Citrus Sinensis ID: 028987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Secondary Structure (PSIPRED)
ccEEccccccccccEEEEEEcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccHHccccccEEccccccEEEEEEEEcccccccccccccccccEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEccEEEEEEccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccEEEEEccccEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccEEEEEccccccccccccEEEEcccccEEEEEEEEcHHHcccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
MGMVFGKisvetpkyeviQSTFDYEIRKYAPSVVaevtydpstfkgnkdggfSVLANYIGalgnpqntkpekiamtapvitksspeeekiamtapvvtksdekkMVTMQFVlpekyqkaeeapkpvderVVIREEGERKYGVVKFggvasdevVGEKVDKLKKSLEKDGYKVVGQFLLarynppwtlppfrtnevmipve
Flexible Loop (DISEMBL)
mgmvfgkisvetpkyeVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALgnpqntkpekiAMTApvitksspeeekiamtapvvtksdekKMVTMQFVLpekyqkaeeapkpvdervvireegerkygvvkfggvasdevvgeKVDKLkkslekdgykVVGQFLLArynppwtlppfrtnevmipve
Low Complexity Region (SEG)
MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Disordered region (IsUnstruct)
***VFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALG******************************************************************VVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTN*******
Disordered Region (DISOPRED)
*****GKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPS****N**GGFSVLANYIGALGN**********MTAPVITKSSPEEEK***********DEKKMVTMQFVLPEK************ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Disordered Region (DISEMBL)
MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQ********VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Disordered Region (DISPRO)
*GMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9SR77	309	Heme-binding-like protein	no	no	0.92	0.595	0.371	1e-16
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.845	0.824	0.273	1e-05
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.775	0.756	0.267	6e-05

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 107/199 (53%), Gaps = 15/199 (7%)

Query: 10  VETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGG---FSVLANYIGALGNPQ 66
           +ET  + V+  T  YEIR+  P  VAE T  P     +  G    F+VLA Y+      +
Sbjct: 114 LETMNFRVLFRTDKYEIRQVEPYFVAE-TIMPGETGFDSYGASKSFNVLAEYLFG----K 168

Query: 67  NTKPEKIAMTAPVIT-KSSPEEEKIAMTAPVVT-KSDEKKMVTMQFVLPEKYQKAEEAPK 124
           NT  EK+ MT PV+T K     EK+ MT PV+T K+ ++    M FV+P KY      P 
Sbjct: 169 NTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKY--GSNLPL 226

Query: 125 PVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDG-YKVVG--QFLLARY 181
           P D  V I++   +   VV F G  +DE +  +  +L+++L+ D  ++V     F +A+Y
Sbjct: 227 PKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQY 286

Query: 182 NPPWTLPPFRTNEVMIPVE 200
           NPP+TLP  R NEV + VE
Sbjct: 287 NPPFTLPFMRRNEVSLEVE 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)

Query: 10  VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
           VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI      
Sbjct: 20  VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG---- 75

Query: 66  QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
           +N K  KI MTAPV +   P     +           +  +T+   +P + Q   + P+P
Sbjct: 76  KNEKEMKIKMTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 122

Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
           ++  V I +  E    V  F G +S +   E++  L   L +DG KV  +  +  A YN 
Sbjct: 123 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 181

Query: 184 PWTLPPFRTNEVMI 197
           P  L   R NEV +
Sbjct: 182 PVKL-LNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.

Homo sapiens (taxid: 9606)

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 24  YEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKS 83
           YEIR Y P+       +   +      GF+ L  YI      +N K  KI +TAPV +  
Sbjct: 38  YEIRHYGPAKWVSTCVESLDWDSAIQTGFTKLNGYIQG----KNEKEMKIKLTAPVTSYV 93

Query: 84  SPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVV 143
            P     +           +  +T+   +P + Q   + P+P +  V I +  E    V 
Sbjct: 94  EPGSSPFS-----------ESTITISLYIPSEQQP--DPPRPSESDVFIEDRAEMTVFVR 140

Query: 144 KFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNPPWTLPPFRTNEVMI 197
            F G +S +   E++  L   L ++G KV  +  F  A Y+ P+ L   R NEV +
Sbjct: 141 SFDGFSSGQKNQEQLLTLANILREEG-KVFNEKVFYTAGYSSPFQLLD-RNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
357469073	202	Heme-binding-like protein [Medicago trun	0.99	0.980	0.823	1e-88
224138978	203	predicted protein [Populus trichocarpa]	1.0	0.985	0.802	9e-88
359481702	200	PREDICTED: heme-binding-like protein At3	0.985	0.985	0.778	4e-86
255573923	201	protein with unknown function [Ricinus c	0.99	0.985	0.758	8e-84
356496138	213	PREDICTED: heme-binding-like protein At3	1.0	0.938	0.769	1e-83
255639070	213	unknown [Glycine max]	1.0	0.938	0.760	1e-82
449483425	198	PREDICTED: heme-binding-like protein At3	0.98	0.989	0.742	8e-80
297823673	224	soul heme-binding family protein [Arabid	0.985	0.879	0.700	2e-76
13877685	215	Unknown protein [Arabidopsis thaliana] g	0.985	0.916	0.674	3e-75
30687330	225	SOUL heme-binding-like protein [Arabidop	0.985	0.875	0.674	3e-75

>gi|357469073|ref|XP_003604821.1| Heme-binding-like protein [Medicago truncatula] gi|355505876|gb|AES87018.1| Heme-binding-like protein [Medicago truncatula]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 179/204 (87%), Gaps = 6/204 (2%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMVFGKI VETPKYEV ++T DYEIR YAPSV AEVTYDPS FKGNKDGGF VLANYIG
Sbjct: 1   MGMVFGKIGVETPKYEVTKTTQDYEIRIYAPSVAAEVTYDPSQFKGNKDGGFMVLANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK----KMVTMQFVLPEKY 116
           ALGNPQNTKPEKIAMTAPVITK S E  KIAMTAPVVTKS E+    KMVTMQF+LP  Y
Sbjct: 61  ALGNPQNTKPEKIAMTAPVITKGSAE--KIAMTAPVVTKSSEEGERNKMVTMQFILPSSY 118

Query: 117 QKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQF 176
           +KAEEAPKP DERVVIREEGERKYGVVKF GVASDEVV EKV+KL+ SLE+DG+KV+G F
Sbjct: 119 EKAEEAPKPTDERVVIREEGERKYGVVKFSGVASDEVVKEKVEKLRLSLERDGFKVIGDF 178

Query: 177 LLARYNPPWTLPPFRTNEVMIPVE 200
           LL RYNPPWTLP FRTNEVMIP+E
Sbjct: 179 LLGRYNPPWTLPMFRTNEVMIPIE 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138978|ref|XP_002322949.1| predicted protein [Populus trichocarpa] gi|222867579|gb|EEF04710.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 163/203 (80%), Positives = 181/203 (89%), Gaps = 3/203 (1%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMV G+I+VETP+YEVIQS+ DYEIRKYAPSV+AEVTYDPS F G KDGGF VLANYIG
Sbjct: 1   MGMVLGRITVETPEYEVIQSSNDYEIRKYAPSVLAEVTYDPSQFDGKKDGGFMVLANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTK---SDEKKMVTMQFVLPEKYQ 117
           ALG PQNTKPEKIAMTAPVITK+    EKIAMTAPVVTK    + +KMVTMQFVLP KY+
Sbjct: 61  ALGYPQNTKPEKIAMTAPVITKTGGGSEKIAMTAPVVTKEGSGEGEKMVTMQFVLPAKYK 120

Query: 118 KAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFL 177
           KAEEAPKPVDERVVIREEG RKYGVVKFGGVA+++ V E+V+KLKKSLE+DG KV+G+FL
Sbjct: 121 KAEEAPKPVDERVVIREEGVRKYGVVKFGGVATEQAVAERVEKLKKSLERDGLKVIGEFL 180

Query: 178 LARYNPPWTLPPFRTNEVMIPVE 200
           LARYNPPWTLPP RTNEVMIP+E
Sbjct: 181 LARYNPPWTLPPLRTNEVMIPIE 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481702|ref|XP_003632661.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera] gi|147858745|emb|CAN82905.1| hypothetical protein VITISV_007253 [Vitis vinifera]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/203 (77%), Positives = 183/203 (90%), Gaps = 6/203 (2%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMVFGKI VETPK++VIQS+ DYEIRKY P+V+AEVTYDPS F+G+KDGGF++LANYIG
Sbjct: 1   MGMVFGKICVETPKFQVIQSSADYEIRKYPPTVIAEVTYDPSQFRGDKDGGFTLLANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK---KMVTMQFVLPEKYQ 117
           ALGNPQNTKPEKI MTAPV+TK +   EKIAMTAPVVTKS E    K VTMQF+LP KY 
Sbjct: 61  ALGNPQNTKPEKIEMTAPVVTKYA---EKIAMTAPVVTKSGEGGEGKTVTMQFLLPSKYT 117

Query: 118 KAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFL 177
           KAEEAP+PVDERVVIREEGERKYGVVKFGGVA+++VVG KV+ L+KSLE+DG+K++G+F+
Sbjct: 118 KAEEAPRPVDERVVIREEGERKYGVVKFGGVATEKVVGAKVESLEKSLERDGFKLIGEFV 177

Query: 178 LARYNPPWTLPPFRTNEVMIPVE 200
           LARYNPPWTLP FRTNEVMIP+E
Sbjct: 178 LARYNPPWTLPAFRTNEVMIPIE 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573923|ref|XP_002527880.1| protein with unknown function [Ricinus communis] gi|223532731|gb|EEF34511.1| protein with unknown function [Ricinus communis]

 Score =  315 bits (806), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 183/203 (90%), Gaps = 5/203 (2%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MG+VFGKI+VETPKYEVI+S  +YEIRKYAP+V+A+VTYD + FKG+KDGGF VLANYIG
Sbjct: 1   MGLVFGKITVETPKYEVIESLSEYEIRKYAPAVLAQVTYDRTQFKGDKDGGFMVLANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTK---SDEKKMVTMQFVLPEKYQ 117
           A+GNP NTKPEKIAMTAPVITKS    EKIAMTAPVVTK     +   VTMQF+LP+KY+
Sbjct: 61  AVGNPHNTKPEKIAMTAPVITKSG--GEKIAMTAPVVTKEGGGGDNTTVTMQFLLPDKYK 118

