Citrus Sinensis ID: 028960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
MGGPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSWSPN
cccccccccEEEEEEccHHHHHccccEEEEccccEEcccccEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEEcccEEEEEEccHHHHcccccEEEEcccccEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccc
cccccccccccccccccHHHHHcccccEEEEEcccccccccEEEEEEEEEEEcccccccccEEEcccccccccccccccEEEEEEccccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEccccccccEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHccccccccccccccc
mggpkkappienrlpctlEELYKGTTKKIKISREIVDingntikvEEILtvdvkpgwkkgtritfeekgnvqqnvkpadvvfivdekphsvftrdgndLIVTRTITlgealegypvrlttldgrslnipidnvihpnyeetvpregmpiqnepskrgnlkikfnikfppsltaEQKAGIKFLQLLNRclpcfglfrswspn
mggpkkappienrlpcTLEELYkgttkkikisreivdingntikveeiltvdvkpgwkkgtritfeekgnvqqnvkpADVVFIVDEkphsvftrdgndliVTRTItlgealegypVRLTtldgrslnipiDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSWSPN
MGGPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSWSPN
*************LPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNY********************LKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSW***
***********NRLPCTLEELYKGTTKKIKISREIVD*****IKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGL*******
MGGPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSWSPN
********PIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN***************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGGPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRCLPCFGLFRSWSPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query201 2.2.26 [Sep-21-2011]
Q80Y75316 DnaJ homolog subfamily B yes no 0.900 0.572 0.484 3e-41
P59910316 DnaJ homolog subfamily B yes no 0.900 0.572 0.478 6e-41
Q9QYJ3340 DnaJ homolog subfamily B no no 0.895 0.529 0.422 7e-36
P25685340 DnaJ homolog subfamily B no no 0.815 0.482 0.460 7e-36
Q09912379 Protein psi1 OS=Schizosac yes no 0.840 0.445 0.431 9e-36
Q3MI00340 DnaJ homolog subfamily B no no 0.815 0.482 0.460 1e-35
Q5BIP8348 DnaJ homolog subfamily B no no 0.885 0.511 0.389 1e-34
O89114348 DnaJ homolog subfamily B no no 0.885 0.511 0.389 1e-34
O75953348 DnaJ homolog subfamily B no no 0.885 0.511 0.389 1e-34
Q5R8J8337 DnaJ homolog subfamily B no no 0.900 0.537 0.377 5e-34
>sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1 Back     alignment and function desciption
 Score =  167 bits (424), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 130/190 (68%), Gaps = 9/190 (4%)

Query: 2   GGPKKAPPIENRLPCTLEELYKGTTKKIKISREIV--DINGNTIKVEEILTVDVKPGWKK 59
           G  K+ PPIE  L  +LE+L+ G TKKIKISR ++  D   +TIK ++ILT+DV+PGW++
Sbjct: 132 GVQKQDPPIERDLYLSLEDLFFGCTKKIKISRRVLNEDRYSSTIK-DKILTIDVRPGWRQ 190

Query: 60  GTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLT 119
           GTRITFE++G+   N+ PAD++FIV EK H  F R+ ++L     I LG+AL    V + 
Sbjct: 191 GTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVK 250

Query: 120 TLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGI 179
           TLD R LNIPI++++HP Y + VP EGMP+   PSK+G+L I F+I+FP  LT ++K   
Sbjct: 251 TLDDRLLNIPINDIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKK--- 307

