC---CceEEEEcccCCC--------CCCCCceeE
Q 028957            3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDL--------PFSNDCFDV   70 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~--------~~~~~~~D~   70 (201)
                      .|+.||||-=.-..-+ ..... .++=+|. +++++.-++.+...+.   .+...+..|+.+.        .+.....=+
T Consensus        92 qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          92 QFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             EEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             eEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            4677988764443333 11222 6666664 7788777777765542   3456777777642        122233345


Q ss_pred             EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +++-+++.++             ..+...++++.+.....||+.+++-.
T Consensus       170 ~i~EGvl~YL-------------~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         170 WLAEGLLMYL-------------PATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             EEECSCGGGS-------------CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEccccccC-------------CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            5555666655             55788999999999999999988653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.21  E-value=1.3  Score=29.61  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             CcEEEecCCCC--hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEE------EEcccCCCCCCCCceeEEE
Q 028957            2 TSVLELGCGNS--RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKV------LEADMLDLPFSNDCFDVVI   72 (201)
Q Consensus         2 ~~vLDlG~G~G--~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~------~~~d~~~~~~~~~~~D~v~   72 (201)
                      ++|--+|+|..  .++..+++.|. +|..+|.+++.++..++.-.... .+....      ...|...   .-...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---HhcCCCEEE
Confidence            67788899873  34455566677 99999999988877765421100 011111      1111111   013578888


Q ss_pred             eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957           73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      ..-                  .......+++++...++++..+++
T Consensus        78 i~v------------------~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVV------------------PAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECS------------------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEE------------------chhHHHHHHHHhhhccCCCCEEEE
Confidence            531                  123567899999999998876553

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.96  E-value=0.38  Score=34.98  Aligned_cols=74  Identities=14%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++ +.++..+    ++.|. +|+.++.+++.++.+.+.+...+ .++.++..|+.+..          -..+
T Consensus        11 gK~alITGas-~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g-~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          11 GKCAIITGAG-AGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4566655554 4444444    44566 89999999999988888777665 36788899987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        88 ~iDilvnnAG~   98 (255)
T d1fmca_          88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEeeeCCcC
Confidence            78998876554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.95  E-value=0.46  Score=34.59  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+...+ .++.++..|+.+..           ...+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            567777776654   23444555677 89999999999988888777665 36788889987521           0123


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        86 ~idilvnnAG~   96 (259)
T d2ae2a_          86 KLNILVNNAGI   96 (259)
T ss_dssp             CCCEEEECCCC
T ss_pred             CceEEEECCce
Confidence            68998876543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.73  E-value=0.54  Score=31.74  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             CCcEEEecCCCChhh-HHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957            1 MTSVLELGCGNSRLS-EGLYND-GITAITCIDLSAVAVEKMQE   41 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~-~~l~~~-~~~~v~~vD~~~~~~~~~~~   41 (201)
                      |++|+-+|+|.+..+ ..++.. +...|+++|.+++.++.+++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            578999999884443 333333 55599999999998888875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.71  E-value=0.1  Score=38.15  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=40.5

Q ss_pred             EEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           52 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        52 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      .++.+|....  .++++++|+|+..-.+...+.+    |....+-.+.....+.++.++|+|+|.+++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~----~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCccc----ccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            4677777653  4678999999974332211111    11111223446788999999999999988754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.70  E-value=0.35  Score=35.75  Aligned_cols=76  Identities=14%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+..|   .++..+++.|. +|+.+|.+++.++.+.+.+....-.++.++..|+.+..          ...+.
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            467777777655   34444455677 99999999988877766554332246778888886532          12357


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            8988876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.60  E-value=0.47  Score=34.86  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=52.9

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+...+.  .++..+..|+.+..          -..
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            567777776655   24445556677 899999999999888887766553  36888999987632          112