Query: 118 KAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFL 177
           KAE+APKP DERVVI+EEGE+KYGVVKFGGVA+++VV EKVDKLK++LE+DG+K++G+F+
Sbjct: 119 KAEDAPKPTDERVVIKEEGEKKYGVVKFGGVATEQVVQEKVDKLKQNLERDGHKLIGEFV 178

Query: 178 LARYNPPWTLPPFRTNEVMIPVE 200
           LARYNPPWTLPPFRTNEVMIP+E
Sbjct: 179 LARYNPPWTLPPFRTNEVMIPIE 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496138|ref|XP_003516927.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/213 (76%), Positives = 178/213 (83%), Gaps = 13/213 (6%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MG+VFGKI+VET KYEVI+ST +YEIRKYAPSVVAEVTYDPS FKGNKDGGF +LANYIG
Sbjct: 1   MGLVFGKITVETAKYEVIKSTSEYEIRKYAPSVVAEVTYDPSQFKGNKDGGFMILANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEE-----EKIAMTAPVVTKS--------DEKKMVT 107
           A+G PQNTKPEKIAMTAPVITK S        EKIAMTAPVVTK            KMVT
Sbjct: 61  AVGKPQNTKPEKIAMTAPVITKDSVGGGGSDGEKIAMTAPVVTKEGGGEGEEGKRNKMVT 120

Query: 108 MQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEK 167
           MQFVLP  Y KAEEAPKP DERVVIREEG RKYGVVKFGGVAS++VV E+V+KL++SLEK
Sbjct: 121 MQFVLPAVYGKAEEAPKPTDERVVIREEGLRKYGVVKFGGVASEQVVRERVEKLRESLEK 180

Query: 168 DGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
           DG+KVVG FLL RYNPPWT+P FRTNEVMIPVE
Sbjct: 181 DGFKVVGDFLLGRYNPPWTIPAFRTNEVMIPVE 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639070|gb|ACU19835.1| unknown [Glycine max]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/213 (76%), Positives = 176/213 (82%), Gaps = 13/213 (6%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MG+VFGKI+VET KYE I+ST +YEIRKYAPSVV EVTYDPS FKGNKDGGF +LANYIG
Sbjct: 1   MGLVFGKITVETAKYEAIKSTSEYEIRKYAPSVVVEVTYDPSQFKGNKDGGFMILANYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEE-----EKIAMTAPVVTKS--------DEKKMVT 107
           A+G PQNTKPEKIAMTAPVITK S        EKIAMTAPVVTK            KMVT
Sbjct: 61  AVGKPQNTKPEKIAMTAPVITKDSVGGGGSDGEKIAMTAPVVTKEGGGEGEEGRRNKMVT 120

Query: 108 MQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEK 167
           MQFVLP  Y KAEEAPKP DERVVIREEG RKYGVVKFGGVAS++VV E+V+KL++SLEK
Sbjct: 121 MQFVLPAVYGKAEEAPKPTDERVVIREEGLRKYGVVKFGGVASEQVVRERVEKLRESLEK 180

Query: 168 DGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
           DG+KVVG FLL RYNPPWT+P FRTNEVMIPVE
Sbjct: 181 DGFKVVGDFLLGRYNPPWTIPAFRTNEVMIPVE 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483425|ref|XP_004156587.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 172/202 (85%), Gaps = 6/202 (2%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MG++ GKISVETPKYE++QST DYEIRKY PSVVAEV YDP+ F+GNKDGGF+VLA YIG
Sbjct: 1   MGLILGKISVETPKYELVQSTSDYEIRKYEPSVVAEVAYDPTQFRGNKDGGFTVLAKYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK--KMVTMQFVLPEKYQK 118
           A+G PQN K EK+AMTAPVITKS    EKI+MTAPVVT+      K VTMQFVLP KY+K
Sbjct: 61  AIGEPQNIKSEKVAMTAPVITKS----EKISMTAPVVTEGGGGEGKPVTMQFVLPSKYKK 116

Query: 119 AEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLL 178
           AEEAPKP DERVVI+EEGERK  VV+F G+A++ VV EKV+KLKKSLEKDG+KV+G ++L
Sbjct: 117 AEEAPKPADERVVIKEEGERKLAVVRFSGIATEGVVAEKVEKLKKSLEKDGHKVIGDYVL 176

Query: 179 ARYNPPWTLPPFRTNEVMIPVE 200
           ARYNPPWTLP  RTNEVMIPVE
Sbjct: 177 ARYNPPWTLPSLRTNEVMIPVE 198

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823673|ref|XP_002879719.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297325558|gb|EFH55978.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 164/217 (75%), Gaps = 20/217 (9%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMVFGKI VETPKY V +S   YEIR+Y P+V AEVTYD S FKG+KDGGF VLA YIG
Sbjct: 11  MGMVFGKIVVETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGGFQVLAKYIG 70

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK----------------- 103
             G P+N KPEKIAMTAPVITK   E EKIAMTAPV+TK  EK                 
Sbjct: 71  VFGKPENEKPEKIAMTAPVITK---EGEKIAMTAPVITKESEKIVMTSPVVTKEGGEGGK 127

Query: 104 KMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK 163
           KMVTMQF+LP  Y+KAEEAP+P DERVVIREEG RKYGVVKF G ASD VV EKV KL  
Sbjct: 128 KMVTMQFLLPSMYKKAEEAPRPTDERVVIREEGGRKYGVVKFSGTASDSVVSEKVKKLTS 187

Query: 164 SLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
            LEKDG+K+ G F+LARYNPPWTLPPFRTNEVMIPVE
Sbjct: 188 DLEKDGFKITGDFILARYNPPWTLPPFRTNEVMIPVE 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13877685|gb|AAK43920.1|AF370601_1 Unknown protein [Arabidopsis thaliana] gi|15451064|gb|AAK96803.1| Unknown protein [Arabidopsis thaliana] gi|20148421|gb|AAM10101.1| unknown protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 166/218 (76%), Gaps = 21/218 (9%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMVFGKI+VETPKY V +S   YEIR+Y P+V AEVTYD S FKG+KDGGF +LA YIG
Sbjct: 1   MGMVFGKIAVETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGGFQLLAKYIG 60

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK----------------- 103
             G P+N KPEKIAMTAPVITK   E EKIAMTAPV+TK  EK                 
Sbjct: 61  VFGKPENEKPEKIAMTAPVITK---EGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGR 117

Query: 104 -KMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK 162
            K+VTMQF+LP  Y+KAEEAP+P DERVVI+EEG RKYGV+KF G+AS+ VV EKV KL 
Sbjct: 118 KKLVTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLS 177

Query: 163 KSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
             LEKDG+K+ G F+LARYNPPWTLPPFRTNEVMIPVE
Sbjct: 178 SHLEKDGFKITGDFVLARYNPPWTLPPFRTNEVMIPVE 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687330|ref|NP_565876.2| SOUL heme-binding-like protein [Arabidopsis thaliana] gi|330254378|gb|AEC09472.1| SOUL heme-binding-like protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 166/218 (76%), Gaps = 21/218 (9%)

Query: 1   MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
           MGMVFGKI+VETPKY V +S   YEIR+Y P+V AEVTYD S FKG+KDGGF +LA YIG
Sbjct: 11  MGMVFGKIAVETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGGFQLLAKYIG 70

Query: 61  ALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK----------------- 103
             G P+N KPEKIAMTAPVITK   E EKIAMTAPV+TK  EK                 
Sbjct: 71  VFGKPENEKPEKIAMTAPVITK---EGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGR 127

Query: 104 -KMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK 162
            K+VTMQF+LP  Y+KAEEAP+P DERVVI+EEG RKYGV+KF G+AS+ VV EKV KL 
Sbjct: 128 KKLVTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLS 187

Query: 163 KSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
             LEKDG+K+ G F+LARYNPPWTLPPFRTNEVMIPVE
Sbjct: 188 SHLEKDGFKITGDFVLARYNPPWTLPPFRTNEVMIPVE 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2065578	225	SOUL-1 [Arabidopsis thaliana (	1.0	0.888	0.679	3.2e-72
TAIR|locus:2100043	309	AT3G10130 "AT3G10130" [Arabido	0.925	0.598	0.373	2.9e-23
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.89	0.936	0.305	2.8e-11
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.54	0.526	0.291	6.9e-09
UNIPROTKB|E2QYU6	200	HEBP2 "Uncharacterized protein	0.535	0.535	0.285	9.5e-07
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.82	0.748	0.263	2.2e-05
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.865	0.745	0.290	4.8e-05

TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 146/215 (67%), Positives = 167/215 (77%)

Query:     1 MGMVFGKISVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIG 60
             MGMVFGKI+VETPKY V +S   YEIR+Y P+V AEVTYD S FKG+KDGGF +LA YIG
Sbjct:    11 MGMVFGKIAVETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGGFQLLAKYIG 70

Query:    61 ALGNPQNTKPEKIAMTAPVITK-------SSP----EEEKIAMTAPVVTKSD----EKKM 105
               G P+N KPEKIAMTAPVITK       ++P    E EKI MT+PVVTK       KK+
Sbjct:    71 VFGKPENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGRKKL 130

Query:   106 VTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSL 165
             VTMQF+LP  Y+KAEEAP+P DERVVI+EEG RKYGV+KF G+AS+ VV EKV KL   L
Sbjct:   131 VTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLSSHL 190

Query:   166 EKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE 200
             EKDG+K+ G F+LARYNPPWTLPPFRTNEVMIPVE
Sbjct:   191 EKDGFKITGDFVLARYNPPWTLPPFRTNEVMIPVE 225

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 74/198 (37%), Positives = 106/198 (53%)

Query:    10 VETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPST-FKG-NKDGGFSVLANYIGALGNPQN 67
             +ET  + V+  T  YEIR+  P  VAE      T F        F+VLA Y+   G  +N
Sbjct:   114 LETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYL--FG--KN 169