Query: 180 KFLQLLNRCL 189
              Q+L + L
Sbjct: 308 ---QMLRQAL 314
May be involved in inhibiting testis spermatogenesis apoptosis.
Mus musculus (taxid: 10090)
>sp|P59910|DJB13_HUMAN DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1 Back     alignment and function description
>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3 Back     alignment and function description
>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4 Back     alignment and function description
>sp|Q09912|PSI1_SCHPO Protein psi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psi1 PE=2 SV=2 Back     alignment and function description
>sp|Q3MI00|DNJB1_BOVIN DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3 Back     alignment and function description
>sp|Q5BIP8|DNJB5_BOVIN DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1 Back     alignment and function description
>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1 Back     alignment and function description
>sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=1 SV=1 Back     alignment and function description
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
359483833 350 PREDICTED: dnaJ homolog subfamily B memb 0.895 0.514 0.772 3e-75
359483831 342 PREDICTED: dnaJ homolog subfamily B memb 0.895 0.526 0.772 3e-75
297740428301 unnamed protein product [Vitis vinifera] 0.895 0.598 0.772 4e-75
255553625 342 Protein SIS1, putative [Ricinus communis 0.900 0.529 0.734 2e-74
356517478 352 PREDICTED: dnaJ homolog subfamily B memb 0.900 0.514 0.751 4e-74
359806164 349 uncharacterized protein LOC100778672 [Gl 0.910 0.524 0.735 4e-73
357446733 340 DnaJ homolog subfamily B member [Medicag 0.895 0.529 0.733 1e-72
449433802 349 PREDICTED: dnaJ homolog subfamily B memb 0.895 0.515 0.738 2e-72
224092930 345 predicted protein [Populus trichocarpa] 0.890 0.518 0.754 4e-72
224133414 354 predicted protein [Populus trichocarpa] 0.900 0.511 0.712 5e-72
>gi|359483833|ref|XP_002278979.2| PREDICTED: dnaJ homolog subfamily B member 13 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/180 (77%), Positives = 159/180 (88%)

Query: 3   GPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTR 62
           GP+KAPPIEN LPC+LE+LYKGTTKK+KISREI+D +G TI VEEILT+++KPGWKKGT+
Sbjct: 168 GPRKAPPIENTLPCSLEDLYKGTTKKMKISREIMDASGKTIPVEEILTIEIKPGWKKGTK 227

Query: 63  ITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLD 122
           ITF EKGN Q NV PAD+VFI+DEKPHS FTR+GNDL+VT+ ITL EAL GY V LTTLD
Sbjct: 228 ITFPEKGNEQPNVIPADLVFIIDEKPHSKFTREGNDLVVTQKITLAEALTGYTVHLTTLD 287

Query: 123 GRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182
           GRSL+IPI+N IHPNYEE VP+EGMPI  EPSKRGNL+IKFNIKFP  LTAEQK+GIK L
Sbjct: 288 GRSLSIPINNAIHPNYEEVVPKEGMPIPKEPSKRGNLRIKFNIKFPTRLTAEQKSGIKKL 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483831|ref|XP_003633023.1| PREDICTED: dnaJ homolog subfamily B member 13 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740428|emb|CBI30610.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255553625|ref|XP_002517853.1| Protein SIS1, putative [Ricinus communis] gi|223542835|gb|EEF44371.1| Protein SIS1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517478|ref|XP_003527414.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|359806164|ref|NP_001241198.1| uncharacterized protein LOC100778672 [Glycine max] gi|255635480|gb|ACU18092.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357446733|ref|XP_003593642.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|124360726|gb|ABN08703.1| Heat shock protein DnaJ [Medicago truncatula] gi|355482690|gb|AES63893.1| DnaJ homolog subfamily B member [Medicago truncatula] Back     alignment and taxonomy information
>gi|449433802|ref|XP_004134686.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Cucumis sativus] gi|449479269|ref|XP_004155554.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224092930|ref|XP_002309759.1| predicted protein [Populus trichocarpa] gi|222852662|gb|EEE90209.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133414|ref|XP_002328036.1| predicted protein [Populus trichocarpa] gi|222837445|gb|EEE75824.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query201
TAIR|locus:2054809337 AT2G20560 [Arabidopsis thalian 0.900 0.537 0.712 1.8e-69
TAIR|locus:2121368348 AT4G28480 [Arabidopsis thalian 0.885 0.511 0.691 4.5e-66
TAIR|locus:2054799284 AT2G20550 [Arabidopsis thalian 0.900 0.637 0.668 1.8e-64
TAIR|locus:2097638323 AT3G08910 [Arabidopsis thalian 0.880 0.547 0.638 1.6e-61
TAIR|locus:2179127335 AT5G01390 [Arabidopsis thalian 0.875 0.525 0.619 9.3e-59
TAIR|locus:2179429347 AT5G25530 [Arabidopsis thalian 0.880 0.510 0.587 4.2e-56
TAIR|locus:2825170331 AT1G59725 [Arabidopsis thalian 0.875 0.531 0.579 3.5e-52
TAIR|locus:2012743349 AT1G10350 [Arabidopsis thalian 0.870 0.501 0.562 5.1e-51
TAIR|locus:2097880350 AT3G47940 [Arabidopsis thalian 0.890 0.511 0.530 8.3e-51
UNIPROTKB|F1SUR7316 DNAJB13 "Uncharacterized prote 0.865 0.550 0.508 1.2e-42
TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 129/181 (71%), Positives = 155/181 (85%)