Q ss_pred             CceeEEEeccc
Q 028957           66 DCFDVVIEKAT   76 (201)
Q Consensus        66 ~~~D~v~~~~~   76 (201)
                      +..|+++.+..
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            57899987654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.38  E-value=0.18  Score=35.12  Aligned_cols=73  Identities=12%  Similarity=0.042  Sum_probs=47.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK   74 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~   74 (201)
                      |++||-.|++.|   .++..+++.|. +|+.++.+++.++.+.+.+....  ++.+...|..+..   -.-+..|+++.+
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDilin~   99 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVFTA   99 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeeeec
Confidence            577888886554   24444556677 89999999998888877765542  4455666655421   112467999876


Q ss_pred             cc
Q 028957           75 AT   76 (201)
Q Consensus        75 ~~   76 (201)
                      ..
T Consensus       100 Ag  101 (191)
T d1luaa1         100 GA  101 (191)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.15  E-value=0.44  Score=34.91  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+...+.  .++..+..|+.+..          -..
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            466777776654   23444555677 899999999999988888766542  35788999987632          112


Q ss_pred             CceeEEEeccc
Q 028957           66 DCFDVVIEKAT   76 (201)
Q Consensus        66 ~~~D~v~~~~~   76 (201)
                      +..|+++.+..
T Consensus        84 g~iDilvnnAG   94 (272)
T d1xkqa_          84 GKIDVLVNNAG   94 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeCCc
Confidence            56898887644

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.09  E-value=0.52  Score=34.14  Aligned_cols=73  Identities=14%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      +.+|--|++. .++..+++    .|. +|+.+|.+++.++.+.+.+...+ .++..+..|+.+..          -..+.
T Consensus        11 KvalITGas~-GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          11 KVALVTGAGR-GIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG-YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             CEEEEESTTS-HHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CEEEEeCCCC-HHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4566666554 45554444    466 89999999999988888877665 36888999987632          12367


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        88 iDilvnnag~   97 (251)
T d2c07a1          88 VDILVNNAGI   97 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceeeeecccc
Confidence            8998876544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.04  E-value=0.76  Score=31.64  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCC
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP   62 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~   62 (201)
                      ++|--+|+|+ | .++..++..|. +|+.+|.+++.++.+.++....       + .         .++.. ..+...  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--   80 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD--   80 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence            4677788876 2 33445566677 8999999999988777654321       1 0         01221 122211  


Q ss_pred             CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                        -...|+|+-.-                +++.+...++++++-+.++++-.+.-.+
T Consensus        81 --~~~adlViEav----------------~E~l~~K~~lf~~l~~~~~~~~IiaSnT  119 (186)
T d1wdka3          81 --FGNVDLVVEAV----------------VENPKVKQAVLAEVENHVREDAILASNT  119 (186)
T ss_dssp             --GGGCSEEEECC----------------CSCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             --ccccceeeeee----------------cchHHHHHHHHHHHHhhcCCCeeEEecc
Confidence              23568887521                2566778899999999999887765443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.53  Score=34.34  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|   .++..+++.|. +|++++.+++.++.+.+.........+.....|..+..          ...+.
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   92 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG   92 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence            567888887766   34455556677 99999999999988877655444346677777765421          11246


Q ss_pred             eeEEEeccccc
Q 028957           68 FDVVIEKATME   78 (201)
Q Consensus        68 ~D~v~~~~~l~   78 (201)
                      .|+++.+....
T Consensus        93 ~~~li~nag~~  103 (269)
T d1xu9a_          93 LDMLILNHITN  103 (269)
T ss_dssp             CSEEEECCCCC
T ss_pred             ccccccccccc
Confidence            78888765543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.83  E-value=0.38  Score=37.55  Aligned_cols=46  Identities=15%  Similarity=0.222  Sum_probs=37.7

Q ss_pred             CcEEEecCCCChhhHHHHhc--C-CCeEEEEECCHHHHHHHHHHHhhcC
Q 028957            2 TSVLELGCGNSRLSEGLYND--G-ITAITCIDLSAVAVEKMQERLLLKG   47 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~~--~-~~~v~~vD~~~~~~~~~~~~~~~~~   47 (201)
                      ..++|+||-.|..+..++..  + ..+|+++|+++...+.+++++..+.
T Consensus       214 ~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         214 EKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            57999999999988777654  2 2389999999999999999877554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.78  E-value=0.72  Score=33.35  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             CcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCce
Q 028957            2 TSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~~   68 (201)
                      +.+|--|++.|-   ++..+++.|. +|+.+|.+++.++.+.+.+...+ .++.++..|+.+..          -..+..
T Consensus         3 KValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG-VEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            445656655442   3344455577 89999999999988888777665 36888999987632          113578


Q ss_pred             eEEEecccc
Q 028957           69 DVVIEKATM   77 (201)
Q Consensus        69 D~v~~~~~l   77 (201)
                      |+++.+...
T Consensus        81 DilVnnAG~   89 (257)
T d2rhca1          81 DVLVNNAGR   89 (257)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecccc
Confidence            998876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.74  E-value=0.45  Score=34.45  Aligned_cols=74  Identities=9%  Similarity=0.084  Sum_probs=49.9

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+...  .++.++..|+.+..          -..+.
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            456666665544   23444455677 8999999999888887776543  37888999987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        83 iDiLVnnAg~   92 (251)
T d1zk4a1          83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEecccc
Confidence            8998876544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.67  E-value=0.52  Score=34.16  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+....-.++.++..|+.+..          -..+.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            567777777655   24445556677 89999999888877666553322136788899987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        84 iDiLVnnAG~   93 (251)
T d1vl8a_          84 LDTVVNAAGI   93 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999976554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.65  E-value=0.62  Score=33.90  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCCC----------CCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDLP----------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~~----------~~~   65 (201)
                      |+.+|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+...+.  .++.++..|+.+..          -..
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            455666666544   23344455677 899999999999888887766542  35889999987632          112


Q ss_pred             CceeEEEecccc
Q 028957           66 DCFDVVIEKATM   77 (201)
Q Consensus        66 ~~~D~v~~~~~l   77 (201)
                      +..|+++.+...
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            578998876543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.63  E-value=0.69  Score=33.60  Aligned_cols=76  Identities=22%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+.... -.++..++.|+.+..          -..+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            567777777665   24555566687 89999999998888777665443 236788899987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        83 ~iDiLVnnAG~   93 (258)
T d1iy8a_          83 RIDGFFNNAGI   93 (258)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            78999877553

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.56  E-value=0.15  Score=37.99  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=41.3

Q ss_pred             ceEEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCC------CccH----HHHHHHHHHHhhcccCCcEEEE
Q 028957           50 EVKVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQ------PETV----TKVMAMLEGVHRVLKPDGLFIS  117 (201)
Q Consensus        50 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~------~~~~----~~~~~~l~~~~~~L~~gG~l~~  117 (201)
                      +-.++.+|....  .++++++|+|+..           +||+..      ....    +...+.+++++++|+|+|.+++
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tD-----------PPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i   80 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTS-----------PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV   80 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEEC-----------CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEEC-----------CCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            347888887652  3678999999973           454421      1111    2256789999999999999887


Q ss_pred             Eec
Q 028957          118 VSF  120 (201)
Q Consensus       118 ~~~  120 (201)
                      ...
T Consensus        81 ~~~   83 (320)
T d1booa_          81 DFG   83 (320)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.49  E-value=0.7  Score=33.21  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCceeEE
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFDVV   71 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~v   71 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+..     +++..++.|+.+..      -.-++.|++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence            577887776655   23444555677 8999999988776665443     35778888887532      123678998


Q ss_pred             Eecccc
Q 028957           72 IEKATM   77 (201)
Q Consensus        72 ~~~~~l   77 (201)
                      +.+...
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.61  Score=33.73  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+.... -.++.++..|+.+..          -..+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            567777777654   23344455577 89999999998888777665432 236788999987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        82 ~iDilVnnAg~   92 (254)
T d2gdza1          82 RLDILVNNAGV   92 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcCeecccccc
Confidence            78998876544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=1.2  Score=29.26  Aligned_cols=94  Identities=16%  Similarity=0.039  Sum_probs=53.6

Q ss_pred             cEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957            3 SVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK   74 (201)
Q Consensus         3 ~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~   74 (201)
                      +|+=+|+  |..+..+++    .+. .++.+|.+++......+....   ..+.++.+|..+..    ..-...|.+++.
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            4555655  555555544    344 899999998755444433332   25789999987632    223467888763


Q ss_pred             cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                      ..                 + +.....+....+.+.|...++....
T Consensus        79 ~~-----------------~-d~~n~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          79 SD-----------------N-DADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             SS-----------------C-HHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             cc-----------------c-HHHHHHHHHHHHHhCCCCceEEEEc
Confidence            11                 1 2222333344556677777776543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.26  E-value=0.68  Score=33.67  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C--C-CC
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F--S-ND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~--~-~~   66 (201)
                      |+++|--|+++|-   .+..+++.|. +|+.++.+++.++.+.+.+...+ .++..+..|+.+..        .  . .+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG-FQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            4667777766552   4444555677 89999999999888888776655 37888999987531        0  0 25


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            68999876544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.13  E-value=0.38  Score=32.73  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=57.4

Q ss_pred             CcEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--C-CCCCCceeEEEecc
Q 028957            2 TSVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--L-PFSNDCFDVVIEKA   75 (201)
Q Consensus         2 ~~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~-~~~~~~~D~v~~~~   75 (201)
                      .+||--|++  -|..+.++++. |. +|+++.-+++..+.+++.    +.+.+. ...|...  . ....+.+|+|+-.-
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~vi-~~~~~~~~~~~~~~~~gvd~vid~v   98 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEVI-SREDVYDGTLKALSKQQWQGAVDPV   98 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEEE-EHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccceE-eccchhchhhhcccCCCceEEEecC
Confidence            357766643  36777777776 65 899999888777776653    332221 1122111  1 12345789988421


Q ss_pred             ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957           76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .                      ...+++..+.|+++|+++.+...
T Consensus        99 g----------------------g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          99 G----------------------GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             C----------------------THHHHHHHTTEEEEEEEEECCCS
T ss_pred             c----------------------HHHHHHHHHHhccCceEEEeecc
Confidence            1                      24678889999999999876544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.99  E-value=0.69  Score=33.36  Aligned_cols=72  Identities=13%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++.+.+.+.    .+..+++.|+.+..          -..+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            467777777665   34445556677 89999999988877776653    26788889987632          11256


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        81 idilinnAG~   90 (244)
T d1nffa_          81 LHVLVNNAGI   90 (244)
T ss_dssp             CCEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            8998876544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=88.96  E-value=0.16  Score=36.56  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=37.4

Q ss_pred             EEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCC------CccHH----HHHHHHHHHhhcccCCcEEEEE
Q 028957           52 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQ------PETVT----KVMAMLEGVHRVLKPDGLFISV  118 (201)
Q Consensus        52 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~------~~~~~----~~~~~l~~~~~~L~~gG~l~~~  118 (201)
                      +++.+|..++  .++++++|+|+++           +|++..      ....+    ...+.++++.++|+|+|.+++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitd-----------PPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVID-----------PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEEC-----------CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEEC-----------CCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            4677887652  3668899999974           444321      11122    2457888999999999998754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=87.87  E-value=1.6  Score=29.77  Aligned_cols=94  Identities=12%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             CCcEEEecCCC---ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc---cCCCC--------CCC
Q 028957            1 MTSVLELGCGN---SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---MLDLP--------FSN   65 (201)
Q Consensus         1 ~~~vLDlG~G~---G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~--------~~~   65 (201)
                      |.+||-+.+|+   |..+..+++. |. +|+++--+++..+...+.++..+.+.  ++.-+   .....        ...
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~--vi~~~~~~~~~~~~~v~~~~~~~g  105 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIKQSG  105 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE--EEeccccchhHHHHHHHHHHhhcc
Confidence            35677774444   4566666665 65 77777544444444444444555432  23222   11110        013


Q ss_pred             CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957           66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS  119 (201)
Q Consensus        66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  119 (201)
                      +.+|+|+-.     +             .    ...+....+.|+++|+++...
T Consensus       106 ~~vdvv~D~-----v-------------g----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         106 GEAKLALNC-----V-------------G----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             CCEEEEEES-----S-------------C----HHHHHHHHHTSCTTCEEEECC
T ss_pred             CCceEEEEC-----C-------------C----cchhhhhhhhhcCCcEEEEEC
Confidence            458888842     1             1    234566789999999988754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.70  E-value=0.91  Score=32.89  Aligned_cols=72  Identities=11%  Similarity=0.049  Sum_probs=48.8

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   .++..+++.|. +|+.+|.+++.++...+.+.    .++.+++.|+.+..          -..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG----DAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG----GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC----CceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            567787777765   34555556677 89999999887776655432    36788999987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        80 iDilVnnAg~   89 (254)
T d1hdca_          80 VDGLVNNAGI   89 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEecCcc
Confidence            8988876544

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.62  E-value=1.3  Score=32.40  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=47.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|   ..+..+++.|. +|+.+|.+++.++...+.+.    .++..+..|+.+..          -..+.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG----DNVLGIVGDVRSLEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC----CCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence            466777776554   23344445577 99999999988877666543    26788888987632          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        80 idilvnnAG~   89 (276)
T d1bdba_          80 IDTLIPNAGI   89 (276)
T ss_dssp             CCEEECCCCC
T ss_pred             cccccccccc
Confidence            8998876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.32  E-value=1.1  Score=32.30  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|   .++..+++.|. +|+.+|.+++.++.+.+..     ++..++..|+.+..          -..+.
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            567788887665   23444555677 8999999998887766543     36788899987632          11256


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        80 iDilVnnAG~   89 (250)
T d1ydea1          80 LDCVVNNAGH   89 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEecccc
Confidence            8998876553

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=0.14  Score=38.70  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             CcEEEecCCCChhhHHHHh----cCCCeEEEEEC----CHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCce
Q 028957            2 TSVLELGCGNSRLSEGLYN----DGITAITCIDL----SAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCF   68 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~----~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~   68 (201)
                      ++||-.| |+|.++..+++    .+. +|+++|.    .......... ..   .+++.++++|+.+..     +....+
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIER-LG---GKHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHH-HH---TSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHh-hc---CCCCEEEEeecCCHHHHHHHHhccCC
Confidence            4677666 67877777654    465 8999984    2222222221 22   247899999987642     233467


Q ss_pred             eEEEe
Q 028957           69 DVVIE   73 (201)
Q Consensus        69 D~v~~   73 (201)
                      |+|+-
T Consensus        75 d~ViH   79 (338)
T d1udca_          75 DTVIH   79 (338)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98884

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.92  E-value=1  Score=32.54  Aligned_cols=72  Identities=15%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|+++|   ..+..+++.|. +|+.+|.+++.++.+.+.+   + .++.++..|+.+..          -..+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~-~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G-PAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            456777776654   23444455576 8999999998887776654   2 36788899987632          01257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        80 iDilVnnAg~   89 (256)
T d1k2wa_          80 IDILVNNAAL   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEeeccc
Confidence            8998876554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.90  E-value=0.49  Score=34.41  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHh-hcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+. ..+ .++.+++.|+.+..          -..+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            456777776554   23444455677 89999998776655554443 223 36788999987632          1235


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        87 ~iDilVnnAg~   97 (260)
T d1h5qa_          87 PISGLIANAGV   97 (260)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCcEecccccc
Confidence            78988876543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.80  E-value=0.88  Score=27.78  Aligned_cols=64  Identities=19%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             cEEEecC-CCC--hhhHHHHhcCCCeEEEEECCH-HHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            3 SVLELGC-GNS--RLSEGLYNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~-G~G--~~~~~l~~~~~~~v~~vD~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +|.=+|. |+|  .++..+.+.|. +|.|.|... ...+..    ...   .+.+..+.... ..  ...|+|+.+..+
T Consensus        10 ~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L----~~~---Gi~v~~g~~~~-~i--~~~d~vV~S~AI   77 (96)
T d1p3da1          10 QIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRL----AQA---GAKIYIGHAEE-HI--EGASVVVVSSAI   77 (96)
T ss_dssp             EEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHH----HHT---TCEEEESCCGG-GG--TTCSEEEECTTS
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHH----HHC---CCeEEECCccc-cC--CCCCEEEECCCc
Confidence            4444554 344  45566667788 999999863 233322    233   34554444322 12  346888876543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.45  E-value=1.2  Score=31.90  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|-   ++..+++.|. +|+.+|.+++.++.+.+.+      +..++..|+.+..          -..+.
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            4667777766552   3444455677 8999999998877765532      4577888987632          11246


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        78 iDilVnnAG~   87 (242)
T d1ulsa_          78 LDGVVHYAGI   87 (242)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEECCcc
Confidence            8988876543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.01  E-value=2.4  Score=30.37  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=49.7

Q ss_pred             cE-EEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            3 SV-LELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         3 ~v-LDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      +| |--|++ +.++..+    ++.|. +|+.+|.+++.++.+.+.+...+ .++.++..|+.+..          -..+.
T Consensus         2 KValITGas-~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (255)
T d1gega_           2 KVALVTGAG-QGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKTLGG   78 (255)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEcCCc-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            44 555655 4444444    45577 89999999999988888777665 37888899987632          11367


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        79 iDilVnnAG~   88 (255)
T d1gega_          79 FDVIVNNAGV   88 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEecccc
Confidence            8999876543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=2.3  Score=31.37  Aligned_cols=75  Identities=7%  Similarity=0.046  Sum_probs=49.4

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCCC----------C
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLP----------F   63 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~----------~   63 (201)
                      |+++|--|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+....    -.++..+..|+.+..          -
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            5677777766542   3334455677 89999999988887776654321    236788899987632          1


Q ss_pred             CCCceeEEEeccc
Q 028957           64 SNDCFDVVIEKAT   76 (201)
Q Consensus        64 ~~~~~D~v~~~~~   76 (201)
                      ..+..|+++.+..
T Consensus        91 ~~G~iDiLVnnAg  103 (297)
T d1yxma1          91 TFGKINFLVNNGG  103 (297)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeEEEEeecc
Confidence            1257899887654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.95  E-value=0.45  Score=36.47  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=40.3

Q ss_pred             CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHH----------------HHHhhcCCCceEEEEcccCC
Q 028957            1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQ----------------ERLLLKGYKEVKVLEADMLD   60 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~----------------~~~~~~~~~~i~~~~~d~~~   60 (201)
                      |++||-.|+ +|.++..++.    .|. +|+++|.-........                .......-+++.++.+|+.+
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~-~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNY-EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcC-EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC
Confidence            688988874 7877766644    466 8999993222111111                11111111478999999876


Q ss_pred             CC-----CCCCceeEEEe
Q 028957           61 LP-----FSNDCFDVVIE   73 (201)
Q Consensus        61 ~~-----~~~~~~D~v~~   73 (201)
                      ..     +....+|+|+-
T Consensus        79 ~~~l~~~~~~~~~d~ViH   96 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVH   96 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHhhcchheec
Confidence            32     22335788873

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.80  E-value=3.9  Score=27.32  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CCcEEEecCCCChhhH-HHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957            1 MTSVLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM   77 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~-~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l   77 (201)
                      +++||=+|||.-.-+. ..+..+..+++.+.-+.+..+...+++....  ++.....|..    ....+|+++....+
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~~----~~~~~diiIN~tp~   89 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDSI----PLQTYDLVINATSA   89 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGGC----CCSCCSEEEECCCC
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhccc----cccccceeeecccc
Confidence            4689999997633222 2223344599999999988888877776543  4455554432    24678999975444

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.54  E-value=1  Score=32.54  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=47.7

Q ss_pred             CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|-   .+..+++.|. +|+.++.+ ++.++.+.+.+....-.++.++..|+.+..          -..+
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4666766665542   3344555677 89999986 566666665554332236788999987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        83 ~iDiLVnnAG~   93 (260)
T d1x1ta1          83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEeeccc
Confidence            78998876554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.50  E-value=2.2  Score=30.78  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=48.3

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND   66 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~   66 (201)
                      |+++|--|++.|   .++..+++.|. +|+.++.+ ++.++.+.+.+...+ .++..++.|+.+..          -..+
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            456676666655   23444555677 89999987 456666666666554 36788899987632          1125


Q ss_pred             ceeEEEecccc
Q 028957           67 CFDVVIEKATM   77 (201)
Q Consensus        67 ~~D~v~~~~~l   77 (201)
                      ..|+++.+...
T Consensus        85 ~iDiLVnnAG~   95 (261)
T d1geea_          85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEeecccee
Confidence            78998876544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.30  E-value=1.8  Score=29.45  Aligned_cols=89  Identities=15%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             cEEEecCC--CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEecccc
Q 028957            3 SVLELGCG--NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATM   77 (201)
Q Consensus         3 ~vLDlG~G--~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l   77 (201)
                      +||-.|+.  -|..+.++++. |. +|+++.-+++..+.+++.    +.+  .++.-+-.+.  .+....+|.++-    
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Gad--~vi~~~~~~~~~~l~~~~~~~vvD----  102 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GAS--RVLPRDEFAESRPLEKQVWAGAID----  102 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TEE--EEEEGGGSSSCCSSCCCCEEEEEE----
T ss_pred             cEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----ccc--cccccccHHHHHHHHhhcCCeeEE----
Confidence            56655532  35677777766 55 899999888887777643    221  2232222211  233456787652    


Q ss_pred             ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                       .+                 -...+....+.|+++|+++.+..
T Consensus       103 -~V-----------------gg~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         103 -TV-----------------GDKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             -SS-----------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -Ec-----------------chHHHHHHHHHhccccceEeecc
Confidence             22                 03467888999999999998654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.14  E-value=1.3  Score=31.89  Aligned_cols=72  Identities=14%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|--|++.|   ..+..+++.|. +|+.+|.+++.++.+.+.+.    .+..++..|+.+..          -..+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG----ERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC----TTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC----CCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            456776676554   23444455677 89999999988877766553    25677888877532          11257


Q ss_pred             eeEEEecccc
Q 028957           68 FDVVIEKATM   77 (201)
Q Consensus        68 ~D~v~~~~~l   77 (201)
                      .|+++.+...
T Consensus        81 iDilVnnAG~   90 (253)
T d1hxha_          81 LNVLVNNAGI   90 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCeEEecccc
Confidence            8999877654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.11  E-value=1.5  Score=31.26  Aligned_cols=109  Identities=13%  Similarity=0.064  Sum_probs=62.7

Q ss_pred             CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957            1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC   67 (201)
Q Consensus         1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~   67 (201)
                      |+++|-.|++.|   .++..+++.|. +|+.++.+.+.++...+.+   + .++.+++.|+.+..          -..+.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dls~~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---E-AEAIAVVADVSDPKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---C-SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            567777777654   23444455577 9999999998776554433   2 36788899987532          11257