Query:    68 TKPEKIAMTAPVIT-KSSPEEEKIAMTAPVVT-KSDEKKMVTMQFVLPEKYQKAEEAPKP 125
             T  EK+ MT PV+T K     EK+ MT PV+T K+ ++    M FV+P KY      P P
Sbjct:   170 TIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKY--GSNLPLP 227

Query:   126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDG-YKVVG--QFLLARYN 182
              D  V I++   +   VV F G  +DE +  +  +L+++L+ D  ++V     F +A+YN
Sbjct:   228 KDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYN 287

Query:   183 PPWTLPPFRTNEVMIPVE 200
             PP+TLP  R NEV + VE
Sbjct:   288 PPFTLPFMRRNEVSLEVE 305

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 61/200 (30%), Positives = 86/200 (43%)

Query:     1 MGMVFGKISVETPKYEVIQSTFD-YEIRKY-APSVVAEVTYDPSTFKGNKDGGFSVLANY 58
             +G       ++ PKY   +S  D YE+R Y A + V+ V       +    G F  L  Y
Sbjct:     5 IGQTLFSTGLQNPKYTAQESKGDDYEVRTYQATNWVSTVVTGMEQDQAMSTG-FRRLFKY 63

Query:    59 IGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQK 118
             I       N K  K+ MT PV     P         P    +      T+ F +PE++Q 
Sbjct:    64 IQG----SNEKKSKVEMTTPVSCLIDPG------AGPACEST-----FTVSFYIPEEHQA 108

Query:   119 AEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVV-GQFL 177
               + PKP D  V I    E    V  FGG A+ E   E++ KL +SL++DG K     + 
Sbjct:   109 --DPPKPTDPDVFIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRDGMKFKEAPYY 166

Query:   178 LARYNPPWTLPPFRTNEVMI 197
              A Y+ P+ L   R NEV +
Sbjct:   167 RAGYDSPFKLTG-RRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
 Identities = 35/120 (29%), Positives = 57/120 (47%)

Query:    86 EEEKIAMTAPVVTKSD------EKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERK 139
             +E KI MTAPV +  +       +  +T+   +P + Q   + P+P +  V I +  E  
Sbjct:    79 KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQS--DPPRPAESDVFIEDRAEMT 136

Query:   140 YGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNPPWTLPPFRTNEVMI 197
               V  F G +S +   E++  L   L ++G KV  +  +  A YN P+ L   R NEV +
Sbjct:   137 VFVRSFDGFSSAQKNQEQLLTLASILREEG-KVFDEKVYYTAGYNSPFKLLD-RNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2QYU6 HEBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 93 (37.8 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 34/119 (28%), Positives = 56/119 (47%)

Query:    87 EEKIAMTAPVVTKSD------EKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKY 140
             E KI MTAPV +  +       + ++T+   +P + Q   + P+P +  V I +  E   
Sbjct:    75 EMKIKMTAPVTSLVEPGSGPFSESIITISLYIPSEQQP--DPPRPSESGVFIEDRAEMTV 132

Query:   141 GVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNPPWTLPPFRTNEVMI 197
              V  F G +S +   E++  L   L ++G KV  +  +  A YN P+ L     NEV +
Sbjct:   133 FVRAFDGFSSAQKNQEQLLTLASILREEG-KVFNEKVYYTAGYNSPFNLLD-GNNEVWL 189

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 52/197 (26%), Positives = 85/197 (43%)

Query:    11 ETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPS-TFKGNKDGGFSVLANYIGALGNPQNTK 69
             E P Y+++++ + +EIR Y  ++    +  PS +       GF  L  YI    N  N K
Sbjct:    44 ECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQATKTGFRRLNRYIEG-DNKSNVK 102

Query:    70 PEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDER 129
                + MTAPVI +++P                 + + T+   LP+K Q   + P   D+ 
Sbjct:   103 ---MNMTAPVIAQATPG----------------RSVYTVSLYLPKKNQ---QNPPQADD- 139

Query:   130 VVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGY-----KVVGQ---FLLARY 181
             + +R        V + GG  S+ V  ++   L +SL    +     K  G+   + LA Y
Sbjct:   140 LHVRSTKPTYVAVRQIGGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAVY 199

Query:   182 NPPWTLPPFRTNEVMIP 198
             NPP        NE+M+P
Sbjct:   200 NPPSHTTARVINEIMVP 216

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 59/203 (29%), Positives = 88/203 (43%)

Query:    10 VETPKYEVIQSTFDYEIRKYAPSV-VA-EVTYDPSTFKGNKDGGFSVLANYIGALGNPQN 67
             +E P YE++ S   YEIR+Y  +V V+ E   D S     +   F + A YI      +N
Sbjct:    45 IECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDATRTAFFQLFA-YIQG----KN 99

Query:    68 TKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAP---- 123
                +KI MTAPVI++ SP +       P    S      T+ F +P+K Q  + AP    
Sbjct:   100 EYHQKIEMTAPVISQVSPSD------GPFCESS-----FTVSFYVPKKNQP-DPAPSENL 147

Query:   124 ---KPVDERVVIRE-EGERKYGVVKFGGVASDEVV-GEK-VDKLKKSLEKDGYKVVGQFL 177
                K     V +R+  G      +     A D  + G    + + KS E  G      + 
Sbjct:   148 HIQKWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYT 207

Query:   178 LARYNPPWTLPPFRTNEVMIPVE 200
             +A+YN P+     R NE+ +P E
Sbjct:   208 VAQYNSPFEFSG-RVNEIWLPFE 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       200   0.00087  111 3  11 23  0.42    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  521 (55 KB)
  Total size of DFA:  136 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.97u 0.16s 22.13t   Elapsed:  00:00:01
  Total cpu time:  21.97u 0.16s 22.13t   Elapsed:  00:00:01
  Start:  Fri May 10 01:30:44 2013   End:  Fri May 10 01:30:45 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	3e-68

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  205 bits (525), Expect = 3e-68
 Identities = 82/189 (43%), Positives = 101/189 (53%), Gaps = 15/189 (7%)

Query: 9   SVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNT 68
           +VETP Y V++   DYEIR+Y P V AE   D  +       GF  LA YI      +N 
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAGSRDEASGEGFRRLAGYIF----GKNR 56

Query: 69  KPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDE 128
             EKIAMTAPV+       + I MTA      +     T+ FV+P  YQ AE  P P+D 
Sbjct: 57  SGEKIAMTAPVLQ------QAIPMTAD----EEGSGAWTVSFVMPSGYQ-AETLPAPLDP 105

Query: 129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLP 188
            V IRE   R   V++F G AS+E V EK  +L+  LE DG K  G+  LA YNPPWT P
Sbjct: 106 DVRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEADGLKPRGEPFLAGYNPPWTPP 165

Query: 189 PFRTNEVMI 197
             R NEV +
Sbjct: 166 FLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.77
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.38
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	96.64
PRK10016	156	DNA gyrase inhibitor; Provisional	94.64
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	94.57
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.07
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	92.27
COG3708	157	Uncharacterized protein conserved in bacteria [Fun	89.97
COG4978	153	Transcriptional regulator, effector-binding domain	89.06

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=1.4e-57  Score=367.76  Aligned_cols=176  Identities=46%  Similarity=0.692  Sum_probs=140.3

Q ss_pred             ccCCCCeEEEeeCCCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchh
Q 028987            9 SVETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEE   88 (200)
Q Consensus         9 ~~e~P~y~vl~~~~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~   88 (200)
                      .+|||+|+||++.++||||+|++++||||++.+++++.|...||++|++||+    |+|+++++|+||+||+++..    
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~----G~N~~~~ki~mT~PV~~~~~----   72 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIF----GKNSAGEKIAMTAPVLTQVI----   72 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHC----T-CTT------BS-EEEEEE----
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHh----cCCcccceeeccCCEEEEEE----
Confidence            3699999999999999999999999999999999999999999999999998    88999999999999999972    


Q ss_pred             hhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhC
Q 028987           89 KIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKD  168 (200)
Q Consensus        89 ~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~  168 (200)
                        .|+..     .|++.++|||+||.+|| +++||+|+|++|+|+++|+.++||++|+|++++.++.+++++|+++|+++
T Consensus        73 --~~~~~-----~~~~~~t~~f~lP~~~~-~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~  144 (176)
T PF04832_consen   73 --PMTAE-----SCEKEYTMSFFLPSEYQ-AENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKD  144 (176)
T ss_dssp             --ETTTT-----TCECEEEEEEE--HHHC--TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCT
T ss_pred             --cCCCc-----ccCCcEEEEEEcCcccc-cccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHc
Confidence              23331     34678999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeCcEEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987          169 GYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       169 g~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      |+...+.+++|+||+||+++++|||||||+||
T Consensus       145 g~~~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  145 GLKDKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             THHCCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CCCcCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            99966789999999998888999999999986

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.77  E-value=0.0029  Score=49.46  Aligned_cols=150  Identities=17%  Similarity=0.228  Sum_probs=96.9

Q ss_pred             CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCC
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDE  102 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~  102 (200)
                      +++|+..++...|+....+... +...++|.+|+.++.     .|.    +..+ +.+.... +       .|-.+..+ 
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~-~~~~~~~~~L~~~~~-----~~~----l~~~-~~~~i~~-D-------~p~~~~~~-   61 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWE-QTVKQGFEQLMMWVD-----SHN----IVPK-EWVAVYY-D-------NPDEVPAE-   61 (156)
T ss_pred             ceEEEEccCceEEEEEeecCch-hHHHHHHHHHHHHHH-----HcC----CCCC-cEEEEEC-C-------CCCCCChH-
Confidence            4789999999999988877543 346789999999995     342    2223 2333322 1       12110100 


Q ss_pred             CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHH-HHHHHHhCCCeeeCcEEEEEe
Q 028987          103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDK-LKKSLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~a~Y  181 (200)
                      +=.+-++.-+|....    .| +.+..+.+..+|+.++||..+.|.  -+.+.+.-.. +.+||.++|....+.+.+--|
T Consensus        62 ~~R~d~~i~v~~~~~----~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~~~~p~~E~Y  134 (156)
T PRK10016         62 KLRCDTVVTVPDDFV----LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQMAPKPCFEVY  134 (156)
T ss_pred             HceeeEEEEeCCCcc----cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCccCCCCCEEEe
Confidence            113788999997642    23 223479999999999999999995  4456666656 779999999988744333334


Q ss_pred             C-CCCCCCCCCeeeEEEEeC
Q 028987          182 N-PPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       182 d-~P~~~p~~R~NEV~i~v~  200 (200)
                      . .|... -.-.=||||+|+
T Consensus       135 ~~~~~~~-~~~~tei~iPI~  153 (156)
T PRK10016        135 LNDGAED-GYWDIEMYVPVQ  153 (156)
T ss_pred             CCCCCCC-CcEEEEEEEEeE
Confidence            3 34432 222459999984

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.38  E-value=0.0046  Score=46.39  Aligned_cols=150  Identities=20%  Similarity=0.212  Sum_probs=97.8

Q ss_pred             CeEEEEeCCceEEEEEeCCCCccCc-hhhHHHHHHHhhcccCCCCCCCCCccc-CCCCeEEecCCchhhhhccCCceecc
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTFKGN-KDGGFSVLANYIGALGNPQNTKPEKIA-MTAPVITKSSPEEEKIAMTAPVVTKS  100 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~~~a-~~~gF~~L~~YI~~~g~G~N~~~~~i~-MT~PV~~~~~~~~~~~~mt~pv~~~~  100 (200)
                      +++|+.-++...+.....+..-... ....+.+|..++.     .+    .+. ...+.+.-....        |.. ..
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~-----~~----~~~~~~~~~~~i~~~~--------~~~-~~   63 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLK-----EI----GLSTDPGPIIGIYYDN--------PNI-TD   63 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH-----HH----HHCCSSSSEEEEEEEC--------CTS-ST
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHH-----Hh----hcccCCCcceeEEecc--------ccc-cC
Confidence            4788888888888877664332212 5678899999985     22    111 445555443211        100 00


Q ss_pred             CCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH-HHHhCCCee-eCcEEE
Q 028987          101 DEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK-SLEKDGYKV-VGQFLL  178 (200)
Q Consensus       101 ~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~-~~~~~~  178 (200)
                      +..-.+.+++-++...        +..+++....+|+..+++..|.|..  +.+.+....|.. ||.++|+.. .+..+-
T Consensus        64 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~~~~~~~E  133 (155)
T PF06445_consen   64 DEEFRYDIGVEVDEDV--------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYERRDGPDFE  133 (155)
T ss_dssp             GCEEEEEEEEEECTTC--------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEEESSEEEE
T ss_pred             CcceEEEEEEEEcccc--------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCccCCCCcEE
Confidence            1123455555555432        3467799999999999999999977  778889999999 999999944 444444


Q ss_pred             EEeCCCCCCCCCCeeeEEEEeC
Q 028987          179 ARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       179 a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      ...+.|...+-.-.=||||+|+
T Consensus       134 ~y~~~~~~~~~~~~~ei~iPik  155 (155)
T PF06445_consen  134 IYLNDPDTDEEEYVTEIYIPIK  155 (155)
T ss_dssp             EEESSTTTTSCGEEEEEEEEEE
T ss_pred             EECCCCCCCCCceEEEEEEEEC
Confidence            4455555333566779999985

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=96.64  E-value=0.061  Score=42.68  Aligned_cols=146  Identities=21%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCC
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDE  102 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~  102 (200)
                      +++|+..++...|.-...|  ......++|.+|+.+-.     .|.--   +-++.-+.-...+.+   .|.|      .
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~-----~~~l~---p~~S~~~gI~~ddP~---~Tp~------e   62 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRR-----ENGLL---PEQSETLGIYQDDPD---TTPA------E   62 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHH-----HcCCC---CCCceEEEEecCCCC---CCCH------H
Confidence            7899999999999998887  33567789999999996     33221   113333333322211   1112      1


Q ss_pred             CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHH-HHHHHHHHHhCCCeeeCcEEEEEe
Q 028987          103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEK-VDKLKKSLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~-~~~L~~~L~~~g~~~~~~~~~a~Y  181 (200)
                      +=.+-.|..+|...+       +++..|.+-++|+..+||.+|.|..  +++.+- ..-+.+||.+.|....+.+.+.+|
T Consensus        63 ~~R~D~cv~v~~~~~-------~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~~~d~P~~e~y  133 (154)
T COG3449          63 KCRYDACVVVPEPIP-------ENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYEPRDRPILERY  133 (154)
T ss_pred             HceeeEEEEcCCccC-------CCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcccCCCchHHHH
Confidence            225788888884433       3477899999999999999999954  333333 455677888889999888888888


Q ss_pred             CCCCCCCCCCeeeEEEE
Q 028987          182 NPPWTLPPFRTNEVMIP  198 (200)
Q Consensus       182 d~P~~~p~~R~NEV~i~  198 (200)
                      =+....  .-..|+.++
T Consensus       134 ~n~~~~--~~~~e~~vd  148 (154)
T COG3449         134 LNFPAE--DPEHEIEVD  148 (154)
T ss_pred             hccCCC--CcceeEEEE
Confidence            666665  344444433

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=94.64  E-value=0.24  Score=38.55  Aligned_cols=55  Identities=15%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCC
Q 028987          129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPW  185 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~  185 (200)
                      +|.|.++|+..++.++..|...+ .+.+...+|.+++.++|+... .+....||.|-
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~~-~~~~i~~D~p~   56 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVPK-EWVAVYYDNPD   56 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCCC-cEEEEECCCCC
Confidence            58999999999999999996643 467888999999999998754 47888999993

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=94.57  E-value=1.4  Score=32.75  Aligned_cols=153  Identities=16%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             eEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCCC
Q 028987           24 YEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK  103 (200)
Q Consensus        24 yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~~  103 (200)
                      +++..-++...+.....+........+.|.+|+.++.    ..+.......  .+++.-...        .|.... +..
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~--------~~~~~~-~~~   66 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAK----ELGLLPIGPS--GPPYGVYYD--------DPDDTP-EGE   66 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHH----HcCCCCCCCC--ccEEEEECC--------CCCCCC-hhH
Confidence            3444455555665554433222235678889999885    1121111111  232222211        110000 012


Q ss_pred             eeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeee---CcEEEEE
Q 028987          104 KMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVV---GQFLLAR  180 (200)
Q Consensus       104 ~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~---~~~~~a~  180 (200)
                      -.+.+++.++....    .    ...+.+..+|+..+++..|.|- ....+.+-..+|..++..++....   +..+--.
T Consensus        67 ~~~~~g~~v~~~~~----~----~~~~~~~~~p~~~y~~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y  137 (158)
T smart00871       67 FRYDAGVEVSDEVE----N----PEGVETKEIPAGKYAVFTHKGG-SYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIY  137 (158)
T ss_pred             eEEEEEEEeCCCCC----C----CCCceEEEECCCcEEEEEEcCC-CHHHHHHHHHHHHHhhcccCCCccCcCCceEEEE
Confidence            24555555554321    2    2358899999999999999993 466788899999999888775432   3333333


Q ss_pred             eCCCCC-CCCCCeeeEEEEeC
Q 028987          181 YNPPWT-LPPFRTNEVMIPVE  200 (200)
Q Consensus       181 Yd~P~~-~p~~R~NEV~i~v~  200 (200)
                      ++.|.. .+-...=|++|+|+
T Consensus       138 ~~~~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      138 LNDPADTDPEELVTEIYIPIK  158 (158)
T ss_pred             eCCCCCCChhHeEEEEEEEcC
Confidence            455432 12345678999885

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.07  E-value=0.45  Score=37.79  Aligned_cols=57  Identities=16%  Similarity=0.064  Sum_probs=49.2

Q ss_pred             CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeC-cEEEEEeCCCCCC
Q 028987          129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVG-QFLLARYNPPWTL  187 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~-~~~~a~Yd~P~~~  187 (200)
                      +|.|.+.|+..||..+-.|  ....+.+-.++|.+|.+++|+.... ....-.||.|-+-
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~T   59 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTT   59 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCC
Confidence            6999999999999999999  7888999999999999999987754 4567778888743

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=92.27  E-value=0.44  Score=35.37  Aligned_cols=68  Identities=18%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             CeEEEEeCCeEEEEEEecCccChHH-HHHHHHHHHHHHHhCCCe-eeCcEEEEEeCCCCCCCCCCeeeEEE
Q 028987          129 RVVIREEGERKYGVVKFGGVASDEV-VGEKVDKLKKSLEKDGYK-VVGQFLLARYNPPWTLPPFRTNEVMI  197 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~-~~~~~~~a~Yd~P~~~p~~R~NEV~i  197 (200)
                      +|.|.++|+.+++..+..|...+.. +.+...+|.+++...++. ....+....||.|... ......+++
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~   71 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLSTDPGPIIGIYYDNPNIT-DDEEFRYDI   71 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCSSSSEEEEEEECCTSS-TGCEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcccCCCcceeEEecccccc-CCcceEEEE
Confidence            5899999999999999999887766 899999999999998876 4456777788887543 244554443

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.97  E-value=5.6  Score=31.59  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=59.0

Q ss_pred             CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH-HHHhCCCeeeCcEEEEEe
Q 028987          103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK-SLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~a~Y  181 (200)
                      .+.|+...-..-...  .+.|.+    ...-++|+.+++|-...|...+  +++--..+.. |+...+....+...+=.|
T Consensus        65 ~g~~~y~i~~ev~~~--~~~pe~----~~~i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~~~~~~~fE~Y  136 (157)
T COG3708          65 EGEFDYYIGVEVEDF--EDLPEG----MEVIEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYRHAEGPEFEVY  136 (157)
T ss_pred             CCCEEEEEEEEeecc--ccCCCC----ceEEEeccceEEEEEecCCHHH--HHHHHHHHHHhhcccccccccCCCceEEe
Confidence            345555544443312  455555    7788899999999999997766  5665555554 467888777554466677


Q ss_pred             CC--CCCCCCCCeeeEEEEeC
Q 028987          182 NP--PWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       182 d~--P~~~p~~R~NEV~i~v~  200 (200)
                      |.  |..  -+-.=||||+|+
T Consensus       137 d~~~~~~--~~~~veIyIpV~  155 (157)
T COG3708         137 DERDPDS--GNGKVEIYIPVK  155 (157)
T ss_pred             cCCCCCC--CCceEEEEEEEe
Confidence            65  344  378889999984

>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]

Probab=89.06  E-value=4  Score=32.29  Aligned_cols=146  Identities=19%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             eEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCCC
Q 028987           24 YEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEK  103 (200)
Q Consensus        24 yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~~  103 (200)
                      ..+...++...+.....+. ........+..|.++++     .|+   .+.+ .|.....+..        ++..  . +
T Consensus         5 ~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~-----~~~---~~~~-~~~~~~~~~~--------~~~~--~-~   63 (153)
T COG4978           5 VVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLK-----SNG---IIPI-GPYGATIFHE--------PLKE--E-D   63 (153)
T ss_pred             cEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHh-----hcC---cccc-CCceEEEEee--------eecc--c-c
Confidence            4566677777777776654 34577789999999995     342   1222 2333332211        1100  0 1


Q ss_pred             eeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCC
Q 028987          104 KMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNP  183 (200)
Q Consensus       104 ~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~  183 (200)
                      -..-+++++=..      .+  .|.++.+...|..+++...|.|...+  +.+.-++|..+++++|+...+..+-.--.+
T Consensus        64 ~~~~~s~~i~~~------~~--~~~~~~~~~~P~g~~a~~~~~G~~~~--~~~~y~rli~~iee~g~~i~g~~~E~y~~d  133 (153)
T COG4978          64 VDIEVSIPISGE------VE--GDIDIKIKTLPKGKYACIIHKGSYEE--VEQAYKRLIEYIEENGLEIIGPSREVYLID  133 (153)
T ss_pred             cccceeEEEEEe------cC--CCCcceeEEccCceEEEEEEEcCccc--HHHHHHHHHHHHHHhCCcccCceEEEEecC
Confidence            123344443322      12  68889999999999999999997644  667788999999999999988655555555


Q ss_pred             CCCC--CCCCeeeEEEEeC
Q 028987          184 PWTL--PPFRTNEVMIPVE  200 (200)
Q Consensus       184 P~~~--p~~R~NEV~i~v~  200 (200)
                      |.+.  +-.=.-||.|+|+
T Consensus       134 ~~~~~~~~e~~tei~i~v~  152 (153)
T COG4978         134 PATEVNPEEYLTEIQIPVK  152 (153)
T ss_pred             CccccChhHeEEEEEEEee
Confidence            5522  1344557777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		9e-07
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		1e-06
4ayz_B	208	X-Ray Structure Of Human Soul Length = 208		3e-04

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10  VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
           VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI      
Sbjct: 42  VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG---- 97
Query: 66  QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
           +N K  KI MTAPV +   P     +           +  +T+   +P + Q   + P+P
Sbjct: 98  KNEKEMKIKMTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 144
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
           ++  V I +  E    V  F G +S +   E++  L   L +DG KV  +  +  A YN 
Sbjct: 145 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 203
Query: 184 PWTLPPFRTNEVMI 197
           P  L   R NEV +
Sbjct: 204 PVKLLN-RNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10  VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
           VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI      
Sbjct: 23  VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG---- 78
Query: 66  QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
           +N K  KI MTAPV +   P     +           +  +T+   +P + Q   + P+P
Sbjct: 79  KNEKEMKIKMTAPVTSYVEPGSGPFS-----------ESTITISLYIPSEQQF--DPPRP 125
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
           ++  V I +  E    V  F G +S +   E++  L   L +DG KV  +  +  A YN 
Sbjct: 126 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 184
Query: 184 PWTLPPFRTNEVMI 197
           P  L   R NEV +
Sbjct: 185 PVKL-LNRNNEVWL 197

>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)
Query: 10  VETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNP 65
           VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI      
Sbjct: 23  VETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQG---- 78
Query: 66  QNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKP 125
           +N K  KI  TAPV +   P       + P      E   +T+   +P + Q   + P+P
Sbjct: 79  KNEKEXKIKXTAPVTSYVEP------GSGPF-----ESSTITISLYIPSEQQF--DPPRP 125
Query: 126 VDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ--FLLARYNP 183
           ++  V I +  E    V  F G +S +   E++  L   L +DG KV  +  +  A YN 
Sbjct: 126 LESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLLTLASILREDG-KVFDEKVYYTAGYNS 184
Query: 184 PWTLPPFRTNEVMI 197
           P  L   R NEV +
Sbjct: 185 PVKL-LNRNNEVWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	6e-40
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	2e-37
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	1e-36

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  134 bits (337), Expect = 6e-40
 Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 9   SVETPKYEVIQS----TFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGN 64
           SVET  ++V+ +       YE R       A V                 +  Y+G    
Sbjct: 17  SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGG--- 73

Query: 65  PQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPK 124
             N K   + MT PV     P E+              +K + + F +P ++Q     P 
Sbjct: 74  -TNDKGVGMGMTVPVSFAVFPNEDG-----------SLQKKLKVWFRIPNQFQ--GSPPA 119

Query: 125 PVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ-FLLARYNP 183
           P DE V I E         +FGG A +        +L+ +LE       G  +  A Y+P
Sbjct: 120 PSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDP 179

Query: 184 PWTLPPFRTNEVMI 197
           P   P  R NEV +
Sbjct: 180 PMK-PYGRRNEVWL 192

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  128 bits (322), Expect = 2e-37
 Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 23/197 (11%)

Query: 9   SVETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGN 64
           +VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI     
Sbjct: 41  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG--- 97

Query: 65  PQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPK 124
            +N K  KI MTAPV +   P            +    +  +T+   +P + Q   + P+
Sbjct: 98  -KNEKEMKIKMTAPVTSYVEPG-----------SGPFSESTITISLYIPSEQQF--DPPR 143

Query: 125 PVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVG-QFLLARYNP 183
           P++  V I +  E    V  F G +S +   E++  L   L +DG       +  A YN 
Sbjct: 144 PLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNS 203

Query: 184 PWTLPPFRTNEVMIPVE 200
           P      R NEV +  +
Sbjct: 204 PVK-LLNRNNEVWLIQK 219

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  126 bits (316), Expect = 1e-36
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 23/197 (11%)

Query: 9   SVETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGN 64
           +VETP ++  +        YEIR Y P+     + +   +      GF+ L +YI     
Sbjct: 22  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQG--- 78

Query: 65  PQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPK 124
            +N K  KI MTAPV +   P            +    +  +T+   +P + Q   + P+
Sbjct: 79  -KNEKEMKIKMTAPVTSYVEPG-----------SGPFSESTITISLYIPSEQQF--DPPR 124

Query: 125 PVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ-FLLARYNP 183
           P++  V I +  E    V  F G +S +   E++  L   L +DG     + +  A YN 
Sbjct: 125 PLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNS 184

Query: 184 PWTLPPFRTNEVMIPVE 200
           P      R NEV +  +
Sbjct: 185 PVK-LLNRNNEVWLIQK 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.57
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.54
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	97.59
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	97.53
3lur_A	158	Putative bacterial transcription regulation prote;	95.78
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	94.67
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	94.32
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	91.74
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	85.72
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	81.7

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=2.2e-56  Score=369.38  Aligned_cols=175  Identities=30%  Similarity=0.459  Sum_probs=161.9

Q ss_pred             CccCCCCeEEEee----CCCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEec
Q 028987            8 ISVETPKYEVIQS----TFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKS   83 (200)
Q Consensus         8 ~~~e~P~y~vl~~----~~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~   83 (200)
                      .++|||+|+||++    .++||||+|++++||||++.+++++.|...||++|++||+    |+|.++.+|+||+||++++
T Consensus        21 ~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~t~~   96 (212)
T 3r8j_A           21 QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQ----GKNEKEMKIKMTAPVTSYV   96 (212)
T ss_dssp             -CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHT----TCBTTCCCCCCBSCEEEEE
T ss_pred             CCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhh----cCCCCCCccccccCEEEEE
Confidence            3789999999999    8999999999999999999988899999999999999998    7899999999999999998


Q ss_pred             CCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH
Q 028987           84 SPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK  163 (200)
Q Consensus        84 ~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~  163 (200)
                      .++.      .|     .+.+.++|+|+||.+||  ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|++
T Consensus        97 ~p~~------~~-----~~~~~~tvsF~lP~~~q--~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~  163 (212)
T 3r8j_A           97 EPGS------GP-----FSESTITISLYIPSEQQ--FDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS  163 (212)
T ss_dssp             ECTT------ST-----TSCEEEEEEEECCHHHH--SSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             ecCC------Cc-----ccCceEEEEEEcChHHc--cCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHH
Confidence            5432      22     23678999999999999  89999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987          164 SLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       164 ~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      +|+++|+.+.+. |++|+||+||++ |+|||||||..+
T Consensus       164 ~L~~~g~~~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~  200 (212)
T 3r8j_A          164 ILREDGKVFDEKVYYTAGYNSPVKL-LNRNNEVWLIQK  200 (212)
T ss_dssp             HHHHTTCCBCSSCEEEEESSSSSCC-SSSCEEEEEEBC
T ss_pred             HHHhCCCccCCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence            999999999775 699999999997 999999999864

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=2.5e-56  Score=365.09  Aligned_cols=174  Identities=27%  Similarity=0.351  Sum_probs=160.3

Q ss_pred             CccCCCCeEEEeeCCC----eEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEec
Q 028987            8 ISVETPKYEVIQSTFD----YEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKS   83 (200)
Q Consensus         8 ~~~e~P~y~vl~~~~~----yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~   83 (200)
                      .+.|||+|+||++.++    ||||+|++++||||++.++++++|...||++|++||+    |+|..+++|+||+||++++
T Consensus        16 ~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~~~~   91 (195)
T 2gov_A           16 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVG----GTNDKGVGMGMTVPVSFAV   91 (195)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHH----TCBTTCCCCCCCCCEEEEE
T ss_pred             CCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCChhHHHHHHHHHHHHHhc----cCCCCCCCcccccCEEEEE
Confidence            3689999999999877    9999999999999999998899999999999999998    7899999999999999987