Query:     2 GGPKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGT 61
             GG +KA PIEN+LPC+LE+LYKGTTKK++ISREI D++G T++VEEILT+DVKPGWKKGT
Sbjct:   155 GGARKAAPIENKLPCSLEDLYKGTTKKMRISREIADVSGKTMQVEEILTIDVKPGWKKGT 214

Query:    62 RITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTL 121
             +ITF EKGN Q  V PAD+VFI+DEKPH VFTR+GNDLIVT+ I+L EAL GY V LTTL
Sbjct:   215 KITFPEKGNEQPGVIPADLVFIIDEKPHPVFTREGNDLIVTQKISLVEALTGYTVNLTTL 274

Query:   122 DGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKF 181
             DGR L IP+ NV+HP YEE VP+EGMP+Q + +KRGNL+IKFNIKFP  LT+EQK G+K 
Sbjct:   275 DGRRLTIPVTNVVHPEYEEVVPKEGMPLQKDQTKRGNLRIKFNIKFPTRLTSEQKTGVKK 334

Query:   182 L 182
             L
Sbjct:   335 L 335
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS;RCA
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054799 AT2G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097880 AT3G47940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUR7 DNAJB13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 5e-45
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 3e-29
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 4e-25
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 8e-21
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 4e-17
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-14
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 3e-12
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 7e-12
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 9e-12
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 8e-11
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 8e-10
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-09
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 4e-09
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 5e-09
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 1e-08
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 3e-08
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 4e-08
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 6e-08
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 1e-07
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 3e-07
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 1e-06
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 2e-06
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-06
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 6e-06
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 3e-05
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 4e-05
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 3e-04
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 3e-04
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 0.001
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 0.004
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 0.004
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  146 bits (371), Expect = 5e-45
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 8   PPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEE 67
             +   L  TLEE Y G  K+IKI R++       ++ ++ LTV +  G   G R+    
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT-----RVREKKTLTVKIPAGVDDGQRLRLRG 55

Query: 68  KGNV-QQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSL 126
           +G+       P D+  ++  KPH VF RDGNDL     I+L EAL G  + + TL G  +
Sbjct: 56  EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KV 114