Q ss_pred             eeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEecC
Q 028957           68 FDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVSFG  121 (201)
Q Consensus        68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~~  121 (201)
                      .|+++.+......     .|+...  ..++           .-.+.+.+.+.++.++.+++....
T Consensus        80 iDiLinnAg~~~~-----~~~~~~--~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          80 LHGVAHFAGVAHS-----ALSWNL--PLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             CCEEEEGGGGTTT-----TC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             ccEeccccccccc-----cchhhh--hccccccccccccccccccccccccccccccceeecccc
Confidence            8998876554321     111110  1112           123345556677777776665443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.55  E-value=2.9  Score=27.77  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957            1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT   76 (201)
Q Consensus         1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   76 (201)
                      +++||=+|+|.  .+..+    ...+..+++.+.-+.+..+...+.+.      ....  ++.++.-.-..+|+|++...
T Consensus        24 ~~~ilviGaG~--~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~------~~~~--~~~~~~~~l~~~Divi~ats   93 (159)
T d1gpja2          24 DKTVLVVGAGE--MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG------GEAV--RFDELVDHLARSDVVVSATA   93 (159)
T ss_dssp             TCEEEEESCCH--HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT------CEEC--CGGGHHHHHHTCSEEEECCS
T ss_pred             cCeEEEECCCH--HHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh------cccc--cchhHHHHhccCCEEEEecC
Confidence            46789998754  43333    34476689999988665554444331      2222  22222211247899997543


Q ss_pred             cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957           77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR  126 (201)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  126 (201)
                      ...       |.+    +    ...++.....-+.+..+++++...|...
T Consensus        94 s~~-------~ii----~----~~~i~~~~~~r~~~~~~~iiDlavPr~v  128 (159)
T d1gpja2          94 APH-------PVI----H----VDDVREALRKRDRRSPILIIDIANPRDV  128 (159)
T ss_dssp             SSS-------CCB----C----HHHHHHHHHHCSSCCCEEEEECCSSCSB
T ss_pred             CCC-------ccc----c----HhhhHHHHHhcccCCCeEEEeecCCCCc
Confidence            321       111    1    2333333333334455677777766443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=81.39  E-value=0.57  Score=34.64  Aligned_cols=69  Identities=19%  Similarity=0.217  Sum_probs=39.8

Q ss_pred             CcEEEecCCCChhhHHHH----hcCCCeEEEEE-CCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEE
Q 028957            2 TSVLELGCGNSRLSEGLY----NDGITAITCID-LSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVV   71 (201)
Q Consensus         2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD-~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v   71 (201)
                      ++||-.| |+|.++..+.    +.+. +|+++| ++..........+..  .++++++.+|+.+..     +...++|+|
T Consensus         1 ~KILVTG-atGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~--~~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           1 AKLLITG-GCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSS--LGNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhc--cCCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            4677554 6787775554    4566 899998 332222222222222  247899999987632     222356888


Q ss_pred             Eec
Q 028957           72 IEK   74 (201)
Q Consensus        72 ~~~   74 (201)
                      +-.
T Consensus        77 ih~   79 (338)
T d1orra_          77 FHL   79 (338)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            853

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=0.076  Score=35.76  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=51.8

Q ss_pred             CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957            2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV   79 (201)
Q Consensus         2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~   79 (201)
                      ++|+=+|+|. | .++..|++.|. +|+.++.++......    .............-....+.....+|+|+..-    
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v----   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFLATSDLLLVTL----   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHHHTCSEEEECS----
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhh----ccccCCccccccccccchhhhhcccceEEEee----
Confidence            5788899986 3 45555566677 899998765311100    00000000000000000111124679988531    


Q ss_pred             eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957           80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF  120 (201)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  120 (201)
                                    .......+++.+...+.++..++....
T Consensus        72 --------------ka~~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          72 --------------KAWQVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             --------------CGGGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             --------------cccchHHHHHhhccccCcccEEeeccC
Confidence                          123567889999999999888776544