Q ss_pred             CCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHH
Q 028987           84 SPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKK  163 (200)
Q Consensus        84 ~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~  163 (200)
                      .++.      .|     .|.+.|+|+|+||++||  ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|++
T Consensus        92 ~p~~------~~-----~~~~~~tvsF~lP~~~~--~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~  158 (195)
T 2gov_A           92 FPNE------DG-----SLQKKLKVWFRIPNQFQ--GSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRT  158 (195)
T ss_dssp             EECT------TS-----CEEEEEEEEECCCHHHH--HSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             cCCC------CC-----CcCceEEEEEEcchhcc--cCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHH
Confidence            4321      22     23568999999999999  78999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEe
Q 028987          164 SLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPV  199 (200)
Q Consensus       164 ~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v  199 (200)
                      +|+++|+.+.+. |++|+|||||++ ++|||||||..
T Consensus       159 ~L~~~g~~~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~  194 (195)
T 2gov_A          159 TLEGTPATYQGDVYYCAGYDPPMKP-YGRRNEVWLVK  194 (195)
T ss_dssp             HTTTSSCCEEEEEEEEEESSCCSSS-SCCEEEEEEEE
T ss_pred             HHHHCCCcccCCcEEEEEeCCCCCc-CCceeEEEEEe
Confidence            999999988765 799999999998 99999999975

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=3.9e-56  Score=370.93  Aligned_cols=176  Identities=30%  Similarity=0.455  Sum_probs=156.7

Q ss_pred             cCccCCCCeEEEee----CCCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEe
Q 028987            7 KISVETPKYEVIQS----TFDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITK   82 (200)
Q Consensus         7 ~~~~e~P~y~vl~~----~~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~   82 (200)
                      ..++|||+|+||++    .++||||+|++++||||++.++++++|...||++|++||+    |+|.++.+|+||+||+++
T Consensus        39 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~----G~N~~~~kI~MTaPV~t~  114 (227)
T 4b0y_A           39 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQ----GKNEKEMKIKMTAPVTSY  114 (227)
T ss_dssp             --CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHH----TCBTTCCCCCCBSCEEEE
T ss_pred             cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhh----cCCCCCCccccccCEEEE
Confidence            35789999999999    8999999999999999999988899999999999999998    789999999999999999


Q ss_pred             cCCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH
Q 028987           83 SSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK  162 (200)
Q Consensus        83 ~~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~  162 (200)
                      +.++.      .|     .+.+.++|+|+||.+||  ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|+
T Consensus       115 ~~p~~------~~-----~~~~~~tvsF~lP~~~q--~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~  181 (227)
T 4b0y_A          115 VEPGS------GP-----FSESTITISLYIPSEQQ--FDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLA  181 (227)
T ss_dssp             EECCC-------------CCCEEEEEEEECCGGGS--SSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             EecCC------Cc-----ccCceEEEEEEcChhhc--cCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHH
Confidence            75432      12     23678999999999999  8999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987          163 KSLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       163 ~~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      ++|+++|+.+.+. |++|+||+||++ |+|||||||..+
T Consensus       182 ~~L~~~g~~~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~  219 (227)
T 4b0y_A          182 SILREDGKVFDEKVYYTAGYNSPVKL-LNRNNEVWLIQK  219 (227)
T ss_dssp             HHHHHHTCCBCSSCEEEEECC---CC-CSSCEEEEEEBC
T ss_pred             HHHHhCCCccCCCcEEEEEeCCCCCc-CCceeEEEEEEC
Confidence            9999999999775 699999999997 999999999864

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.57  E-value=2.8e-06  Score=64.82  Aligned_cols=146  Identities=14%  Similarity=0.157  Sum_probs=101.0

Q ss_pred             CeEEEEeCCceEEEEEeCCCCc--cCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceecc
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTF--KGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKS  100 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~--~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~  100 (200)
                      +++|+..++...|.....+..-  ......+|.+|+.++.    .+|     +..+.|.+.....        .+     
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~----~~~-----l~~~g~~~~iy~d--------~~-----   65 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLA----GQG-----KSPSGPPFARYFG--------MS-----   65 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHH----HTT-----CCCSSCCEEEEES--------CT-----
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHH----HcC-----CCCCCCeEEEEec--------CC-----
Confidence            6789999999999888765421  1122367889999995    222     3344554443321        01     


Q ss_pred             CCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEE
Q 028987          101 DEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLAR  180 (200)
Q Consensus       101 ~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~  180 (200)
                      +++-.+.+++-++...        +.+..|.+..+|+.++++.++.|...+  +.+.-.+|.+||.++|+...+..+-..
T Consensus        66 ~~~~~~~~~~~v~~~~--------~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~~~~~~E~Y  135 (158)
T 3e0h_A           66 AGTFEVEFGFPVEGGV--------EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDLSGEAYEIY  135 (158)
T ss_dssp             TSCEEEEEEEECCSCC--------CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             CcceEEEEEEEeCCCC--------CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCcCCCEEEEE
Confidence            1133466666655432        234679999999999999999997653  778888999999999998886555556


Q ss_pred             eCCCCC-CCCCCeeeEEEEeC
Q 028987          181 YNPPWT-LPPFRTNEVMIPVE  200 (200)
Q Consensus       181 Yd~P~~-~p~~R~NEV~i~v~  200 (200)
                      +|.|.. .+-..+.||||+|+
T Consensus       136 ~~~p~~~~~~~~~tei~ipv~  156 (158)
T 3e0h_A          136 LDNPAETAPDQLRTRVSLMLH  156 (158)
T ss_dssp             CSCTTSSCGGGCEEEEEEEEC
T ss_pred             eCCCCCCCHHHhEEEEEEEEc
Confidence            788874 44677999999985

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.54  E-value=3.6e-07  Score=67.83  Aligned_cols=150  Identities=18%  Similarity=0.223  Sum_probs=99.4

Q ss_pred             CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCC
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDE  102 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~  102 (200)
                      +++|+..++...+.....+. +......+|.+|+.++.    .+|     +.. .+.+.-..        ..|..+. ..
T Consensus         2 ~~~i~~~~~~~v~~~~~~g~-~~~~i~~~~~~l~~~~~----~~~-----~~~-~~~~gi~~--------~~~~~~~-~~   61 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVD----SKN-----IVP-KEWVAVYY--------DNPDETP-AE   61 (157)
T ss_dssp             CCEEEEECCEEEEEEEEESC-HHHHHHHHHHHHHHHHH----HTT-----CCC-SEEEEEEC--------SCTTTSC-GG
T ss_pred             CCEEEEeCCeEEEEEEEECC-chhhHHHHHHHHHHHHH----HcC-----CCC-CcEEEEEC--------CCCCCCC-HH
Confidence            47899999999998877653 22245678999999995    222     111 13332221        1121100 11


Q ss_pred             CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEe
Q 028987          103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Y  181 (200)
                      .-.+.+++.+|....    +| |.++.+.+..+|+.+++|..|.|...  .+.+.-.+|. +||.++|+...+.+.+-.|
T Consensus        62 ~~~~~~~~~v~~~~~----~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~~~~~~~E~Y  134 (157)
T 1jyh_A           62 KLRCDTVVTVPGYFT----LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEMLPKPCFEVY  134 (157)
T ss_dssp             GCEEEEEEEECTTCC----CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEECSSCEEEEE
T ss_pred             HheEEEEEEecCccc----cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCccCCCceEEEe
Confidence            335788888887543    22 44677999999999999999999763  3566777775 9999999988875556667


Q ss_pred             C-CCCCCCCCCeeeEEEEeC
Q 028987          182 N-PPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       182 d-~P~~~p~~R~NEV~i~v~  200 (200)
                      . .|.. +-..+.||||+|+
T Consensus       135 ~~~~~~-~~~~~tei~ipi~  153 (157)
T 1jyh_A          135 LNNGAE-DGYWDIEMYVAVQ  153 (157)
T ss_dssp             CSCHHH-HSSEEEEEEEEEE
T ss_pred             cCCCCC-cccEEEEEEEEee
Confidence            3 2323 3456779999984

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=97.59  E-value=0.0047  Score=51.12  Aligned_cols=153  Identities=12%  Similarity=0.029  Sum_probs=97.1

Q ss_pred             CCCeEEEEeCCceEEEEEeCCCCccCch-hhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceec
Q 028987           21 TFDYEIRKYAPSVVAEVTYDPSTFKGNK-DGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTK   99 (200)
Q Consensus        21 ~~~yEvR~Y~~~~wa~t~~~~~~~~~a~-~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~   99 (200)
                      ..+++|+..++...+......... ... ...|.+|..++.     .+    .+..+.|+.......        +. ..
T Consensus       121 ~~~v~I~~~p~~~v~~~~~~~~~~-~~i~~~~~~~l~~~~~-----~~----~l~~~~~~g~~~~~~--------~~-~~  181 (278)
T 1r8e_A          121 LGEVFVLDEEEIRIIQTEAEGIGP-ENVLNASYSKLKKFIE-----SA----DGFTNNSYGATFSFQ--------PY-TS  181 (278)
T ss_dssp             TTCCEEEEECCEEEEEEECTTCCT-TTCCGGGGHHHHHHHH-----HH----HSSCCCCEEEEECCC--------CC-SC
T ss_pred             CCceEEEEcCCeEEEEeecCCCCh-HhHHHHHHHHHHHHHH-----Hc----CCcccCceEEEEEhH--------Hh-hc
Confidence            357899999999988876622222 334 578999999995     22    134455765443211        00 00


Q ss_pred             cCCCeeE-EEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEE
Q 028987          100 SDEKKMV-TMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLL  178 (200)
Q Consensus       100 ~~~~~~~-tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~  178 (200)
                      ++ ...+ .+++.++...     .|.|.+..|.+..+|+..+++..+.|..  ..+.+....|.+||.++|+...+..+-
T Consensus       182 ~~-~~~~~~~~v~v~~~~-----~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~~g~~~E  253 (278)
T 1r8e_A          182 ID-EMTYRHIFTPVLTNK-----QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTVVSDVYE  253 (278)
T ss_dssp             GG-GCCCSEEEEECCCCS-----CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CC-CcceeEEEEEecCcc-----ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCccCCCeEE
Confidence            00 1111 2444443321     1223456799999999999999999965  446777788889999999988776555


Q ss_pred             EEeCCCCCC--CCCCeeeEEEEeC
Q 028987          179 ARYNPPWTL--PPFRTNEVMIPVE  200 (200)
Q Consensus       179 a~Yd~P~~~--p~~R~NEV~i~v~  200 (200)
                      -.++.|+..  +-.-.-||||+|+
T Consensus       254 ~y~~~~~~~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          254 LIIPIHYSPKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             EEEESCCCSSSCCCEEEEEEEEEC
T ss_pred             EEeecccccCChhheEEEEEEEec
Confidence            566666653  2345679999985

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=97.53  E-value=0.0034  Score=50.31  Aligned_cols=165  Identities=14%  Similarity=0.025  Sum_probs=100.7

Q ss_pred             CCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhh------cccCCCCCCCCCc-ccCCC-CeEEecCCchhhhhcc
Q 028987           22 FDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYI------GALGNPQNTKPEK-IAMTA-PVITKSSPEEEKIAMT   93 (200)
Q Consensus        22 ~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI------~~~g~G~N~~~~~-i~MT~-PV~~~~~~~~~~~~mt   93 (200)
                      .+++|+.-++...+.....+.....+...+|.+|+..+      .    .++..... -+.+. |...-...+       
T Consensus        23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~----~~~~~~~g~~~y~v~~~~gi~~~d-------   91 (211)
T 3b49_A           23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSK----MGETRLDGYSDFVVPPLEGFWWSE-------   91 (211)
T ss_dssp             SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGG----GSCCTTTTSCCBCCCCCEEEEEES-------
T ss_pred             CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCccceeccceeEEeecC-------
Confidence            36888999999999888776543235568899999887      4    11111111 11111 332221101       


Q ss_pred             CCceeccCCCeeEEEEEEeecCccCcc-----------CCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH
Q 028987           94 APVVTKSDEKKMVTMQFVLPEKYQKAE-----------EAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK  162 (200)
Q Consensus        94 ~pv~~~~~~~~~~tmsF~lP~~~~~~~-----------~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~  162 (200)
                      .|.......+-.|.+++-+|.... .+           ..|.+....|.+..+|+..+++..+.|...  .+.+-..+|.
T Consensus        92 ~~~~~~~~~~~~~~~~i~vp~~v~-~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~  168 (211)
T 3b49_A           92 GKFDLKDRDAWLWTSILRQPDFVT-EEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMH  168 (211)
T ss_dssp             SSCCTTCGGGEEEEEEEEECTTCC-HHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHH
T ss_pred             CccccCchhheEEEEEEEcCCccc-HHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHH
Confidence            111000011346888888886432 00           023333567999999999999999999765  3667778888


Q ss_pred             HHHHhCCC-eee---CcEEEEEeCCCCCC-CCCCeeeEEEEeC
Q 028987          163 KSLEKDGY-KVV---GQFLLARYNPPWTL-PPFRTNEVMIPVE  200 (200)
Q Consensus       163 ~~L~~~g~-~~~---~~~~~a~Yd~P~~~-p~~R~NEV~i~v~  200 (200)
                      +||.++|+ ...   +..+--.++.|... +-.-+-||+|+|+
T Consensus       169 ~wl~~~g~~~~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          169 QFMETEGLRNDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             HHHHHHTCCBCBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             HHHHHCCCccccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence            99999999 554   44455555777643 3334679999985

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=95.78  E-value=0.099  Score=39.40  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987          128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      +.+....+|+.++||.++.|...+ .+.+--..+. .||-+.|....+.+-+-.|+..-..+-.-.-||||+|+
T Consensus        85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~  157 (158)
T 3lur_A           85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVK  157 (158)
T ss_dssp             GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTTBCSSCEEEEECSSCTTSTTCEEEEEEEEC
T ss_pred             CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCeeCCCccEEEECCCCCCCcceEEEEEEEEc
Confidence            468999999999999999996543 4555555554 68999999888766677777643333455679999986

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=94.67  E-value=0.16  Score=41.74  Aligned_cols=71  Identities=13%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEeC----CCCCCC-CCCeeeEEEEeC
Q 028987          128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARYN----PPWTLP-PFRTNEVMIPVE  200 (200)
Q Consensus       128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Yd----~P~~~p-~~R~NEV~i~v~  200 (200)
                      +.+...++|+.++||..+.|.  .+.+.+--..|. +||.+.|+...+.+.+-.|.    ++...+ -.-.-||||+|+
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iPI~  286 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR  286 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEECSSCEEEEECGGGC----CCSCEEEEEEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCccCCCCcEEEEeeccccCCCCCCCceEEEEEEEee
Confidence            358999999999999999994  456778888886 99999999876654445564    333221 122459999984

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=94.32  E-value=0.69  Score=35.45  Aligned_cols=66  Identities=18%  Similarity=0.138  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCC--CeeeCcEEEEEeCCCCCCCCCCeeeEEEEeC
Q 028987          128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDG--YKVVGQFLLARYNPPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v~  200 (200)
                      +.+...++|+.++||-++.|... +.+.+--..+..||-+.|  +.....+-+-.|+..      -.-||||+|+
T Consensus       103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~~~~~pdfE~Y~~~------~~~eI~IpI~  170 (170)
T 3gk6_A          103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHKRAYTTDFEYYKSA------NTVEISIAVR  170 (170)
T ss_dssp             TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCCBCCSEEEEECCSS------SEEEEEEEBC
T ss_pred             CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcceecCcCCEEEECCC------CeEEEEEEEC
Confidence            56899999999999999999543 467777777777999998  777777777778653      2779999986

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=91.74  E-value=1.1  Score=33.17  Aligned_cols=68  Identities=12%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             CeEEEEeCCeEEEEEEecCccCh--HHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCCCCCCCeeeEEEEe
Q 028987          129 RVVIREEGERKYGVVKFGGVASD--EVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLPPFRTNEVMIPV  199 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~~p~~R~NEV~i~v  199 (200)
                      +|.|++.|+.+++.++..|...+  ..+.+.-.+|.+++..+|+...+..+...||-  .. -.=+=|+.++|
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~~~g~~~~iy~d~--~~-~~~~~~~~~~v   77 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKSPSGPPFARYFGM--SA-GTFEVEFGFPV   77 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEESC--TT-SCEEEEEEEEC
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC--CC-cceEEEEEEEe
Confidence            58999999999999999997532  23445667899999999987766555555562  22 23455666665

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=85.72  E-value=3  Score=32.76  Aligned_cols=59  Identities=12%  Similarity=-0.029  Sum_probs=45.0

Q ss_pred             CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHH------HhCCCeeeC------cE-EEEEe-CCCCC
Q 028987          128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSL------EKDGYKVVG------QF-LLARY-NPPWT  186 (200)
Q Consensus       128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L------~~~g~~~~~------~~-~~a~Y-d~P~~  186 (200)
                      -+|.|.++|+..++.++..|.+.+..+.+...+|..++      .++|+...+      .. ...-| |.|+.
T Consensus        23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~   95 (211)
T 3b49_A           23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFD   95 (211)
T ss_dssp             SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCC
T ss_pred             CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccc
Confidence            46899999999999999999766557888899999999      888876544      22 33334 77755

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=81.70  E-value=11  Score=26.33  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCC
Q 028987          129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWT  186 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~  186 (200)
                      ++.|++.|+..++.++..|... ..+.+.-.+|.+++..+++.. +..+...+|.|..
T Consensus         2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~~-~~~~gi~~~~~~~   57 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDE   57 (157)
T ss_dssp             CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCCC-SEEEEEECSCTTT
T ss_pred             CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCCC-CcEEEEECCCCCC
Confidence            4789999999999888887542 456677788999998888764 3334455666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	8e-39

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (326), Expect = 8e-39
 Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 9   SVETPKYEVIQST----FDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGN 64
           SVET  ++V+ +       YE R       A V                 +  Y+G    
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGG--- 62

Query: 65  PQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPK 124
             N K   + MT PV     P E+              +K + + F +P ++Q     P 
Sbjct: 63  -TNDKGVGMGMTVPVSFAVFPNED-----------GSLQKKLKVWFRIPNQFQ--GSPPA 108

Query: 125 PVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ-FLLARYNP 183
           P DE V I E         +FGG A +        +L+ +LE       G  +  A Y+P
Sbjct: 109 PSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDP 168

Query: 184 PWTLPPFRTNEVMI 197
           P   P  R NEV +
Sbjct: 169 PMK-PYGRRNEVWL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	98.4
d1r8ea2	157	Multidrug-binding domain of transcription activato	97.89
d1d5ya3	173	Rob transcription factor, C-terminal domain {Esche	91.32
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	89.13

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-56  Score=361.61  Aligned_cols=176  Identities=28%  Similarity=0.395  Sum_probs=161.2

Q ss_pred             cccccCccCCCCeEEEeeCC----CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCC
Q 028987            3 MVFGKISVETPKYEVIQSTF----DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAP   78 (200)
Q Consensus         3 ~~~g~~~~e~P~y~vl~~~~----~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~P   78 (200)
                      |++|  ++|||+|+||++.+    +||+|+|++++||||++.+++++.|...||++|++||+    |+|+++++|+||+|
T Consensus         2 ~~~~--~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~~~a~~~gF~~L~~YI~----G~N~~~~kI~MTaP   75 (184)
T d2gova1           2 SLFG--SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVG----GTNDKGVGMGMTVP   75 (184)
T ss_dssp             CCCC--SCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHH----TCBTTCCCCCCCCC
T ss_pred             cccc--cccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCChhhHHHhhhHHHhheec----cCCCCCcccccccc
Confidence            4566  88999999999865    79999999999999999999999999999999999998    88999999999999


Q ss_pred             eEEecCCchhhhhccCCceeccCCCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHH
Q 028987           79 VITKSSPEEEKIAMTAPVVTKSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKV  158 (200)
Q Consensus        79 V~~~~~~~~~~~~mt~pv~~~~~~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~  158 (200)
                      |++++.++..           ..|.+.++|||+||.+|+  ++||+|+|++|+|+++|+.++||++|+|++++.++.+++
T Consensus        76 V~~~~~~~~~-----------~~~~~~~~m~F~lP~~~~--~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~  142 (184)
T d2gova1          76 VSFAVFPNED-----------GSLQKKLKVWFRIPNQFQ--GSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHA  142 (184)
T ss_dssp             EEEEEEECTT-----------SCEEEEEEEEECCCHHHH--HSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHH
T ss_pred             eEEEEecCCC-----------CcccCcEEEEEEcchhhc--ccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHH
Confidence            9999754321           134678999999999998  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeeeCc-EEEEEeCCCCCCCCCCeeeEEEE
Q 028987          159 DKLKKSLEKDGYKVVGQ-FLLARYNPPWTLPPFRTNEVMIP  198 (200)
Q Consensus       159 ~~L~~~L~~~g~~~~~~-~~~a~Yd~P~~~p~~R~NEV~i~  198 (200)
                      ++|+++|+++|+.+.+. +++|+||+||++ |+|||||||.
T Consensus       143 ~~L~~~L~~~g~~~~~~~~~~a~Yd~P~~p-~~R~NEVw~v  182 (184)
T d2gova1         143 TQLRTTLEGTPATYQGDVYYCAGYDPPMKP-YGRRNEVWLV  182 (184)
T ss_dssp             HHHHHHTTTSSCCEEEEEEEEEESSCCSSS-SCCEEEEEEE
T ss_pred             HHHHHHHHHCCCcccCCCEEEEEeCCCCCC-CCcceeEEEE
Confidence            99999999999999875 578999999996 9999999983

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.1e-06  Score=64.80  Aligned_cols=150  Identities=19%  Similarity=0.229  Sum_probs=100.4

Q ss_pred             CeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccCC
Q 028987           23 DYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSDE  102 (200)
Q Consensus        23 ~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~~  102 (200)
                      +|||+..++.+.|.....+. +.+...++|.+|+.++.     +|    .+..+.+...-..         .|..+. ..
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~-~~e~i~~~w~~l~~~~~-----~~----~~~~~~~~~~~~~---------~p~~~~-~~   61 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGP-WEQTVKKGFEQLMMWVD-----SK----NIVPKEWVAVYYD---------NPDETP-AE   61 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESC-HHHHHHHHHHHHHHHHH-----HT----TCCCSEEEEEECS---------CTTTSC-GG
T ss_pred             CcEEEEECCEEEEEEEEEcC-cHHHHHHHHHHHHHHHH-----Hh----CCCCCCceEEEec---------CcCcCC-cc
Confidence            68999999999999988764 33457789999999996     23    2344444433321         121111 11


Q ss_pred             CeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHH-HHHHHhCCCeeeCcEEEEEe
Q 028987          103 KKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKL-KKSLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       103 ~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~a~Y  181 (200)
                      +-.+.+++.++....    .|. .+..|.+.++|+.++|+..+.|-..+  +.+....| .+||.++|+...+.+.+-.|
T Consensus        62 ~~~~~~~v~v~~~~~----~~~-~~~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~~~~~p~~E~Y  134 (155)
T d1jyha_          62 KLRCDTVVTVPGYFT----LPE-NSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYEMLPKPCFEVY  134 (155)
T ss_dssp             GCEEEEEEEECTTCC----CCS-SCTTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEEECSSCEEEEE
T ss_pred             ceeEEEEEEcCCccc----cCc-ccceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCeECCCccEEEE
Confidence            336888999987754    332 35569999999999999999997543  34444455 58999999988765554455


Q ss_pred             C-CCCCCCCCCeeeEEEEeC
Q 028987          182 N-PPWTLPPFRTNEVMIPVE  200 (200)
Q Consensus       182 d-~P~~~p~~R~NEV~i~v~  200 (200)
                      . .|...+.. .=||||+|+
T Consensus       135 ~~~~~~~~~~-~~ei~iPIk  153 (155)
T d1jyha_         135 LNNGAEDGYW-DIEMYVAVQ  153 (155)
T ss_dssp             CSCHHHHSSE-EEEEEEEEE
T ss_pred             cCCCCCCCCE-EEEEEEEEE
Confidence            3 34333222 249999985

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=0.00036  Score=51.79  Aligned_cols=153  Identities=9%  Similarity=-0.004  Sum_probs=101.5

Q ss_pred             CCeEEEEeCCceEEEEEeCCCCccCchhhHHHHHHHhhcccCCCCCCCCCcccCCCCeEEecCCchhhhhccCCceeccC
Q 028987           22 FDYEIRKYAPSVVAEVTYDPSTFKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVITKSSPEEEKIAMTAPVVTKSD  101 (200)
Q Consensus        22 ~~yEvR~Y~~~~wa~t~~~~~~~~~a~~~gF~~L~~YI~~~g~G~N~~~~~i~MT~PV~~~~~~~~~~~~mt~pv~~~~~  101 (200)
                      ++.-|+.=+.-..+++...+..-......+|.+|++|+.    .+|     +-...++.....-.+       + . + .
T Consensus         2 ~ev~i~~~~ei~i~~~~~e~i~p~~~~~~~~~~L~~~~~----~~~-----~~~~~~~G~~~~~~~-------~-~-~-~   62 (157)
T d1r8ea2           2 GEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIE----SAD-----GFTNNSYGATFSFQP-------Y-T-S-I   62 (157)
T ss_dssp             TCCEEEEECCEEEEEEECTTCCTTTCCGGGGHHHHHHHH----HHH-----SSCCCCEEEEECCCC-------C-S-C-G
T ss_pred             CceEEeccCcEEEEEEEecccCchHHHHHHHHHHHHHHH----HcC-----CCCCCceEEEEECCC-------c-c-c-C
Confidence            345667777778888887665444567789999999996    222     334455555543110       0 0 0 0


Q ss_pred             CCeeEEEEEEeecCccCccCCCCCCCCCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEe
Q 028987          102 EKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARY  181 (200)
Q Consensus       102 ~~~~~tmsF~lP~~~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Y  181 (200)
                      ....+.-+|.....    +.-+...++++.+...|+.++++..|.|...  .+.+.-.+|.+||+++|+...+..+=-..
T Consensus        63 ~~~~y~~~~~~~~~----~~~~~~~~~~~~~~~lp~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~~~g~~~E~y~  136 (157)
T d1r8ea2          63 DEMTYRHIFTPVLT----NKQISSITPDMEITTIPKGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLTVVSDVYELII  136 (157)
T ss_dssp             GGCCCSEEEEECCC----CSCCSSCCTTSEEEEECSEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred             cceEEEEEEEeccc----ccccCCccCCceEEecCCeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcCcCCCeEEEEE
Confidence            12234444443322    1123334788999999999999999999764  67778888999999999999887666667


Q ss_pred             CCCCCC--CCCCeeeEEEEe
Q 028987          182 NPPWTL--PPFRTNEVMIPV  199 (200)
Q Consensus       182 d~P~~~--p~~R~NEV~i~v  199 (200)
                      ..|+..  +-.-.-||.|+|
T Consensus       137 ~d~~~~~~~~~~~teI~ipv  156 (157)
T d1r8ea2         137 PIHYSPKKQEEYRVEMKIRI  156 (157)
T ss_dssp             ESCCCSSSCCCEEEEEEEEE
T ss_pred             cCCCCCCCHHHeEEEEEEEe
Confidence            777654  244466888876

>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Rob transcription factor, C-terminal domain
domain: Rob transcription factor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=1  Score=32.41  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             CCeEEEEeCCeEEEEEEecCccChHHHHHHHHHHH-HHHHhCCCeeeCcEEEEEe----CCCCCCC-CCCeeeEEEEeC
Q 028987          128 ERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLK-KSLEKDGYKVVGQFLLARY----NPPWTLP-PFRTNEVMIPVE  200 (200)
Q Consensus       128 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~a~Y----d~P~~~p-~~R~NEV~i~v~  200 (200)
                      ..+....+|+.++||.+|.|..  ..+.+-...|. +||-+.|+...+.+-+=.|    |.+...+ -.-.=|+||+|+
T Consensus        91 ~~~~~~~ip~g~YAvf~~~G~~--~~l~~~~~~iy~~wLP~sg~~~~~~~d~E~Y~~~~~~~~~~~~~~~~~e~~IPIk  167 (173)
T d1d5ya3          91 LTGHPVMLQGGEYVMFTYEGLG--TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR  167 (173)
T ss_dssp             TTCEEEEECCEEEEEEEEEEEG--GGHHHHHHHHHHTHHHHTTCEECSSCEEEEECGGGC----CCSCEEEEEEEEEEE
T ss_pred             CCCEEEEEcCcEEEEEEEEeCH--HHHHHHHHHHHHHhhhhCCCccCCCCCEEEEecccCCCCCCCCccEEEEEEEEEE
Confidence            4577788999999999999964  34666666664 6999999988877777777    4555431 123448899985

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.85  Score=31.62  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             CeEEEEeCCeEEEEEEecCccChHHHHHHHHHHHHHHHhCCCeeeCcEEEEEeCCCCCCC-CCCeeeEEEEe
Q 028987          129 RVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQFLLARYNPPWTLP-PFRTNEVMIPV  199 (200)
Q Consensus       129 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~a~Yd~P~~~p-~~R~NEV~i~v  199 (200)
                      ++.|++.|+.+|+..+..|.. .+.+.+--++|.+++.++++.. +......||.|-..+ -.-+-++.+.|
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~v~v   71 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIVP-KEWVAVYYDNPDETPAEKLRCDTVVTV   71 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCCC-SEEEEEECSCTTTSCGGGCEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCCC-CCceEEEecCcCcCCccceeEEEEEEc
Confidence            478999999999999988854 3457788889999999998854 344556677766532 12244555544