Query: 127 NIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSL 171
            + I     P     +  +GMP       RG+L ++  ++FP  L
Sbjct: 115 KLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 201
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.97
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.91
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.35
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.3
PRK14282369 chaperone protein DnaJ; Provisional 99.3
PRK14290365 chaperone protein DnaJ; Provisional 99.23
PRK14294366 chaperone protein DnaJ; Provisional 99.21
PRK14285365 chaperone protein DnaJ; Provisional 99.2
PRK14299291 chaperone protein DnaJ; Provisional 99.18
PRK14298377 chaperone protein DnaJ; Provisional 99.17
PRK10767371 chaperone protein DnaJ; Provisional 99.17
PRK14284391 chaperone protein DnaJ; Provisional 99.16
PRK14287371 chaperone protein DnaJ; Provisional 99.13
PRK14300372 chaperone protein DnaJ; Provisional 99.12
PRK14288369 chaperone protein DnaJ; Provisional 99.11
PRK14301373 chaperone protein DnaJ; Provisional 99.11
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.11
PRK14279392 chaperone protein DnaJ; Provisional 99.1
PRK14295389 chaperone protein DnaJ; Provisional 99.09
PRK14286372 chaperone protein DnaJ; Provisional 99.07
PRK14291382 chaperone protein DnaJ; Provisional 99.07
PRK14276380 chaperone protein DnaJ; Provisional 99.05
PRK14293374 chaperone protein DnaJ; Provisional 99.04
PRK14281397 chaperone protein DnaJ; Provisional 99.03
PRK14280376 chaperone protein DnaJ; Provisional 99.03
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.02
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.01
PRK14297380 chaperone protein DnaJ; Provisional 99.0
PRK14278378 chaperone protein DnaJ; Provisional 98.99
PRK14292371 chaperone protein DnaJ; Provisional 98.97
PRK14277386 chaperone protein DnaJ; Provisional 98.96
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.93
PRK14283378 chaperone protein DnaJ; Provisional 98.92
PRK14296372 chaperone protein DnaJ; Provisional 98.92
PRK14289386 chaperone protein DnaJ; Provisional 98.89
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 98.83
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.63
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 98.22
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.87
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 90.75
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-46  Score=317.46  Aligned_cols=197  Identities=26%  Similarity=0.436  Sum_probs=181.4

Q ss_pred             CCCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c--------------------
Q 028960            3 GPKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------   41 (201)
Q Consensus         3 ~p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------   41 (201)
                      +|++|.|+.+.|+|||+|||+|+++.|.+.+...|    |+|                 .                    
T Consensus       111 ~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~  190 (371)
T COG0484         111 RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN  190 (371)
T ss_pred             CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc
Confidence            47799999999999999999999999999999876    222                 0                    


Q ss_pred             -----------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEE
Q 028960           42 -----------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTR  103 (201)
Q Consensus        42 -----------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~  103 (201)
                                       ++.+.++++|+||+|+.+|++|+++|+|++.+++ .+|||||.|.+++|+.|.|+|+|||+++
T Consensus       191 G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~  270 (371)
T COG0484         191 GTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEV  270 (371)
T ss_pred             cceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEecc
Confidence                             6889999999999999999999999999998866 6899999999999999999999999999


Q ss_pred             EeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q 028960          104 TITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQ  183 (201)
Q Consensus       104 ~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~  183 (201)
                      +|++.+|++|++++|+|+||+ ++|+||+++++|++++|+|+|||..+ +..+|||||++.|++|++|+.+|+++|++++
T Consensus       271 ~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~  348 (371)
T COG0484         271 PISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEFA  348 (371)
T ss_pred             ccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence            999999999999999999998 99999999999999999999999866 4668999999999999999999999999999


Q ss_pred             hhcC-----CCCcchhccccCCC
Q 028960          184 LLNR-----CLPCFGLFRSWSPN  201 (201)
Q Consensus       184 ~~~~-----~~~~~~~~~~~~~~  201 (201)
                      +...     +..+|+++++||.+
T Consensus       349 ~~~~~~~~~~~~~~~k~k~~f~~  371 (371)
T COG0484         349 KSLGEGPEQSPGFFDKLKNFFKG  371 (371)
T ss_pred             HhhccccccChhhhHHhHhhccC
Confidence            9642     12699999999864

>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 7e-37
2qld_A183 Human Hsp40 Hdj1 Length = 183 8e-37
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 2e-36
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 2e-32
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 2e-26
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 2e-26
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 2e-17
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 6e-06
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 5   KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEE-ILTVDVKPGWKKGTRI 63
           K+ PP+ + L  +LEE+Y G TKK+KIS + ++ +G +I+ E+ ILT++VK GWK+GT+I
Sbjct: 9   KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 68
Query: 64  TFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDG 123
           TF ++G+   N  PAD+VF++ +KPH++F RDG+D+I    I+L EAL G  V + TLDG
Sbjct: 69  TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 128
Query: 124 RSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFP 168
           R++ +   +VI P     VP EG+P+   P KRG+L I+F + FP
Sbjct: 129 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 173
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query201
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 5e-84
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 9e-84
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 4e-79
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 2e-39
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 5e-06
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 5e-33
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 3e-23
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 9e-10
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
 Score =  245 bits (628), Expect = 5e-84
 Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 4/182 (2%)

Query: 6   KAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITF 65
                E  L  TLEELY G  KKIK++R+           E I+ V++KPGWK GT++T+
Sbjct: 2   APRSHEVPLLVTLEELYLGKRKKIKVTRKRFI-EHKVRNEENIVEVEIKPGWKDGTKLTY 60

Query: 66  EEKGNVQQ-NVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGR 124
             +G+ +     P D+V I+  K H  FTRD   LI+  TI L  AL G+   +TTLD R
Sbjct: 61  SGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNR 120

Query: 125 SLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQL 184
           +L IPI  +++P   + VP EGMPI+N+P ++G+L ++F+I FP SLT EQK  IK  + 
Sbjct: 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK--EA 178

Query: 185 LN 186
           L+
Sbjct: 179 LD 180
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.96
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.95
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.47
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.44
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 99.24
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 99.23
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 99.22
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 99.22
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.08
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 96.62
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
Probab=100.00  E-value=3.6e-50  Score=316.93  Aligned_cols=177  Identities=44%  Similarity=0.716  Sum_probs=166.8

Q ss_pred             CCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEcccccc-CCCCCCeeEEEEE
Q 028960            6 KAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNV-QQNVKPADVVFIV   84 (201)
Q Consensus         6 kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~-~~~~~~GDl~v~i   84 (201)
                      +|+|+.++++|||+|||+|+++++.+.+.+.|++| .+.+.++++|+||+|+++|++|+++|+|++ .+++.+|||||.|
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g-~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i   80 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHK-VRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLII   80 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTE-EEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCc-eEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEE
Confidence            48999999999999999999999999999999886 678889999999999999999999999998 5666899999999


Q ss_pred             EecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEE
Q 028960           85 DEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFN  164 (201)
Q Consensus        85 ~v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~  164 (201)
                      ++++|+.|+|+|+||+++++|++++|++|++++|+|+||+.+.|++|+++++|++++|+|+|||..++++.+|||||+|+
T Consensus        81 ~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~  160 (180)
T 2q2g_A           81 QTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFD  160 (180)
T ss_dssp             EECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEE
T ss_pred             EEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence            99999999999999999999999999999999999999988999999999999999999999998765567999999999


Q ss_pred             EECCCCCCHHHHHHHHHHH
Q 028960          165 IKFPPSLTAEQKAGIKFLQ  183 (201)
Q Consensus       165 v~~P~~l~~~~~~~l~~~~  183 (201)
                      |.||++||++|+++|++++
T Consensus       161 V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          161 ICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             EECCSCCCHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHhc
Confidence            9999999999999999875
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 201
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 2e-22
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 3e-17
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 1e-16
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 2e-11
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.6 bits (209), Expect = 2e-22
 Identities = 35/88 (39%), Positives = 52/88 (59%)

Query: 92  FTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQN 151
           F RDG+DLI T  ++  E+L G+   + T+DGR+L +     + P+   T P +GMP   
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 152 EPSKRGNLKIKFNIKFPPSLTAEQKAGI 179
            PS+RGNL +K+ + +P SL   QK  I
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query201
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.95
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.9
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.84
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.8
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.52
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.45
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.4
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.04
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-29  Score=172.92  Aligned_cols=90  Identities=39%  Similarity=0.715  Sum_probs=85.9

Q ss_pred             ceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCC
Q 028960           91 VFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPS  170 (201)
Q Consensus        91 ~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~  170 (201)
                      .|+|+|+||+++++|++.+|++|++++|+|+||+.+.|++|+++++|+.++|+|+|||..++++.+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            49999999999999999999999999999999998999999999999999999999999876778999999999999999


Q ss_pred             CCHHHHHHHH
Q 028960          171 LTAEQKAGIK  180 (201)
Q Consensus       171 l~~~~~~~l~  180 (201)
                      ||++|+++|+
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999998873
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure