Citrus Sinensis ID: 028992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSKKKSSDLKYDIFGWAILAVGIVAWVGMANSRIPPPPAR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHcHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mefsqsdfDRLLLSEHNRKTaeanyakdpldadnlTRWGEALLELsqfesvsdSKKIINEAISKFEEalvidpakhytlwslgnahtscgfLTADLseakgdfdkaSECFQravdeeptnelYQKSLEVSTKAPELHMELHKhginqqtlgggssassaqsskkkssdlkydIFGWAILAVGIVAWVGmansrippppar
Flexible Loop (DISEMBL)
mefsqsdfDRLLLSEHNRKtaeanyakdpldaDNLTRWGEALLElsqfesvsdSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVdeeptnelyqKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSKKKSSDLKYDIFGWAILAVGIVAWVGMANSrippppar
Low Complexity Region (SEG)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLgggssassaqsskkkssDLKYDIFGWAILAVGIVAWVGMANSRIPPPPAR
Disordered region (IsUnstruct)
********************************DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE**********************************************************************LKYDIFGWAILAVGIVAWVGMA**********
Disordered Region (DISOPRED)
******D**RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS***********INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHM******************************LKYDIFGWAILAVGIVAWVGMA**********
Disordered Region (DISEMBL)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ*******************DLKYDIFGWAILAVGIVAWVGMANS********
Disordered Region (DISPRO)
**FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN********************SDLKYDIFGWAILAVGIVAWVGMANSRI******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSKKKSSDLKYDIFGWAILAVGIVAWVGMANSRIPPPPAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
P92792	204	Mitochondrial import rece	N/A	no	0.95	0.931	0.645	8e-65
P82873	210	Mitochondrial import rece	yes	no	1.0	0.952	0.528	1e-59
P82874	202	Mitochondrial import rece	no	no	0.985	0.975	0.54	2e-58
A2WYG9	201	Probable mitochondrial im	N/A	no	0.985	0.980	0.512	7e-52
P82805	187	Mitochondrial import rece	no	no	0.885	0.946	0.541	1e-51
Q5JJI4	202	Probable mitochondrial im	yes	no	0.985	0.975	0.510	2e-50
P82872	188	Mitochondrial import rece	no	no	0.92	0.978	0.489	3e-42

>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1

 Score =  246 bits (627), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 153/192 (79%), Gaps = 2/192 (1%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK
Sbjct: 4   QSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+
Sbjct: 64  LEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGG--GSSASSAQSSKKKSSDLKYDIFGWAILAVG 182
           KSLEV+ KAPELHME+H+HG  QQT+     +S S+  S K KSSDLKYDIFGW ILAVG
Sbjct: 124 KSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVG 183

Query: 183 IVAWVGMANSRI 194
           IVAWVG A S +
Sbjct: 184 IVAWVGFAKSNM 195

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.
Solanum tuberosum (taxid: 4113)

>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2

 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 145/210 (69%), Gaps = 10/210 (4%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+
Sbjct: 1   MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLND 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N
Sbjct: 61  AISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLG----------GGSSASSAQSSKKKSSDLK 170
           + Y+KSL+ S KAPELHM+    G+ QQ LG            S+ S +   KK++++  
Sbjct: 121 DTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFT 180

Query: 171 YDIFGWAILAVGIVAWVGMANSRIPPPPAR 200
           YD+ GW ILA GIVAWVGMA S  PPPPAR
Sbjct: 181 YDVCGWIILACGIVAWVGMAKSLGPPPPAR 210

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 142/200 (71%), Gaps = 3/200 (1%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct: 3   TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 62

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct: 63  KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 122

Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLG---GGSSASSAQSSKKKSSDLKYDIFGWAILA 180
            KSLE++ KAP+LH E +K G+  Q +G     +  SS     KKSSD KYD  GW ILA
Sbjct: 123 LKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILA 182

Query: 181 VGIVAWVGMANSRIPPPPAR 200
           +G+VAW+  A + +P  P R
Sbjct: 183 IGVVAWISFAKANVPVSPPR 202

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2

 Score =  203 bits (516), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 136/197 (69%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A S
Sbjct: 5   AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAES 64

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           K EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY
Sbjct: 65  KLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLY 124

Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSKKKSSDLKYDIFGWAILAVGI 183
           +KSL++S+KAPELHME+H+   +Q +    S++++ QS KKK SD  YD+FGW +L VG+
Sbjct: 125 RKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGM 184

Query: 184 VAWVGMANSRIPPPPAR 200
           V WVG+A S  PP   R
Sbjct: 185 VVWVGLAKSNAPPQAPR 201

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 141/194 (72%), Gaps = 17/194 (8%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K
Sbjct: 4   QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILK 61

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
             EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+
Sbjct: 62  LGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYR 121

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGG--GSSASSAQSSK-KKSSDLKYDIFGWAILAV 181
           KSL +++KAPELH             GG  G S++SA++ K KK+S+ KYD+FGW ILA 
Sbjct: 122 KSLTLASKAPELHT------------GGTAGPSSNSAKTMKQKKTSEFKYDVFGWVILAS 169

Query: 182 GIVAWVGMANSRIP 195
            +VAW+  ANS+ P
Sbjct: 170 YVVAWISFANSQTP 183

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 136/198 (68%), Gaps = 1/198 (0%)

Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           + SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A S
Sbjct: 5   AMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAES 64

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           K EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY
Sbjct: 65  KLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLY 124

Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQS-SKKKSSDLKYDIFGWAILAVG 182
           +KSL++S+KAPELHME+H+   +Q +    S++++ QS  KKK SD  YD+FGW +L VG
Sbjct: 125 RKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVG 184

Query: 183 IVAWVGMANSRIPPPPAR 200
           +V WVG+A S  PP   R
Sbjct: 185 MVVWVGLAKSNAPPQAPR 202

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 123/190 (64%), Gaps = 6/190 (3%)

Query: 8   FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+
Sbjct: 1   MDKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLED 60

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
           A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSL
Sbjct: 61  AILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSL 120

Query: 128 EVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSK----KKSSDLKYDIFGWAILAVGI 183
           E++ KAP+LH   HK+ +   +L GG    +  S K    KKSSD KY + GW ILA+G+
Sbjct: 121 EMADKAPQLHTGFHKNRL--LSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGV 178

Query: 184 VAWVGMANSR 193
           VA +     R
Sbjct: 179 VACISFRKLR 188

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
224072604	200	predicted protein [Populus trichocarpa]	0.985	0.985	0.71	6e-76
224057709	200	predicted protein [Populus trichocarpa]	0.98	0.98	0.69	2e-74
449450365	204	PREDICTED: mitochondrial import receptor	1.0	0.980	0.696	4e-74
356566216	201	PREDICTED: mitochondrial import receptor	1.0	0.995	0.656	9e-73
225451445	201	PREDICTED: mitochondrial import receptor	0.98	0.975	0.702	2e-70
255547728	206	Mitochondrial import receptor subunit TO	0.985	0.956	0.615	2e-70
359806671	210	uncharacterized protein LOC100819858 [Gl	0.97	0.923	0.651	6e-68
449494436	204	PREDICTED: mitochondrial import receptor	1.0	0.980	0.681	7e-68
255536895	205	Mitochondrial import receptor subunit TO	0.98	0.956	0.648	2e-67
351722735	201	uncharacterized protein LOC100527313 [Gl	1.0	0.995	0.641	2e-67

>gi|224072604|ref|XP_002303802.1| predicted protein [Populus trichocarpa] gi|222841234|gb|EEE78781.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 170/200 (85%), Gaps = 3/200 (1%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLL  EH RK+AEA YAKDPLDADNLT+WGEALLELSQF++V+++KK+INE
Sbjct: 1   MEFSQDDFDRLLRFEHTRKSAEATYAKDPLDADNLTKWGEALLELSQFQTVAEAKKMINE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEA++++P  +  +WS+GNA+TS  FLT DLSEAK  FDKA++ FQ+AVDE+ TN
Sbjct: 61  AISKLEEAMMLNPTAN-AMWSIGNANTSYAFLTPDLSEAKNYFDKAADYFQQAVDEDSTN 119

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS-AQSSKKKS-SDLKYDIFGWAI 178
           ELY KSLEV  KAPELHME+HKH  +QQT+GG SS SS A+ SKKK+ SDLKYDIFGW I
Sbjct: 120 ELYHKSLEVCAKAPELHMEIHKHSSSQQTMGGESSPSSNAKGSKKKANSDLKYDIFGWII 179

Query: 179 LAVGIVAWVGMANSRIPPPP 198
           LAVGIVAW+G+A S +PPPP
Sbjct: 180 LAVGIVAWMGIAKSHVPPPP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057709|ref|XP_002299299.1| predicted protein [Populus trichocarpa] gi|118481274|gb|ABK92583.1| unknown [Populus trichocarpa] gi|222846557|gb|EEE84104.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/200 (69%), Positives = 167/200 (83%), Gaps = 4/200 (2%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLL+ EH RKTAEA YA+DPLDA NLT+WGEALLELSQF++V+++KK+IN+
Sbjct: 1   MEFSQDDFDRLLMFEHARKTAEATYARDPLDATNLTKWGEALLELSQFQTVAEAKKMIND 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEAL+++P  +  +WS+GNA+TS  FLT DL EAK  FDKA+  FQ+AVDE+P N
Sbjct: 61  AISKLEEALMLNPTSN-AMWSIGNANTSYAFLTPDLDEAKSYFDKAANYFQQAVDEDPNN 119

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSS--ASSAQSSKKKS-SDLKYDIFGWA 177
           ELY+KSLEV  KAPELH E+HKH  +QQ +GGG S  +S+A+ SKKK+ SDLKYDIFGW 
Sbjct: 120 ELYRKSLEVCAKAPELHTEIHKHSSSQQIMGGGGSTASSNAKGSKKKTNSDLKYDIFGWI 179

Query: 178 ILAVGIVAWVGMANSRIPPP 197
           ILAVGIVAWVGMA S +PPP
Sbjct: 180 ILAVGIVAWVGMAKSNVPPP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450365|ref|XP_004142933.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 164/204 (80%), Gaps = 4/204 (1%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA +PLDADNLT+WG ALLELSQF+SVSDSK +I +
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAANPLDADNLTKWGGALLELSQFQSVSDSKNMIKD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+ K EEAL I+P KH  LW +GNAHTS  FLT D  EA+  FDKA ECFQ+A+DE+P N
Sbjct: 61  AVEKLEEALTINPTKHDALWCIGNAHTSQAFLTPDRDEAQVYFDKAQECFQKALDEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTL----GGGSSASSAQSSKKKSSDLKYDIFGW 176
           ELY KSLEV+ KAP  H E+HKHG +QQ+     GG ++AS+ +SSKKKSSDLKYDIFGW
Sbjct: 121 ELYHKSLEVAAKAPGFHSEIHKHGTSQQSAGSSGGGATAASNPKSSKKKSSDLKYDIFGW 180

Query: 177 AILAVGIVAWVGMANSRIPPPPAR 200
            ILAVGIVAWVGM  S +PPPP+R
Sbjct: 181 VILAVGIVAWVGMTKSHVPPPPSR 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566216|ref|XP_003551330.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Glycine max]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RK+AEANYA++PLDADNLT+WG AL+ELS F++  D+K +I++
Sbjct: 1   MEFSQDDFDRLLLFEHTRKSAEANYAENPLDADNLTKWGGALIELSSFQAPKDAKAMIDD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EEAL+I+P KH TLW LGNA+TS  FL  D++EAKG FDKA + FQ+AVDE+P N
Sbjct: 61  ALSKLEEALLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALDYFQKAVDEDPEN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSSKK-KSSDLKYDIFGWAIL 179
           +LY+KSL+V+ KAPELHME+HK+G+   +  G S+ S  + SK+ KS+D KYDIFGW IL
Sbjct: 121 DLYRKSLQVAIKAPELHMEIHKNGLGLMSNAGSSATSKEKESKRQKSNDFKYDIFGWIIL 180

Query: 180 AVGIVAWVGMANSRIPPPPAR 200
           AVGIVAWVGMA S IPPPP R
Sbjct: 181 AVGIVAWVGMAKSNIPPPPPR 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451445|ref|XP_002269795.1| PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera] gi|296082346|emb|CBI21351.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 159/198 (80%), Gaps = 2/198 (1%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           QSDFDRLL  EH RKTAEA YAK+P DADNLTRWG ALLELSQF+SV DSKK+I +AISK
Sbjct: 4   QSDFDRLLFFEHARKTAEATYAKNPQDADNLTRWGGALLELSQFQSVPDSKKMIQDAISK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL+++P KH TLW LGNAHTS  FLT D  EA+  FDKAS+ FQ+AVDE+P N+LY+
Sbjct: 64  LEEALMLNPNKHDTLWCLGNAHTSHAFLTPDQDEARDYFDKASQYFQQAVDEDPGNDLYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGG--GSSASSAQSSKKKSSDLKYDIFGWAILAVG 182
           KSLEV+ KAPELHME+HK G +QQ +G    +S  +  S KKKSSDLKYDIFGW ILAVG
Sbjct: 124 KSLEVAAKAPELHMEIHKQGFSQQAMGAGSSTSTGTKTSKKKKSSDLKYDIFGWIILAVG 183

Query: 183 IVAWVGMANSRIPPPPAR 200
           IVAWVG A S +PPPP R
Sbjct: 184 IVAWVGFAKSHVPPPPPR 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547728|ref|XP_002514921.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223545972|gb|EEF47475.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 160/203 (78%), Gaps = 6/203 (2%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           M+F+Q DFDR L  EH RK+AE  YAKDPLD+DNLT+WG +L+ELSQF  + D+K+++ E
Sbjct: 1   MDFTQEDFDRFLTFEHARKSAETAYAKDPLDSDNLTKWGGSLIELSQFHPLQDAKRMLTE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           AISK EEALVI+P K  TLW +GNA+TS  FLT DL+ A+G F KA++ FQ+AVD +P+N
Sbjct: 61  AISKLEEALVINPVKAETLWYIGNANTSFAFLTPDLTVAEGYFSKAADYFQQAVDADPSN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSS------KKKSSDLKYDIF 174
           ELY+KSLEV+ KAPELHME+HK G+++Q +G G + +SA S+       KKSSD +YDIF
Sbjct: 121 ELYRKSLEVTAKAPELHMEIHKQGVDEQAMGAGPAGASASSNSKVSNKNKKSSDFRYDIF 180

Query: 175 GWAILAVGIVAWVGMANSRIPPP 197
           GW ILAVGIV WVGMA ++IPPP
Sbjct: 181 GWVILAVGIVTWVGMAKTQIPPP 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806671|ref|NP_001241027.1| uncharacterized protein LOC100819858 [Glycine max] gi|255647408|gb|ACU24169.1| unknown [Glycine max]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 151/201 (75%), Gaps = 7/201 (3%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           M+  QS+FDRLL  EH RK AEA Y K+PLDADNLTRWG ALLELSQF+S  +SKK+  E
Sbjct: 1   MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQE 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EEAL ++P KH TLW LGNAHTS  FL  D  EAK  FDKA+E FQ+AVDE+P+N
Sbjct: 61  AVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGIN-------QQTLGGGSSASSAQSSKKKSSDLKYDI 173
           ELY+KSLEV+ KAPELH+E+HKHG           T G  +SAS+    KKKSSDLKYDI
Sbjct: 121 ELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNTQKKKKSSDLKYDI 180

Query: 174 FGWAILAVGIVAWVGMANSRI 194
           FGW ILAVGIVAWVG A S +
Sbjct: 181 FGWIILAVGIVAWVGFAKSNL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494436|ref|XP_004159545.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 160/204 (78%), Gaps = 4/204 (1%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA +PLDADNLT+WG ALLELSQF+SVSDSK +I +
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAANPLDADNLTKWGGALLELSQFQSVSDSKNMIKD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+ K EEAL I+P KH  LW +GNAHTS  FLT D  EA+  FDKA ECFQ+A+DE+P N
Sbjct: 61  AVGKLEEALTINPTKHDALWCIGNAHTSQAFLTPDRDEAQVYFDKAQECFQKALDEDPGN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQSS----KKKSSDLKYDIFGW 176
           ELY KSLEV+ KAP  H E+HKHG +QQ+ G     ++A S+    KKKSSDLKYDIFGW
Sbjct: 121 ELYHKSLEVAAKAPGFHSEIHKHGSSQQSAGSSGGGATAASNPKSSKKKSSDLKYDIFGW 180

Query: 177 AILAVGIVAWVGMANSRIPPPPAR 200
            ILAVGIVAWVGM  S +PPPP+R
Sbjct: 181 VILAVGIVAWVGMTKSHVPPPPSR 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536895|ref|XP_002509514.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223549413|gb|EEF50901.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/202 (64%), Positives = 158/202 (78%), Gaps = 6/202 (2%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           Q+DFDR+L  EH RKTAEA YAK+PLDA+NLTRWG ALLEL+QF++V DSKK+I + I+K
Sbjct: 4   QNDFDRILFFEHARKTAEATYAKNPLDAENLTRWGGALLELAQFQNVPDSKKMILDGITK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
            EEAL+I P KH TLW +GNAHTS  FLT DL EAK  FDKA+  FQ+AV+E+P NELY+
Sbjct: 64  LEEALLIQPKKHDTLWCIGNAHTSFAFLTPDLDEAKESFDKATVYFQQAVEEDPENELYR 123

Query: 125 KSLEVSTKAPELHMELHKHGINQQTLGGGSSASS------AQSSKKKSSDLKYDIFGWAI 178
           KSLEV+ KAPELHME+H+HG+ QQ +G   ++          S KKK SDLKYDIFGW I
Sbjct: 124 KSLEVAAKAPELHMEIHRHGLGQQAMGAAPASGPSTSSSAKTSKKKKDSDLKYDIFGWVI 183

Query: 179 LAVGIVAWVGMANSRIPPPPAR 200
           LAVGIVAW+G A S++PPPP R
Sbjct: 184 LAVGIVAWIGFAKSQMPPPPPR 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722735|ref|NP_001238022.1| uncharacterized protein LOC100527313 [Glycine max] gi|255632065|gb|ACU16385.1| unknown [Glycine max]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 161/201 (80%), Gaps = 1/201 (0%)

Query: 1   MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           MEFSQ DFDRLLL EH RKTAEANYA++P DADNLTRWG AL+ELS F++  D+K +I++
Sbjct: 1   MEFSQDDFDRLLLFEHTRKTAEANYAENPQDADNLTRWGGALIELSSFQAPRDAKAMIDD 60

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A+SK EE+L+I+P KH TLW LGNA+TS  FL  D++EAKG FDKA E FQ+A +E+P N
Sbjct: 61  ALSKLEESLLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALEYFQKAAEEDPEN 120

Query: 121 ELYQKSLEVSTKAPELHMELHKHGINQQTLGGGS-SASSAQSSKKKSSDLKYDIFGWAIL 179
           +LY+KSL+V+ KAPELHME+HK+G+   +  G S ++   +S K+KS+D KYDIFGW IL
Sbjct: 121 DLYRKSLQVAVKAPELHMEIHKNGLGLMSNAGSSATSKEKESKKQKSNDFKYDIFGWIIL 180

Query: 180 AVGIVAWVGMANSRIPPPPAR 200
           AVGIVAWVGMA S I PPP R
Sbjct: 181 AVGIVAWVGMAKSNILPPPPR 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2015904	210	TOM20-2 "AT1G27390" [Arabidops	1.0	0.952	0.504	5.1e-51
TAIR|locus:2092045	202	TOM20-3 "AT3G27080" [Arabidops	0.985	0.975	0.505	2.2e-50
TAIR|locus:2167737	187	TOM20-4 "AT5G40930" [Arabidops	0.9	0.962	0.502	1.3e-43

TAIR|locus:2015904 TOM20-2 "AT1G27390" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 106/210 (50%), Positives = 135/210 (64%)

Query:     1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
             MEFS +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+
Sbjct:     1 MEFSTADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLND 60

Query:    61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N
Sbjct:    61 AISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGN 120

Query:   121 ELYQKSLEVSTKAPELHMELHKHGINQQTLX----------XXXXXXXXXXXXXXXXDLK 170
             + Y+KSL+ S KAPELHM+    G+ QQ L                           +  
Sbjct:   121 DTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFT 180

Query:   171 YDIFGWAILAVGIVAWVGMANSRIPPPPAR 200
             YD+ GW ILA GIVAWVGMA S  PPPPAR
Sbjct:   181 YDVCGWIILACGIVAWVGMAKSLGPPPPAR 210

GO:0005739 "mitochondrion" evidence=ISM;IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2092045 TOM20-3 "AT3G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 101/200 (50%), Positives = 134/200 (67%)

Query:     4 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
             ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct:     3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 62

Query:    64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
             KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct:    63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 122

Query:   124 QKSLEVSTKAPELHMELHKHGINQQTLXXXXXXX---XXXXXXXXXXDLKYDIFGWAILA 180
              KSLE++ KAP+LH E +K G+  Q +                    D KYD  GW ILA
Sbjct:   123 LKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILA 182

Query:   181 VGIVAWVGMANSRIPPPPAR 200
             +G+VAW+  A + +P  P R
Sbjct:   183 IGVVAWISFAKANVPVSPPR 202

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2167737 TOM20-4 "AT5G40930" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 96/191 (50%), Positives = 127/191 (66%)

Query:     5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
             Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K
Sbjct:     4 QNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILK 61

Query:    65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
               EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+
Sbjct:    62 LGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYR 121

Query:   125 KSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWAILAVGIV 184
             KSL +++KAPELH      G                       + KYD+FGW ILA  +V
Sbjct:   122 KSLTLASKAPELHTG----GT-----AGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVV 172

Query:   185 AWVGMANSRIP 195
             AW+  ANS+ P
Sbjct:   173 AWISFANSQTP 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       183   0.00076  110 3  11 23  0.47    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.05u 0.07s 19.12t   Elapsed:  00:00:01
  Total cpu time:  19.05u 0.07s 19.12t   Elapsed:  00:00:01
  Start:  Fri May 10 01:36:59 2013   End:  Fri May 10 01:37:00 2013

GO:0005739 "mitochondrion" evidence=ISM;IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92792	TOM20_SOLTU	No assigned EC number	0.6458	0.95	0.9313	N/A	no
A2WYG9	TOM20_ORYSI	No assigned EC number	0.5126	0.985	0.9800	N/A	no
P82873	TO202_ARATH	No assigned EC number	0.5285	1.0	0.9523	yes	no
Q5JJI4	TOM20_ORYSJ	No assigned EC number	0.5101	0.985	0.9752	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam06552	186	pfam06552, TOM20_plant, Plant specific mitochondri	1e-93
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04

>gnl|CDD|191555 pfam06552, TOM20_plant, Plant specific mitochondrial import receptor subunit TOM20

 Score =  270 bits (692), Expect = 1e-93
 Identities = 117/186 (62%), Positives = 148/186 (79%), Gaps = 2/186 (1%)

Query: 8   FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
           FDRLL+ EH RK+AEA Y K+PLDADNLTRWG ALLELSQF+SV D+K++IN+AISK EE
Sbjct: 1   FDRLLMFEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKQMINDAISKLEE 60

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
           ALVI+P KH  LW +GNA+TS  FLT D +EAK +FDKA++ FQ+AVDE+P N+LY+KSL
Sbjct: 61  ALVINPKKHDALWCIGNAYTSFAFLTPDPTEAKENFDKATQFFQQAVDEQPDNDLYRKSL 120

Query: 128 EVSTKAPELHMELHKHGINQQTLGGGSSASSAQSS--KKKSSDLKYDIFGWAILAVGIVA 185
           E++ KAPELH E HK G+  Q +GG + +S +Q +   KKSSD KYD+ GW ILA+G+VA
Sbjct: 121 EMAAKAPELHTEFHKQGLGSQIMGGEAPSSPSQKTVKNKKSSDFKYDVMGWVILAIGVVA 180

Query: 186 WVGMAN 191
           W+  A 
Sbjct: 181 WISFAK 186

This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria. Length = 186

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 54  SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113
                +EA+  +E+AL +DP      ++L  A+              G +++A E +++A
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-----------LGKYEEALEDYEKA 60

Query: 114 VDEEPTN 120
           ++ +P N
Sbjct: 61  LELDPDN 67

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.68
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.62
KOG0553	304	consensus TPR repeat-containing protein [General f	99.6
PRK11189	296	lipoprotein NlpI; Provisional	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
PRK12370	553	invasion protein regulator; Provisional	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
PRK12370	553	invasion protein regulator; Provisional	99.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG1125	579	consensus TPR repeat-containing protein [General f	99.35
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.33
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.29
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.24
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.22
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.22
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.19
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.15
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.15
PLN02789	320	farnesyltranstransferase	99.13
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.1
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.09
PLN02789	320	farnesyltranstransferase	99.08
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.07
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.05
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.05
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.98
PRK10803	263	tol-pal system protein YbgF; Provisional	98.98
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
KOG0553	304	consensus TPR repeat-containing protein [General f	98.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.95
PF13371	73	TPR_9: Tetratricopeptide repeat	98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.93
PRK15331	165	chaperone protein SicA; Provisional	98.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.88
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.87
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.86
PRK11906	458	transcriptional regulator; Provisional	98.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.82
PRK11906	458	transcriptional regulator; Provisional	98.81
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.79
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.74
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.73
PRK14574	822	hmsH outer membrane protein; Provisional	98.73
KOG1129	478	consensus TPR repeat-containing protein [General f	98.69
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.61
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.56
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.5
KOG2076	895	consensus RNA polymerase III transcription factor	98.5
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.5
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.47
PRK14574	822	hmsH outer membrane protein; Provisional	98.46
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.45
PF13431	34	TPR_17: Tetratricopeptide repeat	98.45
KOG1129	478	consensus TPR repeat-containing protein [General f	98.44
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.4
KOG4234	271	consensus TPR repeat-containing protein [General f	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.37
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.37
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.36
KOG2003	840	consensus TPR repeat-containing protein [General f	98.35
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.35
PRK10803	263	tol-pal system protein YbgF; Provisional	98.34
PF13428	44	TPR_14: Tetratricopeptide repeat	98.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.29
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.29
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.29
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.27
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.23
KOG2076	895	consensus RNA polymerase III transcription factor	98.2
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.17
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.16
PF13512	142	TPR_18: Tetratricopeptide repeat	98.1
KOG3364	149	consensus Membrane protein involved in organellar	98.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.09
PF12688	120	TPR_5: Tetratrico peptide repeat	98.09
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.01
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.95
PRK15331	165	chaperone protein SicA; Provisional	97.95
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.95
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.88
KOG4555	175	consensus TPR repeat-containing protein [Function	97.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.87
PF13431	34	TPR_17: Tetratricopeptide repeat	97.86
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.81
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.76
PF13512	142	TPR_18: Tetratricopeptide repeat	97.73
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.7
KOG2003	840	consensus TPR repeat-containing protein [General f	97.7
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.63
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.61
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.55
KOG4555	175	consensus TPR repeat-containing protein [Function	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.5
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.48
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.42
KOG4234	271	consensus TPR repeat-containing protein [General f	97.42
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.41
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.37
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.36
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.36
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.36
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.31
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.27
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.25
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.19
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.15
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.11
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.05
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.03
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.96
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.94
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.9
PLN03077	857	Protein ECB2; Provisional	96.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.81
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.7
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.69
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.56
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.46
PRK10941	269	hypothetical protein; Provisional	96.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.38
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.33
PLN03077	857	Protein ECB2; Provisional	96.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.26
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.15
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.15
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.06
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.02
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.85
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.65
PLN03218	1060	maturation of RBCL 1; Provisional	95.63
PRK04841	903	transcriptional regulator MalT; Provisional	95.62
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.58
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.45
PLN03218	1060	maturation of RBCL 1; Provisional	95.43
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.43
PRK10941	269	hypothetical protein; Provisional	95.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.16
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.07
KOG1310	758	consensus WD40 repeat protein [General function pr	95.04
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.92
PRK04841	903	transcriptional regulator MalT; Provisional	94.71
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.6
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.39
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.38
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.32
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.29
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.85
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.76
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.75
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.28
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.18
KOG1586	288	consensus Protein required for fusion of vesicles	93.05
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.93
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.9
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.79
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.57
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.02
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	91.36
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.14
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.09
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	91.03
KOG2471	696	consensus TPR repeat-containing protein [General f	90.86
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.67
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.53
COG2912	269	Uncharacterized conserved protein [Function unknow	90.29
KOG0529	421	consensus Protein geranylgeranyltransferase type I	90.11
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.92
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.91
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.8
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.79
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.51
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.92
COG5191	435	Uncharacterized conserved protein, contains HAT (H	88.86
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.68
COG2912	269	Uncharacterized conserved protein [Function unknow	88.67
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.52
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.08
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.61
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	87.5
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.51
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.08
KOG1585	308	consensus Protein required for fusion of vesicles	85.98
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	85.87
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.82
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	84.93
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.91
KOG2471	696	consensus TPR repeat-containing protein [General f	84.87
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.79
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	84.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	84.37
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.46
KOG3364	149	consensus Membrane protein involved in organellar	83.35
COG3947	361	Response regulator containing CheY-like receiver a	82.71
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.71
smart00299	140	CLH Clathrin heavy chain repeat homology.	81.65
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.64
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	80.97
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	80.3
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.22
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.16
KOG0529	421	consensus Protein geranylgeranyltransferase type I	80.06

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=100.00  E-value=2.1e-64  Score=411.11  Aligned_cols=184  Identities=68%  Similarity=1.067  Sum_probs=127.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ||||++||+||+.++.+|..||+|++++++||++|+++++|+++.+++.|+++||++|++||.|||++++++||||++|+
T Consensus         1 ~~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    1 FERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccccCCCCCcc--hhhhhccc
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSAS--SAQSSKKK  165 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  165 (200)
                      ++|||+||..+|++.|++|..||++|++++|+|+.|+++|++..|+|++|.++++++++||+++++++++  .+.+|+||
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~~q~~~~~~~~~~~~~~~k~kk  160 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLGQQAMGGASSSSSSAKSSKKKK  160 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS----------------------
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccCCCCCCCCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999876653333  38899999


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHhh
Q 028992          166 SSDLKYDIFGWAILAVGIVAWVGMAN  191 (200)
Q Consensus       166 ~~~~~y~~~g~~~l~~~~~~~~~~~~  191 (200)
                      +|||||||+||||||+|||+||||||
T Consensus       161 ~sd~~ydv~gwvil~~givawv~~ak  186 (186)
T PF06552_consen  161 SSDFKYDVFGWVILAVGIVAWVGMAK  186 (186)
T ss_dssp             --------------------------
T ss_pred             ccchhhhhcchHHHHHHHHHHHhhcC
Confidence            99999999999999999999999997

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=3.2e-16  Score=147.27  Aligned_cols=158  Identities=22%  Similarity=0.235  Sum_probs=135.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKFEE   67 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~le~   67 (200)
                      +..-.|+..|++|+.++|+.+++++|||++|-++.+|.....                        -.|.++-||.+|++
T Consensus       232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr  311 (966)
T KOG4626|consen  232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR  311 (966)
T ss_pred             chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence            455678899999999999999999999999999888865321                        22668999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHH
Q 028992           68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKS  126 (200)
Q Consensus        68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kA  126 (200)
                      ||+++|+.++++.|||+++...|           +..+|..||.+|+.+.|+++                     .|+++
T Consensus       312 al~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a  380 (966)
T KOG4626|consen  312 ALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA  380 (966)
T ss_pred             HHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999988           99999999999999999997                     99999


Q ss_pred             HHhCCCChHHHHHHHHHHHhccccCCCCCcch--hhhhcccccchhhhhhhHHHHHHH
Q 028992          127 LEVSTKAPELHMELHKHGINQQTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVG  182 (200)
Q Consensus       127 le~~~k~~e~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~  182 (200)
                      |++.|...++|.||+.++-.|+-. .+++..+  +.+.++...|. |..+|-+.=-.|
T Consensus       381 l~v~p~~aaa~nNLa~i~kqqgnl-~~Ai~~YkealrI~P~fAda-~~NmGnt~ke~g  436 (966)
T KOG4626|consen  381 LEVFPEFAAAHNNLASIYKQQGNL-DDAIMCYKEALRIKPTFADA-LSNMGNTYKEMG  436 (966)
T ss_pred             HhhChhhhhhhhhHHHHHHhcccH-HHHHHHHHHHHhcCchHHHH-HHhcchHHHHhh
Confidence            999999999999999999866654 5577777  57777888887 777776665555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=3.6e-16  Score=146.96  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=110.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .-+++.++|...|.+|++.+|..+-+|.+||.++...|+.          .+||.+|++|+++||+.+++|+|||++|..
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei----------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI----------WLAIQHYEEAVKLDPNFLDAYINLGNVYKE  264 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH----------HHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence            4567889999999999999999999999999999888776          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .+           .||.|+.||++|+.+.|+++                     .|+++|++.|..|++|.||++++-..
T Consensus       265 ~~-----------~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~  333 (966)
T KOG4626|consen  265 AR-----------IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK  333 (966)
T ss_pred             Hh-----------cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence            88           99999999999999999997                     89999999999999999999988766


Q ss_pred             ccc
Q 028992          148 QTL  150 (200)
Q Consensus       148 ~~~  150 (200)
                      +.+
T Consensus       334 G~V  336 (966)
T KOG4626|consen  334 GSV  336 (966)
T ss_pred             cch
Confidence            544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.63  E-value=6.8e-15  Score=115.96  Aligned_cols=96  Identities=15%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .-.++.|++|++.+++++..+|.+++++.++|.++..+|++          ++|+..|++|++++|+++++++++|.++.
T Consensus        34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----------TTAINFYGHALMLDASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      ..|           ++++|+.+|++|++++|++..|.
T Consensus       104 ~~g-----------~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359        104 MMG-----------EPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCChHHH
Confidence            999           99999999999999999987555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.62  E-value=1.1e-14  Score=137.92  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=132.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      .++.+++|+..++++++++|+++..+.++|.++..+|++          ++|+..|+++++++|+++++++++|.++...
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP----------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            467889999999999999999999999999999998888          9999999999999999999999999999998


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      |           ++++|+.+|+++++++|++.                     .|+++++..|+.++++..++..+..++
T Consensus       413 g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       413 G-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             C-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            8           99999999999999999985                     778888999999999999999998665


Q ss_pred             ccCCCCCcch--hhhhcccccchhhhhhhHHHHHHHHHHHHH
Q 028992          149 TLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVGIVAWVG  188 (200)
Q Consensus       149 ~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~~~~~~~  188 (200)
                      -. ..+...+  .....+++...++.+..|+..+..+..|.|
T Consensus       482 ~~-~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       482 KF-DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             CH-HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            32 1233333  233445566677778888777766666643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=4.9e-15  Score=129.25  Aligned_cols=101  Identities=24%  Similarity=0.356  Sum_probs=95.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      =+-+.|++|+..|.+|++++|+|+-.+.|.+-+|.++|++          ++||.-++.||.|||....+|--||.+|+.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~----------~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY----------EDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch----------HHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            3445899999999999999999999999999999999999          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS  130 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~  130 (200)
                      +|           +|++|++.|+|||+++|+|+.|+..|++.
T Consensus       162 ~g-----------k~~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  162 LG-----------KYEEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             cC-----------cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            99           99999999999999999999999888653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.57  E-value=2.9e-14  Score=124.39  Aligned_cols=93  Identities=24%  Similarity=0.339  Sum_probs=89.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +++++.+++|+..++++++++|+++++++++|.++..+|++          ++|++.|++|++++|++..+++++|.++.
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+++|+++++++|++.
T Consensus       144 ~~g-----------~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        144 YGG-----------RYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            988           99999999999999999986

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1.5e-13  Score=108.31  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992           19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      ..++++++++|++   ++.+|.++...|++          ++|+..|++++.++|.++++|.++|.++...|        
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------   72 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDY----------SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------   72 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------
Confidence            4678889999885   67889999999998          99999999999999999999999999999999        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           99 AKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                         ++++|+.+|++|++++|++.                     .|+++++++|+.++.+.+.+.+..
T Consensus        73 ---~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         73 ---EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             ---hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence               99999999999999999986                     677888888888888877776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.52  E-value=3.4e-13  Score=126.92  Aligned_cols=115  Identities=14%  Similarity=0.065  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .+++|+..++++++++|++++++..+|.++...|++          ++|+..|++|++++|+++.+|+++|.++...|  
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G--  386 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY----------IVGSLLFKQANLLSPISADIKYYYGWNLFMAG--  386 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--
Confidence            479999999999999999999999999999999998          99999999999999999999999999999999  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhC-CCChHHHHHHHHHHHhcc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS-TKAPELHMELHKHGINQQ  148 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~-~k~~e~~~~l~~~~~~~~  148 (200)
                               ++++|+.+|++|++++|++.                     .++++++.+ |..|.+|..++..+..++
T Consensus       387 ---------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        387 ---------QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             ---------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence                     99999999999999999975                     455666554 788999999998886544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=3.7e-13  Score=102.52  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+.+.+++|++.+++++..+|.+++.+.++|.++..++++          ++|+..|+++++++|++++.++++|.+|..
T Consensus        28 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        28 YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY----------EEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999998          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~  129 (200)
                      .|           ++++|+.+|+++++++|++..+......
T Consensus        98 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~  127 (135)
T TIGR02552        98 LG-----------EPESALKALDLAIEICGENPEYSELKER  127 (135)
T ss_pred             cC-----------CHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            88           9999999999999999999876655543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=99.46  E-value=1.8e-12  Score=121.98  Aligned_cols=123  Identities=15%  Similarity=0.076  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .+++|++.++++++++|+++.++..+|.++..+++... .+..+.+++|+..+++|+++||+++.+|..+|.++...|  
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--  352 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS--  352 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--
Confidence            46899999999999999999999999999887765422 123455799999999999999999999999999999988  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                               ++++|+.+|++|++++|++.                     .|+++++++|..+..+..++..++.+
T Consensus       353 ---------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        353 ---------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence                     99999999999999999997                     88899999999998877766555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.44  E-value=1.8e-12  Score=116.24  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=92.5

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.-+.+.|++|++.|+++++++|+++.+++++|.++..+|++          ++|+..+++|++++|+++.+|+.+|.+|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~----------~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF----------TEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            344567999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ..+|           +|++|+.+|+++++++|++...+..+
T Consensus        81 ~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         81 MKLE-----------EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999           99999999999999999998544433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.44  E-value=2.4e-12  Score=122.09  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      ..++.+++|+..++++++.+|+++++++++|.++..+|++          ++|+..|+++++++|++..++.++|.++..
T Consensus       376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF----------AQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777777777666          555555555555555555555555555555


Q ss_pred             cC
Q 028992           89 CG   90 (200)
Q Consensus        89 ~G   90 (200)
                      +|
T Consensus       446 ~g  447 (615)
T TIGR00990       446 EG  447 (615)
T ss_pred             CC
Confidence            55

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.42  E-value=2.3e-12  Score=128.85  Aligned_cols=91  Identities=12%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +++.+++|++.++++++++|++++++.++|.+|...|++          ++|+..|++|++++|+++++++++|.++..+
T Consensus       621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            444555555555555555555555555555555555555          6666666666666666666666666666665


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |           ++++|+.+|++|++++|++.
T Consensus       691 G-----------d~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        691 D-----------DMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             C-----------CHHHHHHHHHHHHhcCCCCc
Confidence            5           66666666666666666664

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.41  E-value=1.3e-12  Score=89.33  Aligned_cols=68  Identities=28%  Similarity=0.518  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcC-HHHHHH
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASE  108 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~-~d~A~~  108 (200)
                      ++++.|.++|.+++..+++          ++|+..|++|+++||+++.+|+++|.+|..+|           + +++|++
T Consensus         1 e~a~~~~~~g~~~~~~~~~----------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-----------~~~~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDY----------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-----------KDYEEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-----------THHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----------ccHHHHHH
Confidence            4789999999999999998          99999999999999999999999999999976           5 999999


Q ss_pred             HHHHHHHhCC
Q 028992          109 CFQRAVDEEP  118 (200)
Q Consensus       109 ~fqkAl~l~P  118 (200)
                      +|++|++++|
T Consensus        60 ~~~~al~l~P   69 (69)
T PF13414_consen   60 DFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHcCc
Confidence            9999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=5.3e-12  Score=104.72  Aligned_cols=92  Identities=13%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hhc
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-TSC   89 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~-~~~   89 (200)
                      ....++++..++++++.+|+|++.|..+|.++..++++          ++|+.+|++|++++|++++++.++|.++ ...
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~----------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~  121 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY----------DNALLAYRQALQLRGENAELYAALATVLYYQA  121 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            44568888999999999999999999999999999888          9999999999999999999999999985 565


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |         ...+++|..+++++++++|++.
T Consensus       122 g---------~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370        122 G---------QHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             C---------CCCcHHHHHHHHHHHHhCCCCh
Confidence            6         1126999999999999999885

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=5e-12  Score=104.86  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=86.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al-~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +-+++.+++|+..++++++++|++++++..+|.++ ...|++        +.++|+..|+++++++|+++.++++||.++
T Consensus        83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370         83 YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            45678999999999999999999999999999987 555652        129999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..+|           +|++|+.+|+++++++|.+.
T Consensus       155 ~~~g-----------~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        155 FMQA-----------DYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHcC-----------CHHHHHHHHHHHHhhCCCCc
Confidence            9999           99999999999999998876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.40  E-value=1.7e-11  Score=97.69  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|++..++..+|.++...|++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL----------EKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34567999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCC--CCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      ..|           ++++|+.+|+++++..+  ...                     .+.++++..|+.++.+..++..+
T Consensus       111 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       111 QQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             Hcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            988           99999999999998542  221                     77888899999999999999888


Q ss_pred             Hhccc
Q 028992          145 INQQT  149 (200)
Q Consensus       145 ~~~~~  149 (200)
                      ..++.
T Consensus       180 ~~~~~  184 (234)
T TIGR02521       180 YLRGQ  184 (234)
T ss_pred             HHcCC
Confidence            76543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.38  E-value=8.1e-12  Score=124.91  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=103.7

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+++.+++|+..++++++++|+ ++.+.++|.++.++|++          ++|+..|+++++++|+++.++.++|.++..
T Consensus       587 ~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~----------deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~  655 (987)
T PRK09782        587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV----------PAAVSDLRAALELEPNNSNYQAALGYALWD  655 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3458999999999999999996 99999999999999888          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      .|           ++++|+.+|++|++++|++.                     .|++++++.|........++.+.
T Consensus       656 ~G-----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        656 SG-----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            88           99999999999999999997                     78899999999988887777554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=1.1e-11  Score=99.78  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      ..+.+++|.+.++-+...||.+++.|++||.++..++++          ++||.+|.+|+.++|+++..++++|.||+..
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------GEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            347899999999999999999999999999999999998          9999999999999999999999999999999


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      |           +.++|.++|+.|+..--++
T Consensus       117 G-----------~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        117 D-----------NVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             C-----------CHHHHHHHHHHHHHHhccC
Confidence            9           9999999999999886333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=1.6e-11  Score=104.21  Aligned_cols=114  Identities=19%  Similarity=0.212  Sum_probs=104.9

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      -+.+..|++.++++++.||++..+|..++.+|..+|+.          +-|-+.|++|+.++|++.+++.|.|--++.+|
T Consensus        48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------DLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------hhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            35788999999999999999999999999999999998          99999999999999999999999999999999


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                                 +|++|..+|++|+. +|.+.                        .|+++|+++|+.|....++.+....
T Consensus       118 -----------~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         118 -----------RPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             -----------ChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence                       99999999999995 56654                        8899999999999999999876653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=4e-12  Score=118.62  Aligned_cols=128  Identities=24%  Similarity=0.364  Sum_probs=111.3

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +-.-+|.-.+|.++..||.++++|-.||.+..+.++-          ..||..|++|+++||++-+++..|+..|+..|.
T Consensus       299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E----------~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE----------QNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            3577888999999999999999999999999987776          899999999999999999999999999988771


Q ss_pred             --------------------c----------------------------------c-----CChHHh-------hcCHHH
Q 028992           92 --------------------L----------------------------------T-----ADLSEA-------KGDFDK  105 (200)
Q Consensus        92 --------------------l----------------------------------~-----~~~~~a-------~~~~d~  105 (200)
                                          +                                  .     ||..-+       .++||+
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence                                0                                  0     222222       238999


Q ss_pred             HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                      |++||+.||..+|+|.                     .|++||++.|.....++|||.-.+.++.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~  513 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA  513 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence            9999999999999997                     9999999999999999999987776665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.9e-12  Score=120.90  Aligned_cols=115  Identities=23%  Similarity=0.305  Sum_probs=94.0

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.++.|++.+++|+.+||+++=+++.+|-=+.....|          +.|..+|+.||.+||.+-.|||.||.+|++++ 
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~----------d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe-  503 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF----------DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE-  503 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH----------HhHHHHHHhhhcCCchhhHHHHhhhhheeccc-
Confidence            3567777777777778887777777777777776666          88888888888888889999999999998877 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                                .++.|.-+|++|+++||.|-                     .|++|+-++|+.|-..++-++.+++-
T Consensus       504 ----------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  504 ----------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             ----------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence                      88888888888888888886                     77788888888888888888777643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.33  E-value=4.6e-11  Score=114.89  Aligned_cols=120  Identities=13%  Similarity=0.041  Sum_probs=95.2

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+++.+++|++.++++++.+|+++.+++++|.++...|++..      -..+|+..|+++++++|+++.++.++|.++..
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE------AKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999888810      00137888888888888888888888888888


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      +|           ++++|+.+|+++++++|++.                     .|+++++.+|..+..+..++..+.
T Consensus       297 ~g-----------~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~  363 (656)
T PRK15174        297 TG-----------QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL  363 (656)
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            88           88888888888888888876                     566677777777766666665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=3.3e-11  Score=105.17  Aligned_cols=103  Identities=22%  Similarity=0.168  Sum_probs=92.3

Q ss_pred             chHHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDP---L-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P---~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ...|.++..+.+.+...|   . .++.++.+|.++..+|++          ++|+..|++|++++|+++++|+++|.++.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR----------ALARNDFSQALALRPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            456788888888886444   3 367799999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE  135 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e  135 (200)
                      ..|           ++++|+.+|+++++++|++.                     .++++++++|+.+.
T Consensus       110 ~~g-----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        110 QAG-----------NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999           99999999999999999997                     67788899999884

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.31  E-value=4e-11  Score=91.22  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992           19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      +.+++++..+|++....+.+|.+++..+++          ++|++.|++++.++|+++.+++++|.++...|        
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------   65 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY----------DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------   65 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------
Confidence            467889999999999999999999999988          99999999999999999999999999999988        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH
Q 028992           99 AKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                         ++++|+.+|+++++.+|++.
T Consensus        66 ---~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552        66 ---EYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             ---HHHHHHHHHHHHHhcCCCCh
Confidence               99999999999999988764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.30  E-value=1e-10  Score=85.97  Aligned_cols=101  Identities=18%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLW   80 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~   80 (200)
                      .+.+.+.+++|++.++.++..+|++   +++++.+|.++...+++          ++|+..|++++..+|++   +.+++
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795        11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHHCCCCCcccHHHH
Confidence            3567789999999999999999987   68999999999999998          99999999999999986   68899


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      .+|.++...|           ++++|+.+|+++++..|++...+.+..
T Consensus        81 ~~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        81 KLGMSLQELG-----------DKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHHhC-----------ChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            9999999988           999999999999999999987776653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.29  E-value=1.1e-11  Score=83.98  Aligned_cols=65  Identities=31%  Similarity=0.513  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      +.+|.+++..|++          ++|+..|+++++.+|+++++++.+|.++..+|           ++++|+.+|+++++
T Consensus         1 ~~~a~~~~~~g~~----------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    1 YALARALYQQGDY----------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHHCTHH----------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence            3678999998888          99999999999999999999999999999999           99999999999999


Q ss_pred             hCCCCH
Q 028992          116 EEPTNE  121 (200)
Q Consensus       116 l~P~~~  121 (200)
                      .+|+++
T Consensus        60 ~~P~~p   65 (65)
T PF13432_consen   60 LDPDNP   65 (65)
T ss_dssp             HSTT-H
T ss_pred             HCcCCC
Confidence            999985

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=7.4e-11  Score=79.59  Aligned_cols=91  Identities=25%  Similarity=0.440  Sum_probs=85.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|.+...+..+|.++...+++          ++|+..|++++.++|.+..+++.+|.++.
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189          10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            34567899999999999999999999999999999999888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..|           ++++|..+|+++++.+|+
T Consensus        80 ~~~-----------~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          80 KLG-----------KYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHH-----------hHHHHHHHHHHHHccCCC
Confidence            988           999999999999999884

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.26  E-value=3.8e-10  Score=89.84  Aligned_cols=92  Identities=25%  Similarity=0.402  Sum_probs=84.0

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTLWSLGNAH   86 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~~~~a~~~LG~a~   86 (200)
                      .+++.+++|++.++++++.+|.+...++++|.++...|++          ++|+..|++++...  |.....++++|.++
T Consensus        76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------EQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4567899999999999999999999999999999999888          99999999999864  56778899999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ...|           ++++|..+|+++++.+|++.
T Consensus       146 ~~~g-----------~~~~A~~~~~~~~~~~~~~~  169 (234)
T TIGR02521       146 LKAG-----------DFDKAEKYLTRALQIDPQRP  169 (234)
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCcCCh
Confidence            9988           99999999999999999886

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.24  E-value=2.6e-10  Score=94.77  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=90.1

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW   80 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~   80 (200)
                      .+-+.+.|++|+..+++++..+|+++   ++++.+|.++...+++          ++|+..|+++++.+|+++.   +++
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY----------AEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCchHHHHH
Confidence            34567899999999999999999987   6889999999999998          9999999999999998887   799


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .+|.++....   .+.....+++++|+..|+++++.+|++....+++
T Consensus       112 ~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       112 LRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            9999998751   1111112389999999999999999997555444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.23  E-value=1.9e-10  Score=111.45  Aligned_cols=112  Identities=11%  Similarity=0.096  Sum_probs=99.2

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+++.+++|...++.+++++|++..++.+++.+|.+++++          ++|+..++++|..+|+++++++.+|.++..
T Consensus        97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~  166 (694)
T PRK15179         97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------EAGRAEIELYFSGGSSSAREILLEAKSWDE  166 (694)
T ss_pred             HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            4677999999999999999999999999999999999999          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      +|           ++++|+.+|++++..+|+++                     .|+++++....-...+.++.
T Consensus       167 ~g-----------~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        167 IG-----------QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             hc-----------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            99           99999999999999999876                     88888887544434444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-10  Score=106.31  Aligned_cols=111  Identities=19%  Similarity=0.223  Sum_probs=90.6

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ...|+|...+++|+++||....+|+..|--+.++.+.          ..||++|++|+++||.|..+||.||.+|-.++ 
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt----------~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-  412 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT----------HAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-  412 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc----------HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-
Confidence            3679999999999999999999999999999999887          99999999999999999999999999998877 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                                -..=|+-|||||+.+.|++.                     +|++|+....-.-.++..|++.
T Consensus       413 ----------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  413 ----------MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             ----------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence                      66667777777777777775                     5666665554444455555543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.22  E-value=3.2e-10  Score=106.97  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=120.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|++.+++++..+|++ ..+.+++.++...|++          ++|+..++++++.+|+++.++..+|.+|.
T Consensus       713 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~~~  781 (899)
T TIGR02917       713 YLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT----------AEAVKTLEAWLKTHPNDAVLRTALAELYL  781 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            456788999999999999999988 7888999999998888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      ..|           ++++|+.+|+++++.+|++.                    .|++++++.|+.+.++..++..+..+
T Consensus       782 ~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       782 AQK-----------DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEK  850 (899)
T ss_pred             HCc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            988           99999999999999999875                    67888899999999999999888755


Q ss_pred             cccCCCCCcch--hhhhcccccchhhhhhhHHHHHHH
Q 028992          148 QTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILAVG  182 (200)
Q Consensus       148 ~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~~~  182 (200)
                      +-. ..+....  .....+.+.++ |...+++....|
T Consensus       851 g~~-~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~g  885 (899)
T TIGR02917       851 GEA-DRALPLLRKAVNIAPEAAAI-RYHLALALLATG  885 (899)
T ss_pred             CCH-HHHHHHHHHHHhhCCCChHH-HHHHHHHHHHcC
Confidence            432 2233334  23333333333 555677666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.22  E-value=2.6e-10  Score=115.69  Aligned_cols=116  Identities=20%  Similarity=0.258  Sum_probs=104.1

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH----------
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT----------   78 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a----------   78 (200)
                      -+.+.+++|+..++++++.+|++++++..+|.++...+++          ++|+..|+++++++|++...          
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR----------ARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            3457899999999999999999999999999999999998          99999999999999987642          


Q ss_pred             ----HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992           79 ----LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA  133 (200)
Q Consensus        79 ----~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~  133 (200)
                          ...+|.++...|           ++++|+.+|+++++++|++.                     .|+++++++|..
T Consensus       350 ~~~~~~~~g~~~~~~g-----------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        350 RYWLLIQQGDAALKAN-----------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             hHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence                234577888877           99999999999999999986                     899999999999


Q ss_pred             hHHHHHHHHHHH
Q 028992          134 PELHMELHKHGI  145 (200)
Q Consensus       134 ~e~~~~l~~~~~  145 (200)
                      +.++..++..+.
T Consensus       419 ~~a~~~L~~l~~  430 (1157)
T PRK11447        419 TNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=4.5e-11  Score=112.98  Aligned_cols=116  Identities=20%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .-.||.|.+.|+.|+..+|.+-.+|+-+|.+|++++++          +.|.-.|++|++|||.+.-...++|.++..+|
T Consensus       468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~----------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL----------EFAEFHFQKAVEINPSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh----------hHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence            34688999999999999999999999999999999999          99999999999999999999999999999988


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------HHHHHH-------HhCCCChHHHHHHHHHHHhc
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQKSL-------EVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------~y~kAl-------e~~~k~~e~~~~l~~~~~~~  147 (200)
                                 +.|+|+.+|++|+.+||.|.              .|.+||       ++.|+..-.|.-+|+++-..
T Consensus       538 -----------~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  538 -----------RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             -----------hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence                       99999999999999999998              444554       57899999999999887643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.21  E-value=3.1e-10  Score=107.02  Aligned_cols=118  Identities=16%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      ...+.+++|++.++...+.+|.++..+..+|.++...|++          ++|+..|++++..+|++ .++.+++.++..
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~  748 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY----------PAAIQAYRKALKRAPSS-QNAIKLHRALLA  748 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence            3456677777777777777777777777777777777666          77777777777777776 666677777777


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .|           ++++|++.++++++.+|++.                     .|+++++..|+.+..+.+++..+..+
T Consensus       749 ~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       749 SG-----------NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            66           77777777777777777765                     66677777777777777777666544


Q ss_pred             c
Q 028992          148 Q  148 (200)
Q Consensus       148 ~  148 (200)
                      +
T Consensus       818 ~  818 (899)
T TIGR02917       818 K  818 (899)
T ss_pred             C
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.19  E-value=5e-10  Score=113.60  Aligned_cols=127  Identities=16%  Similarity=0.182  Sum_probs=108.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+.+.+++|++.++++++++|+++.++..+|.++...|++          ++|+..|+++++++|++..++..++.+|..
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~  431 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY----------AAAERYYQQALRMDPGNTNAVRGLANLYRQ  431 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            3667899999999999999999999999999999999998          999999999999999999999999998754


Q ss_pred             cCc---------ccC----------------------ChHHhhcCHHHHHHHHHHHHHhCCCCH----------------
Q 028992           89 CGF---------LTA----------------------DLSEAKGDFDKASECFQRAVDEEPTNE----------------  121 (200)
Q Consensus        89 ~G~---------l~~----------------------~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------  121 (200)
                      ...         +.+                      +.....+++++|+.+|+++++++|++.                
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            320         000                      112246899999999999999999986                


Q ss_pred             -----HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          122 -----LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       122 -----~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                           .|+++++..|..++.++.++..+.
T Consensus       512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~  540 (1157)
T PRK11447        512 SQADALMRRLAQQKPNDPEQVYAYGLYLS  540 (1157)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                 677888899999999998876543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.18  E-value=4.4e-10  Score=108.18  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=97.6

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+-+.+++|+..++..+..+|+++++++++|.+++..|++          ++|++.|+++++++|++++++..+|.++..
T Consensus        53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~----------~~A~~~l~~~l~~~P~~~~a~~~la~~l~~  122 (656)
T PRK15174         53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP----------DAVLQVVNKLLAVNVCQPEDVLLVASVLLK  122 (656)
T ss_pred             HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4557888999999999999999999999999999888888          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      .|           ++++|+..|++++.++|++.                     .|++.+...|..++++..+.
T Consensus       123 ~g-----------~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~  185 (656)
T PRK15174        123 SK-----------QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL  185 (656)
T ss_pred             cC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            88           99999999999999999986                     46666778888888887664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.1e-10  Score=106.02  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .|++|...++++++++|+++-.+..++.++.+++++          +++...|+++.+.-|+.++++...|.+++.++  
T Consensus       409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq--  476 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ--  476 (606)
T ss_pred             HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH--
Confidence            566666666666666666666666666666666655          66666666666666666666666666666655  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCC------CH----------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPT------NE----------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~------~~----------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                               +|++|++.|.+|+++.|.      +.                      +.+||++++|+--+++..++...
T Consensus       477 ---------qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~  547 (606)
T KOG0547|consen  477 ---------QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE  547 (606)
T ss_pred             ---------hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence                     999999999999999999      43                      88999999999999999999988


Q ss_pred             Hhccc
Q 028992          145 INQQT  149 (200)
Q Consensus       145 ~~~~~  149 (200)
                      ++|+-
T Consensus       548 lQ~~~  552 (606)
T KOG0547|consen  548 LQRGK  552 (606)
T ss_pred             HHHhh
Confidence            86553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.17  E-value=5.1e-10  Score=89.92  Aligned_cols=103  Identities=19%  Similarity=0.185  Sum_probs=85.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      +.+++.|++|...+++++..+|+.   +.+++++|.++..+|++          ++|+..|++++.++|++..++..+|.
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------DKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            456789999999999999987764   57999999999999999          99999999999999999999999999


Q ss_pred             HHHhcCcc---cCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        85 a~~~~G~l---~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      +|...|..   ..+..+|...+++|++++++++..+|++
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99998832   2344455555666777777777777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.15  E-value=5.2e-10  Score=89.29  Aligned_cols=103  Identities=17%  Similarity=0.054  Sum_probs=81.6

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      ..++.|++|+..+++++.+.|+.   +.+++++|.++...|++          ++|+..|++|+.++|...+++.++|.+
T Consensus        46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH----------TKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            35678999999999999987763   45899999999999999          999999999999999999999999999


Q ss_pred             HHhcCc---ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGF---LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~---l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +..+|+   ...+...|...+++|+.+|++++..+|++.
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            995552   122444455555566666666666666543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.15  E-value=1.4e-10  Score=106.71  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=67.1

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCcccCChHHhhcCH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---LWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a---~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      .+|++++.|+|+|.+|..++++          ++|+.+|++||+++|+++++   |+|+|.+|..+|           ++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGry----------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRV----------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EG  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CH
Confidence            5899999999999999999998          99999999999999999965   999999999999           99


Q ss_pred             HHHHHHHHHHHHhC
Q 028992          104 DKASECFQRAVDEE  117 (200)
Q Consensus       104 d~A~~~fqkAl~l~  117 (200)
                      ++|+.++++|+++.
T Consensus       129 dEAla~LrrALels  142 (453)
T PLN03098        129 KKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999983

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=6.9e-10  Score=98.69  Aligned_cols=120  Identities=11%  Similarity=-0.017  Sum_probs=102.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.....+++|+..+.+++.+||.+.++|+..|.++..++ .+          ++++..++++++.||++..+|..+|.++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l----------~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL----------EEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhH----------HHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            455668899999999999999999999999999999886 34          8999999999999999999999999998


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      ..+|         ....++++.+++++++.||.|.                     .|.++|+.++....++...+..+.
T Consensus       117 ~~l~---------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        117 EKLG---------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHcC---------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            8877         1124788999999999999985                     667788889999999998887765


Q ss_pred             h
Q 028992          146 N  146 (200)
Q Consensus       146 ~  146 (200)
                      .
T Consensus       188 ~  188 (320)
T PLN02789        188 R  188 (320)
T ss_pred             h
Confidence            3

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.12  E-value=1.5e-09  Score=95.90  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-----------c------------------ccccH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------D------------------SKKII   58 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-----------~------------------~~~~~   58 (200)
                      +-+.+.|++|++.++++++.+|.+..++..++.++...|+++...           .                  ..+.+
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            455667777777777777777777777777777777766654310           0                  12456


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------  121 (200)
                      ++|+..|+++++++|++..+++.+|.+|...|           ++++|+++|+++++.+|++.                 
T Consensus       197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        197 DAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999988           99999999999999998862                 


Q ss_pred             -----HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          122 -----LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       122 -----~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                           .++++++..|+.+ .+..++..+..++.
T Consensus       266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~  297 (389)
T PRK11788        266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEG  297 (389)
T ss_pred             HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCC
Confidence                 5666777888764 44777777765543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.10  E-value=2e-10  Score=81.83  Aligned_cols=80  Identities=20%  Similarity=0.305  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           12 LLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +.|+.|+..+++.++.+|.  +...++++|.+++.+|++          ++|+..+++ ++++|.+.+.++.+|.++..+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l   71 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------EEAIELLQK-LKLDPSNPDIHYLLARCLLKL   71 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999995  577888899999999999          999999999 999999999999999999999


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      |           ++++|+++|++|
T Consensus        72 ~-----------~y~eAi~~l~~~   84 (84)
T PF12895_consen   72 G-----------KYEEAIKALEKA   84 (84)
T ss_dssp             T------------HHHHHHHHHHH
T ss_pred             C-----------CHHHHHHHHhcC
Confidence            9           999999999986

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.09  E-value=3.3e-09  Score=103.57  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +.+.+++|++.++++++++|++++++..+|.++...+++          ++|+..++++++.+|+++. +..+|.++...
T Consensus        61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~----------~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~  129 (765)
T PRK10049         61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY----------DEALVKAKQLVSGAPDKAN-LLALAYVYKRA  129 (765)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHC
Confidence            344555555555555555555555555555555555555          5555555555555555555 55555555555


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |           ++++|+.+|+++++++|++.
T Consensus       130 g-----------~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049        130 G-----------RHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             C-----------CHHHHHHHHHHHHHhCCCCH
Confidence            5           55555555555555555554

>PLN02789 farnesyltranstransferase

Probab=99.08  E-value=3.5e-09  Score=94.19  Aligned_cols=119  Identities=12%  Similarity=0.024  Sum_probs=103.2

Q ss_pred             HHhc-hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~-~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .+++ .+++++..+++++..||.+.++|+..+.++..+++.        .++++++++++++++||++..+|..+|.++.
T Consensus        82 ~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~--------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789         82 EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD--------AANKELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch--------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4455 579999999999999999999999999999877652        1267899999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCCChHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k~~e~~~~  139 (200)
                      .+|           ++++|++++.++|+.||.|.                            .+.++++++|+...++..
T Consensus       154 ~l~-----------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y  222 (320)
T PLN02789        154 TLG-----------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY  222 (320)
T ss_pred             Hhh-----------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence            988           99999999999999999996                            134778889999999988


Q ss_pred             HHHHHHh
Q 028992          140 LHKHGIN  146 (200)
Q Consensus       140 l~~~~~~  146 (200)
                      ++..+..
T Consensus       223 l~~ll~~  229 (320)
T PLN02789        223 LRGLFKD  229 (320)
T ss_pred             HHHHHhc
Confidence            8888765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.07  E-value=9.2e-10  Score=93.64  Aligned_cols=96  Identities=25%  Similarity=0.325  Sum_probs=89.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a   85 (200)
                      +.+++.-+.|.+.|++|++++|++.++++|.|.-|+.+|++          ++|-..|++|+..  -|.-++++-|+|.|
T Consensus        79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C  148 (250)
T COG3063          79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLC  148 (250)
T ss_pred             HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence            57889999999999999999999999999999999999999          9999999999964  56677899999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      -...|           +++.|.++|+|+++++|+++.-.
T Consensus       149 al~~g-----------q~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         149 ALKAG-----------QFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HhhcC-----------CchhHHHHHHHHHHhCcCCChHH
Confidence            99999           99999999999999999998433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=9.2e-10  Score=101.83  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      ..-.|-+.+.++++++|.+...++.+|.+|....+.          ++-...|.+|..+||+++++|+..|.+++.++  
T Consensus       341 ~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~----------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~--  408 (606)
T KOG0547|consen  341 DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS----------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ--  408 (606)
T ss_pred             CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc----------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH--
Confidence            445778889999999999999999999999998887          89999999999999999999999999999988  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                               +|++|+.-|++|+.++|+|.                     .|+.+....|..||.|.-.+.++..||-
T Consensus       409 ---------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  409 ---------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ  477 (606)
T ss_pred             ---------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence                     99999999999999999997                     5556667889999999999999987774

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.05  E-value=6.1e-10  Score=95.39  Aligned_cols=120  Identities=19%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKD--PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~--P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      +.+.+.++++.+..+.+....  |.++..+..+|.++...|+.          ++|+..|++|++++|++++++..++.+
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP----------DKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            456666777777777755444  66777888888888877776          888888888888888888888888877


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      +...|           +++++...+++..+..|+++                     .|++++..+|++|..+..++.++
T Consensus       190 li~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  190 LIDMG-----------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HCTTC-----------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHCC-----------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            77777           77776666666666655554                     66777777888888888888877


Q ss_pred             Hhcc
Q 028992          145 INQQ  148 (200)
Q Consensus       145 ~~~~  148 (200)
                      ...+
T Consensus       259 ~~~g  262 (280)
T PF13429_consen  259 EQAG  262 (280)
T ss_dssp             T---
T ss_pred             cccc
Confidence            6433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.05  E-value=5.4e-09  Score=92.28  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=93.5

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-HYTLWSLGNAHTS   88 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-~~a~~~LG~a~~~   88 (200)
                      +.+.+++|++.++++++.+|++.+++..+|.++...|++          ++|+..|+++++.+|.+ ..++..++.+|..
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999988          99999999999999987 4667789999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      .|           ++++|+.+++++++.+|++.                    .++++++..|+.+.++.-+.
T Consensus       262 ~g-----------~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~  323 (389)
T PRK11788        262 LG-----------DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD  323 (389)
T ss_pred             cC-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            88           99999999999999999876                    45555666666665543333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.04  E-value=3.2e-09  Score=90.97  Aligned_cols=92  Identities=18%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+.+..++|++.++++++++|+|++++..++.+++..|++          +++.+.++...+..|+++..+..+|.+|..
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  226 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQ  226 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence            4566777777777777777777777777777777666665          666666666666667777777777777777


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +|           ++++|+.+|++++..+|+++
T Consensus       227 lg-----------~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  227 LG-----------RYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HT------------HHHHHHHHHHHHHHSTT-H
T ss_pred             cc-----------cccccccccccccccccccc
Confidence            66           77777777777777777776

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.04  E-value=1.7e-09  Score=87.20  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992           20 TAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        20 ~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      ...-...++ +++.+.++.+|.-+...|++          ++|+..|+-+..+||.+++.|++||.++..+|        
T Consensus        22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l----------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------   83 (157)
T PRK15363         22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEF----------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------   83 (157)
T ss_pred             cHHHHHCCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------
Confidence            344455778 89999999999999999998          99999999999999999999999999999988        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH
Q 028992           99 AKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                         +|++|+.+|.+|+.++|+++
T Consensus        84 ---~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         84 ---HWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             ---hHHHHHHHHHHHHhcCCCCc
Confidence               99999999999999999875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=1.6e-09  Score=104.12  Aligned_cols=97  Identities=30%  Similarity=0.369  Sum_probs=88.4

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      ...+..+.+++|.+.|..++.+||+++.+.+.+|.+|++.|+.        .+-++.+.+..|+++||.+|++|+.||.+
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~--------~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP--------RLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc--------chHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999975        12455559999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +..+|           ++++|.+||+-|+++++.++
T Consensus       764 ~k~~G-----------d~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  764 FKKLG-----------DSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHcc-----------chHHHHHHHHHHHhhccCCC
Confidence            99999           99999999999999999876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=4.9e-10  Score=104.80  Aligned_cols=89  Identities=21%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .+.|+.|+.+++.|+..+|+|...|++||..|..-.+.          +|||+.|++||+|-|....++||||..++.+|
T Consensus       443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence            35789999999999999999999999999999887777          99999999999999999999999999999999


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                                 .|++|+++|-.||.+.+.+
T Consensus       513 -----------~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  513 -----------AYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             -----------hHHHHHHHHHHHHHhhhcc
Confidence                       9999999999999998874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=6e-09  Score=89.88  Aligned_cols=113  Identities=21%  Similarity=0.187  Sum_probs=102.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +|-.+.+++|.+.|+..++-||+|.-++-+.=.++..+|+-          .+||..+.+-|+.-|.|+++|+.|+.+|.
T Consensus        96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~----------l~aIk~ln~YL~~F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN----------LEAIKELNEYLDKFMNDQEAWHELAEIYL  165 (289)
T ss_pred             HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            56677899999999999999999999999888888888888          89999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      +.|           +|++|.-|+++.+-.+|.++                        .|.++|+++|+.....++|-
T Consensus       166 ~~~-----------~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  166 SEG-----------DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             hHh-----------HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence            988           99999999999999999998                        77888888886666665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.98  E-value=6.4e-09  Score=93.41  Aligned_cols=89  Identities=15%  Similarity=0.227  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                      +...|..++..+++          ++|++.|++||+++|+++.+|+++|.+|..+|           ++++|+.++++|+
T Consensus         5 l~~~a~~a~~~~~~----------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al   63 (356)
T PLN03088          5 LEDKAKEAFVDDDF----------ALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAI   63 (356)
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence            55678888888888          99999999999999999999999999999999           9999999999999


Q ss_pred             HhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992          115 DEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus       115 ~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      +++|++.                     .|+++++++|+.++++..+++.-
T Consensus        64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999987                     88899999999999999998763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.98  E-value=1.1e-08  Score=88.73  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLGNA   85 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~LG~a   85 (200)
                      +.|++|+..++..+..+|++   +.+++.+|.+++..+++          ++|+..|+++++..|+   .+++++.+|.+
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A~~~f~~vv~~yP~s~~~~dAl~klg~~  226 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDAAYYFASVVKNYPKSPKAADAMFKVGVI  226 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence            58999999999999999998   68999999999999888          9999999999988887   58999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      +..+|           ++++|+.+|++.++..|++...++|.+
T Consensus       227 ~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~  258 (263)
T PRK10803        227 MQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQK  258 (263)
T ss_pred             HHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            99988           999999999999999999997777654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=1.2e-08  Score=99.04  Aligned_cols=106  Identities=5%  Similarity=-0.067  Sum_probs=98.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhc
Q 028992           22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKG  101 (200)
Q Consensus        22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~  101 (200)
                      .......|++++++.+||.+...+|++          +||...++.+++++|++..++.+++.++..++           
T Consensus        76 ~~~~~~~~~~~~~~~~La~i~~~~g~~----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-----------  134 (694)
T PRK15179         76 LDYVRRYPHTELFQVLVARALEAAHRS----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-----------  134 (694)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-----------
Confidence            333456799999999999999999999          99999999999999999999999999999988           


Q ss_pred             CHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          102 DFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       102 ~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      ++|+|+..++++++.+|++.                     .|++++.-+|+.++++.+++..+...+
T Consensus       135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            99999999999999999997                     899999989999999999999987444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=5.1e-09  Score=91.80  Aligned_cols=78  Identities=22%  Similarity=0.350  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------  121 (200)
Q Consensus        57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------  121 (200)
                      .|++|+.+|.+||+++|+++-.|.|.+-+|.++|           .|+.|++-.+.||.+||.+.               
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            4699999999999999999999999999999999           99999999999999999996               


Q ss_pred             ------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          122 ------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       122 ------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                            .|+|+|+++|.......+|..+-.
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~  194 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQ  194 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence                  899999999999998888875543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1e-08  Score=95.42  Aligned_cols=94  Identities=22%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      |+=+.+.|.+|++.|.++++.+|+|+..+.|.+.||+.++++          .+|++..+.++++||+..-+|.-=|.++
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAAL  436 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            344455566666666666666666666666666666666666          6666666666666666666666666666


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..+.           +|++|+++|+++++.||++.
T Consensus       437 ~~mk-----------~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  437 RAMK-----------EYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHH-----------HHHHHHHHHHHHHhcCchhH
Confidence            5544           66666666666666666665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.96  E-value=1.9e-09  Score=73.08  Aligned_cols=59  Identities=31%  Similarity=0.453  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      +++|++.|++++..+|++.++++.+|.+|...|           ++++|..++++++..+|+++.|...+
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            499999999999999999999999999999999           99999999999999999998777655

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.3e-08  Score=93.73  Aligned_cols=95  Identities=17%  Similarity=0.226  Sum_probs=88.3

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      -||=-|+.-..|++.|++|+++||.|-.+|+.+|.+|--+..+          .-|+-.|++|+++.|+|+..|..||.|
T Consensus       372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh----------~YaLyYfqkA~~~kPnDsRlw~aLG~C  441 (559)
T KOG1155|consen  372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH----------FYALYYFQKALELKPNDSRLWVALGEC  441 (559)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch----------HHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            4566678889999999999999999999999999999988877          999999999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |.+++           +.++|++||++|+...-.+.
T Consensus       442 Y~kl~-----------~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  442 YEKLN-----------RLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHHhc-----------cHHHHHHHHHHHHhccccch
Confidence            99998           99999999999999987754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.94  E-value=5.6e-09  Score=71.75  Aligned_cols=69  Identities=20%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        39 G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      ..+++..+++          ++|+.+++++++++|+++..++.+|.+|..+|           +|++|+.+|+++++.+|
T Consensus         2 ~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDY----------EEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCH----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCC
Confidence            4566776777          99999999999999999999999999999999           99999999999999999


Q ss_pred             CCHHHHHHHH
Q 028992          119 TNELYQKSLE  128 (200)
Q Consensus       119 ~~~~y~kAle  128 (200)
                      ++........
T Consensus        61 ~~~~~~~~~a   70 (73)
T PF13371_consen   61 DDPDARALRA   70 (73)
T ss_pred             CcHHHHHHHH
Confidence            9886555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=1.4e-08  Score=99.33  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      ..+.+++|++.++++...+|.++..+..+|.++...+++          ++|+..|+++++++|++++++..+|.++...
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW----------QNSLTLWQKALSLEPQNDDYQRGLILTLADA   96 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            457899999999999999999999999999999999999          9999999999999999999999999999998


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      |           ++++|+.+++++++.+|++.                    .|++++++.|+.++++..++..+.
T Consensus        97 g-----------~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049         97 G-----------QYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             C-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8           99999999999999999985                    888999999999999999988775

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.94  E-value=1.2e-08  Score=87.80  Aligned_cols=97  Identities=21%  Similarity=0.197  Sum_probs=86.8

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      |.+.|+.|...+.++..++|+|.+.|.-+|.+|-++|++          ++|...|.+|+++.|+++.+..|||..|...
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            567899999999999999999999999999999999999          9999999999999999999999999999998


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      |           ++++|..++.++...-+.+...+..|
T Consensus       182 g-----------d~~~A~~lll~a~l~~~ad~~v~~NL  208 (257)
T COG5010         182 G-----------DLEDAETLLLPAYLSPAADSRVRQNL  208 (257)
T ss_pred             C-----------CHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            8           99999999999988888776544444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.4e-09  Score=96.34  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=114.8

Q ss_pred             hhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         5 ~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+..-++...|++.+..+..--.+|.-++---.-|+.++..++|          .+|+..|.+||+.||+++..|-|++.
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy----------~~Av~~YteAIkr~P~Da~lYsNRAa  400 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY----------PEAVKHYTEAIKRDPEDARLYSNRAA  400 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            45778999999999999999999999999888999999999998          99999999999999999999999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      ||+.+|           ++..|+...+++++++|++.                     .|.++++.+|+.-++--.+.+.
T Consensus       401 c~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc  469 (539)
T KOG0548|consen  401 CYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC  469 (539)
T ss_pred             HHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            999999           99999999999999999997                     8999999999999999888888


Q ss_pred             HHhc
Q 028992          144 GINQ  147 (200)
Q Consensus       144 ~~~~  147 (200)
                      +..|
T Consensus       470 ~~a~  473 (539)
T KOG0548|consen  470 VEAQ  473 (539)
T ss_pred             HHHh
Confidence            7765

>PRK15331 chaperone protein SicA; Provisional

Probab=98.93  E-value=1.5e-08  Score=82.35  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=89.4

Q ss_pred             CCChhHHHH----------hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            2 EFSQSDFDR----------LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         2 ~~~~~~~~~----------l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +++++++|.          .+.+++|...++-....||.+++.+..||.++..++++          ++|+..|..|..+
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~Ai~~Y~~A~~l  100 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKACDLYAVAFTL  100 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHc
Confidence            456666654          46899999999999999999999999999999998888          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++++|...+..|.||..+|           +.++|..||+-+++ +|.+.
T Consensus       101 ~~~dp~p~f~agqC~l~l~-----------~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLMR-----------KAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             ccCCCCccchHHHHHHHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999999           99999999999999 56655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.3e-08  Score=93.74  Aligned_cols=111  Identities=23%  Similarity=0.282  Sum_probs=89.3

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc---------------c----------------c
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS---------------D----------------S   54 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~---------------~----------------~   54 (200)
                      -++-|+..++-|-+.+..|+.+.|+|+-++.-+|.+.+..+.|..+.               +                -
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK  467 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence            46778888889999999999999999988877777766544433210               0                0


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .+++++||..|++||.+.|+++++|-.+|.+|..+|           ++++|+++|-+|+.++|+|...+.-|
T Consensus       468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            145699999999999999999999999999999988           99999999999999999997444333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.87  E-value=6.7e-09  Score=70.12  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~   76 (200)
                      +-+.+.|++|++.++++++.+|++++++..+|.++..+|++          ++|+..|+++++++|++|
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-H
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCC
Confidence            45678999999999999999999999999999999999998          999999999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.86  E-value=8.3e-09  Score=70.25  Aligned_cols=57  Identities=30%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCC
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDP   73 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP   73 (200)
                      .+-+++.|++|++.++++++++|+++.+++++|.++..++ ++          ++|+..|++|+++||
T Consensus        12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHcCc
Confidence            4567889999999999999999999999999999999998 67          999999999999999

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.85  E-value=2.1e-08  Score=92.57  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=84.7

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      ...-.+|++.+++++++||+|+.+++.+|.++...+++          +.|+..|++|+.++|+.+++|+.+|.++.-.|
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G  386 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYYRALVHFHNE  386 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence            34467899999999999999999999999999999998          99999999999999999999999999999988


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                 +.++|.+++++|++++|.-.
T Consensus       387 -----------~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        387 -----------KIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             -----------CHHHHHHHHHHHhccCchhh
Confidence                       99999999999999999754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4e-08  Score=86.07  Aligned_cols=90  Identities=21%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      .+..+..++..+..||+|++-|..||.+|..++++          .+|...|.+|++|.|++++.+-.+|.+++.++   
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----------~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a---  204 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----------SDALLAYRNALRLAGDNPEILLGLAEALYYQA---  204 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence            34445566666777777777777777777777777          67777777777777777777777777665433   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                           ......++...|++|+.+||+|.
T Consensus       205 -----~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         205 -----GQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             -----CCcccHHHHHHHHHHHhcCCccH
Confidence                 12245566667777777777665

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=9.5e-08  Score=83.75  Aligned_cols=101  Identities=20%  Similarity=0.169  Sum_probs=91.1

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      =++..|..|...|.+++.+.|++++.+..+|.+|...+.-       .+..++...|++||++||++..+++.||..++.
T Consensus       167 m~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         167 MALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4677999999999999999999999999999999987653       455899999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .|           +|.+|+..+++-++..|.+..-+-.+
T Consensus       240 ~g-----------~~~~A~~~Wq~lL~~lp~~~~rr~~i  267 (287)
T COG4235         240 QG-----------DYAEAAAAWQMLLDLLPADDPRRSLI  267 (287)
T ss_pred             cc-----------cHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            99           99999999999999999887544444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.83  E-value=3.7e-08  Score=66.12  Aligned_cols=67  Identities=27%  Similarity=0.531  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      +++++|.++...+++          ++|+..|+++++++|+++.+++.+|.++...|           ++++|+++|+++
T Consensus         2 ~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYKLGDY----------DEALEYYEKALELDPDNADAYYNLAAAYYKLG-----------KYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            578899999998888          99999999999999999999999999999988           999999999999


Q ss_pred             HHhCCCCH
Q 028992          114 VDEEPTNE  121 (200)
Q Consensus       114 l~l~P~~~  121 (200)
                      ++..|.+.
T Consensus        61 ~~~~~~~~   68 (100)
T cd00189          61 LELDPDNA   68 (100)
T ss_pred             HhCCCcch
Confidence            99988775

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.82  E-value=8e-08  Score=76.64  Aligned_cols=87  Identities=22%  Similarity=0.263  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHh
Q 028992           14 SEHNRKTAEANYAKDPLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTS   88 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d--~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~   88 (200)
                      |..+...+...+..++.+  +..++++|.++...+++          ++|+..|++|+.+.|+.   +.++.++|.+|..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~   84 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY----------AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS   84 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence            566666776666777777  67789999999999998          99999999999998774   4589999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .|           ++++|+.+|++|+.++|.+.
T Consensus        85 ~g-----------~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         85 NG-----------EHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             cC-----------CHHHHHHHHHHHHHhCcCcH
Confidence            99           99999999999999988875

>PRK11906 transcriptional regulator; Provisional

Probab=98.81  E-value=5.2e-08  Score=90.00  Aligned_cols=96  Identities=10%  Similarity=0.011  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           14 SEHNRKTAEANY---AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        14 fe~A~~~~e~a~---~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .+.|+..+.+++   +++|+++.++..++.++.......... ......+|++.-++|+++||.|+.+++.+|.++...|
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            467888899999   999999999999999988764433333 5566799999999999999999999999999999988


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                 +++.|+..|++|+.++|+++
T Consensus       353 -----------~~~~a~~~f~rA~~L~Pn~A  372 (458)
T PRK11906        353 -----------QAKVSHILFEQAKIHSTDIA  372 (458)
T ss_pred             -----------chhhHHHHHHHHhhcCCccH
Confidence                       99999999999999999998

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.79  E-value=9.8e-08  Score=69.93  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      +++++.+|..+...+++          ++|+..|++++..+|++   +.+++.+|.++...|           ++++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~   60 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDY----------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-----------KYADAAK   60 (119)
T ss_pred             cHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-----------cHHHHHH
Confidence            57889999999999998          99999999999999987   579999999999988           9999999


Q ss_pred             HHHHHHHhCCCCH
Q 028992          109 CFQRAVDEEPTNE  121 (200)
Q Consensus       109 ~fqkAl~l~P~~~  121 (200)
                      +|++++..+|++.
T Consensus        61 ~~~~~~~~~p~~~   73 (119)
T TIGR02795        61 AFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHCCCCC
Confidence            9999999999863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.7e-08  Score=88.67  Aligned_cols=117  Identities=22%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCC----CC-----------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDP----LD-----------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P----~d-----------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      .+=|.+.|+.|...|++++..=+    .+           ..++.|++.+++.+.++          .+|+.+.+++|++
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~----------~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY----------KEAIESCNKVLEL  286 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH----------HHHHHHHHHHHhc
Confidence            34456788899999888775322    11           22679999999999999          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH--------HhCCCChHHHHHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL--------EVSTKAPELHMELHKH  143 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl--------e~~~k~~e~~~~l~~~  143 (200)
                      +|+|.-++|-.|.||..+|           +|+.|+..|++|++++|+|-..+.-|        +.+.+.-+.|.++-..
T Consensus       287 ~~~N~KALyRrG~A~l~~~-----------e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALG-----------EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             CCCchhHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999           99999999999999999998444444        3444445555444433


Q ss_pred             H
Q 028992          144 G  144 (200)
Q Consensus       144 ~  144 (200)
                      .
T Consensus       356 ~  356 (397)
T KOG0543|consen  356 L  356 (397)
T ss_pred             c
Confidence            3

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.78  E-value=7.1e-08  Score=80.09  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH-----
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL-----   79 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~---~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~-----   79 (200)
                      +.+++.+++|+..++++++.+|+++.   +++.+|.++.....  ......+..++|++.|+++++.+|++..++     
T Consensus        80 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302        80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            35678999999999999999999887   79999999987510  011122345999999999999999997653     


Q ss_pred             ------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           80 ------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        80 ------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                                  +.+|.+|...|           ++++|+..|+++++..|++          |..++++..++..+...
T Consensus       158 ~~~~~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~----------~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       158 MDYLRNRLAGKELYVARFYLKRG-----------AYVAAINRFETVVENYPDT----------PATEEALARLVEAYLKL  216 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHCCCC----------cchHHHHHHHHHHHHHc
Confidence                        35677788877           9999999999999999985          56678888888888754


Q ss_pred             c
Q 028992          148 Q  148 (200)
Q Consensus       148 ~  148 (200)
                      +
T Consensus       217 g  217 (235)
T TIGR03302       217 G  217 (235)
T ss_pred             C
Confidence            4

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.78  E-value=2.4e-08  Score=67.61  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+.|++|++.+++++..+|++.++++.+|.+++..|++          ++|...+++++..+|+++.++..++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY----------DEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H----------HHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            56899999999999999999999999999999999999          99999999999999999888777664

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.77  E-value=1.3e-07  Score=89.08  Aligned_cols=93  Identities=12%  Similarity=0.009  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a~~~~G   90 (200)
                      .+++|+..++++++++|+++.++..++.++.....+..  .....+..+.+..++++.+  +|.++.+|..+|..+...|
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g  434 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG  434 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence            37799999999999999999999999888866544321  1112233444444444432  4444455555555544444


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                                 ++++|..+|++|++++|
T Consensus       435 -----------~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        435 -----------KTDEAYQAINKAIDLEM  451 (517)
T ss_pred             -----------CHHHHHHHHHHHHHcCC
Confidence                       55555555555555555

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.74  E-value=1.2e-07  Score=76.09  Aligned_cols=74  Identities=28%  Similarity=0.435  Sum_probs=65.8

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      .+|..+.+++++|..+...|++          ++|+.+|+++++++|+.   ..++.++|.++...|           ++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~   88 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEY----------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EH   88 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CH
Confidence            3455777899999999999998          99999999999998875   468999999999999           99


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 028992          104 DKASECFQRAVDEEPTNE  121 (200)
Q Consensus       104 d~A~~~fqkAl~l~P~~~  121 (200)
                      ++|+.+|+++++.+|++.
T Consensus        89 ~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         89 DKALEYYHQALELNPKQP  106 (172)
T ss_pred             HHHHHHHHHHHHhCcccH
Confidence            999999999999988765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.73  E-value=1.2e-08  Score=71.25  Aligned_cols=67  Identities=31%  Similarity=0.479  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHhcCcccCChHHhhc
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI----DPAK---HYTLWSLGNAHTSCGFLTADLSEAKG  101 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l----dP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~  101 (200)
                      |+-+.++.++|.++..+|++          ++|+..|++|+.+    .+++   ..++.++|.+|..+|           
T Consensus         2 ~~~a~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-----------   60 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRY----------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-----------   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------
Confidence            55578899999999999999          9999999999966    2232   457889999999999           


Q ss_pred             CHHHHHHHHHHHHHh
Q 028992          102 DFDKASECFQRAVDE  116 (200)
Q Consensus       102 ~~d~A~~~fqkAl~l  116 (200)
                      ++++|+++|++|+++
T Consensus        61 ~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   61 DYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999999986

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.73  E-value=7.9e-08  Score=84.00  Aligned_cols=90  Identities=16%  Similarity=0.160  Sum_probs=81.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----HHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLG   83 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----~a~~~LG   83 (200)
                      +...+.+++|++.++++++++|+++.++..+|.++.+.|++          ++|+..+++++..+|.++    ..+|.+|
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            35677899999999999999999999999999999999998          999999999999988654    3567899


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      .++...|           ++++|+.+|++++..+|
T Consensus       194 ~~~~~~G-----------~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         194 LFYLERG-----------DYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHCC-----------CHHHHHHHHHHHhcccc
Confidence            9999999           99999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.73  E-value=1.7e-07  Score=92.67  Aligned_cols=126  Identities=12%  Similarity=0.107  Sum_probs=90.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF   65 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~l   65 (200)
                      |.+.++.|+..++++++.+|+++-...-|..++...|++..+..                        ..+.+++|++.|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34566677777777777777764332255555544444432110                        114458999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHH
Q 028992           66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQK  125 (200)
Q Consensus        66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~k  125 (200)
                      +++++++|++++++..|+.+|...+           +.++|++.+++++..+|++.                    .|++
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~~~~-----------q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQADAG-----------RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHhhcC-----------CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9999999999998888888888877           88888888888888888875                    6777


Q ss_pred             HHHhCCCChHHHHHHHHHHHh
Q 028992          126 SLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus       126 Ale~~~k~~e~~~~l~~~~~~  146 (200)
                      +++..|+.++++.++...+..
T Consensus       195 ll~~~P~n~e~~~~~~~~l~~  215 (822)
T PRK14574        195 AVRLAPTSEEVLKNHLEILQR  215 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHH
Confidence            788888888888888876653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=2.1e-07  Score=83.24  Aligned_cols=142  Identities=18%  Similarity=0.238  Sum_probs=118.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +=||+++-+|.+.++.+++..|. ++.+..++.+|.+..|.          +.|+..+.+.+..-|.+...+...+.+|.
T Consensus       233 ylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP----------~~AL~~~~~gld~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQP----------ERALLVIGEGLDSFPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccH----------HHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence            45889999999999999988875 78888999999999888          99999999999999999998888888998


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH-
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI-  145 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~-  145 (200)
                      .++           ++++|+++|+++++++|.|-                     .||+-|+|--..||++.||+.-.+ 
T Consensus       302 am~-----------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y  370 (478)
T KOG1129|consen  302 AME-----------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY  370 (478)
T ss_pred             HHH-----------hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence            877           99999999999999999995                     899999999999999999998665 


Q ss_pred             hccccCCCCCcch----hhhhc-ccccchhhhh
Q 028992          146 NQQTLGGGSSASS----AQSSK-KKSSDLKYDI  173 (200)
Q Consensus       146 ~~~~~~~~~~~~~----~~~~~-~~~~~~~y~~  173 (200)
                      .||--.  .-++.    .+..+ -..+|+||.+
T Consensus       371 aqQ~D~--~L~sf~RAlstat~~~~aaDvWYNl  401 (478)
T KOG1129|consen  371 AQQIDL--VLPSFQRALSTATQPGQAADVWYNL  401 (478)
T ss_pred             hcchhh--hHHHHHHHHhhccCcchhhhhhhcc
Confidence            455311  12222    22332 3678998875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.68  E-value=3.9e-07  Score=78.59  Aligned_cols=74  Identities=26%  Similarity=0.401  Sum_probs=57.2

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      .+|.|.+.+.-+|..++..|+|          .+|+..|++|..++|++.++|..+|.+|...|           ++++|
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~----------~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-----------r~~~A  153 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNF----------GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-----------RFDEA  153 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcch----------HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-----------ChhHH
Confidence            3444444444455555555555          89999999999999999999999999999988           99999


Q ss_pred             HHHHHHHHHhCCCCH
Q 028992          107 SECFQRAVDEEPTNE  121 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~  121 (200)
                      -.-|.+|+++.|+++
T Consensus       154 r~ay~qAl~L~~~~p  168 (257)
T COG5010         154 RRAYRQALELAPNEP  168 (257)
T ss_pred             HHHHHHHHHhccCCc
Confidence            888888888888876

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.67  E-value=1.8e-07  Score=88.24  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           14 SEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        14 fe~A~~~~e~a~~~--~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      .+.+.+.+++++.+  +|.++.++..+|......+++          ++|+..|++|+.++| +..+|..+|.++...| 
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G-  467 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELKG-  467 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC-
Confidence            45666777776664  888999999999998888888          999999999999999 5899999999999999 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                                ++++|+++|++|++++|.++.|-
T Consensus       468 ----------~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        468 ----------DNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             ----------CHHHHHHHHHHHHhcCCCCchHH
Confidence                      99999999999999999988543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.4e-07  Score=64.70  Aligned_cols=64  Identities=20%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG   83 (200)
                      +...|++|++.+++++.++|+++..+...|.++..+|++          ++|++.|+++++++|+++++.....
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            456899999999999999999999999999999999999          9999999999999999999876554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=8.7e-07  Score=68.48  Aligned_cols=100  Identities=23%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWS   81 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~   81 (200)
                      ++.++..++|+..|+++++..+.+   ..++..+|.+|..+|++          ++|+..|++++.-.|+   +..+...
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHH
Confidence            577899999999999999986665   56889999999999999          9999999999999898   8888888


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS  130 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~  130 (200)
                      ++.++...|           +.++|+..+-.++..  ....|++++...
T Consensus        81 ~Al~L~~~g-----------r~~eAl~~~l~~la~--~~~~y~ra~~~y  116 (120)
T PF12688_consen   81 LALALYNLG-----------RPKEALEWLLEALAE--TLPRYRRAIRFY  116 (120)
T ss_pred             HHHHHHHCC-----------CHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            999999999           999999999998874  444999998754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.61  E-value=7.4e-07  Score=77.84  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc----------------------------ccccccHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV----------------------------SDSKKIINEAI   62 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~----------------------------~~~~~~~~eAi   62 (200)
                      .+.+++|++.++++++.+|+|..++.. +..+..++.+...                            ....+.+++|+
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  134 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE  134 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            357888999999999999999887765 5555555443210                            01123467788


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        63 ~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..++++++++|+++.++..+|.+|...|           ++++|+.+++++++..|.
T Consensus       135 ~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         135 EAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCC
Confidence            8888888888888777777888887777           888888888888777664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1e-06  Score=82.92  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=109.9

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF   65 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~~l   65 (200)
                      -.+.+.+||+.+.++-.+||..+.+|...|.++...+.+.|...                        ..+.++-|...|
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            34678999999999999999999999999999988877765321                        124578899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC----CCC-------H-------------
Q 028992           66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE----PTN-------E-------------  121 (200)
Q Consensus        66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~----P~~-------~-------------  121 (200)
                      .+|+.|.|++|-++..+|.+.+..+           .|.+|..+|+.++..-    ++.       .             
T Consensus       404 ~~A~ai~P~Dplv~~Elgvvay~~~-----------~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  404 KQALAIAPSDPLVLHELGVVAYTYE-----------EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             HHHHhcCCCcchhhhhhhheeehHh-----------hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence            9999999999999999999888755           9999999999999321    111       0             


Q ss_pred             ----HHHHHHHhCCCChHHHHHHHHHHHhccccCCCCCcch
Q 028992          122 ----LYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS  158 (200)
Q Consensus       122 ----~y~kAle~~~k~~e~~~~l~~~~~~~~~~~~~~~~~~  158 (200)
                          .|+++|.+.|+++..|..+|-.+.-++.. ..|+.+.
T Consensus       473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl-d~Aid~f  512 (611)
T KOG1173|consen  473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNL-DKAIDHF  512 (611)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh-HHHHHHH
Confidence                88999999999999999999888766654 2244444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=1.7e-06  Score=74.95  Aligned_cols=89  Identities=21%  Similarity=0.243  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      -+|++..-.-++.-++|.++|.-++.+|+..++|          +.|+-|||+.+-++|.+|-.+--||.+++.+|    
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g----  202 (289)
T KOG3060|consen  137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG----  202 (289)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh----
Confidence            4788888899999999999999999999999999          99999999999999999999999999987766    


Q ss_pred             ChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           95 DLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                          ..++++-|.+||.+|++++|.+.
T Consensus       203 ----g~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  203 ----GAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             ----hHHHHHHHHHHHHHHHHhChHhH
Confidence                26689999999999999999665

>TIGR00540 hemY_coli hemY protein

Probab=98.50  E-value=4.6e-06  Score=75.78  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc-----------------------ccH-----HHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK-----------------------KII-----NEAI   62 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~-----------------------~~~-----~eAi   62 (200)
                      .+.+++|+..+++..+.+|+++.++..++.++...++++...+..                       +.+     ++++
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~  245 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI  245 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            368999999999999999999999999999999998876321100                       112     2223


Q ss_pred             HHHHHHHHhCC----CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhCCCC
Q 028992           63 SKFEEALVIDP----AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKA  133 (200)
Q Consensus        63 ~~le~AL~ldP----~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~~k~  133 (200)
                      +.++++.+..|    +++..+.+++..+...|           ++++|.+..+++++..|++.     .++....+.++.
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~  314 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED  314 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence            47777888888    58999999999999988           99999999999999999998     555555555544


Q ss_pred             h
Q 028992          134 P  134 (200)
Q Consensus       134 ~  134 (200)
                      +
T Consensus       315 ~  315 (409)
T TIGR00540       315 N  315 (409)
T ss_pred             h
Confidence            4

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.50  E-value=1.7e-06  Score=84.75  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc------------------------ccccccHHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV------------------------SDSKKIINEAISKFEE   67 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~------------------------~~~~~~~~eAi~~le~   67 (200)
                      +.+++|.+.+.+.+.++|.++.++..||.++-.+|+.+.+                        +...+++++|+.||.+
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r  232 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR  232 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            7899999999999999999999999999999998876432                        1233567888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      |++.+|.+-...|.....|..+|           +...|+.+|++.+.++|
T Consensus       233 AI~~~p~n~~~~~ers~L~~~~G-----------~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  233 AIQANPSNWELIYERSSLYQKTG-----------DLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHhcCCcchHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHhhCC
Confidence            88888888888888888888877           88888888888888888

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=3.3e-06  Score=78.21  Aligned_cols=119  Identities=18%  Similarity=0.137  Sum_probs=102.9

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +.+.+++|+..+...+...|+|+-.+...+.++++.++.          .+|++.|++++.++|+.+-...++|++|...
T Consensus       318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----------~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----------KEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            456788999999999999999999999999999999998          9999999999999999999999999999999


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH----HHHHhCCCChHHHHHHHHHHHhccc
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ----KSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~----kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                      |           ++.+|+...++.+..+|+++...    ++-+..-+..+.+...+..++-.+.
T Consensus       388 g-----------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         388 G-----------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR  440 (484)
T ss_pred             C-----------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence            9           99999999999999999998333    3334556677777777777664443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.47  E-value=2e-06  Score=84.80  Aligned_cols=134  Identities=19%  Similarity=0.141  Sum_probs=109.3

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .|=+|++-+.|+..+++++++||.++.++..||...+...+.       ..+..++..+.+|..+||.+|.++..|++-+
T Consensus       208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f  280 (1018)
T KOG2002|consen  208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-------DSYKKGVQLLQRAYKENNENPVALNHLANHF  280 (1018)
T ss_pred             HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence            356788899999999999999999999999999888764432       2348888888899999998888888777776


Q ss_pred             HhcCc--------------------------ccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 028992           87 TSCGF--------------------------LTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------  121 (200)
Q Consensus        87 ~~~G~--------------------------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------  121 (200)
                      +..|-                          ...-..-++|+||+|..||.+++..+|++.                   
T Consensus       281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~  360 (1018)
T KOG2002|consen  281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEE  360 (1018)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHH
Confidence            65551                          012233567799999999999999999993                   


Q ss_pred             ---HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          122 ---LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       122 ---~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                         ++++.++..|...+...-||..+..-
T Consensus       361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  361 SKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence               88899999999999999999888754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.46  E-value=3.1e-06  Score=83.82  Aligned_cols=103  Identities=13%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhh
Q 028992           21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK  100 (200)
Q Consensus        21 ~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~  100 (200)
                      +--.....|+.++..+.-+.+..+.|++          ..|++.|+++++.+|+++.+.+.+..++...|          
T Consensus        23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~----------~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G----------   82 (822)
T PRK14574         23 FISGFVVNPAMADTQYDSLIIRARAGDT----------APVLDYLQEESKAGPLQSGQVDDWLQIAGWAG----------   82 (822)
T ss_pred             HHcccccCccchhHHHHHHHHHHhCCCH----------HHHHHHHHHHHhhCccchhhHHHHHHHHHHcC----------
Confidence            3334568899999999999999999998          99999999999999999755557777777777          


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992          101 GDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus       101 ~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                       ++++|+.++++++.-+|.+.                     .|+++++.+|+.++++..++..+
T Consensus        83 -~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y  146 (822)
T PRK14574         83 -RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQ  146 (822)
T ss_pred             -CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence             66666666666662222221                     66666666666666666554333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.45  E-value=1.3e-06  Score=83.12  Aligned_cols=89  Identities=24%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.|...++.++..++..|.+++.+...|..|..+|+-          ++|-++.+.+++.|+..+-+|..+|.++.+.. 
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~----------~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-   89 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK----------EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-   89 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch----------HHHHHHHHHHhccCcccchhHHHHHHHHhhhh-
Confidence            3677888999999999999999999999999999998          99999999999999999999999999999966 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                +|++|++||+.|+.++|+|.
T Consensus        90 ----------~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   90 ----------KYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             ----------hHHHHHHHHHHHHhcCCCcH
Confidence                      99999999999999999998

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.45  E-value=1.9e-07  Score=56.53  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      +|++||++||+++++|++||.+|...|           ++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhcC
Confidence            479999999999999999999999999           9999863

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=4.6e-07  Score=81.13  Aligned_cols=116  Identities=11%  Similarity=0.117  Sum_probs=71.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      |-|..+++|.+.|+..++++|.+.++..-.|.-++.-++.          +-|+..|++.|.+--.+++.+.|+|.|.+.
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P----------E~AlryYRRiLqmG~~speLf~NigLCC~y  370 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP----------EMALRYYRRILQMGAQSPELFCNIGLCCLY  370 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh----------HHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence            3445556666666666666666666555555555555555          666666666666666666666666666666


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCC--CCH----------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE----------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--~~~----------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      -+           +||-++.+|+||+..--  +..                      .+|-+|.-+++..|.+.||+..-
T Consensus       371 aq-----------Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~  439 (478)
T KOG1129|consen  371 AQ-----------QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA  439 (478)
T ss_pred             hc-----------chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence            55           67777777777765533  222                      66666666777777777776544


Q ss_pred             H
Q 028992          145 I  145 (200)
Q Consensus       145 ~  145 (200)
                      .
T Consensus       440 ~  440 (478)
T KOG1129|consen  440 A  440 (478)
T ss_pred             h
Confidence            4

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.42  E-value=2.9e-06  Score=76.98  Aligned_cols=89  Identities=10%  Similarity=0.053  Sum_probs=66.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +.+..++|.+..+++++ .|.|++.....+.+.  .+++          ++++..+++.++.+|++++.+.++|.++...
T Consensus       275 ~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~~~----------~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        275 ECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--TNNP----------EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             HCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            34455666666666666 333444333333321  1333          8899999999999999999999999999998


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      +           ++++|.++|+++++.+|++..
T Consensus       342 ~-----------~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        342 G-----------EWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             C-----------CHHHHHHHHHHHHhcCCCHHH
Confidence            8           999999999999999999874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.41  E-value=2.2e-06  Score=77.26  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .|.+|+..|-+|++.||++-.++++.|.+|+.+|+-          .-|+.-|.++|++.|+...+....|++++++|  
T Consensus        53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----------k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G--  120 (504)
T KOG0624|consen   53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----------KAALQDLSRVLELKPDFMAARIQRGVVLLKQG--  120 (504)
T ss_pred             hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----------ccchhhHHHHHhcCccHHHHHHHhchhhhhcc--
Confidence            577888888888888888888888888888888887          77888888888888888888888888888888  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                               .+++|..-|++.|+.+|++.
T Consensus       121 ---------ele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  121 ---------ELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             ---------cHHHHHHHHHHHHhcCCCcc
Confidence                     99999999999999999886

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.41  E-value=1e-05  Score=73.35  Aligned_cols=130  Identities=11%  Similarity=0.094  Sum_probs=97.1

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHH---------------HH------------
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIIN---------------EA------------   61 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~---------------eA------------   61 (200)
                      -+.+.+++|++.+++..+.+|+++.++..++.++...|+++...+....+.               .+            
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~  243 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ  243 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346789999999999999999999999999999999988843221000000               01            


Q ss_pred             -HHHHHHHH----HhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992           62 -ISKFEEAL----VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------  121 (200)
Q Consensus        62 -i~~le~AL----~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------  121 (200)
                       .+.+.+..    +-.|+++.++..++.++...|           +.++|.+..+++++..|+..               
T Consensus       244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-----------~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~  312 (398)
T PRK10747        244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-----------DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQ  312 (398)
T ss_pred             CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHH
Confidence             01111111    234568888888899999988           99999999999999766554               


Q ss_pred             ---HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          122 ---LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       122 ---~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                         ..++.++..|++|+++..+++.++.++-
T Consensus       313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence               5556667889999999999999987664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.40  E-value=6e-07  Score=53.24  Aligned_cols=34  Identities=38%  Similarity=0.663  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      +.+|+++|.+|..+|           ++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence            468999999999999           9999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.40  E-value=2e-06  Score=67.23  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=70.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      ..+.|++|.+.++.++...|++   +.+..+++.+++..+++          ++|+..|+. +.-++-.+.++..+|.+|
T Consensus        60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIY  128 (145)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence            3478999999999999988665   45788899999998888          999999966 455666778888999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                      ...|           ++++|+..|++||
T Consensus       129 ~~~g-----------~~~~A~~~y~~Al  145 (145)
T PF09976_consen  129 LAQG-----------DYDEARAAYQKAL  145 (145)
T ss_pred             HHCC-----------CHHHHHHHHHHhC
Confidence            9988           9999999999985

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=6.3e-06  Score=69.64  Aligned_cols=102  Identities=15%  Similarity=0.237  Sum_probs=90.9

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      -+.|++|...|..|++..|..++     .+.|.|.|++.++..          +.||.-+-+||+|+|..-.|+--.+.+
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~----------e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW----------ESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH----------HHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            35799999999999999998655     668899999998888          999999999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH-hCCCC
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE-VSTKA  133 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle-~~~k~  133 (200)
                      |...-           .|++|+.-|++.++.+|.....|+++. +.|+.
T Consensus       178 yek~e-----------k~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  178 YEKME-----------KYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHhhh-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99866           999999999999999999998888884 34443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.39  E-value=1.1e-06  Score=72.34  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      ..|....+++|+..+++++.+||+..+++++||++|..++...... +...-+++|..+|++|..++|++....-.|..
T Consensus        44 g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   44 GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            3477789999999999999999999999999999999998854433 45566899999999999999999765444433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.37  E-value=2.9e-06  Score=84.12  Aligned_cols=97  Identities=27%  Similarity=0.290  Sum_probs=87.1

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      |.=|-+.||+|++..+++++.||+|-.++.-+|.++..+++ .          ++|-++|-.|.++||++.-||-.||+.
T Consensus        11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~l----------e~A~ehYv~AaKldpdnlLAWkGL~nL   80 (1238)
T KOG1127|consen   11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDL----------EKAAEHYVLAAKLDPDNLLAWKGLGNL   80 (1238)
T ss_pred             HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCH----------HHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence            34466789999999999999999999999999999999988 6          999999999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |.+.    |+    -.+++++..||++++.+.|+..
T Consensus        81 ye~~----~d----Il~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   81 YERY----ND----ILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             HHcc----ch----hhhhhHhHHHHHHHHHhhhhhh
Confidence            9872    12    2279999999999999998876

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=1.8e-06  Score=73.63  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=94.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +|.++.-.-||-.+..++.++|.-+++++.+|.-|...|+|          +-|.+.|.-.+++||..-.++.|.|.+++
T Consensus        75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f----------daa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc----------hHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45667777899999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhCCCCh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKAP  134 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~~k~~  134 (200)
                      .-|           +|.-|.+-|.+--+.||+++     .|-.-.+++|+..
T Consensus       145 Y~g-----------R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A  185 (297)
T COG4785         145 YGG-----------RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQA  185 (297)
T ss_pred             ecC-----------chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHH
Confidence            888           99999999999999999998     5555556666544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.3e-06  Score=82.57  Aligned_cols=124  Identities=19%  Similarity=0.264  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccc---------------------------ccccccHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV---------------------------SDSKKIINEAISKF   65 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~---------------------------~~~~~~~~eAi~~l   65 (200)
                      -|..+.....+++..||.||.+++.|++-++..++++.+                           .-+.|.+++|...|
T Consensus       251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY  330 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY  330 (1018)
T ss_pred             HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            467788889999999999999998888888877766532                           11336679999999


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------
Q 028992           66 EEALVIDPAK-HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------  121 (200)
Q Consensus        66 e~AL~ldP~~-~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------  121 (200)
                      .++++.+|++ .-.++.||..|...|           +++.|+.||++.+...|++.                       
T Consensus       331 ~~s~k~~~d~~~l~~~GlgQm~i~~~-----------dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a  399 (1018)
T KOG2002|consen  331 MESLKADNDNFVLPLVGLGQMYIKRG-----------DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA  399 (1018)
T ss_pred             HHHHccCCCCccccccchhHHHHHhc-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence            9999999999 788899999999988           99999999999999999997                       


Q ss_pred             --HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          122 --LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       122 --~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                        ...|+++..|.+.++|.+++..+-.+
T Consensus       400 ~~~l~K~~~~~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  400 SNVLGKVLEQTPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence              44577788899999999998877643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.7e-06  Score=74.42  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      .+|..|+..|.+++.++|+.+.-++|.+.+++.+.++          +.+.+-..+|++++|+..-+++.||.+..... 
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------~~v~~dcrralql~~N~vk~h~flg~~~l~s~-   92 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-   92 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh----------hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-
Confidence            4799999999999999999999999999999999999          99999999999999999999999999998866 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                                .|++|+.++++|..+
T Consensus        93 ----------~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 ----------GYDEAIKVLQRAYSL  107 (284)
T ss_pred             ----------cccHHHHHHHHHHHH
Confidence                      899999999999655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=9.8e-07  Score=81.87  Aligned_cols=142  Identities=18%  Similarity=0.281  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .|.+|-.++..++..+--++.+++|.|++-+..|++          +.|.+.|++||.-|....++++|+|..+..+|  
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~----------dka~~~ykeal~ndasc~ealfniglt~e~~~--  538 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL----------DKAAEFYKEALNNDASCTEALFNIGLTAEALG--  538 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH----------HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--
Confidence            566777777777777777788888877777766666          99999999999999999999999999999999  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhccccC
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTLG  151 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~~~  151 (200)
                               ++|+|++||-+.-.+=-++.                     +|-++..+.|.+|.....|+..+-..+.  
T Consensus       539 ---------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd--  607 (840)
T KOG2003|consen  539 ---------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD--  607 (840)
T ss_pred             ---------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc--
Confidence                     99999999998765544443                     5556666778888888888876653221  


Q ss_pred             CCCCcchhhhhcccccchhhhhhhHHHHHHHHHHHHH
Q 028992          152 GGSSASSAQSSKKKSSDLKYDIFGWAILAVGIVAWVG  188 (200)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~y~~~g~~~l~~~~~~~~~  188 (200)
                                 |.+.-.-|||--.+.---+-.|-|+|
T Consensus       608 -----------ksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  608 -----------KSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             -----------hhhhhhhhhhcccccCcchHHHHHHH
Confidence                       22333456665555544555666765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.35  E-value=1.6e-06  Score=78.22  Aligned_cols=102  Identities=20%  Similarity=0.105  Sum_probs=95.5

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      ++|=+.+.|++|+.+|.+++..+|.++-.++|.+.+|+++.+|          -.|.+-++.|+.+|-...-+|-..|.+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F----------A~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF----------AQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH----------HHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999999999999          899999999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      -..+|           ..++|.+-++.+|++.|++...+|.+.
T Consensus       175 R~~Lg-----------~~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  175 RESLG-----------NNMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             HHHHh-----------hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            99988           999999999999999999998887764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.34  E-value=6.8e-06  Score=71.38  Aligned_cols=85  Identities=22%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHH-HHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           31 DADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        31 d~~~l~~lG~al-~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      +....+..+..+ +..+++          ++|+..|++.++..|++   +.+++.||.+|+..|           ++++|
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y----------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A  199 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQ----------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDA  199 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHH
Confidence            457788888887 455677          99999999999999998   589999999999988           99999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992          107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      +.+|++++...|++.          +.+++++.++..+..
T Consensus       200 ~~~f~~vv~~yP~s~----------~~~dAl~klg~~~~~  229 (263)
T PRK10803        200 AYYFASVVKNYPKSP----------KAADAMFKVGVIMQD  229 (263)
T ss_pred             HHHHHHHHHHCCCCc----------chhHHHHHHHHHHHH
Confidence            999999999999874          455555556555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.33  E-value=1e-06  Score=55.77  Aligned_cols=43  Identities=23%  Similarity=0.233  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      |+++..+|.++..+|++          ++|+..|+++++.+|++++++..||.
T Consensus         1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            46899999999999999          99999999999999999999999985

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.32  E-value=1.6e-06  Score=51.02  Aligned_cols=34  Identities=29%  Similarity=0.574  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      +.+++.+|.+|..+|           ++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence            478999999999999           9999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=6e-06  Score=75.84  Aligned_cols=93  Identities=20%  Similarity=0.258  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      |+|.+.+++++.++|....+-..++..+..-|+.          +++|+.++++|.+-|+. ..|..||.++....    
T Consensus       421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~----------~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~N----  485 (564)
T KOG1174|consen  421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT----------KDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQN----  485 (564)
T ss_pred             HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc----------chHHHHHHHHHhhcccc-HHHHHHHHHHHHhh----
Confidence            6788888888888888888888888888877777          89999999999888876 56788898888876    


Q ss_pred             ChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992           95 DLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus        95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~  129 (200)
                             .+.+|+.+|++|+++||++..-.+.++.
T Consensus       486 -------e~Q~am~~y~~ALr~dP~~~~sl~Gl~~  513 (564)
T KOG1174|consen  486 -------EPQKAMEYYYKALRQDPKSKRTLRGLRL  513 (564)
T ss_pred             -------hHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence                   9999999999999999999987777743

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1e-05  Score=74.32  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=96.8

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.|+.|+-..++++..+|++.+.+...|.+|+.+++.          ++|+-.|+.|..+.|.+-+.|-.|-.+|...|+
T Consensus       314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~----------~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH----------TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch----------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            4688899999999999999999999999999999999          999999999999999999999999889988883


Q ss_pred             cc-------------CChHHhhc------------CHHHHHHHHHHHHHhCCCCH---------------------HHHH
Q 028992           92 LT-------------ADLSEAKG------------DFDKASECFQRAVDEEPTNE---------------------LYQK  125 (200)
Q Consensus        92 l~-------------~~~~~a~~------------~~d~A~~~fqkAl~l~P~~~---------------------~y~k  125 (200)
                      +.             |...++..            --|+|.+++++++.++|++.                     +.++
T Consensus       384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            21             11111111            12677777777777777775                     4445


Q ss_pred             HHHhCCCChHHHHHHHHHHHhccc
Q 028992          126 SLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       126 Ale~~~k~~e~~~~l~~~~~~~~~  149 (200)
                      +|...++ -.+|..||..+..++.
T Consensus       464 ~L~~~~D-~~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  464 HLIIFPD-VNLHNHLGDIMRAQNE  486 (564)
T ss_pred             HHhhccc-cHHHHHHHHHHHHhhh
Confidence            5544433 4567777777665554

>TIGR00540 hemY_coli hemY protein

Probab=98.29  E-value=3e-05  Score=70.48  Aligned_cols=119  Identities=12%  Similarity=0.049  Sum_probs=91.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~-~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .+.+.++.|.+.++++.+..|++. .+....+.+++..+++          ++|...+++.++.+|+++.++..++.+|.
T Consensus       129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~~  198 (409)
T TIGR00540       129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL----------HAARHGVDKLLEMAPRHKEVLKLAEEAYI  198 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            355677778888888777777764 4555567777777777          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHHhCC----CChHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST----KAPELHM  138 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------------~y~kAle~~~----k~~e~~~  138 (200)
                      ..|           ++++|.+.+++..+..+.++                         ...++.+..|    +.++++.
T Consensus       199 ~~~-----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~  267 (409)
T TIGR00540       199 RSG-----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI  267 (409)
T ss_pred             HHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence            988           99999999999987644332                         1112233445    5889999


Q ss_pred             HHHHHHHhcc
Q 028992          139 ELHKHGINQQ  148 (200)
Q Consensus       139 ~l~~~~~~~~  148 (200)
                      .++..+..++
T Consensus       268 ~~a~~l~~~g  277 (409)
T TIGR00540       268 ALAEHLIDCD  277 (409)
T ss_pred             HHHHHHHHCC
Confidence            9988776544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.1e-06  Score=78.46  Aligned_cols=113  Identities=22%  Similarity=0.297  Sum_probs=94.9

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------------H
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------------T   78 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------------a   78 (200)
                      ++++.+|....-..+++|+.+.++++..|.++......          +.|+.+|+++|.+||++-+            .
T Consensus       182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~----------~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA----------DKAINHFQQALRLDPDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             cccchhHHHHHHHHHhcccchhHHHHhcccccccccch----------HHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence            56889999999999999999999999999999998887          9999999999999999765            3


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHHhCCCC
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVSTKA  133 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------------~y~kAle~~~k~  133 (200)
                      +-.-||-.+..|           ++.+|.+||..||.+||+|-                         .+..++.+++..
T Consensus       252 ~k~~gN~~fk~G-----------~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  252 KKERGNDAFKNG-----------NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             HHhhhhhHhhcc-----------chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            455677777777           99999999999999999996                         455666777777


Q ss_pred             hHHHHHHHHHH
Q 028992          134 PELHMELHKHG  144 (200)
Q Consensus       134 ~e~~~~l~~~~  144 (200)
                      ..+++.-++..
T Consensus       321 ikall~ra~c~  331 (486)
T KOG0550|consen  321 IKALLRRANCH  331 (486)
T ss_pred             HHHHHHHHHHH
Confidence            66666555433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.27  E-value=2e-05  Score=67.49  Aligned_cols=126  Identities=13%  Similarity=0.103  Sum_probs=92.8

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNL---TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGN   84 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l---~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~   84 (200)
                      -+.|++|++.++......|..+.+.   +++|.+++.++++          ++|+..|++.++++|+++   .+++.+|.
T Consensus        45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y----------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            4789999999999999999987765   8999999999998          999999999999999875   67889999


Q ss_pred             HHHhcC------cccCChH-HhhcCHHHHHHHHHHHHHhCCCCHHHHHHH----HhCCCChHHHHHHHHHHHh
Q 028992           85 AHTSCG------FLTADLS-EAKGDFDKASECFQRAVDEEPTNELYQKSL----EVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        85 a~~~~G------~l~~~~~-~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl----e~~~k~~e~~~~l~~~~~~  146 (200)
                      ++..++      ++..+.. .-.....+|+..|++.|+.-|++.....|-    ++..+..+-.+.+++.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~  187 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK  187 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            875544      1221111 112235689999999999999998554443    2333334444455554443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.27  E-value=2.2e-06  Score=77.23  Aligned_cols=102  Identities=21%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTR----WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~----lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      +..-+-..|.++++..++.++.+|.-+.+.++    +..|+.+-+++          -+||..+.++|.++|++.+++..
T Consensus       277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~----------~eAiqqC~evL~~d~~dv~~l~d  346 (504)
T KOG0624|consen  277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF----------GEAIQQCKEVLDIDPDDVQVLCD  346 (504)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH----------HHHHHHHHHHHhcCchHHHHHHH
Confidence            33445568899999999999999996665544    44555555666          99999999999999999999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      .+.+|..-.           .||.||.-|++|.+.+|+|...|..++
T Consensus       347 RAeA~l~dE-----------~YD~AI~dye~A~e~n~sn~~~reGle  382 (504)
T KOG0624|consen  347 RAEAYLGDE-----------MYDDAIHDYEKALELNESNTRAREGLE  382 (504)
T ss_pred             HHHHHhhhH-----------HHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            999998844           999999999999999999985555543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=6.3e-06  Score=79.52  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..|+++.+.++..+++||.-.+.|+++|.+.+.++++          +.|+..|.+++.++|++.++|.||..+|+.+| 
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~----------q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~-  567 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE----------QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK-  567 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh----------HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-
Confidence            5799999999999999999999999999999999999          99999999999999999999999999999988 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                .-.+|-.++++|+..+-++.
T Consensus       568 ----------~k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  568 ----------KKKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             ----------hhHHHHHHHHHHhhcCCCCC
Confidence                      88999999999999885553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.20  E-value=1.8e-05  Score=77.68  Aligned_cols=93  Identities=11%  Similarity=0.084  Sum_probs=70.4

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      -.+.+++.++|+-+|.+|++.+|.+-+...+....|.++|+.          ..|...|.+.+.++| ..+.-+++..+.
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~----------~~Am~~f~~l~~~~p-~~d~er~~d~i~  284 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL----------KRAMETFLQLLQLDP-PVDIERIEDLIR  284 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH----------HHHHHHHHHHHhhCC-chhHHHHHHHHH
Confidence            356788899999999999999999999999999999998888          999999999999999 556666655554


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      ....    .... .+.-+.|++.++.++.
T Consensus       285 ~~~~----~~~~-~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  285 RVAH----YFIT-HNERERAAKALEGALS  308 (895)
T ss_pred             HHHH----HHHH-hhHHHHHHHHHHHHHh
Confidence            3211    0001 1144788888888777

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.3e-06  Score=75.95  Aligned_cols=94  Identities=21%  Similarity=0.198  Sum_probs=84.6

Q ss_pred             hhHHHHhchHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH
Q 028992            5 QSDFDRLLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW   80 (200)
Q Consensus         5 ~~~~~~l~~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~   80 (200)
                      .++.=|-+.|-.|-+.|..++.++|++..    .+.|.+.+...+|+.          .+||+-.++|++|||.--.++.
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl----------~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL----------REAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc----------hhhhhhhhhhhhcCHHHHHHHH
Confidence            45666778999999999999999999654    577888888888888          9999999999999999999999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..|+||..++           .+++|++.|++|++.+-+
T Consensus       326 ~ra~c~l~le-----------~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  326 RRANCHLALE-----------KWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHH-----------HHHHHHHHHHHHHhhccc
Confidence            9999999988           999999999999988766

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.20  E-value=8.8e-06  Score=81.03  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=85.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc--------ccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD--------SKKIINEAISKFEEALVIDPAKHYTL   79 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~--------~~~~~~eAi~~le~AL~ldP~~~~a~   79 (200)
                      +.+...+++|.+.++.+++.+|+....++.+|.+++..+++..+.-        ....+ .+++.+-..+...|.+-.|+
T Consensus        41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence            3467789999999999999999999999999998888777654321        11122 66777776777778888999


Q ss_pred             HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +.||.||-++|           +.++|...|++++++||+|+
T Consensus       120 ~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~  150 (906)
T PRK14720        120 RTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNP  150 (906)
T ss_pred             HHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccH
Confidence            99999999999           99999999999999999998

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.17  E-value=1.3e-05  Score=75.66  Aligned_cols=90  Identities=24%  Similarity=0.228  Sum_probs=77.5

Q ss_pred             HHHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------
Q 028992            7 DFDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------   71 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------   71 (200)
                      .+-..+.||.|...++.++..        +|.=...+..+|.+|..+++|          .+|+..|++||.|       
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~----------~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY----------DEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHhcCC
Confidence            345678999999999999998        777777777799999999999          9999999999977       


Q ss_pred             -CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           72 -DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        72 -dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                       +|.-..++.+|+.+|...|           +|++|..|+++|+++-
T Consensus       278 ~h~~va~~l~nLa~ly~~~G-----------Kf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQG-----------KFAEAEEYCERALEIY  313 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccC-----------ChHHHHHHHHHHHHHH
Confidence             5555578899999999999           9999999999998874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.17  E-value=1.9e-05  Score=76.58  Aligned_cols=106  Identities=22%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +...-++++-+..++..++|..+..++..|..+...|++          +||.+.|..|+.+||+++.+...+|.+|...
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            334456677777777777788787888888777777777          7888888888888888888877888887777


Q ss_pred             CcccCChHHhhcCHHHHHH--HHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992           90 GFLTADLSEAKGDFDKASE--CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~--~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                      |           +-.-|.+  ....|+++||.|             +++|+.+|..+-.++.
T Consensus       732 G-----------~~~la~~~~~L~dalr~dp~n-------------~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  732 G-----------SPRLAEKRSLLSDALRLDPLN-------------HEAWYYLGEVFKKLGD  769 (799)
T ss_pred             C-----------CcchHHHHHHHHHHHhhCCCC-------------HHHHHHHHHHHHHccc
Confidence            7           4444444  666666666654             8999999988876664

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.2e-05  Score=73.19  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +|..|.+|++.+.+++.++|+|..++++.|.|++.++++          +.|+..|++|++++|+|..+...|..+-...
T Consensus       269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999          9999999999999999999998888776553


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                                +...++..+.|.+.+..-+..
T Consensus       339 ----------~~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  339 ----------REYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             ----------HHHHHHHHHHHHHHhhccccc
Confidence                      235666788888888765544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.10  E-value=7.2e-05  Score=59.54  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=86.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG   83 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG   83 (200)
                      +-+.|++|++.++......|.   ...+...+|.+++..+++          ++|+..+++-++++|+++   .+++..|
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y----------~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY----------EEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            446899999999999988876   567899999999999998          999999999999999987   4778899


Q ss_pred             HHHHhcC--cc--cCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           84 NAHTSCG--FL--TADLSEAKGDFDKASECFQRAVDEEPTNELYQKS  126 (200)
Q Consensus        84 ~a~~~~G--~l--~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA  126 (200)
                      .+++.+.  +|  .+....-.....+|...|++.|+.-|+++.-..|
T Consensus        92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9988764  11  0133333445789999999999999998754443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=98.10  E-value=0.00013  Score=57.92  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=79.4

Q ss_pred             CCCChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-hCCCC-HHH
Q 028992            1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAK-HYT   78 (200)
Q Consensus         1 ~~~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~-~~a   78 (200)
                      |++...+.+-..-+-...+.+.+.-...--..++.++++.+|....+       ...+++.|.+|+..++ -.|.. -+.
T Consensus         1 ~~~~~~~p~a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~-------~~dv~~GI~iLe~l~~~~~~~~rRe~   73 (149)
T KOG3364|consen    1 FSGSLKEPWAIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRD-------TEDVQEGIVILEDLLKSAHPERRREC   73 (149)
T ss_pred             CCccccchhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccc-------hHHHHHhHHHHHHHhhhcCcccchhh
Confidence            44555555555555556666666555555567888999999986433       4556999999999997 55553 478


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      +|.|+..+..++           +|++|+.|....++.+|+|..
T Consensus        74 lyYLAvg~yRlk-----------eY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   74 LYYLAVGHYRLK-----------EYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             hhhhHHHHHHHh-----------hHHHHHHHHHHHHhhCCCcHH
Confidence            899999999988           999999999999999999863

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.09  E-value=8.4e-06  Score=80.95  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc--------------------------ccccHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD--------------------------SKKIINEAISKFE   66 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~--------------------------~~~~~~eAi~~le   66 (200)
                      ....|++.|.+|.++||.|+++....+..+.+....+.+..                          -.+....||..|+
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ  586 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ  586 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence            45679999999999999999999777777766444332110                          1145699999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        67 ~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      -||+.||++...|-.||.+|...|           ++.-|++.|.||..++|.+-
T Consensus       587 sALR~dPkD~n~W~gLGeAY~~sG-----------ry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  587 SALRTDPKDYNLWLGLGEAYPESG-----------RYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhcCCchhHHHHHHHHHHHHhcC-----------ceehHHHhhhhhHhcCcHhH
Confidence            999999999999999999999999           99999999999999999986

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.09  E-value=3.5e-05  Score=59.52  Aligned_cols=69  Identities=25%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      +.+++..|.++-.+|+.          ++||..|++|+...++.   ..+++.+|.+|..+|           ++++|+.
T Consensus         1 ~~~~~~~A~a~d~~G~~----------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~   59 (120)
T PF12688_consen    1 PRALYELAWAHDSLGRE----------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALA   59 (120)
T ss_pred             CchHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence            35789999999999998          99999999999986555   578999999999999           9999999


Q ss_pred             HHHHHHHhCCCCH
Q 028992          109 CFQRAVDEEPTNE  121 (200)
Q Consensus       109 ~fqkAl~l~P~~~  121 (200)
                      .+++++...|+.+
T Consensus        60 ~L~~~~~~~p~~~   72 (120)
T PF12688_consen   60 LLEEALEEFPDDE   72 (120)
T ss_pred             HHHHHHHHCCCcc
Confidence            9999999989843

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.08  E-value=3.1e-05  Score=66.26  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      .+++.++..|..+...|++          ++|++.|++++...|..+.+.   +.+|.+|...+           ++++|
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y----------~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A   88 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNW----------KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLA   88 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHH
Confidence            3788889999999998888          999999999999999998765   89999999988           99999


Q ss_pred             HHHHHHHHHhCCCCH-----HHHHHH
Q 028992          107 SECFQRAVDEEPTNE-----LYQKSL  127 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~-----~y~kAl  127 (200)
                      +.+|++.++..|+++     .|.+++
T Consensus        89 ~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         89 QAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            999999999999986     555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=7e-06  Score=48.55  Aligned_cols=34  Identities=29%  Similarity=0.604  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~   75 (200)
                      +.+|+++|.++..++++          ++|+.+|++||++||++
T Consensus         1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence            57899999999999999          99999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=4.9e-05  Score=70.62  Aligned_cols=98  Identities=20%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +....++|.+.+++++.++|+.+-.+.++|.+|+..|++          ++||..+++.+.-+|++++.|..|+.+|..+
T Consensus       352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~  421 (484)
T COG4783         352 EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAEL  421 (484)
T ss_pred             HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence            445789999999999999999999999999999999999          8999999999999999999999999999998


Q ss_pred             Cc------ccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           90 GF------LTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        90 G~------l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      |-      -+.+..-=.|++++|+....+|.+..
T Consensus       422 g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         422 GNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             CchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            81      01111122235555555555555443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.5e-05  Score=46.75  Aligned_cols=34  Identities=38%  Similarity=0.620  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~   75 (200)
                      +++++.+|.++..++++          ++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence            57899999999999999          99999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.96  E-value=1e-05  Score=57.33  Aligned_cols=54  Identities=26%  Similarity=0.455  Sum_probs=46.6

Q ss_pred             ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           56 KIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +.+++|+..|+++++.+|+  +...++.+|.+|+..|           +|++|+.++++ +..+|.+.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~~   58 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSNP   58 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCCH
Confidence            4569999999999999996  4667788999999999           99999999999 77877663

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=2.7e-05  Score=49.15  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      |+++..+|.+|..+|           ++++|+++|+++++.+|+|...+..+
T Consensus         1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            468899999999999           99999999999999999997655444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.95  E-value=0.00011  Score=60.86  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG   83 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG   83 (200)
                      +.+.|++|++.++......|.   -+++++.+|.++...+++          ++|+..|++-++..|+++   .+++.+|
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y----------~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY----------EEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            456899999999999998876   567899999999999998          999999999999999976   5889999


Q ss_pred             HHHHhcCcccCCh---HHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           84 NAHTSCGFLTADL---SEAKGDFDKASECFQRAVDEEPTNELYQKS  126 (200)
Q Consensus        84 ~a~~~~G~l~~~~---~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA  126 (200)
                      .++..+.   ++.   ..-.....+|+..|+..++.-|++.....|
T Consensus        87 ~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A  129 (203)
T PF13525_consen   87 LSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA  129 (203)
T ss_dssp             HHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred             HHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence            9987643   111   222336789999999999999999844433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.95  E-value=0.00011  Score=73.48  Aligned_cols=110  Identities=11%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCCh
Q 028992           17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL   96 (200)
Q Consensus        17 A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~   96 (200)
                      +.+.+-..+-..|++-.+++.+|.||-.+|+.          ++|+..++++|++||+++.++.++|..|..        
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae--------  162 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVKKLATSYEE--------  162 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------
Confidence            44455555555677779999999999999998          999999999999999999999999999987        


Q ss_pred             HHhhcCHHHHHHHHHHHHHhCCCCHH-------HHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           97 SEAKGDFDKASECFQRAVDEEPTNEL-------YQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        97 ~~a~~~~d~A~~~fqkAl~l~P~~~~-------y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                         . ++++|++++++|+...=+...       ..+-++.+|...+....+-+....+-
T Consensus       163 ---~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~  217 (906)
T PRK14720        163 ---E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR  217 (906)
T ss_pred             ---h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence               3 899999999999988655544       44555678888888888888777543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=1.8e-05  Score=69.51  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE--LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~--l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ++.+++.|.+.++..-+.+.+  .++++++.+++.  .|.        ..+++|...|++.....|..+..+..++.++.
T Consensus       143 ~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~--------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l  212 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATGG--------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL  212 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTT--------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            566778888877776666544  345555555544  332        11277777777766666677777777777777


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           +|++|...+++|++.+|+++
T Consensus       213 ~~~-----------~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  213 QLG-----------HYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HCT------------HHHHHHHHHHHCCC-CCHH
T ss_pred             HhC-----------CHHHHHHHHHHHHHhccCCH
Confidence            777           77777777777777777776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.95  E-value=0.0002  Score=58.36  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=70.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992           24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        24 a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      ...+.++..+..+..|.-+...|++          ++|...|+-...+||.+++.+..||.++..++           +|
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~----------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-----------~y   87 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRL----------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-----------QF   87 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-----------HH
Confidence            4456777888899999999998888          99999999999999999999999999999987           99


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 028992          104 DKASECFQRAVDEEPTNE  121 (200)
Q Consensus       104 d~A~~~fqkAl~l~P~~~  121 (200)
                      ++|+.+|-.|..++++++
T Consensus        88 ~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         88 QKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHHHHHHHHHcccCCC
Confidence            999999999999999887

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=0.00024  Score=61.83  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=85.9

Q ss_pred             HhchHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLG   83 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~---d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---~~~a~~~LG   83 (200)
                      +-+.|..|...|..-+...|+   -++++++||.+++.+|++          ++|...|..+.+-.|+   -|++++.||
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y----------~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY----------EDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc----------hHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            345688999999998898888   468999999999999999          9999999999998776   469999999


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .++..+|           +-|+|-..|++.++.-|+.+.-+++-
T Consensus       223 ~~~~~l~-----------~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         223 VSLGRLG-----------NTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHHhc-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999998           99999999999999999998655543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.94  E-value=0.0002  Score=65.68  Aligned_cols=86  Identities=21%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..++.|+..+++..+.+|+   +...++.+++..++-          .+|+..++++|+.+|.+.+.+..-+..+...+ 
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E----------~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-  248 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE----------VEAIRLLNEALKENPQDSELLNLQAEFLLSKK-  248 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-
Confidence            4789999999999888875   666788888876665          89999999999999999999999999999977 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                +++.|+++.++|+.+.|++.
T Consensus       249 ----------~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  249 ----------KYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             ----------CHHHHHHHHHHHHHhCchhH
Confidence                      99999999999999999986

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.93  E-value=1.8e-05  Score=46.55  Aligned_cols=33  Identities=30%  Similarity=0.621  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      .+|+.+|.+|..+|           ++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence            57899999999999           9999999999999999965

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.88  E-value=0.00011  Score=67.34  Aligned_cols=77  Identities=19%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      -.+|++...+++..+|.|++.+...+..|+..+++          +.|+.+.++|..+.|++...|+.|+.+|..+|   
T Consensus       216 E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~---  282 (395)
T PF09295_consen  216 EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY----------ELALEIAKKAVELSPSEFETWYQLAECYIQLG---  282 (395)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC---
Confidence            46889999999999999999999999999998888          99999999999999999999999999999999   


Q ss_pred             CChHHhhcCHHHHHHHHH
Q 028992           94 ADLSEAKGDFDKASECFQ  111 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fq  111 (200)
                              +|++|+....
T Consensus       283 --------d~e~ALlaLN  292 (395)
T PF09295_consen  283 --------DFENALLALN  292 (395)
T ss_pred             --------CHHHHHHHHh
Confidence                    9999996655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.87  E-value=0.00028  Score=56.26  Aligned_cols=97  Identities=15%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHh
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLGNAHTS   88 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----~a~~~LG~a~~~   88 (200)
                      ..+.|++.+.+++.+-|..+.+++|.+.++...++.          ++|+.-+++|+++.-...    .++...|.+|..
T Consensus        58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----------e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----------EEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999999888887          899999999998865443    467788999998


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCC
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVST  131 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~  131 (200)
                      +|           +.|+|..-|+.|-++-..++. ++-+++||
T Consensus       128 ~g-----------~dd~AR~DFe~AA~LGS~FAr-~QLV~lNP  158 (175)
T KOG4555|consen  128 LG-----------NDDAARADFEAAAQLGSKFAR-EQLVELNP  158 (175)
T ss_pred             hC-----------chHHHHHhHHHHHHhCCHHHH-HHHHhcCh
Confidence            88           888898888888888655432 34445665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.87  E-value=3.4e-05  Score=71.50  Aligned_cols=55  Identities=9%  Similarity=-0.136  Sum_probs=51.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADN---LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~---l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +-+++.|++|+..++++++++|+++++   |+|+|.+|..+|++          ++|+++|++|+++.
T Consensus        85 L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------dEAla~LrrALels  142 (453)
T PLN03098         85 LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----------KKAADCLRTALRDY  142 (453)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence            456889999999999999999999976   99999999999998          99999999999983

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.86  E-value=1.7e-05  Score=47.88  Aligned_cols=28  Identities=11%  Similarity=0.232  Sum_probs=26.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992           21 AEANYAKDPLDADNLTRWGEALLELSQF   48 (200)
Q Consensus        21 ~e~a~~~~P~d~~~l~~lG~al~~l~~~   48 (200)
                      |+++++++|+|+++|+++|.+|...|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~   29 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDY   29 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence            6889999999999999999999999998

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.81  E-value=2.4e-05  Score=72.62  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..|+.|...|.+|++++|+++..+-+.+.+++..+.|          ..|+.-+.+|++++|...-+|+-.|.+...++ 
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~----------~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~-   86 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF----------GGALHDALKAIELDPTYIKAYVRRGTAVMALG-   86 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechh----------hhHHHHHHhhhhcCchhhheeeeccHHHHhHH-
Confidence            4799999999999999999999999999999999998          99999999999999999999999999999998 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                                .|.+|..-|++...+.|+....++.+.
T Consensus        87 ----------~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   87 ----------EFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             ----------HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence                      999999999999999999986666553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.79  E-value=1.1e-05  Score=72.24  Aligned_cols=89  Identities=17%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ++|..|++.+-.++.++|..+..+.+.+.+++++++.          ..||.-+..|++|||+...-|-..|.++..+| 
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp----------~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-  196 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP----------NAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-  196 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceeeeccCC----------chhhhhhhhhhccCcccccccchhhHHHHHhh-
Confidence            5799999999999999999999999999999999999          99999999999999999999999999999999 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                ++++|.+++..|++++=+-+
T Consensus       197 ----------~~e~aa~dl~~a~kld~dE~  216 (377)
T KOG1308|consen  197 ----------NWEEAAHDLALACKLDYDEA  216 (377)
T ss_pred             ----------chHHHHHHHHHHHhccccHH
Confidence                      99999999999998864443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.00016  Score=61.93  Aligned_cols=59  Identities=32%  Similarity=0.406  Sum_probs=54.7

Q ss_pred             ccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           52 SDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        52 ~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .||.|...-|.--|.++|.|+|+-++++..||.-++.-|           +||.|.+.|.-.+++||.++
T Consensus        75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-----------~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-----------cchHHHHHhhhHhccCCcch
Confidence            356666688999999999999999999999999999988           99999999999999999997

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=0.00015  Score=70.17  Aligned_cols=114  Identities=22%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---------cCCccc---------ccccccHHHHHHHHHHHHHhCCCCHH
Q 028992           16 HNRKTAEANYAKDPLDADNLTRWGEALLEL---------SQFESV---------SDSKKIINEAISKFEEALVIDPAKHY   77 (200)
Q Consensus        16 ~A~~~~e~a~~~~P~d~~~l~~lG~al~~l---------~~~~~~---------~~~~~~~~eAi~~le~AL~ldP~~~~   77 (200)
                      +|-+...+.++ +|+|+-.+..+|.++...         ++..++         .-+.+.++++..+|+..++++|-..+
T Consensus       442 kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~  520 (777)
T KOG1128|consen  442 KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG  520 (777)
T ss_pred             hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence            33344444445 688899998888876542         221111         12335689999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHH
Q 028992           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPEL  136 (200)
Q Consensus        78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~  136 (200)
                      .|+.+|.+..+++           ++..|.++|.+++.++|++.                     ....|+.-+.+..+.
T Consensus       521 ~wf~~G~~ALqle-----------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~i  589 (777)
T KOG1128|consen  521 TWFGLGCAALQLE-----------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQI  589 (777)
T ss_pred             HHHhccHHHHHHh-----------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence            9999999999988           99999999999999999997                     444555555555555


Q ss_pred             HHHHH
Q 028992          137 HMELH  141 (200)
Q Consensus       137 ~~~l~  141 (200)
                      +.|..
T Consensus       590 WENym  594 (777)
T KOG1128|consen  590 WENYM  594 (777)
T ss_pred             eechh
Confidence            55554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.76  E-value=0.00078  Score=52.46  Aligned_cols=80  Identities=21%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNA   85 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a   85 (200)
                      .....+.+.++.....+|+.   ..+...+|.++...|++          ++|+..|++++...|+.   +.+.+.|+.+
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~   94 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------DEAKAALEKALANAPDPELKPLARLRLARI   94 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            45566677788888899998   67788899999999998          99999999999988665   4578889999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +...|           +|++|+..++.
T Consensus        95 ~~~~~-----------~~d~Al~~L~~  110 (145)
T PF09976_consen   95 LLQQG-----------QYDEALATLQQ  110 (145)
T ss_pred             HHHcC-----------CHHHHHHHHHh
Confidence            99988           99999999966

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.73  E-value=0.00036  Score=55.58  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      .+..+++-|...+..|++          ++|+..|+.....-|-.+   .+...||.+|+..|           ++++|+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y----------~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-----------~y~~A~   67 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNY----------EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-----------DYEEAI   67 (142)
T ss_pred             CHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-----------CHHHHH
Confidence            567889999999998888          999999999999988754   68889999999988           999999


Q ss_pred             HHHHHHHHhCCCCH-----HHHHHHH
Q 028992          108 ECFQRAVDEEPTNE-----LYQKSLE  128 (200)
Q Consensus       108 ~~fqkAl~l~P~~~-----~y~kAle  128 (200)
                      ..+++-++++|+++     .|+++|.
T Consensus        68 a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   68 AAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            99999999999997     7777764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.73  E-value=0.00025  Score=58.72  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      +++.++..|..++..|++          .+|+..|++.+...|..   +++.+.+|.++...|           ++++|+
T Consensus         4 ~~~~lY~~a~~~~~~g~y----------~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-----------~y~~A~   62 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDY----------EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-----------DYEEAI   62 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence            678899999999999998          99999999999998875   478999999999988           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 028992          108 ECFQRAVDEEPTNE  121 (200)
Q Consensus       108 ~~fqkAl~l~P~~~  121 (200)
                      ..|++-++..|+++
T Consensus        63 ~~~~~fi~~yP~~~   76 (203)
T PF13525_consen   63 AAYERFIKLYPNSP   76 (203)
T ss_dssp             HHHHHHHHH-TT-T
T ss_pred             HHHHHHHHHCCCCc
Confidence            99999999999986

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.00029  Score=63.14  Aligned_cols=95  Identities=20%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      -...++|++.+++..++.|.+-.+  .++-.|+++.+-   ....+..+.|+..+++|++-||+...+-..+|.++...|
T Consensus       154 treW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~---~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g  228 (389)
T COG2956         154 TREWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQ---ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG  228 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence            345677777777777777765432  344444444331   111233478888899999999999888888999888877


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                 +|.+|++.++++++.||++-
T Consensus       229 -----------~y~~AV~~~e~v~eQn~~yl  248 (389)
T COG2956         229 -----------DYQKAVEALERVLEQNPEYL  248 (389)
T ss_pred             -----------chHHHHHHHHHHHHhChHHH
Confidence                       99999999999999988874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00031  Score=65.65  Aligned_cols=89  Identities=17%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.+++|.+.|.+++.-+....++++|+|..+-.+|+.          ++|+.||-+.-.|--++.++++.++++|..+. 
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----------deald~f~klh~il~nn~evl~qianiye~le-  572 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----------DEALDCFLKLHAILLNNAEVLVQIANIYELLE-  572 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-
Confidence            3577888888888888888888888888888888877          88888888877777788888888888888866 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                +...|++++-++..+=|+++
T Consensus       573 ----------d~aqaie~~~q~~slip~dp  592 (840)
T KOG2003|consen  573 ----------DPAQAIELLMQANSLIPNDP  592 (840)
T ss_pred             ----------CHHHHHHHHHHhcccCCCCH
Confidence                      88888888888888888887

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.69  E-value=0.0032  Score=47.00  Aligned_cols=120  Identities=24%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             HHHHhchHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYA--KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~--~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+.....+..+...+.....  ..+.....+..+|..+...+++          .+++..++.++..++.........+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----------EEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            34455667777777777776  7888888888888888887776          88888888888888887666666666


Q ss_pred             -HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--C-H---------------------HHHHHHHhCCC-ChHHHH
Q 028992           85 -AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--N-E---------------------LYQKSLEVSTK-APELHM  138 (200)
Q Consensus        85 -a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~-~---------------------~y~kAle~~~k-~~e~~~  138 (200)
                       ++...|           ++++|+.+|++++..+|.  . .                     .+.+++...+. ....+.
T Consensus       138 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         138 GALYELG-----------DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHHcC-----------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence             787877           888888888888887773  1 1                     45555566666 466666


Q ss_pred             HHHHHHHhc
Q 028992          139 ELHKHGINQ  147 (200)
Q Consensus       139 ~l~~~~~~~  147 (200)
                      .++..+..+
T Consensus       207 ~~~~~~~~~  215 (291)
T COG0457         207 NLGLLYLKL  215 (291)
T ss_pred             HhhHHHHHc
Confidence            666655543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00094  Score=59.93  Aligned_cols=96  Identities=15%  Similarity=0.111  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGF   91 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-~a~~~LG~a~~~~G~   91 (200)
                      .++.|+...++|+..||++..+-+.+|.+....|+|          +.|++.++.+++.||... ++.-.|-.||..+| 
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg-  263 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLG-  263 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC-
Confidence            567799999999999999999999999999999999          999999999999999965 67778999999999 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHh
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEV  129 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAle~  129 (200)
                                +.++.+.+..++.+..++.+    .|+...+.
T Consensus       264 ----------~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~  295 (389)
T COG2956         264 ----------KPAEGLNFLRRAMETNTGADAELMLADLIELQ  295 (389)
T ss_pred             ----------CHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence                      99999999999999998876    55555544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.63  E-value=9.8e-05  Score=66.85  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      --.|+-|+.+|.|          +|||.||-+++.++|.++-.+.|.+.+|+.+.           .|..|..-+..|+.
T Consensus       101 KE~GN~yFKQgKy----------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-----------~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  101 KERGNTYFKQGKY----------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-----------SFAQAEEDCEAAIA  159 (536)
T ss_pred             HHhhhhhhhccch----------hHHHHHhhhhhccCCCCccchhhHHHHHHHHH-----------HHHHHHHhHHHHHH
Confidence            4567888888888          99999999999999999999999999999987           88888888888888


Q ss_pred             hCCCCH---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992          116 EEPTNE---------------------LYQKSLEVSTKAPELHMELHK  142 (200)
Q Consensus       116 l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~  142 (200)
                      +|-.+.                     .|+.+|++.|+..|+.-.++.
T Consensus       160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence            876654                     788899999999888877764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.62  E-value=0.0013  Score=49.12  Aligned_cols=91  Identities=26%  Similarity=0.371  Sum_probs=68.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDP---LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLG   83 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P---~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~~~a~~~LG   83 (200)
                      +..++.++.|...+++++..+|   .........+..+...+++          ++|+..+.+++...|. ...++..++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKALKLNPDDDAEALLNLG  209 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHHHhhCcccchHHHHHhh
Confidence            3456677788888888777666   3555555555555555555          8888888888888888 688888888


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..+...+           ++++|+.++.+++...|+
T Consensus       210 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         210 LLYLKLG-----------KYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence            8888877           888888888888888887

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.00068  Score=59.02  Aligned_cols=87  Identities=23%  Similarity=0.297  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      +++..++.+..++..|+|          .+|...|..=++.-|+.   ++++|.||.+++.+|           +|++|.
T Consensus       140 ~~~~~Y~~A~~~~ksgdy----------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa  198 (262)
T COG1729         140 PATKLYNAALDLYKSGDY----------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAA  198 (262)
T ss_pred             chhHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHH
Confidence            345589999999998888          99999999999999985   589999999999999           999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          108 ECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       108 ~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      ..|.++++-.|++          ||+|+..+.|+..+...+
T Consensus       199 ~~f~~~~k~~P~s----------~KApdallKlg~~~~~l~  229 (262)
T COG1729         199 YIFARVVKDYPKS----------PKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHHHHHHHhCCCC----------CCChHHHHHHHHHHHHhc
Confidence            9999999999985          789999999998775433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.55  E-value=0.00042  Score=66.49  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -.|+.-++|.+....++..|+...-+|+-+|.++..-..+          ++||.||+.||+++|+|-..|..|+.....
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999876666          999999999999999999999999998888


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++           +++-....-.+-++++|++-
T Consensus       122 mR-----------d~~~~~~tr~~LLql~~~~r  143 (700)
T KOG1156|consen  122 MR-----------DYEGYLETRNQLLQLRPSQR  143 (700)
T ss_pred             HH-----------hhhhHHHHHHHHHHhhhhhH
Confidence            77           77777777777778887775

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.53  E-value=0.00048  Score=54.89  Aligned_cols=67  Identities=21%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      .+..-|+++.+.|+.          +.|++.|.+||.+-|..+.+|.|.+.++..+|           +.++|++-+.+|
T Consensus        45 ~LEl~~valaE~g~L----------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~A  103 (175)
T KOG4555|consen   45 ELELKAIALAEAGDL----------DGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHhccch----------HHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHH
Confidence            345678888888887          99999999999999999999999999999999           999999999999


Q ss_pred             HHhCCCCH
Q 028992          114 VDEEPTNE  121 (200)
Q Consensus       114 l~l~P~~~  121 (200)
                      +++.-+-.
T Consensus       104 leLag~~t  111 (175)
T KOG4555|consen  104 LELAGDQT  111 (175)
T ss_pred             HHhcCccc
Confidence            99976543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.50  E-value=0.00056  Score=60.11  Aligned_cols=96  Identities=22%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .+.+|.-.|++.....|.++..++.++.+++.+|++          ++|.+.+++|+..||++++++.|+..+...+|  
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g--  249 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLG--  249 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC--
Confidence            367888899998888889999999999999999999          99999999999999999999999999999988  


Q ss_pred             cCChHHhhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992           93 TADLSEAKGDF-DKASECFQRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus        93 ~~~~~~a~~~~-d~A~~~fqkAl~l~P~~~~y~kAle~  129 (200)
                               .- +.+.+++.+.-..+|+++....--+.
T Consensus       250 ---------k~~~~~~~~l~qL~~~~p~h~~~~~~~~~  278 (290)
T PF04733_consen  250 ---------KPTEAAERYLSQLKQSNPNHPLVKDLAEK  278 (290)
T ss_dssp             ----------TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred             ---------CChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence                     66 67888999999999999865544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.50  E-value=0.00018  Score=43.56  Aligned_cols=32  Identities=31%  Similarity=0.609  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH--HhCCCC
Q 028992           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV--DEEPTN  120 (200)
Q Consensus        78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl--~l~P~~  120 (200)
                      +|.+||++|..+|           +|++|+.+|++++  ..+|++
T Consensus         1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT------------HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccC
Confidence            5789999999999           9999999999955  545543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.48  E-value=0.00043  Score=65.40  Aligned_cols=86  Identities=22%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             HhchHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--------C
Q 028992           10 RLLLSEHNRKTAEANYA--------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--------P   73 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~--------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--------P   73 (200)
                      .+..|.+|.-.|++|+.        .+|.-+.++.+||.+|...|+|          .||..++++|++|-        |
T Consensus       253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf----------~EA~~~~e~Al~I~~~~~~~~~~  322 (508)
T KOG1840|consen  253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF----------AEAEEYCERALEIYEKLLGASHP  322 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHHHHHhhccChH
Confidence            35577888888888874        5688888999999999999999          88888888888772        2


Q ss_pred             CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           74 AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        74 ~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .-+..+.+++.++...+           .+++|+.++++++++
T Consensus       323 ~v~~~l~~~~~~~~~~~-----------~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMN-----------EYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHH
Confidence            23345667888888877           999999999999986

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.0013  Score=57.28  Aligned_cols=95  Identities=15%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             hHHHHhchHHHHHHHHHHHHh--------hCCCCHH----------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYA--------KDPLDAD----------NLTRWGEALLELSQFESVSDSKKIINEAISKFEE   67 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~--------~~P~d~~----------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~   67 (200)
                      +.+=|++.|++|...|..|+-        ..|.+++          .+.|.+.|++..+.|          =++++...+
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~----------yevleh~se  255 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY----------YEVLEHCSE  255 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH----------HHHHHHHHH
Confidence            345577899999999988873        4577765          457888888888887          999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .|..+|.+.-||+-.|.++..-=           +.++|..-|+++++++|.-.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~W-----------n~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVW-----------NEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHhcChhhH
Confidence            99999999999999999998877           99999999999999999765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.42  E-value=0.0016  Score=63.12  Aligned_cols=36  Identities=11%  Similarity=-0.035  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF   48 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~   48 (200)
                      .+|+|++.++++++..|+....|..+|.++-.+++.
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i  701 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI  701 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence            556666666666666666666666666666554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.0013  Score=55.85  Aligned_cols=89  Identities=28%  Similarity=0.341  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----TLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-----a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      ++-+-.-|+-++..|.|          ++|.+.|.+||.+-|.-+.     .|-|.|.+..+++           ..+.|
T Consensus        95 ad~lK~EGN~~F~ngdy----------eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------k~e~a  153 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDY----------EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------KWESA  153 (271)
T ss_pred             HHHHHHHHHHhhhcccH----------HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------hHHHH
Confidence            34455667888887777          9999999999999998664     4557888999988           99999


Q ss_pred             HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992          107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      +.-..+||+++|.+.                     -|++.++..|.--++.-.+.
T Consensus       154 I~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  154 IEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            999999999999775                     55556666666655554444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.41  E-value=0.00062  Score=65.14  Aligned_cols=96  Identities=23%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           13 LSEHNRKTAEANYAKDPLDAD-NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~-~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      .-..|.++...|+...|...+ .+.+++.+++..+-.          .+|...+.++|.|+-..|-.++.+|++|..+. 
T Consensus       622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~----------~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~-  690 (886)
T KOG4507|consen  622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH----------LDATKLLLQALAINSSEPLTFLSLGNAYLALK-  690 (886)
T ss_pred             CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh----------ccHHHHHHHHHhhcccCchHHHhcchhHHHHh-
Confidence            345788999999999998554 578999999987665          99999999999999999999999999999988 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~  129 (200)
                                +.++|++.|+.|++++|++..++..|.+
T Consensus       691 ----------~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  691 ----------NISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             ----------hhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence                      9999999999999999999988887754

>smart00028 TPR Tetratricopeptide repeats

Probab=97.40  E-value=0.00024  Score=38.69  Aligned_cols=33  Identities=39%  Similarity=0.734  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      .+++++|.++...|           ++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~-----------~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLG-----------DYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHh-----------hHHHHHHHHHHHHccCCCC
Confidence            57899999999988           9999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.37  E-value=0.0017  Score=61.64  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +++++.+++|++..+++++..|..++.+...|.+|-..|++          ++|.+.+++|-.+|+.|-..--..+..+.
T Consensus       204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999          99999999999999999887777777777


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      ..|           +.++|.+.+..-.+.+
T Consensus       274 Ra~-----------~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAG-----------RIEEAEKTASLFTRED  292 (517)
T ss_pred             HCC-----------CHHHHHHHHHhhcCCC
Confidence            877           8888888777765554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.36  E-value=0.00035  Score=40.32  Aligned_cols=33  Identities=33%  Similarity=0.551  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      ++++.+|.++...|           ++++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence            58999999999988           9999999999999999985

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.36  E-value=0.0063  Score=51.26  Aligned_cols=146  Identities=21%  Similarity=0.283  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCccc
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      +...+.+.+.++..|. ..+++++|+++.++|++          .||+..|++++. +--+++..+..++++.+..+   
T Consensus        73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~----------~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~---  138 (251)
T COG4700          73 ERHLREATEELAIAPT-VQNRYRLANALAELGRY----------HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ---  138 (251)
T ss_pred             hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhh----------hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc---
Confidence            3344444555555565 46788888888888888          888888888874 56677777777888888777   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHHHHhcccc
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQTL  150 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~~  150 (200)
                              ++..|...+++..+.+|..-                       .++.++...| .|+...-++.-++.|+-.
T Consensus       139 --------~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         139 --------EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             --------cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence                    77777777777777766553                       3333333332 256666666666665532


Q ss_pred             CCCCCcch-hhhhcccccchhhh--hhhHHHHHHHHH
Q 028992          151 GGGSSASS-AQSSKKKSSDLKYD--IFGWAILAVGIV  184 (200)
Q Consensus       151 ~~~~~~~~-~~~~~~~~~~~~y~--~~g~~~l~~~~~  184 (200)
                       .++-..+ ...+.-+.+--||-  .-+|+=.+.+-+
T Consensus       210 -~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~  245 (251)
T COG4700         210 -REANAQYVAVVDTAKRSRPHYRKHHREWIKTANERL  245 (251)
T ss_pred             -hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence             2333333 12222222333443  788888877644

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.36  E-value=0.0044  Score=60.11  Aligned_cols=120  Identities=14%  Similarity=0.071  Sum_probs=103.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      =+|++...|.||+.|..-++..|+.+-.|..++..--..|+.          ..|...|+++..-||+++..|...-..-
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~----------~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL----------VRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch----------hhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            368899999999999999999999999999999888777766          9999999999999999999888777777


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      ...|           +.+.|....-+||+.=|++.                 ....||..+..+|-....+++.+-++
T Consensus       764 lR~g-----------n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e  830 (913)
T KOG0495|consen  764 LRAG-----------NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE  830 (913)
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            7888           99999999999999999997                 45566667777777777777666543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.35  E-value=0.00031  Score=41.17  Aligned_cols=34  Identities=29%  Similarity=0.550  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~   75 (200)
                      +++++.+|.++..+|++          ++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence            36799999999999998          99999999999999953

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.31  E-value=0.0018  Score=64.12  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=83.9

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..|.+|+....+.++++|+-.-+...-|..+.++|+.          ++|..+++..-..-+++...+--+-++|..++ 
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~----------~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-   91 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG----------DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-   91 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc----------hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-
Confidence            3799999999999999999999999999999999999          99999999888888999999999999999988 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                .+|+|..+|++++..+|+.+
T Consensus        92 ----------~~d~~~~~Ye~~~~~~P~ee  111 (932)
T KOG2053|consen   92 ----------KLDEAVHLYERANQKYPSEE  111 (932)
T ss_pred             ----------hhhHHHHHHHHHHhhCCcHH
Confidence                      99999999999999999954

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.27  E-value=0.00037  Score=48.22  Aligned_cols=55  Identities=24%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             HHHhchHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992            8 FDRLLLSEHNRKTAEANYAK---D----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~---~----P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +.+++.|++|++.+++++.+   .    |.-+.++.++|.++..+|++          ++|+..|++|+++.
T Consensus        15 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~i~   76 (78)
T PF13424_consen   15 YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALEYYQKALDIF   76 (78)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhh
Confidence            45788999999999999864   1    23366889999999999998          99999999999873

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.25  E-value=0.0061  Score=57.38  Aligned_cols=93  Identities=23%  Similarity=0.308  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCHHH------HH
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDK------AS  107 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~------A~  107 (200)
                      .++|.++.++|+.          +|||..+++.++.+|.  +-.++.+|-.++...+.. .|...-...||+      |.
T Consensus       263 rRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  263 RRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             HHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhccccCCchHH
Confidence            4555566665555          9999999999998886  456899999999887710 111111112332      55


Q ss_pred             HHHHHHHHh--------CCCC--------------HHHHHHHHhCCCChHHHHH
Q 028992          108 ECFQRAVDE--------EPTN--------------ELYQKSLEVSTKAPELHME  139 (200)
Q Consensus       108 ~~fqkAl~l--------~P~~--------------~~y~kAle~~~k~~e~~~~  139 (200)
                      =||.+|+-.        .|+.              +..++|++.||..|....+
T Consensus       332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence            566666521        1222              2577777777777765544

The molecular function of this protein is uncertain.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0034  Score=56.55  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      +++=+.+.|..|++.|.+.++.+-.|++    .++|.+.|.+.+++|          ..||.-..+|+.++|++.-++|-
T Consensus        89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny----------Rs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY----------RSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHhcCcchhhhhhh
Confidence            4556778999999999999998766554    678999999999998          99999999999999999999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      -+.|+..+.           +|++|+.+.+..+..+-+.
T Consensus       159 ~Akc~~eLe-----------~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELE-----------RFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHH-----------HHHHHHHHHhhhhhhhHHH
Confidence            999999977           9888888888877765443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.22  E-value=0.0046  Score=53.77  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.|..-.+.||+.++++.+..+...+++...|..-...++-         .+.|...||.+++.-|.+.+.|.....-+.
T Consensus        11 ~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d---------~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen   11 MRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD---------PKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45666789999999999977777888887776665553332         155999999999999999999999888888


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..+           +.+.|-..|++++..-|...
T Consensus        82 ~~~-----------d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   82 KLN-----------DINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HTT------------HHHHHHHHHHHCCTSSCHH
T ss_pred             HhC-----------cHHHHHHHHHHHHHhcCchh
Confidence            888           99999999999998766554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.22  E-value=0.0029  Score=48.90  Aligned_cols=60  Identities=30%  Similarity=0.387  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      ++..++..+...|++          ++|+..+++++.+||-+-.+|..+-.+|...|           +..+|+..|++.
T Consensus        64 ~~~~l~~~~~~~~~~----------~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~  122 (146)
T PF03704_consen   64 ALERLAEALLEAGDY----------EEALRLLQRALALDPYDEEAYRLLMRALAAQG-----------RRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHH
Confidence            334555555566666          99999999999999999999999999999999           888888877776


Q ss_pred             H
Q 028992          114 V  114 (200)
Q Consensus       114 l  114 (200)
                      .
T Consensus       123 ~  123 (146)
T PF03704_consen  123 R  123 (146)
T ss_dssp             H
T ss_pred             H
Confidence            4

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.19  E-value=0.0077  Score=50.75  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=80.6

Q ss_pred             HHHHhchHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLG   83 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG   83 (200)
                      ..-+++++.+|+..|++++. +--+|+..+..++.+++.++++          -+|...++...+-+|.  .++.+..+|
T Consensus        98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~----------A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF----------AAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            44578889999999988886 6788899999999999999888          8899999999998886  577888889


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|..+|           .+++|...|+.++..-|+..
T Consensus       168 R~laa~g-----------~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         168 RTLAAQG-----------KYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHhcC-----------CchhHHHHHHHHHHhCCCHH
Confidence            9998888           99999999999999888754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0019  Score=58.94  Aligned_cols=101  Identities=15%  Similarity=0.064  Sum_probs=85.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------------------
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------------------   53 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------------------   53 (200)
                      +|+.|++|+..|+.+...+--+++.+.+++.+.+.+|++..+..                                    
T Consensus        69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq  148 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ  148 (557)
T ss_pred             hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            78899999999999999988899999999999999988754210                                    


Q ss_pred             -c-------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           54 -S-------------KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        54 -~-------------~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                       +             ..-++|||..|.+.|.-+|+--..-.+++.||.++.           .++-+.+..+-=++.-|+
T Consensus       149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----------Yydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----------YYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----------hhhhHHHHHHHHHHhCCC
Confidence             0             012799999999999999999888889999999987           788888888877888888


Q ss_pred             CH
Q 028992          120 NE  121 (200)
Q Consensus       120 ~~  121 (200)
                      +.
T Consensus       218 St  219 (557)
T KOG3785|consen  218 ST  219 (557)
T ss_pred             cH
Confidence            76

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.11  E-value=0.0038  Score=56.99  Aligned_cols=81  Identities=23%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      ..+.-++.+++.++.+|+++..+..+|..+++.+.+          .+|-+.|+.|++.-|+..+ +..+|.++-.+|  
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----------~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g--  375 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----------GKASEALEAALKLRPSASD-YAELADALDQLG--  375 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcCCChhh-HHHHHHHHHHcC--
Confidence            455667788888999999999999999999998888          9999999999999998755 567899999999  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                               +..+|.++++.++.
T Consensus       376 ---------~~~~A~~~r~e~L~  389 (400)
T COG3071         376 ---------EPEEAEQVRREALL  389 (400)
T ss_pred             ---------ChHHHHHHHHHHHH
Confidence                     99999999999884

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.05  E-value=0.0044  Score=58.77  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      +++.+.-...++.+.|++          ++|+.+|++....-++...++-..|.+|..+|           ++++|...|
T Consensus         3 ~SE~lLY~~~il~e~g~~----------~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----------~~~eA~~~y   61 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDY----------EEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----------RKEEAEKIY   61 (517)
T ss_pred             HHHHHHHHHHHHHHCCCH----------HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence            456777778888888887          99999999999999999999999999999999           999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHh
Q 028992          111 QRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus       111 qkAl~l~P~~~~y~kAle~  129 (200)
                      +..|+.||+|..|...|+.
T Consensus        62 ~~Li~rNPdn~~Yy~~L~~   80 (517)
T PF12569_consen   62 RELIDRNPDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHCCCcHHHHHHHHH
Confidence            9999999999977766643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.03  E-value=0.0063  Score=44.57  Aligned_cols=52  Identities=23%  Similarity=0.381  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .-.++.++++++-||+++++.+.++.++...|           ++++|++.+-..++.+|++.
T Consensus         5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-----------~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    5 APDIAALEAALAANPDDLDARYALADALLAAG-----------DYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHCC-TTCC
T ss_pred             cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCcccc
Confidence            34577899999999999999999999999988           99999999999999999883

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.002  Score=55.71  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=73.3

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH---HH-HHHHhCC
Q 028992           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL---YQ-KSLEVST  131 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~---y~-kAle~~~  131 (200)
                      +.+.+||.+|-+||.++|..+..+-|.+.+|++..           +++.+..-.++|++++|+...   +. ..+-...
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-----------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-----------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-----------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            44699999999999999999999999999999987           999999999999999999872   22 3334567


Q ss_pred             CChHHHHHHHHHH--Hhccc-cCCCCCcch
Q 028992          132 KAPELHMELHKHG--INQQT-LGGGSSASS  158 (200)
Q Consensus       132 k~~e~~~~l~~~~--~~~~~-~~~~~~~~~  158 (200)
                      +.+++-..|.+++  .-++- ..+..++..
T Consensus        93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~  122 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKA  122 (284)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence            8899999999884  33332 234455554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.94  E-value=0.0015  Score=35.40  Aligned_cols=33  Identities=36%  Similarity=0.694  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~   75 (200)
                      ..+.++|.++..++++          ++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence            5788999999999999          99999999999999964

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.92  E-value=0.02  Score=50.83  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcc--cccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCCh
Q 028992           19 KTAEANYAKDPLDADNLTRWGEALLELSQFES--VSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL   96 (200)
Q Consensus        19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~--~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~   96 (200)
                      ..+++.+..+|+|.+.|..+..-.-.+-..+.  ..+.....+.-++.|++||+.||++...+..+=.+....-      
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence            55778889999999999999887777655444  2344556788999999999999999888777666666655      


Q ss_pred             HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           97 SEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        97 ~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                           +-++-.+-+++++..+|++.
T Consensus        80 -----~~~~l~~~we~~l~~~~~~~   99 (321)
T PF08424_consen   80 -----DSEKLAKKWEELLFKNPGSP   99 (321)
T ss_pred             -----CHHHHHHHHHHHHHHCCCCh
Confidence                 78888899999999999887

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.90  E-value=0.0017  Score=60.16  Aligned_cols=88  Identities=18%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             hchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH----HhCCCCHHHH-
Q 028992           11 LLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL----VIDPAKHYTL-   79 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL----~ldP~~~~a~-   79 (200)
                      |+.|.+|+..-+..+.+....      -.++.|+|++++.+|+|          +.|+++|..++    ++--.-.++- 
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f----------e~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF----------ELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc----------HhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            345555555544444443332      23678899999999998          99999998765    4444555544 


Q ss_pred             -HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           80 -WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        80 -~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                       |.|||+|+.+.           +|.+||.|++|=+.+...
T Consensus       278 cYSLgNtytll~-----------e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  278 CYSLGNTYTLLK-----------EVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             HHHhhhHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence             66999999877           999999999997776443

>PLN03077 Protein ECB2; Provisional

Probab=96.85  E-value=0.014  Score=57.66  Aligned_cols=123  Identities=8%  Similarity=0.023  Sum_probs=81.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-------------------------cccccHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-------------------------DSKKIINEAI   62 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-------------------------~~~~~~~eAi   62 (200)
                      +-|.+.+++|++.++..    +.|...|+.+...|...|+.+.+.                         ...+++++|.
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~  609 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL  609 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence            45666666776666553    456666666666666655542210                         0114458888


Q ss_pred             HHHHHHHHh---CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------
Q 028992           63 SKFEEALVI---DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------  121 (200)
Q Consensus        63 ~~le~AL~l---dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------  121 (200)
                      ..|++..+.   .|+ ...|.++..+|...|           ++++|.+.+++. ...|+-.                  
T Consensus       610 ~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G-----------~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        610 EYFHSMEEKYSITPN-LKHYACVVDLLGRAG-----------KLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             HHHHHHHHHhCCCCc-hHHHHHHHHHHHhCC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHH
Confidence            888777643   333 356778888888877           899999988875 3566654                  


Q ss_pred             --HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          122 --LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       122 --~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                        ..++.+++.|+.+..|.-|++.+...
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~  704 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADA  704 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence              34567789999999999998877543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.83  E-value=0.022  Score=52.03  Aligned_cols=100  Identities=18%  Similarity=0.056  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE-ALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~-AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .|+.-++..+..-.+    -++.+.+....|.||.+.++.       |.-++|+..+.. ....++.+++++..+|.+|-
T Consensus       156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-------gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-------GDREKALQILLPVLESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-------CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            344444444443333    455778888999999983221       222999999998 55778889999999999996


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .. |+. ......+.+++|+.+|+++.+.+|+.-
T Consensus       229 D~-~~~-s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  229 DL-FLE-SNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HH-HHH-cCccchHHHHHHHHHHHHHHcCCcccc
Confidence            53 221 122234469999999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.81  E-value=0.0074  Score=58.38  Aligned_cols=87  Identities=14%  Similarity=0.025  Sum_probs=71.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-|.+.+++|.+.+++. ...| +..+|..+..++...|++          +.|...+++.++++|++...|..|.++|.
T Consensus       472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~----------~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNL----------ELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCc----------HHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            56777888888877653 2233 456688888888887777          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      ..|           ++++|.+.+++..+..
T Consensus       540 ~~G-----------~~~~A~~v~~~m~~~g  558 (697)
T PLN03081        540 SSG-----------RQAEAAKVVETLKRKG  558 (697)
T ss_pred             hCC-----------CHHHHHHHHHHHHHcC
Confidence            999           9999999999877653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.70  E-value=0.0078  Score=40.03  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      +.+|.|+.+++.+|           +|++|..+.+++++.+|+|...+
T Consensus         2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHH
Confidence            57899999999999           99999999999999999998544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.69  E-value=0.016  Score=42.46  Aligned_cols=63  Identities=24%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcC
Q 028992           18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNAHTSCG   90 (200)
Q Consensus        18 ~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~~a~~~LG~a~~~~G   90 (200)
                      +..++++++.||+|.++.+.++.++...|++          ++|++.|-++++.||+.  ..+.-.|=.+...+|
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~----------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDY----------EEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            5667889999999999999999999999998          99999999999999886  444444444444444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.071  Score=46.89  Aligned_cols=94  Identities=19%  Similarity=0.242  Sum_probs=76.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      =||-+++-|.+..++....+  +-.+++.|+.+++.+..-      ...+++|...|++--+--|..+..+...++|+..
T Consensus       148 lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~g------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~  219 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATG------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ  219 (299)
T ss_pred             HHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH
Confidence            36667788887777766554  456788899999886543      3346999999999888677788889999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +|           +|++|....+.|+..+++++
T Consensus       220 ~~-----------~~eeAe~lL~eaL~kd~~dp  241 (299)
T KOG3081|consen  220 LG-----------RYEEAESLLEEALDKDAKDP  241 (299)
T ss_pred             hc-----------CHHHHHHHHHHHHhccCCCH
Confidence            88           99999999999999998874

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.66  E-value=0.0039  Score=56.02  Aligned_cols=69  Identities=20%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      +..|-+..|+|.+.++.|++++|+++++++..|...-...+          +-+|-.+|-+||.++|.+.+++.|....
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~----------iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE----------IVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh----------hHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            55677899999999999999999999999999987765433          4899999999999999999998887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.56  E-value=0.0023  Score=55.44  Aligned_cols=47  Identities=32%  Similarity=0.492  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           59 NEAISKFEEALVI--DPAK----HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        59 ~eAi~~le~AL~l--dP~~----~~a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      ++|+.+|++|+.+  .-++    ..++..+|.+|... |           ++++|+++|++|+++
T Consensus        91 ~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-----------d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   91 DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-----------DYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            8999999999987  2222    35778899999887 7           999999999999987

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.54  E-value=0.029  Score=54.31  Aligned_cols=123  Identities=11%  Similarity=-0.038  Sum_probs=65.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-------------------------cccccHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-------------------------DSKKIINEAI   62 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-------------------------~~~~~~~eAi   62 (200)
                      +-|.+.+++|++.+++..+   .|...|+.+..+|...|+...+.                         ...+.+++|.
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~  446 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW  446 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence            3455566666666655432   24455666666666555541100                         0012235666


Q ss_pred             HHHHHHHHhCCCC--HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 028992           63 SKFEEALVIDPAK--HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------  121 (200)
Q Consensus        63 ~~le~AL~ldP~~--~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------  121 (200)
                      ..|++..+..+-.  ...|.++..+|...|           ++++|.+.|++. ...|+..                   
T Consensus       447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G-----------~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~  514 (697)
T PLN03081        447 EIFQSMSENHRIKPRAMHYACMIELLGREG-----------LLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGR  514 (697)
T ss_pred             HHHHHHHHhcCCCCCccchHhHHHHHHhcC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            6665555432222  234556666666666           777777777653 2344432                   


Q ss_pred             -HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          122 -LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       122 -~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                       .+++.+++.|..+..|.-|.+.+.
T Consensus       515 ~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        515 LAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHHHHHhCCCCCCCcchHHHHHHHH
Confidence             344555677777777777776554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.50  E-value=0.0051  Score=35.27  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK   75 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~   75 (200)
                      ++++++|.++..+|++          ++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence            5789999999999888          99999999999999974

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.46  E-value=0.03  Score=51.23  Aligned_cols=94  Identities=21%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      -+.+++..++|.+..+.+++.+=+.-  +..+-..+ ..++.          +.=+...|+.++..|+++..+.-||..+
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l-~~~d~----------~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL-RPGDP----------EPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc-CCCCc----------hHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            35778899999999999998765443  33322222 12222          6667778999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      ...+           .|.+|..+|+.|+...|+...|.
T Consensus       339 ~k~~-----------~w~kA~~~leaAl~~~~s~~~~~  365 (400)
T COG3071         339 LKNK-----------LWGKASEALEAALKLRPSASDYA  365 (400)
T ss_pred             HHhh-----------HHHHHHHHHHHHHhcCCChhhHH
Confidence            9988           99999999999999999877443

>PRK10941 hypothetical protein; Provisional

Probab=96.43  E-value=0.02  Score=50.09  Aligned_cols=65  Identities=22%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      .++=.++.+.+++          +.|+.+.+..+.++|+++.-+...|.+|..+|           .+..|..-++.-|+
T Consensus       185 ~nLK~~~~~~~~~----------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl~  243 (269)
T PRK10941        185 DTLKAALMEEKQM----------ELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHHHHcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHH
Confidence            4555566666666          99999999999999999999999999999999           99999999999999


Q ss_pred             hCCCCH
Q 028992          116 EEPTNE  121 (200)
Q Consensus       116 l~P~~~  121 (200)
                      .-|+++
T Consensus       244 ~~P~dp  249 (269)
T PRK10941        244 QCPEDP  249 (269)
T ss_pred             hCCCch
Confidence            999887

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.42  E-value=0.019  Score=53.68  Aligned_cols=89  Identities=24%  Similarity=0.233  Sum_probs=76.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT   87 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~LG~a~~   87 (200)
                      ...+.|.+..+......|+.+--+..-|..+...|+.          ++|++.|++++.....    ++-.+|.+|-++.
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~----------~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~  316 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL----------EEAIESFERAIESQSEWKQLHHLCYFELAWCHM  316 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence            4567788889999999999999999999999998888          9999999998853333    4567899999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .++           +|++|.++|.+.++.+.-+.
T Consensus       317 ~~~-----------~w~~A~~~f~~L~~~s~WSk  339 (468)
T PF10300_consen  317 FQH-----------DWEEAAEYFLRLLKESKWSK  339 (468)
T ss_pred             HHc-----------hHHHHHHHHHHHHhccccHH
Confidence            988           99999999999999876654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.41  E-value=0.0087  Score=55.59  Aligned_cols=85  Identities=21%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             hchHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC------CHHH
Q 028992           11 LLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA------KHYT   78 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------~~~a   78 (200)
                      ++.||.|.+.|.++|.+.      .-.++..+-+|+.|..+..+          +.||..+++=|.|.-.      ...+
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~Ra  317 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------QKAITYHQRHLAIAQELEDRIGELRA  317 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            678999999999988643      23566789999999988787          9999999888877443      4468


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .|.||+++..+|           .-++|+.+.++.++.
T Consensus       318 cwSLgna~~alg-----------~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  318 CWSLGNAFNALG-----------EHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHhhh-----------hHHHHHHHHHHHHHH
Confidence            899999999999           999999999988765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.38  E-value=0.033  Score=48.36  Aligned_cols=76  Identities=28%  Similarity=0.300  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      -++.|++-|...+.-|++          ++|+..|+......|..+   .+...++-++++-+           ++++|+
T Consensus        33 p~~~LY~~g~~~L~~gn~----------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-----------~y~~A~   91 (254)
T COG4105          33 PASELYNEGLTELQKGNY----------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-----------EYDLAL   91 (254)
T ss_pred             CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-----------cHHHHH
Confidence            467899999999998888          999999999999988865   68889999999987           999999


Q ss_pred             HHHHHHHHhCCCCH-----HHHHHH
Q 028992          108 ECFQRAVDEEPTNE-----LYQKSL  127 (200)
Q Consensus       108 ~~fqkAl~l~P~~~-----~y~kAl  127 (200)
                      .+.++=+.+.|+++     .|-+.|
T Consensus        92 ~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          92 AYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHhCCCCCChhHHHHHHHH
Confidence            99999999999997     455555

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.33  E-value=0.023  Score=49.16  Aligned_cols=89  Identities=18%  Similarity=0.142  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CH---HH
Q 028992           12 LLSEHNRKTAEANYAKDPL--D----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KH---YT   78 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~--d----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~---~a   78 (200)
                      +.+++|++.|++|.+..-.  .    .+++.+.|.++..++++          ++|++.|++.....-+    ..   +.
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHH
Confidence            6789999999998875321  2    45678899999998888          9999999998875221    22   34


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +...+.+++..|           +.-.|...|++....+|...
T Consensus       199 ~l~a~l~~L~~~-----------D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  199 FLKAILCHLAMG-----------DYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHTT------------HHHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCC
Confidence            567788888888           99999999999999999775

>PLN03077 Protein ECB2; Provisional

Probab=96.27  E-value=0.035  Score=55.01  Aligned_cols=91  Identities=11%  Similarity=0.007  Sum_probs=63.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.|.+.+++|.+.+++. ...|+ +.+|..+-.++...++.          +.|....+++++++|++...|..|+++|.
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~----------e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV----------ELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence            34555566666555542 23333 44444444444443333          78888889999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHH----hCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVD----EEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~~~  121 (200)
                      ..|           ++++|.+..+..-+    .+|+..
T Consensus       703 ~~g-----------~~~~a~~vr~~M~~~g~~k~~g~s  729 (857)
T PLN03077        703 DAG-----------KWDEVARVRKTMRENGLTVDPGCS  729 (857)
T ss_pred             HCC-----------ChHHHHHHHHHHHHcCCCCCCCcc
Confidence            988           99999999987754    356543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.046  Score=52.46  Aligned_cols=96  Identities=19%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc-----------------------ccccHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD-----------------------SKKIINEAISKFEE   67 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~-----------------------~~~~~~eAi~~le~   67 (200)
                      -..|++|.+.+.+.+...|+|.+++...-++++.+++|+....                       ..++.++|+.+++ 
T Consensus        25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-  103 (652)
T KOG2376|consen   25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-  103 (652)
T ss_pred             chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence            3479999999999999999999999999999999888754210                       1245677777777 


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                        -+|+.+..++-..+.+++.+|           +|++|.+.|+..++-+-++
T Consensus       104 --~~~~~~~~ll~L~AQvlYrl~-----------~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen  104 --GLDRLDDKLLELRAQVLYRLE-----------RYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             --cccccchHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCch
Confidence              567777778888888888888           9999999999987665444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.26  E-value=0.012  Score=35.31  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .++.+||.+|..+|           ++++|..+++++++.
T Consensus         3 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQG-----------RYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence            57889999999999           999999999999976

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.15  E-value=0.073  Score=50.35  Aligned_cols=84  Identities=11%  Similarity=0.004  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChH
Q 028992           18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS   97 (200)
Q Consensus        18 ~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~   97 (200)
                      ...|+++...-+.|...|.++-.-....+.+          .+--..|.++|..+|++++.|..-+.=.+..+       
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~----------~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-------  153 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTY----------GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-------  153 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-------
Confidence            4568889999999999999987766554434          88888999999999999999877666555543       


Q ss_pred             HhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           98 EAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        98 ~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                         -+++.|...|.++|+.+|+++
T Consensus       154 ---~ni~saRalflrgLR~npdsp  174 (568)
T KOG2396|consen  154 ---LNIESARALFLRGLRFNPDSP  174 (568)
T ss_pred             ---cchHHHHHHHHHHhhcCCCCh
Confidence               259999999999999999998

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.072  Score=46.86  Aligned_cols=92  Identities=22%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      +.+|.-.|+.--.+-|-.+..++..+++.+.++++          ++|.+.+++||.-++++++++.|+-.+-...|   
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G---  255 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAKDPETLANLIVLALHLG---  255 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---
Confidence            45666677777777888999999999999999999          99999999999999999999999999888888   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k  125 (200)
                             .+-+--..+..+.....|+++....
T Consensus       256 -------kd~~~~~r~l~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  256 -------KDAEVTERNLSQLKLSHPEHPFVKH  280 (299)
T ss_pred             -------CChHHHHHHHHHHHhcCCcchHHHH
Confidence                   1333345566677777888775443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.11  E-value=0.0078  Score=36.22  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      ++.++|.++..+|++          ++|+++|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence            478999999999999          99999999966553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.06  E-value=0.16  Score=44.18  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             hchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGN   84 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~~LG~   84 (200)
                      -+.+++|.+.+++....+|.+   .++...++-++...+++          ++|+...++=+++.|++++   ++|..|.
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y----------~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY----------DLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            368999999999999999885   46788889999988888          9999999999999999885   5667787


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +++..   .++...-...-.+|+.-|+..|+.-|++.
T Consensus       117 s~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         117 SYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            76442   23333333366789999999999999997

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.02  E-value=0.015  Score=52.30  Aligned_cols=53  Identities=25%  Similarity=0.503  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+.|-..|+.|+.++|++++++..+|.......           +.=+|-.||-+|+.++|.|.
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-----------~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHN-----------EIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-----------hhHhhhhhhheeeeeCCCch
Confidence            399999999999999999999999999987766           89999999999999999997

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.01  E-value=0.03  Score=37.21  Aligned_cols=41  Identities=17%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG   83 (200)
                      +.++.++.++.+++++          ++|....+.+|+++|++..+.-...
T Consensus         2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            5789999999999999          9999999999999999999765443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.017  Score=51.85  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=71.4

Q ss_pred             hchHHHHHHH-------HHHHHhhCC--CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           11 LLLSEHNRKT-------AEANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus        11 l~~fe~A~~~-------~e~a~~~~P--~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      -...+.|+++       ++-.++.-|  ++++..++.|..+++.|++          ++|+.+|+.|++..--++..-|+
T Consensus       114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy----------EaAvqkFqaAlqvsGyqpllAYn  183 (459)
T KOG4340|consen  114 VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY----------EAAVQKFQAALQVSGYQPLLAYN  183 (459)
T ss_pred             HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH----------HHHHHHHHHHHhhcCCCchhHHH
Confidence            3345555554       233445556  7999999999999998888          99999999999999999999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH----hCCCC
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPTN  120 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~~  120 (200)
                      ++.++++.|           +++.|+++....++    ..|+.
T Consensus       184 iALaHy~~~-----------qyasALk~iSEIieRG~r~HPEl  215 (459)
T KOG4340|consen  184 LALAHYSSR-----------QYASALKHISEIIERGIRQHPEL  215 (459)
T ss_pred             HHHHHHhhh-----------hHHHHHHHHHHHHHhhhhcCCcc
Confidence            999999988           99999987766554    45554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.043  Score=49.31  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=51.5

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      |-.+|+++++...--.+.+|.+--.+..+|-||....+|          .+|-.||++.-.+.|+.....+.-+..+
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f----------~~AA~CYeQL~ql~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF----------ALAAECYEQLGQLHPELEQYRLYQAQSL   88 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999998888          7777777777777776554444433333

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.77  E-value=0.019  Score=53.63  Aligned_cols=72  Identities=18%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------HHH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQ  124 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------~y~  124 (200)
                      +.|+..|-+||+++|+.+..+-+.+.++...+           +|..|+.-+-+|++++|.+.              .|+
T Consensus        21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e-----------~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVE-----------SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             HHHHHHHHHHHhcCCcceeeechhhhhheeec-----------hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            99999999999999999999999999999988           99999999999999999997              344


Q ss_pred             HH-------HHhCCCChHHHHHHH
Q 028992          125 KS-------LEVSTKAPELHMELH  141 (200)
Q Consensus       125 kA-------le~~~k~~e~~~~l~  141 (200)
                      +|       ..+.|..|.+--.++
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHHHHHHH
Confidence            44       467899998887777

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=0.15  Score=49.04  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccc--------c--------HHHHHHH----HHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKK--------I--------INEAISK----FEEAL   69 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~--------~--------~~eAi~~----le~AL   69 (200)
                      |+...++|++.++   -+++.+...+...|-++.++++|+.+.+...        .        +..+...    ..+.+
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            4555666666665   4677777788888888888888844322110        0        0111111    22233


Q ss_pred             HhCCC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           70 VIDPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        70 ~ldP~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .+.|. ..+-+||.+.++...|           +|.+|++.+++|+++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~g-----------ky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENG-----------KYNQAIELLEKALRI  204 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHH
Confidence            34444 5577889999998888           999999999999553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.27  Score=43.72  Aligned_cols=101  Identities=15%  Similarity=0.136  Sum_probs=79.9

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------ccccH---HHHH------------HHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------SKKII---NEAI------------SKF   65 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------~~~~~---~eAi------------~~l   65 (200)
                      ....|.+|...+..++..+|++.++...++.+|+..|+.+....         ..+..   ...|            ..+
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l  225 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL  225 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            34578999999999999999999999999999999998854211         01111   1112            345


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        66 e~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++.+.-||+++++-+.|+..|...|           +.++|.+.+-..++.|-+..
T Consensus       226 ~~~~aadPdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         226 QRRLAADPDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccc
Confidence            6667779999999999999999988           99999999999998876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.65  E-value=0.03  Score=48.44  Aligned_cols=52  Identities=21%  Similarity=0.475  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +-|.+.|.+||++-|+....|+.+|....+.|           +++.|.+.|++.+++||++.
T Consensus        12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag-----------~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976          12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAG-----------EFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-----------cHHHHHHHHHHHHcCCcccc
Confidence            88899999999999999999999999999988           99999999999999999986

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.63  E-value=0.22  Score=51.22  Aligned_cols=40  Identities=3%  Similarity=-0.126  Sum_probs=21.5

Q ss_pred             HHhchHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCC
Q 028992            9 DRLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQF   48 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~   48 (200)
                      -|.+.+++|++.++...+.+ +.+...++.+..+|.+.|++
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence            34455555555555555554 33555555555555555554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.62  E-value=0.073  Score=52.51  Aligned_cols=85  Identities=16%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             hchHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYTL   79 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~-----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~a~   79 (200)
                      .+.+++|...+++++...|...     .++..+|.++...|++          ++|+..+++++.+....      ..++
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~----------~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL----------ARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            4578999999999988655432     3456788888888888          99999999999774432      2355


Q ss_pred             HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .++|.++...|           ++++|..+++++++.
T Consensus       535 ~~la~~~~~~G-----------~~~~A~~~~~~al~~  560 (903)
T PRK04841        535 LQQSEILFAQG-----------FLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence            67899999988           999999999999886

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.085  Score=48.42  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=87.3

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~d~-~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      +||=.-..|+.|+...+-....+-..- +.-.++|-|++.+|++          ++|+..|+-+..-+.-+.+.+.+|+.
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY----------~~Al~~Y~~~~~~~~~~~el~vnLAc   99 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY----------EEALNVYTFLMNKDDAPAELGVNLAC   99 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH----------HHHHHHHHHHhccCCCCcccchhHHH
Confidence            456566689999999888776655433 4556689999999998          99999999999888888899999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHhC--CCChHHHHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVS--TKAPELHMELHKHG  144 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----~y~kAle~~--~k~~e~~~~l~~~~  144 (200)
                      +++.+|           .|.+|...-.+    -|+++     .+.-|..++  .+-..+|.+|+...
T Consensus       100 c~FyLg-----------~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~  151 (557)
T KOG3785|consen  100 CKFYLG-----------QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL  151 (557)
T ss_pred             HHHHHH-----------HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH
Confidence            999999           99999776555    47777     455555664  23366777777655

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.45  E-value=0.13  Score=39.41  Aligned_cols=98  Identities=15%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCccccccccc-HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKI-INEAISKFEEALVIDPAKHYTLWSLG   83 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~-~~eAi~~le~AL~ldP~~~~a~~~LG   83 (200)
                      +=+-+.+-+|++..+..+..++++.   ..+..-|.++..++.--.-++.+-. +.-++++|.++..+.|..+..++.||
T Consensus         6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la   85 (111)
T PF04781_consen    6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA   85 (111)
T ss_pred             HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence            3455788899999999999999988   5677788888877653222333322 47899999999999999999999999


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .=+-+--           .|++++.-.++++..
T Consensus        86 ~~l~s~~-----------~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   86 SQLGSVK-----------YYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHhhhHH-----------HHHHHHHHHHHHhcc
Confidence            8876644           788888888888765

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.43  E-value=0.27  Score=50.58  Aligned_cols=91  Identities=14%  Similarity=0.112  Sum_probs=52.6

Q ss_pred             hchHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-PAKHYTLWSLGNA   85 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P~~~~a~~~LG~a   85 (200)
                      .+.+++|.+.++.....    .| |...+..+-.+|.+.|++          ++|++.|++..+.+ +.+..+|..+..+
T Consensus       555 ~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l----------deA~elf~~M~e~gi~p~~~tynsLI~a  623 (1060)
T PLN03218        555 SGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV----------DRAKEVYQMIHEYNIKGTPEVYTIAVNS  623 (1060)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence            34455555555544331    22 233444444455554444          77777777776665 3455666667777


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHh--CCCCHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTNELY  123 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l--~P~~~~y  123 (200)
                      |...|           ++++|+..|++..+.  .|+...|
T Consensus       624 y~k~G-----------~~deAl~lf~eM~~~Gv~PD~~Ty  652 (1060)
T PLN03218        624 CSQKG-----------DWDFALSIYDDMKKKGVKPDEVFF  652 (1060)
T ss_pred             HHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHH
Confidence            77766           777777777777765  5665433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.066  Score=46.89  Aligned_cols=93  Identities=19%  Similarity=0.269  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------CCCCHH----------HHHHHHHHHHhcCccc
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------DPAKHY----------TLWSLGNAHTSCGFLT   93 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------dP~~~~----------a~~~LG~a~~~~G~l~   93 (200)
                      ..++..-|+-|+.+|+|          +||+++|++|+-+        .|..++          .+.|.+.|+...|   
T Consensus       178 v~~l~q~GN~lfk~~~y----------kEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~---  244 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRY----------KEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE---  244 (329)
T ss_pred             hHHHHHhhhhhhhhccH----------HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH---
Confidence            34677889999999988          8888888887644        566555          4568888888877   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHh--CCCChHHHHHHHHHHH
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNE--LYQKSLEV--STKAPELHMELHKHGI  145 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~--~y~kAle~--~~k~~e~~~~l~~~~~  145 (200)
                              +|-+++++....+..+|+|.  .|++|-.-  .=+..|+...+.+.+-
T Consensus       245 --------e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~  292 (329)
T KOG0545|consen  245 --------EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE  292 (329)
T ss_pred             --------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence                    99999999999999999997  55544321  2233444444444443

>PRK10941 hypothetical protein; Provisional

Probab=95.41  E-value=0.085  Score=46.12  Aligned_cols=68  Identities=16%  Similarity=0.048  Sum_probs=60.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      +-+...|+.|++..+..+.++|+|+.-+--.|.+|.+++.+          ..|+.-|+.-++.-|+++++-...-.+
T Consensus       191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            45667899999999999999999999999999999999999          999999999999999999986554433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.33  E-value=0.054  Score=49.73  Aligned_cols=93  Identities=22%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-----
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----   77 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~-----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-----   77 (200)
                      .||+-.|.+++.+....+.+--.++     ..+..+|++.+.++.|          +.+++.||.|+++.-++.|     
T Consensus        93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f----------q~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF----------QKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH----------HHHHHHHHHHHHHhhccCCceeee
Confidence            3555566666655555555443333     5777789999999998          9999999999998665554     


Q ss_pred             -HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           78 -TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        78 -a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                       ++..||..+..+.           ++++|+-+-.+|.++--+..
T Consensus       163 qvcv~Lgslf~~l~-----------D~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLK-----------DYEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             ehhhhHHHHHHHHH-----------hhhHHhhhhHhHHHHHHhcC
Confidence             4567899998877           99999999999998865443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.26  E-value=0.16  Score=46.51  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             hchHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           11 LLLSEHNRKTAEA-NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        11 l~~fe~A~~~~e~-a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      -+.-++|+..... .....+.+++.+..+|.+|-.+-. ..........+.||..|.++.+++|+... =.|++.++...
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~  272 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-ESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLA  272 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-HcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHc
Confidence            6677999999888 667788899999999999987522 11112334479999999999999976433 35666665555


Q ss_pred             C
Q 028992           90 G   90 (200)
Q Consensus        90 G   90 (200)
                      |
T Consensus       273 g  273 (374)
T PF13281_consen  273 G  273 (374)
T ss_pred             C
Confidence            5

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.16  E-value=0.25  Score=42.93  Aligned_cols=95  Identities=22%  Similarity=0.289  Sum_probs=73.1

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH--HHHHH-HHHHHHh
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH--YTLWS-LGNAHTS   88 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~--~a~~~-LG~a~~~   88 (200)
                      +..+.|++.+|.+++.-|.+.+.|.....-|+.+++.          +.|...||+++..-|.+.  ..+|. .-.-=..
T Consensus        50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~  119 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESK  119 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            4566699999999999999999999999999988776          999999999998877766  33343 4333455


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .|           +.+...+..+|+.+.-|+........
T Consensus       120 ~G-----------dl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  120 YG-----------DLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             HS------------HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             cC-----------CHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            67           99999999999999999976444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.16  E-value=0.03  Score=48.48  Aligned_cols=97  Identities=21%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +..+.|.+.+.+++++-|.+..-|+++|.-....|++          +.|...|++.|++||.++..--   .=+..+|+
T Consensus         9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~----------daAa~a~~~~L~ldp~D~~gaa---~kLa~lg~   75 (287)
T COG4976           9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF----------DAAAAAYEEVLELDPEDHGGAA---LKLAVLGR   75 (287)
T ss_pred             CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH----------HHHHHHHHHHHcCCcccccchh---hhHHhhcC
Confidence            4578899999999999999999999999999999998          9999999999999999986311   11233442


Q ss_pred             c-cCChHH---hhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 L-TADLSE---AKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l-~~~~~~---a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      - +|..+.   ...-||.=.+-|+..+-.+=++.
T Consensus        76 ~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~  109 (287)
T COG4976          76 GETPEKPPSAYVETLFDQYAERFDHILVDKLGYS  109 (287)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            1 222221   23346666666666665554443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.07  E-value=0.14  Score=43.18  Aligned_cols=99  Identities=19%  Similarity=0.260  Sum_probs=68.2

Q ss_pred             HHHHhchHHHHHHHHHHHHh----hCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-----
Q 028992            7 DFDRLLLSEHNRKTAEANYA----KDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-----   74 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~----~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-----   74 (200)
                      ||....-+++|++.|.-|+-    ....+   +..+.+++-.+..+++-   ..-+..+..|...|++|++....     
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            34445567778777776663    22222   44556666666655542   22345579999999999977543     


Q ss_pred             -CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        75 -~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                       ....+|.+|..+..+|           ++++|+.+|.+.+...-.
T Consensus       163 ~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             hHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCCCC
Confidence             2467889999999999           999999999999976433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.04  E-value=0.14  Score=48.93  Aligned_cols=105  Identities=14%  Similarity=0.022  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      ...++..|.+++..-|+....+.+.+.+|.+.+=.       +..-.|+.-...|+++||....+|+.|+.++..++   
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-------~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~---  459 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-------GDSYLALRDCHVALRLNPSIQKAHFRLARALNELT---  459 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh---
Confidence            34678889999999999999999999999875432       22367888888999999999999999999999999   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHH
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL  136 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~  136 (200)
                              ++.+|+.|-..+....|.+..-.-.++..++++..
T Consensus       460 --------r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a  494 (758)
T KOG1310|consen  460 --------RYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA  494 (758)
T ss_pred             --------hHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence                    99999999999999999777666666666666654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.02  E-value=0.26  Score=38.69  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHHHhhCC------------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992           12 LLSEHNRKTAEANYAKDP------------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL   79 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P------------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~   79 (200)
                      +.|++|...+.++++..-            -|+-++..|+.++..+|+|.   ++..-.+.|+..|.+==+++-+....|
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~---e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYD---ECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHhhccccccccchhH
Confidence            379999999999987541            25668899999999999991   111122334444444445566655443


Q ss_pred             ----HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           80 ----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        80 ----~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                          ++.+.++..+|           +.++|++.|+++.+.
T Consensus       100 IaaVfsra~Al~~~G-----------r~~eA~~~fr~agEM  129 (144)
T PF12968_consen  100 IAAVFSRAVALEGLG-----------RKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHH
Confidence                56788888888           999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.92  E-value=0.051  Score=32.41  Aligned_cols=30  Identities=33%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +.++.++|.+|..+|++          ++|+..+++++++
T Consensus         2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRY----------EEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHH
Confidence            46789999999999999          9999999999976

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.71  E-value=0.2  Score=49.40  Aligned_cols=67  Identities=19%  Similarity=0.102  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID------PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld------P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      +..+|.++...|++          ++|+..|++++...      +....++..+|.+|...|           +.++|..
T Consensus       694 ~~~~a~~~~~~g~~----------~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G-----------~~~~A~~  752 (903)
T PRK04841        694 WRNIARAQILLGQF----------DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG-----------RKSEAQR  752 (903)
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence            45788888888888          99999999999862      223457889999999999           9999999


Q ss_pred             HHHHHHHhCCCCHH
Q 028992          109 CFQRAVDEEPTNEL  122 (200)
Q Consensus       109 ~fqkAl~l~P~~~~  122 (200)
                      ++++|+++......
T Consensus       753 ~L~~Al~la~~~g~  766 (903)
T PRK04841        753 VLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHHhCccch
Confidence            99999999866553

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.60  E-value=0.17  Score=38.71  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        39 G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      +..++..|++          -+|++..+..+...+++..   .+..=|.++..++.-+-+..-..-.+-.|++||.+++.
T Consensus         3 A~~~~~rGnh----------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~   72 (111)
T PF04781_consen    3 AKDYFARGNH----------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE   72 (111)
T ss_pred             HHHHHHccCH----------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence            4556777777          9999999999999999884   45556777766654443333333456678888888888


Q ss_pred             hCCCCH
Q 028992          116 EEPTNE  121 (200)
Q Consensus       116 l~P~~~  121 (200)
                      +.|+.+
T Consensus        73 Lsp~~A   78 (111)
T PF04781_consen   73 LSPDSA   78 (111)
T ss_pred             cChhHH
Confidence            888763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.57  E-value=0.25  Score=49.48  Aligned_cols=72  Identities=24%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ..|++..++|.+..+.....-++|-..+--+-.+|.++++.          ++|+.+|++++.-+|+ -+-++.+=++|.
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayv  121 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL----------DEAVHLYERANQKYPS-EELLYHLFMAYV  121 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999          9999999999999999 788888888887


Q ss_pred             hcC
Q 028992           88 SCG   90 (200)
Q Consensus        88 ~~G   90 (200)
                      .-+
T Consensus       122 R~~  124 (932)
T KOG2053|consen  122 REK  124 (932)
T ss_pred             HHH
Confidence            755

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.43  Score=42.41  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH--
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC--  109 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~--  109 (200)
                      .+.-..-+..+...+++          .+|...|..++..+|++.++...|+.+|...|           +++.|...  
T Consensus       134 ~e~~~~~~~~~~~~e~~----------~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-----------~~e~A~~iL~  192 (304)
T COG3118         134 EEEALAEAKELIEAEDF----------GEAAPLLKQALQAAPENSEAKLLLAECLLAAG-----------DVEAAQAILA  192 (304)
T ss_pred             HHHHHHHhhhhhhccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-----------ChHHHHHHHH
Confidence            33444555566666777          99999999999999999999999999999988           44443333  


Q ss_pred             --------------------HHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          110 --------------------FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       110 --------------------fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                                          ..+|-. -|+-...+..+..+|+++++.+.++.++...+-
T Consensus       193 ~lP~~~~~~~~~~l~a~i~ll~qaa~-~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~  251 (304)
T COG3118         193 ALPLQAQDKAAHGLQAQIELLEQAAA-TPEIQDLQRRLAADPDDVEAALALADQLHLVGR  251 (304)
T ss_pred             hCcccchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                333222 345557788888999999999999998875553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.38  E-value=0.21  Score=38.31  Aligned_cols=51  Identities=20%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL   69 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL   69 (200)
                      .+.+.+++|+..+++++..+|.|-.++..+-.+|...|+.          .+|+..|++..
T Consensus        73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~  123 (146)
T PF03704_consen   73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYR  123 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHH
Confidence            4567899999999999999999999999999999999998          78887777653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.32  E-value=0.24  Score=45.61  Aligned_cols=90  Identities=21%  Similarity=0.166  Sum_probs=67.6

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC----
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPL----D------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID----   72 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~----d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld----   72 (200)
                      =|-++..+++|+-...+|+++--.    |      .-+++.++++|..+|+.          -+|.++.++|.++.    
T Consensus       171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAMECCEEAMKLALQHG  240 (518)
T ss_pred             HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHhC
Confidence            367788888888888887765422    2      34678899999998888          88999999998873    


Q ss_pred             --CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           73 --PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        73 --P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                        |.....+.++|.+|...|           +.|.|..-|+.|...-
T Consensus       241 dra~~arc~~~~aDIyR~~g-----------d~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRG-----------DLERAFRRYEQAMGTM  276 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcc-----------cHhHHHHHHHHHHHHH
Confidence              345566788999999988           7777777777766543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.29  E-value=0.88  Score=40.36  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG   83 (200)
                      -++....|.-+..+++|++.||++...+..+=.+..+....          ++.....++++..+|+++..|...=
T Consensus        41 ~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~----------~~l~~~we~~l~~~~~~~~LW~~yL  106 (321)
T PF08424_consen   41 AERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS----------EKLAKKWEELLFKNPGSPELWREYL  106 (321)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCChHHHHHHH
Confidence            35667788999999999999999998887766666555444          7778899999999999999886543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.85  E-value=0.56  Score=49.28  Aligned_cols=73  Identities=11%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a   85 (200)
                      +++-..|.+|.+.++..++.--+...+|..||..|+...+-          +.|.+.+++||+.-|+  +.+..--.+..
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----------~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----------EAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----------HHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            34444566677777777776667777888888888776654          5555566666666665  44444444444


Q ss_pred             HHhcC
Q 028992           86 HTSCG   90 (200)
Q Consensus        86 ~~~~G   90 (200)
                      -+++|
T Consensus      1610 EFk~G 1614 (1710)
T KOG1070|consen 1610 EFKYG 1614 (1710)
T ss_pred             HhhcC
Confidence            44444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=0.44  Score=45.87  Aligned_cols=88  Identities=20%  Similarity=0.099  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHH-HHHHHhCCCCHHHHHHH------HHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF-EEALVIDPAKHYTLWSL------GNA   85 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~l-e~AL~ldP~~~~a~~~L------G~a   85 (200)
                      .+..+.-.....+..||+++.+..++|.++...+..          ..++..+ +.++...|++......+      |..
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  151 (620)
T COG3914          82 DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY  151 (620)
T ss_pred             cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH
Confidence            345666778889999999999999999999886665          5555544 55999999999988777      555


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ...+|           +..++....++++++.|.+.
T Consensus       152 ~~~l~-----------~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         152 LKLLG-----------RTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             HHHhc-----------cHHHHHHHHHHHHHhhhhhh
Confidence            55555           99999999999999999987

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.75  E-value=1.1  Score=43.97  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=82.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL   82 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L   82 (200)
                      =|+..|+.+++.|+..+.--|.|-.      ..-++..||+.+.|.          +.|++.+++|-+.||.++-.-..+
T Consensus       365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL----------D~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL----------DNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHhhccccHHHHHHH
Confidence            3667889999999999887777654      457888899998888          999999999999999999877766


Q ss_pred             HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992           83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        83 G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      -.+...-|           .-++|+.+..+....--+-..=---+....+-|..-.-+..+++
T Consensus       435 ~~~~~~E~-----------~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~  486 (872)
T KOG4814|consen  435 LQSFLAED-----------KSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLM  486 (872)
T ss_pred             HHHHHHhc-----------chHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHH
Confidence            66666655           88999999888765533321111112223455655555665554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.28  E-value=0.28  Score=41.33  Aligned_cols=50  Identities=16%  Similarity=0.078  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        61 Ai~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |+.+|.+|+.+.|+....|..||.++...|           +.=.|+-+|-|++-..--++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-----------~~l~avy~y~Rsl~~~~Pf~   50 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-----------DDLDAVYYYIRSLAVRIPFP   50 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT------------HHHHHHHHHHHHSSSB--H
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcccc-----------chHHHHHHHHHHHhcCCCcH
Confidence            678999999999999999999999999988           99999999999996643334

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.18  E-value=0.91  Score=36.89  Aligned_cols=68  Identities=13%  Similarity=-0.007  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      ..+++...+...-.+.|+.++..+--|..++..+++          .+|+..|+++..-.|..+.+--.++.|+..+|
T Consensus        25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            567788888888899999999999999999999998          99999999999999999998889999998877

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.05  E-value=0.92  Score=39.53  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc----ccccc------------HHHHHHHHHHHHHhCCCCH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----DSKKI------------INEAISKFEEALVIDPAKH   76 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~----~~~~~------------~~eAi~~le~AL~ldP~~~   76 (200)
                      .||+|.+.+.++-...- =+.+|..-|.++++..+++--.    |+-..            -++|+.++++|++|--+-.
T Consensus        29 k~eeAadl~~~Aan~yk-laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYK-LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence            57888888877633221 1345556666666655433211    11122            3556666666665533321


Q ss_pred             H------HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           77 Y------TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        77 ~------a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .      -+..+|.+|.+-          ..++++|+.+|++|-+.-.+.+
T Consensus       108 rf~~aAk~~~~iaEiyEsd----------l~d~ekaI~~YE~Aae~yk~ee  148 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESD----------LQDFEKAIAHYEQAAEYYKGEE  148 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhh----------HHHHHHHHHHHHHHHHHHcchh
Confidence            1      122344444331          1378899999998887655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.93  E-value=1.5  Score=41.83  Aligned_cols=77  Identities=21%  Similarity=0.352  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------
Q 028992           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------  121 (200)
Q Consensus        57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------  121 (200)
                      .++.....|++-|+-.|.+-.+|...|..-+++|           +.|.|-..|.-|+...--+.               
T Consensus       452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-----------dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~  520 (677)
T KOG1915|consen  452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-----------DTDRARAIFELAISQPALDMPELLWKAYIDFEIEE  520 (677)
T ss_pred             hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence            3477777888888888888888888888888888           88888888888887653222               


Q ss_pred             --------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          122 --------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       122 --------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                              +|++-|+.++..+ .+..+++--.
T Consensus       521 ~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  521 GEFEKARALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             chHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence                    7777777776665 6666665443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.47  Score=42.08  Aligned_cols=70  Identities=20%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      ...++-+.+.+++..++|          -+|...|.+.++.||.++.+-.+-+.|+..+|           +..+|++-.
T Consensus       251 ~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg-----------~l~DAiK~~  309 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVANNNKALCLLYLG-----------KLKDALKQL  309 (366)
T ss_pred             hHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhhhchHHHHHHHHH-----------HHHHHHHHH
Confidence            344445555555555555          89999999999999999999999999999988           999999999


Q ss_pred             HHHHHhCCCCH
Q 028992          111 QRAVDEEPTNE  121 (200)
Q Consensus       111 qkAl~l~P~~~  121 (200)
                      +.++...|...
T Consensus       310 e~~~~~~P~~~  320 (366)
T KOG2796|consen  310 EAMVQQDPRHY  320 (366)
T ss_pred             HHHhccCCccc
Confidence            99999999876

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.79  E-value=0.85  Score=39.44  Aligned_cols=133  Identities=14%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc--ccHHHHHHH----HHHHHHhCCCCH
Q 028992            3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK--KIINEAISK----FEEALVIDPAKH   76 (200)
Q Consensus         3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~--~~~~eAi~~----le~AL~ldP~~~   76 (200)
                      ++.++.+|..+...|++.. +.-...-.|++.|..+|..|.+.+++..+..+.  +.-.++...    ..-..+-+|...
T Consensus        62 ~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~  140 (260)
T PF04190_consen   62 FPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA  140 (260)
T ss_dssp             S-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred             CCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence            4556677889999999998 322333359999999999999987763321110  111222222    233446789999


Q ss_pred             HHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHHHh----CCC-----------CH-------------------
Q 028992           77 YTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAVDE----EPT-----------NE-------------------  121 (200)
Q Consensus        77 ~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l----~P~-----------~~-------------------  121 (200)
                      +.+...+.. |...+           +...|...+..-++.    +|+           .+                   
T Consensus       141 dlfi~RaVL~yL~l~-----------n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~  209 (260)
T PF04190_consen  141 DLFIARAVLQYLCLG-----------NLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL  209 (260)
T ss_dssp             HHHHHHHHHHHHHTT-----------BHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH
T ss_pred             hHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH
Confidence            999988887 45567           999888877666655    443           12                   


Q ss_pred             ------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          122 ------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       122 ------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                            .|+..|+.+|...+.-..||..+++.
T Consensus       210 F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi  241 (260)
T PF04190_consen  210 FKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred             HHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence                  66666666677777777788887763

; PDB: 3LKU_E 2WPV_G.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.57  E-value=0.46  Score=28.92  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH--HHHHHHhCCCC
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC--FQRAVDEEPTN  120 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~--fqkAl~l~P~~  120 (200)
                      ++.++.+|..+...|           ++++|++.  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~-----------ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKG-----------KYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHhcccC
Confidence            356788899999988           99999999  55998998875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.57  E-value=0.46  Score=34.48  Aligned_cols=51  Identities=18%  Similarity=0.341  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           58 INEAISKFEEALVIDPA----K-----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~----~-----~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      +.+|++.+.+.+..-..    .     ..++.+++.++...|           ++++|+..+++||++-..
T Consensus        14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHH
Confidence            37887777776655222    2     457788999999988           999999999999987443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=1.4  Score=42.50  Aligned_cols=114  Identities=16%  Similarity=0.075  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           17 NRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        17 A~~~~e~a~~~~P~d~~~l~~l--G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      ++..+..-...+|.+++.+...  ...+..++..          ..++-.++.++..||++..++.+||.++...|    
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~----  115 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADS----------TLAFLAKRIPLSVNPENCPAVQNLAAALELDG----  115 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccc----------hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----
Confidence            3334444445788888875433  4444444444          78899999999999999999999999987754    


Q ss_pred             ChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           95 DLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                            ..+.-+..+-+.|....|+|.                           ...+++++.|+.++.-..+......|
T Consensus       116 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         116 ------LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             ------hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence                  256666677777999999886                           23344466777766655555554444


Q ss_pred             ccc
Q 028992          148 QTL  150 (200)
Q Consensus       148 ~~~  150 (200)
                      ...
T Consensus       190 cs~  192 (620)
T COG3914         190 CSW  192 (620)
T ss_pred             ccc
Confidence            433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.17  E-value=1.6  Score=41.51  Aligned_cols=106  Identities=19%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-dP~~~~a~~~LG~   84 (200)
                      ..|++..++|++.++..++.+|.  .-.++.++-.+|++++++          .|+...+.+==.+ -|+  .|-+|...
T Consensus       269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y----------ad~q~lL~kYdDi~lpk--SAti~YTa  336 (539)
T PF04184_consen  269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY----------ADVQALLAKYDDISLPK--SATICYTA  336 (539)
T ss_pred             HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH----------HHHHHHHHHhccccCCc--hHHHHHHH
Confidence            35789999999999999998887  455899999999999888          7776666652222 133  34556555


Q ss_pred             HHHhcC----cccCChHHhhc---CHHHHHHHHHHHHHhCCCCHHHHH
Q 028992           85 AHTSCG----FLTADLSEAKG---DFDKASECFQRAVDEEPTNELYQK  125 (200)
Q Consensus        85 a~~~~G----~l~~~~~~a~~---~~d~A~~~fqkAl~l~P~~~~y~k  125 (200)
                      ++.+..    .+.|+.....|   ---.|++.+.||++.||..+.|.-
T Consensus       337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            654421    12233222222   123488999999999999997763

The molecular function of this protein is uncertain.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=0.56  Score=41.64  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHh
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTS   88 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~   88 (200)
                      .|..|...+.+.+..||.++.+-++.+.|++.+|+.          .+|+...+.++.++|...   ...+||...|..
T Consensus       267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL  335 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL  335 (366)
T ss_pred             chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence            567788888889999999999999999999999998          999999999999999854   466778777644

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.87  E-value=0.29  Score=44.21  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCcccCChHHhhcCHH
Q 028992           26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFD  104 (200)
Q Consensus        26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~-LG~a~~~~G~l~~~~~~a~~~~d  104 (200)
                      ..-|+|+..|.....-...          ++++.+--..|.+++..+|.+.+.|.. -..-+...+           +++
T Consensus       101 nkff~D~k~w~~y~~Y~~k----------~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----------ni~  159 (435)
T COG5191         101 NKFFNDPKIWSQYAAYVIK----------KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----------NIE  159 (435)
T ss_pred             hcCCCCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----------cHH
Confidence            3448888888776655544          345688889999999999999998753 445567777           999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 028992          105 KASECFQRAVDEEPTNE  121 (200)
Q Consensus       105 ~A~~~fqkAl~l~P~~~  121 (200)
                      .+...|+++++.||+++
T Consensus       160 s~Ra~f~~glR~N~~~p  176 (435)
T COG5191         160 SSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             HHHHHHHhhhccCCCCc
Confidence            99999999999999998

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.82  E-value=0.074  Score=48.18  Aligned_cols=53  Identities=15%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +++||+.|-.|++++|.....|-..++++..+.           ...+|+.-+..|+.++|+.+
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence            399999999999999999999999999999988           99999999999999999997

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.43  E-value=0.79  Score=39.67  Aligned_cols=86  Identities=15%  Similarity=0.093  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhcCCcccc---cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChH------HhhcCHH
Q 028992           34 NLTRWGEALLELSQFESVS---DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS------EAKGDFD  104 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~---~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~------~a~~~~d  104 (200)
                      ..-..+.+++.+|++....   ......++++..|++|++++|+...+|+.+|..+...-...+...      .......
T Consensus       247 ~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
T PF02259_consen  247 SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLE  326 (352)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence            3445566666666652222   123556999999999999999999999999998876432222111      2334556


Q ss_pred             HHHHHHHHHHHhCCC
Q 028992          105 KASECFQRAVDEEPT  119 (200)
Q Consensus       105 ~A~~~fqkAl~l~P~  119 (200)
                      .|+.+|-+|+...++
T Consensus       327 ~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  327 QAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            799999999999988

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=91.36  E-value=0.63  Score=42.25  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             hhCCC-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCcccCChHHhh
Q 028992           26 AKDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAHTSCGFLTADLSEAK  100 (200)
Q Consensus        26 ~~~P~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~----a~~~LG~a~~~~G~l~~~~~~a~  100 (200)
                      +-.|+ .++++---|+-|+...+|          .+|+++|-+.|+-+-.+++    .|.|.+-|...+|          
T Consensus        74 E~ep~E~Aen~KeeGN~~fK~Kry----------k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~----------  133 (390)
T KOG0551|consen   74 EGEPHEQAENYKEEGNEYFKEKRY----------KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG----------  133 (390)
T ss_pred             cCChHHHHHHHHHHhHHHHHhhhH----------HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH----------
Confidence            33444 456666778888877777          9999999999988555444    4568999999988          


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH
Q 028992          101 GDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus       101 ~~~d~A~~~fqkAl~l~P~~~  121 (200)
                       ||..|+.-..+|+.++|.+.
T Consensus       134 -NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen  134 -NYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             -HHHHHHHHHHHHHhcCcchh
Confidence             99999999999999999997

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.31  E-value=1.5  Score=44.77  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=79.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      |=-.+.|+.|+..|++.-.--|+-.   ++.++.|..+++...-+.++   ..+++|+..|++ |.--|.-|--|..-+.
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  560 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP---RDFTQALSEFSY-LHGGVGAPLEYLGKAL  560 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh---HHHHHHHHHHHH-hcCCCCCchHHHhHHH
Confidence            3345679999999999888888754   58899999999876543222   457899999987 5566777777766777


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +|..+|           +|++=++||.-|++--|+++
T Consensus       561 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        561 VYQRLG-----------EYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHHhh-----------hHHHHHHHHHHHHHhcCCCC
Confidence            788877           99999999999999999987

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.16  E-value=0.34  Score=29.99  Aligned_cols=30  Identities=43%  Similarity=0.555  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      ++++..+|.+-++.++|          ++|+.-|+++|+|
T Consensus         1 Adv~~~Lgeisle~e~f----------~qA~~D~~~aL~i   30 (38)
T PF10516_consen    1 ADVYDLLGEISLENENF----------EQAIEDYEKALEI   30 (38)
T ss_pred             CcHHHHHHHHHHHhccH----------HHHHHHHHHHHHH
Confidence            36789999999999999          9999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.14  E-value=2.6  Score=35.61  Aligned_cols=92  Identities=12%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHT   87 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~   87 (200)
                      .|++|...++.++. +|.|..    +-.|++.+++.++++          ++|+..+...-  ++.-.. .--..|.++.
T Consensus       104 ~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t~~--~~~w~~~~~elrGDill  170 (207)
T COG2976         104 NLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKA----------DAALKTLDTIK--EESWAAIVAELRGDILL  170 (207)
T ss_pred             cHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhccc--cccHHHHHHHHhhhHHH
Confidence            45666666665543 233333    447888899888888          78777665421  111111 2235788999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV  129 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~  129 (200)
                      ..|           +-++|...|++|++.++ ++.-+..++|
T Consensus       171 ~kg-----------~k~~Ar~ay~kAl~~~~-s~~~~~~lqm  200 (207)
T COG2976         171 AKG-----------DKQEARAAYEKALESDA-SPAAREILQM  200 (207)
T ss_pred             HcC-----------chHHHHHHHHHHHHccC-ChHHHHHHHh
Confidence            988           99999999999999984 4455555554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.09  E-value=1.8  Score=41.31  Aligned_cols=90  Identities=18%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .+.+..||..+++|+..+-.+...|...+.+-....+.          .-|...+.+|+.+-|.-...|+..-..--.+|
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v----------NhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV----------NHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            34556678888888888877888887777776654443          77777777788777777666666555555566


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                 |..-|-+.|++=++..|+-.
T Consensus       156 -----------Ni~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  156 -----------NIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             -----------ccHHHHHHHHHHHcCCCcHH
Confidence                       88888888888888888765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=91.03  E-value=0.98  Score=42.96  Aligned_cols=61  Identities=20%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL   82 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L   82 (200)
                      .+.+--+.+.+++..+|++++.|..-+.-.++.+.-         ++.|...|.++|+.+|+.+..|.+.
T Consensus       120 ~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n---------i~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  120 TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN---------IESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---------hHHHHHHHHHHhhcCCCChHHHHHH
Confidence            366777889999999999999999988888886551         3899999999999999999988764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.86  E-value=0.2  Score=47.56  Aligned_cols=67  Identities=24%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHhcCcccCC
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------IDP---------AKHYTLWSLGNAHTSCGFLTAD   95 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~---------ldP---------~~~~a~~~LG~a~~~~G~l~~~   95 (200)
                      .|+|+|.+.+.++.+          .-++-.|.+||+         +.|         +.-+++||.|..|...|     
T Consensus       285 f~NNlGcIh~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----  349 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----  349 (696)
T ss_pred             eecCcceEeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----
Confidence            357999999998888          888888899886         122         24578999999999999     


Q ss_pred             hHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           96 LSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        96 ~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                            +.-.|.+||++|+..--.|+
T Consensus       350 ------rPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  350 ------RPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             ------CcHHHHHHHHHHHHHHhcCc
Confidence                  99999999999998765554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.67  E-value=1.3  Score=41.83  Aligned_cols=60  Identities=18%  Similarity=0.137  Sum_probs=49.1

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHhCC
Q 028992           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEVST  131 (200)
Q Consensus        57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAle~~~  131 (200)
                      .+.++.-.-.=..+++| .+.++..+|.++....           +|++|-.|++.   +-|++.    .-+||+.++.
T Consensus       477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-----------~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-----------RYQEAWEYLQK---LPPNERMRDSKVQKALALCQ  540 (549)
T ss_pred             cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-----------hHHHHHHHHHh---CCCchhhHHHHHHHHHHHHH
Confidence            34888888888889999 9999999999999877           99999999987   777665    4457766553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.64  E-value=1.8  Score=39.75  Aligned_cols=88  Identities=13%  Similarity=0.035  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHh
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKH---YTLWSLGNAHTS   88 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-dP~~~---~a~~~LG~a~~~   88 (200)
                      .+-+|...-++.+...|.|.-++-.--.+++.+|+.          ..-...+++.+-- ||+-|   .++-.++..+..
T Consensus       118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            344555666778888888888777777777777775          4444555666644 66663   233334455566


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .|           -|++|.+.-++|+++||.+.
T Consensus       188 ~g-----------~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  188 CG-----------IYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             hc-----------cchhHHHHHHhhccCCCcch
Confidence            66           88888888888888888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.53  E-value=3  Score=44.12  Aligned_cols=97  Identities=14%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           14 SEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      -++|++...+|++.-|.  +.+.....+..-+..|+.          +.+...|+..|.-+|+.-|.|.-+-..-..+| 
T Consensus      1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~- 1648 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG- 1648 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccC-
Confidence            46789999999999998  888888888888888888          99999999999999999999988888888888 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhC--CCCH--HHHHHHHhCC
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEE--PTNE--LYQKSLEVST  131 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~--P~~~--~y~kAle~~~  131 (200)
                                +.+.+...|+|++.+.  |...  .|+|-|++..
T Consensus      1649 ----------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1649 ----------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred             ----------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence                      9999999999999875  4443  7888887753

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.29  E-value=1.4  Score=38.76  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++.|..+.++.+.++|+++.-+--.|.+|..+|           .+.-|++-++..++.-|+.+
T Consensus       197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCch
Confidence            399999999999999999999999999999999           99999999999999999886

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.11  E-value=3.7  Score=38.09  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-Ccccc-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~-~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      .+=+++++.-...+..||+...+|+-.-.++.+.-- .+.-. +-...+++-+...+.+|++||+.-.+|+.+.-++.+.
T Consensus        43 ~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~  122 (421)
T KOG0529|consen   43 EYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKN  122 (421)
T ss_pred             ccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC
Confidence            344677888888889999999999776666654321 11111 1122467778889999999999999999999998876


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSL  127 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---~y~kAl  127 (200)
                      +         .-++..=+....++++.||.|-   .||+-+
T Consensus       123 p---------~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV  154 (421)
T KOG0529|consen  123 P---------HSDWNTELQLCEKALKQDPRNFHAWHYRRFV  154 (421)
T ss_pred             C---------CchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence            5         2268889999999999999986   566554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.92  E-value=0.57  Score=28.98  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      ++|..||.+-...+           +|++|+.-|++|+++.
T Consensus         2 dv~~~Lgeisle~e-----------~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENE-----------NFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence            57788899888866           9999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.91  E-value=5.5  Score=33.90  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      +.|+..+.++....  ++++..++|.+|..-      .......++|+..|++|-+...  ..+++++| ++...|.-+|
T Consensus       172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~  240 (292)
T COG0790         172 KKALYLYRKAAELG--NPDAQLLLGRMYEKG------LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK  240 (292)
T ss_pred             HhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence            57888888888777  889999999777642      2334556999999999999988  89999999 6666663333


Q ss_pred             C----hHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           95 D----LSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        95 ~----~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .    ......+...|..+++++....+...
T Consensus       241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         241 KAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            2    11234488889999999888876654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.80  E-value=0.44  Score=26.48  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      .++++||.++..+|           ++++|...+++
T Consensus         2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQG-----------DPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence            57889999999999           99999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.79  E-value=1.3  Score=37.35  Aligned_cols=62  Identities=6%  Similarity=-0.055  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992           17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus        17 A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      |++.|..|..+.|.+...++.+|.+....++.          -+|+..|-+++-..--.+.+.-||...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999998777          899999999997755568899999988877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.77  E-value=4.4  Score=32.94  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .++...|...--+.|+.++.-..-|..+...|           ++++|+..|+...+..|..+
T Consensus        27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-----------~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-----------DWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCCh
Confidence            89999999988999999999999999999988           99999999999888888776

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.51  E-value=2.3  Score=39.07  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=44.4

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-----YTLWSLGN   84 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-----~a~~~LG~   84 (200)
                      -.++|.+|.+.+.+++++||.|.=+.+..+-++.-.+++          +|+.+..++--.. =+..     .-||.-+.
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al  255 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKTEDD-WRQSWMLASHNYWHTAL  255 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhcccc-hhhhhHHHhhhhHHHHH
Confidence            345566666666666666666665555555555555555          5665554443211 1111     12344444


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                      .|..-+           +|++|++.|.+-+
T Consensus       256 ~~iE~a-----------eye~aleIyD~ei  274 (491)
T KOG2610|consen  256 FHIEGA-----------EYEKALEIYDREI  274 (491)
T ss_pred             hhhccc-----------chhHHHHHHHHHH
Confidence            444444           7777777776655

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.92  E-value=3  Score=39.87  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-------IDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-------ldP~~~~a~~~LG~a~~   87 (200)
                      .++.+.++.+  .+-.+.....++|.+++.-+.     ......+.|+..|+.|.+       ..  ++.+.+.+|.+|.
T Consensus       229 ~~a~~~~~~~--a~~g~~~a~~~~g~~y~~G~~-----g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~  299 (552)
T KOG1550|consen  229 SEAFKYYREA--AKLGHSEAQYALGICYLAGTY-----GVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYL  299 (552)
T ss_pred             hHHHHHHHHH--HhhcchHHHHHHHHHHhhccc-----cccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHh
Confidence            3455555543  345788899999999986322     234456999999998877       33  5668899999997


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ... ..+..     +.+.|+.+|.+|.+....+..|.-+.
T Consensus       300 ~g~-~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~  333 (552)
T KOG1550|consen  300 QGL-GVEKI-----DYEKALKLYTKAAELGNPDAQYLLGV  333 (552)
T ss_pred             cCC-CCccc-----cHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            743 11111     88999999999999988887555444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=88.86  E-value=0.58  Score=42.39  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTR-WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~-lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      -+.+.+.+--..+.+++.++|+|++.|.- -.--+...+++          +-+...|.++|+.||+.|..|+.
T Consensus       118 ~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani----------~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         118 IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI----------ESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH----------HHHHHHHHhhhccCCCCchHHHH
Confidence            34557777788899999999999999976 44456666777          99999999999999999998764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.68  E-value=6.4  Score=33.95  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---------
Q 028992            9 DRLLLSEHNRKTAEANYAKDP----LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---------   75 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P----~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---------   75 (200)
                      .+-+.|+-|.....++...++    ..+.+.+.-+..+...|+.          .+|+..+++.+......         
T Consensus       157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------~~Ai~~L~~~~~~~~~~~~~~~~~~~  226 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------EEAIQKLRELLKCRLSKNIDSISNAE  226 (352)
T ss_pred             HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhccccccHHH
Confidence            345567777777777766552    2466666677777777776          89999998888721111         


Q ss_pred             ------------------HHHHHHHHHHHHhcCcccCCh--HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           76 ------------------HYTLWSLGNAHTSCGFLTADL--SEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        76 ------------------~~a~~~LG~a~~~~G~l~~~~--~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                        ..-.-..+.++...|......  ....+.+++++..|++|+.++|++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence                              111123344444443111000  1123577788888888888877765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.67  E-value=2.4  Score=37.22  Aligned_cols=68  Identities=16%  Similarity=0.071  Sum_probs=59.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      -+....+.|....++.+.++|+|+.-+.-.|.+|..++.+          .-|++-++..++.-|+++.+-.......
T Consensus       192 ~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         192 LRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3445788899999999999999999999999999999998          8999999999999999999866544433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.53  E-value=5.3  Score=39.38  Aligned_cols=40  Identities=13%  Similarity=0.032  Sum_probs=21.7

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF   48 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~   48 (200)
                      |.++-|+..+..|++.+.+---.|++..|.|.-|-+..-|
T Consensus       488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf  527 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF  527 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence            3445555555555555555555555555555555443333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.52  E-value=10  Score=32.18  Aligned_cols=92  Identities=15%  Similarity=0.029  Sum_probs=65.8

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      ...+..+.+.++.+-.  -.++...+.+|..+..-..      .....++|+..|+  ...+..++.+.++||..|..-.
T Consensus        54 ~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~g------v~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~  123 (292)
T COG0790          54 PPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKG------VSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGR  123 (292)
T ss_pred             cccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccC------ccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCC
Confidence            3467777777777655  3445778888888865322      2344688999999  5566788999999999997621


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                            . ...+..+|..+|++|.+..-.
T Consensus       124 ------g-v~~d~~~A~~~~~~Aa~~g~~  145 (292)
T COG0790         124 ------G-VPLDLVKALKYYEKAAKLGNV  145 (292)
T ss_pred             ------C-cccCHHHHHHHHHHHHHcCCh
Confidence                  1 233889999999999988443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.45  E-value=3.3  Score=34.89  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      +++..+.+|.-|..           ..-+.++..|-++|++.+.    +++++..|+++|..+|           +++.|
T Consensus       140 t~elq~aLAtyY~k-----------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~-----------~~e~A  197 (203)
T PF11207_consen  140 TAELQYALATYYTK-----------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK-----------NYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc-----------chhhh
Confidence            55555555555543           2238999999999998655    4899999999999988           99887


Q ss_pred             H
Q 028992          107 S  107 (200)
Q Consensus       107 ~  107 (200)
                      -
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            5

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.08  E-value=1.3  Score=32.02  Aligned_cols=58  Identities=16%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPL---------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY   77 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~---------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~   77 (200)
                      |.+.|..|++.+.+.+..-..         ...++.++|.+....|++          ++|+..+++|+++-....|
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLARENGD   76 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHCC
Confidence            566788888777777754322         235667888888888888          9999999999998655444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.61  E-value=14  Score=33.51  Aligned_cols=86  Identities=16%  Similarity=0.238  Sum_probs=62.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------CCC------------CHH---HH
Q 028992           22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------DPA------------KHY---TL   79 (200)
Q Consensus        22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------dP~------------~~~---a~   79 (200)
                      -..+..+|-+.+.+..++.++..+|++   ..+...++.|+-.|++++.-       ++.            |-.   ++
T Consensus        30 ~~ll~~~PyHidtLlqls~v~~~~gd~---~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal  106 (360)
T PF04910_consen   30 INLLQKNPYHIDTLLQLSEVYRQQGDH---AQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL  106 (360)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence            344688999999999999999998877   23344567777777765532       222            222   34


Q ss_pred             HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC-CH
Q 028992           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE  121 (200)
Q Consensus        80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~-~~  121 (200)
                      +.....+...|           -+.-|.++.+-.+.+||. ++
T Consensus       107 ~r~i~~L~~RG-----------~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen  107 FRYIQSLGRRG-----------CWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             HHHHHHHHhcC-----------cHHHHHHHHHHHHhcCCCCCc
Confidence            44555566666           999999999999999999 54

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.61  E-value=3.2  Score=36.64  Aligned_cols=64  Identities=20%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq  111 (200)
                      ..+++.+..++...+++          +.+++.+++.+.++|-+-.+|..+=.+|...|           +...|+..|+
T Consensus       153 ~~~l~~lae~~~~~~~~----------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-----------~~~~ai~~y~  211 (280)
T COG3629         153 IKALTKLAEALIACGRA----------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-----------RQSAAIRAYR  211 (280)
T ss_pred             HHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-----------CchHHHHHHH
Confidence            34556666777666666          99999999999999999999999999999988           8888888888


Q ss_pred             HHHHh
Q 028992          112 RAVDE  116 (200)
Q Consensus       112 kAl~l  116 (200)
                      +.-..
T Consensus       212 ~l~~~  216 (280)
T COG3629         212 QLKKT  216 (280)
T ss_pred             HHHHH
Confidence            76653

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=87.50  E-value=0.24  Score=47.67  Aligned_cols=35  Identities=37%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             hhhcccccchhhhhhhHHHHHHHHHHHHHHhhcCC
Q 028992          160 QSSKKKSSDLKYDIFGWAILAVGIVAWVGMANSRI  194 (200)
Q Consensus       160 ~~~~~~~~~~~y~~~g~~~l~~~~~~~~~~~~~~~  194 (200)
                      ..|+||+||=+|-|.|=||-|.+||++||||-.-+
T Consensus       501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~  535 (576)
T PTZ00441        501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV  535 (576)
T ss_pred             ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence            45677889999999999999999999999997433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.51  E-value=16  Score=36.14  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      -+++-.-.||++++.-|.+-.+|+..=.+-...-+  ........++.--.||++++..--+-|.+|.+.+..++.+|  
T Consensus        41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk--~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~--  116 (835)
T KOG2047|consen   41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVK--HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG--  116 (835)
T ss_pred             ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence            34566778999999999999999876544333222  22233456788888999999988888999999999999999  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                               +...--..|.+||.-=|--.                       .||+-|.++|++.+=|.++-
T Consensus       117 ---------~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L  179 (835)
T KOG2047|consen  117 ---------LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL  179 (835)
T ss_pred             ---------hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                     77777777777776554332                       67777778777766655543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.08  E-value=5.4  Score=32.23  Aligned_cols=70  Identities=17%  Similarity=0.007  Sum_probs=61.1

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      ...++++.......-.+.|+.++..+--|..++..+++          .||+..|++..+-.|..+.+--.++.|+..+|
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            34566777777777889999999999999999999998          99999999999998898988888888888877

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.98  E-value=11  Score=33.13  Aligned_cols=63  Identities=19%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhC
Q 028992           59 NEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS  130 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~  130 (200)
                      .|++..|++|..+--.+   ..+-..|+.+-..+.         ..+.|+|++.|++++.+=-+...-+.+.++.
T Consensus        88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le---------nv~Pd~AlqlYqralavve~~dr~~ma~el~  153 (308)
T KOG1585|consen   88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALE---------NVKPDDALQLYQRALAVVEEDDRDQMAFELY  153 (308)
T ss_pred             HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            77777777776652111   112223333322211         2368888888888887765555555554443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.87  E-value=4.5  Score=35.86  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      ..|+...+.++.+||.+-++|.-.-.++..++..         +.+-.+.+.+.++-+|++-.+|-..-.+...+|    
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d---------L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~----  126 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD---------LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG----  126 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc----
Confidence            4577788888999999999998888888876543         467778888888999999888888777777766    


Q ss_pred             ChHHhhcCHH-HHHHHHHHHHHhCCCC
Q 028992           95 DLSEAKGDFD-KASECFQRAVDEEPTN  120 (200)
Q Consensus        95 ~~~~a~~~~d-~A~~~fqkAl~l~P~~  120 (200)
                             +.. .=+++.++.++.|..|
T Consensus       127 -------d~s~rELef~~~~l~~DaKN  146 (318)
T KOG0530|consen  127 -------DPSFRELEFTKLMLDDDAKN  146 (318)
T ss_pred             -------CcccchHHHHHHHHhccccc
Confidence                   433 4455555555554444

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.82  E-value=2.1  Score=23.56  Aligned_cols=29  Identities=24%  Similarity=0.197  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEA   41 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~a   41 (200)
                      .++.+++.+++++...|.+++.|.....-
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            47889999999999999999999877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=84.93  E-value=0.82  Score=41.62  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      .+++.+-+.++..          ..|+..-..+++.+++...+||-.|.++...-           ++++|++..+.|..
T Consensus       279 ~n~~~~~lk~~~~----------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-----------~~~~a~~~~~~a~~  337 (372)
T KOG0546|consen  279 RNLAAVGLKVKGR----------GGARFRTNEALRDERSKTKAHYRRGQAYKLLK-----------NYDEALEDLKKAKQ  337 (372)
T ss_pred             cchHHhcccccCC----------CcceeccccccccChhhCcHHHHHHhHHHhhh-----------chhhhHHHHHHhhc
Confidence            4455555555554          67777777888899999999999999999977           99999999999999


Q ss_pred             hCCCCHHHHHHHHhCC
Q 028992          116 EEPTNELYQKSLEVST  131 (200)
Q Consensus       116 l~P~~~~y~kAle~~~  131 (200)
                      .+|++....++++...
T Consensus       338 ~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  338 KAPNDKAIEEELENVR  353 (372)
T ss_pred             cCcchHHHHHHHHHhh
Confidence            9999998888776543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.91  E-value=31  Score=32.47  Aligned_cols=104  Identities=20%  Similarity=0.093  Sum_probs=77.6

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------------c----------------c
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------S----------------K   55 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------------~----------------~   55 (200)
                      +.+|++-.+.|+.+++.++.+-|.-+=++...=..++..|+......               .                .
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld  242 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD  242 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence            56899999999999999999999876555444444444444422100               0                0


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..-..|...-.+++++.|+...+-..-+.+|+..|           +..++-..++.+.+.+|.-.
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~-----------~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDG-----------NLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc-----------chhhhhhHHHHHHhcCCChH
Confidence            01245666677889999999998888888999988           99999999999999999766

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.87  E-value=3.8  Score=39.29  Aligned_cols=48  Identities=15%  Similarity=0.037  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ..-++++|.|..|+..|+.          ..|.+||.+|...--.+|..|.-|+.+..
T Consensus       333 ks~eilYNcG~~~Lh~grP----------l~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSGRP----------LLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             cchhhHHhhhHHHHhcCCc----------HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3568999999999999999          99999999999999999999999998764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.79  E-value=1.3  Score=43.08  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             HHhchHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcCCcccccccccHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 028992            9 DRLLLSE-HNRKTAEANYAKDPLDADNLTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALVIDPAKH--YTLWSLGN   84 (200)
Q Consensus         9 ~~l~~fe-~A~~~~e~a~~~~P~d~~~l~~lG~al~~-l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~--~a~~~LG~   84 (200)
                      +++++|- .-...+-.+++.+|.+.-.+ +++..|-+ .|+.          .+|+.|+..|+-..|.+.  -++..||.
T Consensus       189 ~~~~r~~~~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~----------~~A~~Ca~~a~hf~~~h~kdi~lLSlaT  257 (886)
T KOG4507|consen  189 KRLGRSIDDIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEP----------YQAVECAMRALHFSSRHNKDIALLSLAT  257 (886)
T ss_pred             hhhhhhHHHHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCCh----------hhhhHHHHHHhhhCCcccccchhhhHHH
Confidence            4555443 34445667777788777555 44455544 3444          888888888887766643  46677888


Q ss_pred             HHHhcCccc------------------CCh-----HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           85 AHTSCGFLT------------------ADL-----SEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        85 a~~~~G~l~------------------~~~-----~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++...||+.                  |+.     ..-+++|.....||..|.+.+|...
T Consensus       258 iL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  258 VLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             HHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence            888877621                  111     1234578888999999999999886

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=84.54  E-value=13  Score=33.38  Aligned_cols=47  Identities=21%  Similarity=0.132  Sum_probs=42.2

Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      ...+-+|+..+|.++..+|.|+.....|-.+|..+|           -.+.|...|+.
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG-----------~~~~A~~~~~~  242 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG-----------AGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHh
Confidence            345689999999999999999999999999999999           88888888764

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=84.37  E-value=19  Score=33.76  Aligned_cols=53  Identities=26%  Similarity=0.361  Sum_probs=47.6

Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      ....+.|...+++.++.-|+..-.++..|.++...|           +.++|+++|++|+....
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g-----------~~~~Ai~~~~~a~~~q~  298 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG-----------NLEEAIESFERAIESQS  298 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc-----------CHHHHHHHHHHhccchh
Confidence            445699999999999999999999999999999988           99999999999995443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.05  E-value=8.5  Score=36.79  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYA-------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus        13 ~fe~A~~~~e~a~~-------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      .++.|+..++.+.+       ..  ++.+.+.+|.+|..-.-.    +-. ..+.|+..|.+|-+..  ++++.+.||.+
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~----~~~-d~~~A~~~~~~aA~~g--~~~a~~~lg~~  334 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGV----EKI-DYEKALKLYTKAAELG--NPDAQYLLGVL  334 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCC----ccc-cHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence            45666666666654       33  566788899998863322    111 5588999999888874  55677899999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      +..-.        ...++..|.++|.+|...-=..+.|+.++
T Consensus       335 ~~~g~--------~~~d~~~A~~yy~~Aa~~G~~~A~~~la~  368 (552)
T KOG1550|consen  335 YETGT--------KERDYRRAFEYYSLAAKAGHILAIYRLAL  368 (552)
T ss_pred             HHcCC--------ccccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            86621        12467888888888887655555444443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.46  E-value=8.1  Score=27.89  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH---HHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGN---AHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~---a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      ++|+.+.++||+..++.++-+..||.   +|...|           .|.+.+++--+=+++
T Consensus        23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-----------kyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-----------KYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            99999999999999998886665554   566667           899988887766654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.35  E-value=3.9  Score=32.72  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHH
Q 028992           15 EHNRKTAEANYA-KDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT   78 (200)
Q Consensus        15 e~A~~~~e~a~~-~~P~-d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a   78 (200)
                      .+.+..++..++ -+|. +-+.++.++..+.+++++          +.++..++..|+.+|++..+
T Consensus        52 ~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   52 QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHHHHHHHHhhCCCcHHH
Confidence            345667777775 5555 667899999999999988          99999999999999999986

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.71  E-value=4.6  Score=36.32  Aligned_cols=58  Identities=29%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      .+...+..+++.|.+          .+|++..++++.+||-+...+..|-++|...|           +--.|++.|++
T Consensus       281 llgkva~~yle~g~~----------neAi~l~qr~ltldpL~e~~nk~lm~~la~~g-----------D~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKP----------NEAIQLHQRALTLDPLSEQDNKGLMASLATLG-----------DEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCCh----------HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc-----------cchhhhhHHHH
Confidence            445566677777777          99999999999999999999999999999988           55555555554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.39  E-value=5.3  Score=34.61  Aligned_cols=59  Identities=20%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSL  127 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAl  127 (200)
                      +.+||...++-++-+|.+......|-..|...|           ++++|..-++-+-+++|++.    +|+..+
T Consensus        17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaG-----------dw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455          17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-----------DWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-----------hHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            499999999999999999999999999999988           99999999999999999986    666555

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.71  E-value=5.1  Score=33.72  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             hhHHHHhchHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            5 QSDFDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         5 ~~~~~~l~~fe~A~~~~e~a~~~~P~------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      .++-.-..++..|++.|+++++....      +..+++.+|....++|++          ++|+..|.+++..
T Consensus       132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~----------~eA~~~fs~vi~~  194 (214)
T PF09986_consen  132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY----------DEAKRWFSRVIGS  194 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHcC
Confidence            34556678999999999999976633      356888999999999999          9999999998865

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=81.65  E-value=15  Score=27.73  Aligned_cols=39  Identities=15%  Similarity=0.055  Sum_probs=32.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS   46 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~   46 (200)
                      |+.....+......+..+..++.++..++.+...+.+..
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~   55 (140)
T smart00299       17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD   55 (140)
T ss_pred             HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence            344456888899999999999999999999999998753

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.64  E-value=1.5  Score=24.21  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEE   67 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~   67 (200)
                      .+++.+|.++...|++          ++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~----------~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDP----------DEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence            4678999999999998          999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=80.97  E-value=8.4  Score=37.26  Aligned_cols=76  Identities=14%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhc
Q 028992           22 EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKG  101 (200)
Q Consensus        22 e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~  101 (200)
                      ++-++.||.|.+.|+.+-.-+.-  +         -+++..+.||+-+..-|..+.+|...........           
T Consensus        10 ~~rie~nP~di~sw~~lire~qt--~---------~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk-----------   67 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQT--Q---------PIDKVRETYEQLVNVFPSSPRAWKLYIERELASK-----------   67 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHcc--C---------CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-----------
Confidence            67789999999999876544322  1         2499999999999999999999987666655544           


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 028992          102 DFDKASECFQRAVDEEPT  119 (200)
Q Consensus       102 ~~d~A~~~fqkAl~l~P~  119 (200)
                      +|+.-.+.|.|||..-=+
T Consensus        68 dfe~VEkLF~RCLvkvLn   85 (656)
T KOG1914|consen   68 DFESVEKLFSRCLVKVLN   85 (656)
T ss_pred             hHHHHHHHHHHHHHHHhh
Confidence            999999999999865433

>smart00671 SEL1 Sel1-like repeats

Probab=80.30  E-value=3.7  Score=23.40  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      ++.+.||..|.. |.      ....+.++|+.+|++|.+..
T Consensus         2 ~a~~~lg~~~~~-G~------g~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        2 EAQYNLGQMYEY-GL------GVKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             HHHHHHHHHHHc-CC------CCCcCHHHHHHHHHHHHHcc
Confidence            577889998854 31      12458999999999998754

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.22  E-value=14  Score=29.85  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           54 SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        54 ~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ...+.++.++..++.++..| ++.++.+++.++...|           +.++|....+++..+-|.+ .|.++.
T Consensus       123 ~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~-~~~~~~  183 (193)
T PF11846_consen  123 DPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPAD-EFAAAQ  183 (193)
T ss_pred             CHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcH-HHHHHH
Confidence            34556788888899999999 6788999999999999           9999999999999999933 344433

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.16  E-value=5.1  Score=21.85  Aligned_cols=27  Identities=22%  Similarity=0.146  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992           58 INEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus        58 ~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+.|...|++++...|.+++.|.....
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            488999999999999999998877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.06  E-value=24  Score=32.96  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=73.7

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.++...+++-++..+.++..||.+-.+|+...-+|......        .+..=+..++++|++||.+-.+|-..=-++
T Consensus        84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~--------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~  155 (421)
T KOG0529|consen   84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS--------DWNTELQLCEKALKQDPRNFHAWHYRRFVV  155 (421)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence            456666888999999999999999999999999999876543        236778889999999999998886655554


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ....  ++     ...-.+=+++-.++|.-|+.|-
T Consensus       156 ~~~~--~~-----~~~~~~El~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  156 EQAE--RS-----RNLEKEELEFTTKLINDNFSNY  183 (421)
T ss_pred             HHHh--cc-----cccchhHHHHHHHHHhccchhh
Confidence            3321  00     0023445667777777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1zu2_A	158	Solution Nmr Structure Of The Plant Tom20 Mitochond		3e-44
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-04

>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial Import Receptor From Arabidopsis Thaliana Length = 158

Iteration: 1
 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 110/142 (77%)
Query: 4   SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
           ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+
Sbjct: 8   TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y
Sbjct: 68  KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127
Query: 124 QKSLEVSTKAPELHMELHKHGI 145
            KSLE++ KAP+LH E +K G+
Sbjct: 128 LKSLEMTAKAPQLHAEAYKQGL 149

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 27/118 (22%)
Query: 3   FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
           + Q D+D  +  E+ +K  E     DP +A+     G A  +   ++          EAI
Sbjct: 20  YKQGDYDEAI--EYYQKALEL----DPNNAEAWYNLGNAYYKQGDYD----------EAI 63
Query: 63  SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             +++AL +DP      ++LGNA+             +GD+D+A E +Q+A++ +P N
Sbjct: 64  EYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPNN 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-04

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score =  178 bits (451), Expect = 1e-57
 Identities = 83/146 (56%), Positives = 110/146 (75%)

Query: 3   FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
            ++++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI
Sbjct: 7   DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66

Query: 63  SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122
           +KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  
Sbjct: 67  TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126

Query: 123 YQKSLEVSTKAPELHMELHKHGINQQ 148
           Y KSLE++ KAP+LH E +K G+   
Sbjct: 127 YLKSLEMTAKAPQLHAEAYKQGLGGS 152

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 21/101 (20%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             D  + D +           QF+          +A   +  A  +    +  ++  G  
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQ----------QAADLYAVAFALGKNDYTPVFHTGQC 113

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126
                              KA ECF+  +      +L  K+
Sbjct: 114 Q-----------LRLKAPLKAKECFELVIQHSNDEKLKIKA 143

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 24/118 (20%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
           + +     K A   Y K    +  +       G      ++ E          + +    
Sbjct: 97  MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE---------KKKLETDY 147

Query: 67  EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
           + L       Y  +  G +                 ++KA    Q+ +   P+ E  +
Sbjct: 148 KKLSSPTKMQYARYRDGLSK-----------LFTTRYEKARNSLQKVILRFPSTEAQK 194

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 43/151 (28%)

Query: 6   SDFDRLLLSEHNRKTAEANYAK-----DPLDADNLTRWGEALLELSQFESVSDSKKIINE 60
           S F + +    N    E  Y         + +   T    A  +   ++          +
Sbjct: 25  SYFRQTI--ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD----------K 72

Query: 61  AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           A   ++E L   P     L +                  +G    A   +++ +  E  N
Sbjct: 73  AYLFYKELLQKAPNNVDCLEACAEMQ-----------VCRGQEKDALRMYEKILQLEADN 121

Query: 121 ---------------ELYQKSLEVSTKAPEL 136
                          E  +K LE   K    
Sbjct: 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 31  DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--AKHYTLWSLGNAHTS 88
             D + +   A +E  Q            +A+S F + + ++    + Y   ++      
Sbjct: 3   SVDEMLQKVSAAIEAGQNG----------QAVSYFRQTIALNIDRTEMYYWTNVDKNSEI 52

Query: 89  CGFLTADLSEA---KGDFDKASECFQRAVDEEPTNELYQKSL 127
              L  +L+ A     ++DKA   ++  + + P N    ++ 
Sbjct: 53  SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 20/101 (19%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   + +    +P D +    L       L+L               A+   +  +   P
Sbjct: 24  ALTLFERALKENPQDPEALYWL---ARTQLKLGLVN----------PALENGKTLVARTP 70

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114
                   L  A+ +      D    KG  ++A    + A 
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQF-ESVSDSKKIINEAISKFEEALVID 72
           A  N        P        L    EA + L +  E     K  + +A+S  ++A  ++
Sbjct: 58  ALENGKTLVARTPRYLGGYMVL---SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 73  PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
           P         G             +   G+ DKA    ++A+  E T E+ 
Sbjct: 115 PRYAPLHLQRGLV----------YAL-LGERDKAEASLKQALALEDTPEIR 154

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 10  RLLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF 65
              L +++   +   Y +       +A+        L   +        + +  +  +  
Sbjct: 52  EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-------QHMTAQTRAMI 104

Query: 66  EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           ++AL +D  +   L  L +               + ++ +A E +Q+ +D     
Sbjct: 105 DKALALDSNEITALMLLASDA-----------FMQANYAQAIELWQKVMDLNSPR 148

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 25/109 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+  +      D  DA      G     L  +E          +A+  +    ++D  + 
Sbjct: 37  AQKIFQALCMLDHYDARYFLGLGACRQSLGLYE----------QALQSYSYGALMDINEP 86

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
              +     H              GD D A   F  A         ++ 
Sbjct: 87  RFPFHAAECH-----------LQLGDLDGAESGFYSARALAAAQPAHEA 124

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 21/93 (22%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
                + L   G    +  +++          +A   F+   ++D         LG    
Sbjct: 14  SEDTLEQLYALGFNQYQAGKWD----------DAQKIFQALCMLDHYDARYFLGLGACR- 62

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     ++ G +++A + +      +   
Sbjct: 63  ----------QSLGLYEQALQSYSYGALMDINE 85

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 18/118 (15%)

Query: 12  LLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67
              + + + A  +Y K    DP +            E  +F           E +   E+
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA----------ECVQFCEK 67

Query: 68  ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
           A+ +          +  A +  G   A   + + D   A + F R++ E    EL +K
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAG--NA--FQKQNDLSLAVQWFHRSLSEFRDPELVKK 121

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 26/135 (19%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A + +      DP +     R     L + + +           A+    + + +     
Sbjct: 45  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK----------AALPDLTKVIQLKMDFT 94

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136
                 G+               +G  D+A + F++ +   P+    +++     K+ E+
Sbjct: 95  AARLQRGHLLL-----------KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143

Query: 137 HMELHKHGINQQTLG 151
              L    +N    G
Sbjct: 144 -QRLRSQALNAFGSG 157

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
                +  +            EAI    E L ++P     L     A+            
Sbjct: 302 CHCFSKDEKPV----------EAIRVCSEVLQMEPDNVNALKDRAEAY-----------L 340

Query: 99  AKGDFDKASECFQRAVDEEPTNELYQKSLE 128
            +  +D+A + ++ A +    ++  ++ LE
Sbjct: 341 IEEMYDEAIQDYETAQEHNENDQQIREGLE 370

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
            E  +++     P   +    + E L + + F+          +A+ +++ A+ ++    
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD----------KALKQYDLAIELENKLD 406

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121
                +         LT   +    +F +A+   ++A   +P +E
Sbjct: 407 GIYVGIAPLVGKATLLTR--NPTVENFIEATNLLEKASKLDPRSE 449

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 18/121 (14%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y      +             + + +        +    EA +  E+A  +DP   
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF-IEATNLLEKASKLDPRSE 449

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-ELYQ-KSLEVSTKAP 134
                L                 + D D+A   F+ + D   T  E  Q  +   + K  
Sbjct: 450 QAKIGLAQMK-----------LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498

Query: 135 E 135
           +
Sbjct: 499 Q 499

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  ++ K    DP +     +        ++F+          +  + F EA    P   
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFD----------DCETLFSEAKRKFPEAP 372

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     T            K DFDKA + +  A++ E   
Sbjct: 373 EVPNFFAEILT-----------DKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
               + K    D  ++      G+    L  ++          +A   F++A  +DP   
Sbjct: 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD----------QAGKDFDKAKELDPENI 338

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +    L                 +  FD     F  A  + P  
Sbjct: 339 FPYIQLACLAYR-----------ENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 26/104 (25%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  +  K     P   ++       + + +             E  + F++AL +D    
Sbjct: 256 AHEDIKKAIELFP-RVNSYIYMALIMADRNDST----------EYYNYFDKALKLDSNNS 304

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
              +  G  +               ++D+A + F +A + +P N
Sbjct: 305 SVYYHRGQMN-----------FILQNYDQAGKDFDKAKELDPEN 337

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
           A+   +       G+   E  QF+           A+     AL  DP        LG  
Sbjct: 13  AQGTDNMLLRFTLGKTYAEHEQFD----------AALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       + +GD   A + ++  +    + 
Sbjct: 63  L-----------QGQGDRAGARQAWESGLAAAQSR 86

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 11/61 (18%)

Query: 58  INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
           +     + E  L          ++LG  +                FD A    + A+D +
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTY-----------AEHEQFDAALPHLRAALDFD 49

Query: 118 P 118
           P
Sbjct: 50  P 50

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 25/126 (19%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A + +      DP +     R     L + + +           A+    + + +     
Sbjct: 22  ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK----------AALPDLTKVIALKMDFT 71

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136
                 G+               +G  D+A + F++ +   P+ +  +++     KA E+
Sbjct: 72  AARLQRGHLLL-----------KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120

Query: 137 HMELHK 142
                +
Sbjct: 121 QRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
                +  +            EAI    E L ++P     L     A+            
Sbjct: 279 CHCFSKDEKPV----------EAIRICSEVLQMEPDNVNALKDRAEAY-----------L 317

Query: 99  AKGDFDKASECFQRAVDEEPTNELYQKSLE 128
            +  +D+A + ++ A +    ++  ++ LE
Sbjct: 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A ++          + +   +      +L   E           ++S+  E L +D    
Sbjct: 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHE----------LSLSEVRECLKLDQDHK 222

Query: 77  YTLWSLGNAHTSCGFLT-ADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127
                          +  A+     G +  A+  ++  +  EP+   Y    
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 23/117 (19%)

Query: 6   SDFDRLLLSEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
            DF ++L S  + +  +   ++     +   L        + + +            AI+
Sbjct: 92  DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT----------AAIT 141

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             ++ L +                            +G+  KA    + A   +  N
Sbjct: 142 FLDKILEVCVWDAELRELRAECF-----------IKEGEPRKAISDLKAASKLKSDN 187

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 21/91 (23%)

Query: 31  DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90
           D +     G+ LL   Q            +A+S+F  A+  DP  +   +          
Sbjct: 2   DVEKHLELGKKLLAAGQLA----------DALSQFHAAVDGDPDNYIAYYRRATVFL--- 48

Query: 91  FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121
                   A G    A     + +  +    
Sbjct: 49  --------AMGKSKAALPDLTKVIALKMDFT 71

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 28/121 (23%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             D  D+      G     + Q++           AI  +    V+D  +    +     
Sbjct: 49  VLDHYDSRFFLGLGACRQAMGQYD----------LAIHSYSYGAVMDIXEPRFPFHAAEC 98

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY-------QKSLEVSTKAPELHM 138
                          G+  +A      A +       +          LE      E+  
Sbjct: 99  L-----------LQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

Query: 139 E 139
           E
Sbjct: 148 E 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                A          + L        +   +E          +A   F+   V+D    
Sbjct: 6   GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE----------DAHXVFQALCVLDHYDS 55

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                LG              +A G +D A   +      +   
Sbjct: 56  RFFLGLGACR-----------QAMGQYDLAIHSYSYGAVMDIXE 88

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           +EA + +     P   +  T + E L +   F+           AI +++ A  ++  + 
Sbjct: 363 SEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD----------TAIKQYDIAKRLEEVQE 412

Query: 77  YTLWSLGNAHTSCGFLTADLSEA-----KGDFDKASECFQRAVDEEPTNE 121
                +G        L    S+      +  F+ A +   +A + +P +E
Sbjct: 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+ ++ K    +P +     +    L +  +F           E+ + F E  +  P   
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT----------ESEAFFNETKLKFPTLP 378

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                     T            +GDFD A + +  A   E   
Sbjct: 379 EVPTFFAEILT-----------DRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
               + K    +P         G+    L  ++           A   F++A  ++P   
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK----------NAKEDFQKAQSLNPENV 344

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           Y    L                 +G F ++   F     + PT 
Sbjct: 345 YPYIQLACLLYK-----------QGKFTESEAFFNETKLKFPTL 377

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 22/87 (25%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLS 97
            + L+     E           A+   EE L  +P      +  +GNA+           
Sbjct: 7   IKELINQGDIE----------NALQALEEFLQTEPVGKDEAYYLMGNAY----------- 45

Query: 98  EAKGDFDKASECFQRAVDEEPTNELYQ 124
              GD+ KA   +Q A++  P +   Q
Sbjct: 46  RKLGDWQKALNNYQSAIELNPDSPALQ 72

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           AE  Y       P  AD+L        E    E          EA+  + +AL + P   
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFA 339

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L +             + +G   +A   ++ A+   PT 
Sbjct: 340 AAHSNLASVL-----------QQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A  +Y       P   D       AL+     E           A+  +  AL  +P  +
Sbjct: 86  AIEHYRHALRLKPDFIDGYINLAAALVAAGDME----------GAVQAYVSALQYNPDLY 135

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                LGN             +A G  ++A  C+ +A++ +P  
Sbjct: 136 CVRSDLGNLL-----------KALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A A Y +     P  A           E    +           AI  +  A+ + P   
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLID----------LAIDTYRRAIELQPHFP 271

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L NA            + KG   +A +C+  A+   PT+
Sbjct: 272 DAYCNLANAL-----------KEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 31/105 (29%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y      +P       +L   G  L  L + E          EA + + +A+   P
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDL---GNLLKALGRLE----------EAKACYLKAIETQP 166

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
                  +LG               A+G+   A   F++AV  +P
Sbjct: 167 NFAVAWSNLGCVF-----------NAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y +     P   D   NL     AL E               EA   +  AL + P
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNL---ANALKEKGSVA----------EAEDCYNTALRLCP 302

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L +L N               +G+ ++A   +++A++  P  
Sbjct: 303 THADSLNNLANIK-----------REQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           +          +PL A+  +  G    E  Q +          EAI  +  AL + P   
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ----------EAIEHYRHALRLKPDFI 101

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +L  A             A GD + A + +  A+   P  
Sbjct: 102 DGYINLAAAL-----------VAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 25/104 (24%)

Query: 21  AEANY----AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           AE +      ++P +   L        +  + +           +      A+  +P   
Sbjct: 18  AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD----------RSAHFSTLAIKQNPLLA 67

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +LGN +           + +G   +A E ++ A+  +P  
Sbjct: 68  EAYSNLGNVY-----------KERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A  ++ K    DP   D   NL   G  L E   F+           A++ +  AL + P
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINL---GNVLKEARIFD----------RAVAAYLRALSLSP 234

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                  +L   +             +G  D A + ++RA++ +P  
Sbjct: 235 NHAVVHGNLACVY-----------YEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+A Y K     P  A   +  G       +             AI  FE+A+ +DP   
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW----------LAIHHFEKAVTLDPNFL 203

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               +LGN                  FD+A   + RA+   P +
Sbjct: 204 DAYINLGNVLK-----------EARIFDRAVAAYLRALSLSPNH 236

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 14/100 (14%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
             DP +   +T       E   +           +     E+A+ +          +  A
Sbjct: 32  ELDPTNMTYITNQAAVYFEKGDYN----------KCRELCEKAIEVGRENREDYRQIAKA 81

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125
           +   G    +    +  +  A   + +++ E  T ++ +K
Sbjct: 82  YARIG----NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y      D    D   + G        F            AI   E+ +       
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP----------LAIQYMEKQIRPTTTDP 142

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
              + LG A+               ++ KA   F + ++ +P  
Sbjct: 143 KVFYELGQAY-----------YYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 21/93 (22%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
               + +   +G+ L++  Q             AI +++ A+  D  +      +G+   
Sbjct: 70  TKAKSADFEYYGKILMKKGQDS----------LAIQQYQAAVDRDTTRLDMYGQIGSYF- 118

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       KG+F  A +  ++ +    T+
Sbjct: 119 ----------YNKGNFPLAIQYMEKQIRPTTTD 141

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 21/97 (21%)

Query: 22  EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81
           EA   K+P   +     G    E  +             AI     A ++DP       +
Sbjct: 41  EAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIALNHARMLDPKDIAVHAA 90

Query: 82  LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
           L  +HT            + + + A    +  +  +P
Sbjct: 91  LAVSHT-----------NEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 30  LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89
           +  +N    G ++L+L+             EA   FE     +P +     SLG      
Sbjct: 15  MYHENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQA-- 62

Query: 90  GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS 130
                           A      A   +P +     +L VS
Sbjct: 63  ---------ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 24/111 (21%)

Query: 21  AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80
           A A+  +    A+     G     L ++           +A +     +   P       
Sbjct: 16  AIASGLQGKDLAECYLGLGSTFRTLGEYR----------KAEAVLANGVKQFPNHQALRV 65

Query: 81  SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLE 128
                               G +++  E   + + E   +E    Y++++ 
Sbjct: 66  FYAMVL-----------YNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 27/109 (24%)

Query: 17  NRKTAEANYAKD----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72
           +      +Y  +     +  +N    G ++L+L+             EA   FE      
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLA----------EAALAFEAVCQAA 51

Query: 73  PAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           P +    W  LG                      A      A   +P +
Sbjct: 52  P-EREEAWRSLGLTQA-----------ENEKDGLAIIALNHARMLDPKD 88

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 10/100 (10%), Positives = 24/100 (24%), Gaps = 21/100 (21%)

Query: 21  AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80
            +   + +   A      G A  +L  ++           AI    + L++         
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYD----------AAIDALNQGLLLSTNDANVHT 554

Query: 81  SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           ++   +             K     A      ++   P  
Sbjct: 555 AIALVY-----------LHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   ++K    DP        +  +     + +          +AIS +  A  +    H
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD----------QAISAYTTAARLFQGTH 441

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                LG  H              G+   A+E  Q +      +
Sbjct: 442 LPYLFLGMQH-----------MQLGNILLANEYLQSSYALFQYD 474

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/142 (12%), Positives = 33/142 (23%), Gaps = 39/142 (27%)

Query: 28  DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87
            P     +         L   +            +    +A  + P +   + S      
Sbjct: 68  TPEQVVAIASHDGGKQALETVQ----------RLLPVLCQAHGLTPQQVVAIASHDGGK- 116

Query: 88  SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------ELYQKSLEVSTKA 133
                     +A     +      +A    P                E  Q  L V  +A
Sbjct: 117 ----------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166

Query: 134 ----PELHMELHKHGINQQTLG 151
               PE  + +  +G  +Q L 
Sbjct: 167 HGLTPEQVVAIASNGGGKQALE 188

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 19/153 (12%), Positives = 36/153 (23%), Gaps = 43/153 (28%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +         L   +            +    +A  + P + 
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ----------RLLPVLCQAHGLTPQQV 310

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S G              +A     +      +A    P                E 
Sbjct: 311 VAIASNGGGK-----------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359

Query: 123 YQKSLEVSTKA----PELHMELHKHGINQQTLG 151
            Q+ L V  +A    PE  + +  +G  +Q L 
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 19/153 (12%), Positives = 35/153 (22%), Gaps = 43/153 (28%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +   G     L   +            +    +A  + P + 
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ----------RLLPVLCQAHGLTPQQV 344

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S                +A     +      +A    P                E 
Sbjct: 345 VAIASHDGGK-----------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393

Query: 123 YQKSLEVSTKA----PELHMELHKHGINQQTLG 151
            Q+ L V  +A    PE  + +  H   +Q L 
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/150 (10%), Positives = 29/150 (19%), Gaps = 41/150 (27%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +     P     +   G     L   +            +    +A  + P + 
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ----------RLLPVLCQAHGLTPEQV 412

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN--------------EL 122
             + S                +A     +      +A    P                E 
Sbjct: 413 VAIASHDGGK-----------QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

Query: 123 YQKSLEVSTKAPELHMELHKHGINQQTLGG 152
               L     A       + H +    LGG
Sbjct: 462 IVAQLSRPDPALAA--LTNDHLVALACLGG 489

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 24/108 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                 +      ++A  L   G+AL     +           EA     +A+ ++P   
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP---------EAEVLLSKAVKLEPELV 137

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
                LG  +             KGD   A  CF  A+         Q
Sbjct: 138 EAWNQLGEVY-----------WKKGDVTSAHTCFSGALTHCKNKVSLQ 174

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 21  AEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77
           A   ++       +  +L      L +L        S+ +  +++ + + A+ +D     
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHV-MDSVRQAKLAVQMDV-LDG 213

Query: 78  TLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
             W  LGNA+ S  F T    +      +A   + +A   +      
Sbjct: 214 RSWYILGNAYLSLYFNTG---QNPKISQQALSAYAQAEKVDRKASSN 257

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 55  KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114
            ++I  A++  ++A   +         L + H                +++A   FQ+  
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLH-----------ALADQYEEAEYYFQKEF 361

Query: 115 DEEPTNELYQ 124
            +E T    Q
Sbjct: 362 SKELTPVAKQ 371

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 39/145 (26%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A+  + K     P + +  +    A   L  +            AI    +A+ ++P   
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-------SQNAIDPLRQAIRLNPDNQ 209

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN---------------- 120
           Y    L             + E   +  +  +  + A+++ P                  
Sbjct: 210 YLKVLLALKL-------HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262

Query: 121 -----ELYQKSLEVSTKAPELHMEL 140
                EL +K+LE       LH ++
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQI 287

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y K     P  A   +     L +  + +          EA+  ++EA+ I P   
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ----------EALMHYKEAIRISPTFA 77

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
               ++GN             +   D   A +C+ RA+   P  
Sbjct: 78  DAYSNMGNTL-----------KEMQDVQGALQCYTRAIQINPAF 110

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 21/95 (22%)

Query: 26  AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85
              P  AD+L        E    E          EA+  + +AL + P       +L + 
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFAAAHSNLASV 52

Query: 86  HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       + +G   +A   ++ A+   PT 
Sbjct: 53  L-----------QQQGKLQEALMHYKEAIRISPTF 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 25/104 (24%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
                       P D        +A L +                    +  L + P   
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT----------AGEMAVQRGLALHPGHP 57

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
             +  LG                +    +A+   Q+A D  P +
Sbjct: 58  EAVARLGRVR-----------WTQQRHAEAAVLLQQASDAAPEH 90

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 27/115 (23%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
              ++     +E  Y         D       G   L+                 I   E
Sbjct: 40  EAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLP----------VTILFME 89

Query: 67  EALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
            A++ DP      W  LG                  +   A    QR ++ +P N
Sbjct: 90  AAILQDP-GDAEAWQFLGITQA-----------ENENEQAAIVALQRCLELQPNN 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 59/193 (30%)

Query: 8   FD---RLLLSEHNRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAI 62
           F+   ++LL+   ++        D L A   T        + L+  E  S   K ++   
Sbjct: 262 FNLSCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 63  SKF-EEALVIDPA-------------------KHYTLWSLGNAHTSCGFLTA-DLSEAKG 101
                E L  +P                    KH     L     S   L   + +E + 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRK 373

Query: 102 DFDKASECFQRAVD---------------EEP---TNELYQKSL------EVSTKAPELH 137
            FD+ S  F  +                  +     N+L++ SL      E +   P ++
Sbjct: 374 MFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 138 MELHKHGINQQTL 150
           +EL     N+  L
Sbjct: 433 LELKVKLENEYAL 445

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 33/109 (30%)

Query: 21  AEANYAK---DPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71
           A     +   D L  +      NL   G   L++ +            +A   FE++L +
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENL---GLVSLQMKKPA----------QAKEYFEKSLRL 170

Query: 72  DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +  +      + +           L   + ++  A + +         N
Sbjct: 171 NRNQPSVALEMAD-----------LLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 25/114 (21%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE 66
             L        + N  K         D   + G   L+    E          +A     
Sbjct: 12  SGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTE----------QAKVPLR 61

Query: 67  EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           +AL IDP+      +L               + + +   A E +++A+  +  N
Sbjct: 62  KALEIDPSSADAHAALAVVF-----------QTEMEPKLADEEYRKALASDSRN 104

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 27  KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86
           +DP D        +  L+                A++ FEE +  DP    T + LG  +
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNAS----------RALALFEELVETDPDYVGTYYHLGKLY 51

Query: 87  TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                      E     D A + + + ++     
Sbjct: 52  -----------ERLDRTDDAIDTYAQGIEVAREE 74

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 25/113 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A   Y +     P DA   +    AL +L  F           EAI+   +A+  DP   
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP----------EAIADCNKAIEKDPNFV 207

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129
                   A             A  ++  A E    A  ++        + E+
Sbjct: 208 RAYIRKATAQ-----------IAVKEYASALETLDAARTKDAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 30/106 (28%)

Query: 21  AEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA 74
              +  K        L         + L +L   E          + + K E    ++P 
Sbjct: 91  KLGDLKKTIEYYQKSLTEHRT---ADILTKLRNAE----------KELKKAEAEAYVNPE 137

Query: 75  KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           K       G  +             K D+  A + +   +   P +
Sbjct: 138 KAEEARLEGKEY-----------FTKSDWPNAVKAYTEMIKRAPED 172

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 32/107 (29%)

Query: 14  SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           +E   + +             L       +    +           +A +  E+AL  DP
Sbjct: 1   AEKANQVSNIKT--------QL---AMEYMRGQDYR----------QATASIEDALKSDP 39

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                       +           +     DKA E F++A+  +P +
Sbjct: 40  KNELAWLVRAEIY-----------QYLKVNDKAQESFRQALSIKPDS 75

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 25/112 (22%)

Query: 21  AEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76
           A A+       DP +        E    L   +          +A   F +AL I P   
Sbjct: 27  ATASIEDALKSDPKNELAWLVRAEIYQYLKVND----------KAQESFRQALSIKPDSA 76

Query: 77  YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128
               + G            L        ++   F +A+  +PT      +  
Sbjct: 77  EINNNYGWF----------LCGRLNRPAESMAYFDKAL-ADPTYPTPYIANL 117

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 15/107 (14%), Positives = 23/107 (21%), Gaps = 33/107 (30%)

Query: 21  AEANYAK---DPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71
           + A + K   DP          N    G    +  QF            A +  + +L  
Sbjct: 96  SMAYFDKALADPTYPTPYIANLNK---GICSAKQGQFG----------LAEAYLKRSLAA 142

Query: 72  DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
            P        L                  G    A   F++      
Sbjct: 143 QPQFPPAFKELARTK-----------MLAGQLGDADYYFKKYQSRVE 178

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 21/82 (25%)

Query: 39  GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98
           G    +L ++           EA+    +ALV+ P    T  ++G  H            
Sbjct: 243 GHVCRKLKKYA----------EALDYHRQALVLIPQNASTYSAIGYIH-----------S 281

Query: 99  AKGDFDKASECFQRAVDEEPTN 120
             G+F+ A + F  A+     +
Sbjct: 282 LMGNFENAVDYFHTALGLRRDD 303

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 25/105 (23%)

Query: 20  TAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75
            A    +K    +         +G +    S+ +          +A++ +  A  +    
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD----------QAMAAYFTAAQLMKGC 158

Query: 76  HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
           H  +  +G  +               +   A   F +A+   P +
Sbjct: 159 HLPMLYIGLEY-----------GLTNNSKLAERFFSQALSIAPED 192

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 31/107 (28%)

Query: 21  AEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73
           A   Y K    DP  A+   NL   G A  +   ++          EAI  +++AL +DP
Sbjct: 54  AIEYYQKALELDPRSAEAWYNL---GNAYYKQGDYD----------EAIEYYQKALELDP 100

Query: 74  AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                 ++LGNA            + +GD+D+A E +Q+A++ +P +
Sbjct: 101 RSAEAWYNLGNA----------YYK-QGDYDEAIEYYQKALELDPRS 136

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 23/128 (17%), Positives = 33/128 (25%), Gaps = 31/128 (24%)

Query: 2   EFSQSDFDRLLLSEHNRKTAEANYAKD--------PLDADNLTRWGEALLELSQFESVSD 53
           E ++ D +             A Y K           D       G   L+         
Sbjct: 26  EMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP---- 81

Query: 54  SKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEAKGDFDKASECFQR 112
                  A+  FE A+  DP KH   W  LG                      A    +R
Sbjct: 82  ------NAVLLFEAAVQQDP-KHMEAWQYLGTTQA-----------ENEQELLAISALRR 123

Query: 113 AVDEEPTN 120
            ++ +P N
Sbjct: 124 CLELKPDN 131

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 21/93 (22%)

Query: 41  ALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK 100
           A  +L  +            A+   E A+ IDPA       +G A             + 
Sbjct: 55  AYSKLGNYA----------GAVQDCERAICIDPAYSKAYGRMGLAL-----------SSL 93

Query: 101 GDFDKASECFQRAVDEEPTNELYQKSLEVSTKA 133
               +A   +++A++ +P NE Y+ +L+++   
Sbjct: 94  NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 31/117 (26%)

Query: 11  LLLSEHNRKTAEANYAK----DPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAIS 63
           L  S   R  A  ++++     P   +    L   G  L +   F+           A  
Sbjct: 52  LYDSLGLRALARNDFSQALAIRPDMPEVFNYL---GIYLTQAGNFD----------AAYE 98

Query: 64  KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
            F+  L +DP  +Y   + G A               G    A +       ++P +
Sbjct: 99  AFDSVLELDPTYNYAHLNRGIAL-----------YYGGRDKLAQDDLLAFYQDDPND 144

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 25/86 (29%)

Query: 32  ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAHT 87
              L   GE L +                 +S FE A+ +              LGNA+ 
Sbjct: 5   CLELALEGERLCKSGDCR----------AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF 54

Query: 88  SCGFLTADLSEAKGDFDKASECFQRA 113
                         D+ KA E     
Sbjct: 55  Y-----------LHDYAKALEYHHHD 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.69
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.56
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.55
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.53
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.52
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.51
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.5
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.49
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.49
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.45
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.45
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.44
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.41
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.33
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.25
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.23
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.17
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.17
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.16
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.1
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.07
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.99
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.99
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.91
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.88
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.84
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.8
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.72
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.71
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.67
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.64
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.57
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.54
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.46
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.44
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.77
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.74
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.56
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.51
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.49
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.45
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.72
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.61
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.16
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.87
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.69
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.61
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.58
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.39
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.18
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.06
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.05
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.47
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.42
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.48
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.42
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.38
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.36
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.29
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.55
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.53
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.66
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	81.74

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=100.00  E-value=4.3e-36  Score=240.83  Aligned_cols=144  Identities=58%  Similarity=0.921  Sum_probs=141.4

Q ss_pred             CCCChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH
Q 028992            1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW   80 (200)
Q Consensus         1 ~~~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~   80 (200)
                      ||| +.|++|+.+||+|++.++++++++|+++++|++||.+|..+++++.+.++++++++||.+|++||++||+++++||
T Consensus         6 ~~~-~~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~   84 (158)
T 1zu2_A            6 MDT-ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   84 (158)
T ss_dssp             CSC-CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccc-ccHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence            899 7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      +||++|+++|+|+|+.+++.++|++|++||++|++++|++..|++++++.+++|++|++++++++
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~~~~~~  149 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL  149 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhccCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999854

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=3.9e-18  Score=128.21  Aligned_cols=101  Identities=14%  Similarity=0.207  Sum_probs=94.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+-+.+.|++|++.++++++++|+++.+++++|.++..+|++          ++|+..|++|+++||+++.+|+++|.+|
T Consensus        22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF----------QRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            345678999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      ..+|           ++++|+.+|+++++++|++...+..|.
T Consensus        92 ~~~~-----------~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           92 VAMR-----------EWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHCC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            9999           999999999999999999987666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=1.7e-18  Score=133.24  Aligned_cols=117  Identities=13%  Similarity=0.088  Sum_probs=105.0

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .+.+++|++.+++++..+|+++..++.+|.+|..++++          ++|++.|+++++++|+++++|+++|.+|...|
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY----------DLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            35678899999999999999999999999999999998          99999999999999999999999999999988


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------H-HHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------L-YQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~-y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                                 ++++|+.+|++|++++|++.                     . ++++++++|+.|+++.-.++.+..++
T Consensus        80 -----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           80 -----------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             -----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             -----------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence                       99999999999999999986                     3 47888899999988877777665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=6.3e-18  Score=162.11  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=115.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.++++++++|+++++++++|.+|..+|++          ++|+..|++|++++|+++++|++||++|.
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~----------~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      .+|           ++++|+++|++|++++|++.                     .|+++++++|+.+++|.+|+..+..
T Consensus        89 ~~g-----------~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           89 EMQ-----------DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            999           99999999999999999997                     8999999999999999999998876


Q ss_pred             ccc
Q 028992          147 QQT  149 (200)
Q Consensus       147 ~~~  149 (200)
                      ++.
T Consensus       158 ~g~  160 (723)
T 4gyw_A          158 VCD  160 (723)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=1.8e-17  Score=134.02  Aligned_cols=131  Identities=17%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|+..++++++.+|+++++++++|.++..+|++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV----------NPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..+..........|++++|+.+|+++++++|++.                     .|+++++++ +.++++.+++..+..
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~  163 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS  163 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence            9811111111111399999999999999999996                     888999999 999999999999886


Q ss_pred             ccc
Q 028992          147 QQT  149 (200)
Q Consensus       147 ~~~  149 (200)
                      ++-
T Consensus       164 ~g~  166 (217)
T 2pl2_A          164 MGR  166 (217)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=6e-18  Score=150.71  Aligned_cols=121  Identities=11%  Similarity=-0.002  Sum_probs=113.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.+.+.+++|++.++++++++|++.++|+++|.++..+|+ +          ++|+..|++|++++|+++.+|+++|.+|
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~----------~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL----------HEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999997 8          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      ..+|           ++++|+.+|++||+++|++.                     .|+++|+++|+.+.+|.+++..+.
T Consensus       177 ~~~g-----------~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          177 EWLR-----------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcc-----------CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9988           99999999999999999996                     899999999999999999999998


Q ss_pred             hccc
Q 028992          146 NQQT  149 (200)
Q Consensus       146 ~~~~  149 (200)
                      .+++
T Consensus       246 ~l~~  249 (382)
T 2h6f_A          246 NTTG  249 (382)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            7443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=1.6e-17  Score=130.01  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=91.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+++.|++|++.+++++.++|+++.+|+++|.++..+|++          ++|+.+|++|++++|+++.+|+++|.+|.
T Consensus        46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~----------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF----------QQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH----------HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      .+|           ++++|+.+|++|++++|+.+.-++|-
T Consensus       116 ~lg-----------~~~eA~~~~~~al~l~~~~~~~~~A~  144 (151)
T 3gyz_A          116 RLK-----------APLKAKECFELVIQHSNDEKLKIKAQ  144 (151)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999           99999999999999999987544443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.75  E-value=3.6e-17  Score=132.32  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=111.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------cCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-----------SQFESVSDSKKIINEAISKFEEALVIDPAKH   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-----------~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~   76 (200)
                      +.+++.+++|+..++++++++|+++++++++|.++..+           |++          ++|+..|+++++++|+++
T Consensus        49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL----------EQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH----------HHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH----------HHHHHHHHHHHHhCcccH
Confidence            35778999999999999999999999999999999998           777          999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChH
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE  135 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e  135 (200)
                      .+++++|.+|...|           ++++|+.+|++|++++ ++.                     .|+++++++|+.++
T Consensus       119 ~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          119 PLHLQRGLVYALLG-----------ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999           9999999999999999 775                     89999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 028992          136 LHMELHKHGINQQT  149 (200)
Q Consensus       136 ~~~~l~~~~~~~~~  149 (200)
                      ++.+++..+..++-
T Consensus       187 ~~~~la~~~~~~g~  200 (217)
T 2pl2_A          187 LRVRYASALLLKGK  200 (217)
T ss_dssp             HHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHccC
Confidence            99999998876553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=1.6e-17  Score=124.85  Aligned_cols=100  Identities=15%  Similarity=0.170  Sum_probs=93.6

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992           24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        24 a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      .-.+||+.++.+.++|.+++..|++          ++|+..|++|++++|+++.+|+++|.+|..+|           ++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----------~~   63 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDY----------PTAMRHYNEAVKRDPENAILYSNRAACLTKLM-----------EF   63 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-----------cH
Confidence            3468999999999999999999999          99999999999999999999999999999999           99


Q ss_pred             HHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992          104 DKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus       104 d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      ++|+.+|++|++++|++.                     .|+++++++|+.++++.+|++.+
T Consensus        64 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999997                     88999999999999999988753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=3.2e-16  Score=121.25  Aligned_cols=121  Identities=15%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.|++|++.++++++++|++++++.++|.++..++++          ++|+..+++++..+|+++.++..+|.++.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP----------NDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..+           ++++|+.++++++.++|++.                     .|+++++++|..+++|.++|..+..
T Consensus        85 ~~~-----------~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           85 MID-----------EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            988           99999999999999999986                     7889999999999999999999986


Q ss_pred             ccc
Q 028992          147 QQT  149 (200)
Q Consensus       147 ~~~  149 (200)
                      ++-
T Consensus       154 ~g~  156 (184)
T 3vtx_A          154 KGL  156 (184)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.70  E-value=1.8e-16  Score=141.20  Aligned_cols=120  Identities=8%  Similarity=-0.013  Sum_probs=112.4

Q ss_pred             HHHhch-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLL-SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~-fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.+++. +++|++.++++++++|+++++|+++|.++..+|++          ++|+..|++||++||++..+|+++|.++
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~----------~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----------SQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            346776 99999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCChHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~~e~~~~  139 (200)
                      ..+|           ++++|+.+|+++|+++|++.                           .|+++++++|+.+.+|.+
T Consensus       211 ~~~g-----------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~  279 (382)
T 2h6f_A          211 QEFK-----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  279 (382)
T ss_dssp             HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHcC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9988           99999999999999999986                           288999999999999999


Q ss_pred             HHHHHHhcc
Q 028992          140 LHKHGINQQ  148 (200)
Q Consensus       140 l~~~~~~~~  148 (200)
                      ++..+..++
T Consensus       280 l~~ll~~~g  288 (382)
T 2h6f_A          280 LKGILQDRG  288 (382)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHccC
Confidence            999887643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=1.7e-16  Score=122.01  Aligned_cols=95  Identities=9%  Similarity=0.051  Sum_probs=88.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+++.|++|++.++++++++|+++++|+++|.++..++++          ++|+..|+++++++|+++++++++|.+|.
T Consensus        41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT----------DKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHH-HHHHHHhCCCCHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASEC-FQRAVDEEPTNELY  123 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~-fqkAl~l~P~~~~y  123 (200)
                      ..|           ++++|+.+ +++|++++|+++..
T Consensus       111 ~~~-----------~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A          111 KND-----------VTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             HHC-----------SSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             HcC-----------ChHHHHHHHHHHHHHhCcCCHHH
Confidence            988           99887776 59999999999843

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6e-16  Score=113.42  Aligned_cols=100  Identities=18%  Similarity=0.184  Sum_probs=92.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+-+.+.|++|++.++++++++|+++.+++++|.++..++++          ++|+..|+++++++|+++.+++++|.+|
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF----------PEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345778999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE------PTNELYQKSL  127 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~------P~~~~y~kAl  127 (200)
                      ..+|           ++++|+.+|+++++++      |++......+
T Consensus        83 ~~~~-----------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l  118 (126)
T 3upv_A           83 IAVK-----------EYASALETLDAARTKDAEVNNGSSAREIDQLY  118 (126)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHh-----------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence            9999           9999999999999999      7666544444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.69  E-value=4.3e-16  Score=124.68  Aligned_cols=120  Identities=12%  Similarity=0.038  Sum_probs=110.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +-+.+.|++|++.++++++++| .+..+++++|.++..++++          ++|+..|+++++++|+++.+++++|.+|
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY----------KEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH----------HHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            4567899999999999999999 9999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCC--ChHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTK--APEL  136 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k--~~e~  136 (200)
                      ..+|           ++++|+.+|+++++++|++.                            .|+++++++|+  .+++
T Consensus        87 ~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  155 (228)
T 4i17_A           87 RDMK-----------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA  155 (228)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHcc-----------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence            9999           99999999999999999975                            67778888888  8888


Q ss_pred             HHHHHHHHHhcc
Q 028992          137 HMELHKHGINQQ  148 (200)
Q Consensus       137 ~~~l~~~~~~~~  148 (200)
                      +.+++..+..++
T Consensus       156 ~~~l~~~~~~~~  167 (228)
T 4i17_A          156 LYSLGVLFYNNG  167 (228)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888776544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=4.3e-17  Score=127.59  Aligned_cols=93  Identities=12%  Similarity=0.032  Sum_probs=87.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .+++..+..+...+++++.++|+++++++++|.++...|++          ++|+..|+++++++|+++.+|++||.+|.
T Consensus        12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI----------EEAEVFFRFLCIYDFYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            36677788888889999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           +|++|+.+|++|++++|++.
T Consensus        82 ~~g-----------~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           82 IKE-----------QFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHSSSCC
T ss_pred             HHc-----------cHHHHHHHHHHHHhhCCCCc
Confidence            999           99999999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=5.1e-16  Score=119.42  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.+|+++|.++..+|++          ++|+..|++|++++|+++.+++++|.+|.
T Consensus        31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----------DLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            44677899999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+.+|+++++++|+++
T Consensus       101 ~~g-----------~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A          101 QXG-----------ELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHHTTCG
T ss_pred             HcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence            988           99999999999999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.67  E-value=2.9e-16  Score=116.91  Aligned_cols=94  Identities=19%  Similarity=0.145  Sum_probs=84.8

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+-+.+.+++|+..++++++.+|+++++|+.+|.++..+|++          ++|+..|++|++++|++++++++||.+|
T Consensus        26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            355778999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ...|           ++++|+.+|+++++++|++.
T Consensus        96 ~~~g-----------~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           96 TNEH-----------NANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHH-----------HHHHHHHHHHHHHC------
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCcCCC
Confidence            9988           99999999999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.67  E-value=4e-16  Score=117.77  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=90.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.+|+++|.++..+|++          ++|+..|++|++++|+++.+++++|.+|.
T Consensus        28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY----------EQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      .+|           ++++|+.+|+++++++|+++.+.
T Consensus        98 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           98 QLG-----------DLDGAESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHHHTCGGGH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCCcchH
Confidence            999           99999999999999999886443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.67  E-value=5.4e-16  Score=119.05  Aligned_cols=100  Identities=19%  Similarity=0.183  Sum_probs=93.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.++++++++|+++.+++++|.++..++++          ++|+..|+++++++|+++.+|+++|.+|.
T Consensus        21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH----------EKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL--YQKSLE  128 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~--y~kAle  128 (200)
                      .+|           ++++|+.+|+++++++|++..  +++++.
T Consensus        91 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           91 DMA-----------DYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             Hcc-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            999           999999999999999999864  566554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.67  E-value=6.5e-16  Score=115.76  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=88.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------HHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-------YTL   79 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-------~a~   79 (200)
                      .+-+.+.|++|++.|+++++++|+++.+++++|.++..+|++          ++|+..|++|++++|++.       .+|
T Consensus        17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A           17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF----------AECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH----------HHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            456788999999999999999999999999999999999999          999999999999999874       578


Q ss_pred             HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (200)
Q Consensus        80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k  125 (200)
                      +++|.++..+|           ++++|+++|++++.++|+....++
T Consensus        87 ~~lg~~~~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~  121 (127)
T 4gcn_A           87 SRAGNAFQKQN-----------DLSLAVQWFHRSLSEFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCHHHHHH
Confidence            88899998888           999999999999999998655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=3e-16  Score=121.38  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+...++.|.+.+++++.++|++.+++..+|.++..+|++          ++|+..|+++++++|+++.+++++|.+|..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH----------DKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc----------hhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            3445666666777777777777777777777777766666          777777777777777777777777777777


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      +|           ++++|+.+|++|++++|+++.|+
T Consensus       154 ~g-----------~~~~A~~~~~~al~~~p~~a~~~  178 (184)
T 3vtx_A          154 KG-----------LRDEAVKYFKKALEKEEKKAKYE  178 (184)
T ss_dssp             TT-----------CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred             CC-----------CHHHHHHHHHHHHhCCccCHHHH
Confidence            66           77777777777777777666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.65  E-value=1.6e-16  Score=116.32  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             HhchHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~---~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .++.|++|++.+++++++   +|+++.+++++|.++..+|++          ++|+..|+++++++|+++.+++++|.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~   71 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY----------RKAEAVLANGVKQFPNHQALRVFYAMVL   71 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            357889999999999999   699999999999999999999          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHhC
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLEVS  130 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---~y~kAle~~  130 (200)
                      ...|           ++++|+.+|+++++.+|+++   .|.+++...
T Consensus        72 ~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           72 YNLG-----------RYEQGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHT-----------CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9998           99999999999999999987   445555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.65  E-value=5.2e-16  Score=124.13  Aligned_cols=94  Identities=17%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPL-------DAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---   71 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~-------d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---   71 (200)
                      .+.+++.|++|++.|+++++++|+       +..     +|+++|.++..+|++          ++|+.+|++||++   
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~----------~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF----------DEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhhhc
Confidence            355788999999999999999999       544     999999999999999          9999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           72 ----DPAKHYTL----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        72 ----dP~~~~a~----~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                          +|+++.+|    +++|.++..+|           ++++|+.+|++|++++|++.
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lg-----------r~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcH
Confidence                99999999    99999999999           99999999999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.4e-15  Score=122.20  Aligned_cols=105  Identities=11%  Similarity=-0.006  Sum_probs=94.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTR----------------WGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~----------------lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +-+.+.|++|+..++++++.+|+++++++.                +|.++..+|++          ++|+..|++++++
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~   83 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY----------DKAYLFYKELLQK   83 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHH
Confidence            346678999999999999999999999999                99999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      +|+++++++++|.+|...|           ++++|+.+|+++++++|++             +++|.++|..+..
T Consensus        84 ~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~P~~-------------~~a~~~lg~~~~~  134 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRG-----------QEKDALRMYEKILQLEADN-------------LAANIFLGNYYYL  134 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHH
Confidence            9999999999999999988           9999999999999999876             4556666665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.63  E-value=2.5e-15  Score=115.08  Aligned_cols=100  Identities=12%  Similarity=0.154  Sum_probs=91.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAK------------------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA   68 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~------------------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A   68 (200)
                      .+-+.+.|++|++.|++++.+                  +|.++.+++++|.++..++++          ++|+..+++|
T Consensus        20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------~~A~~~~~~a   89 (162)
T 3rkv_A           20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----------HEAEETSSEV   89 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------HHHHHHHHHH
Confidence            345678999999999999999                  788889999999999999999          9999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 028992           69 LVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-LYQKSL  127 (200)
Q Consensus        69 L~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-~y~kAl  127 (200)
                      |+++|+++.+|+.+|.+|..+|           ++++|+.+|+++++++|++. ..+..+
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAW-----------KLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHh-----------cHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999999999999999999           99999999999999999987 544444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=2.3e-15  Score=115.72  Aligned_cols=102  Identities=14%  Similarity=0.106  Sum_probs=91.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992           19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      ..+++++.++|++++.++++|.++...|++          ++|+..|++++.++|+++.+|+++|.+|..+|        
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------   69 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXY----------EDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--------   69 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--------
Confidence            467888999999999999999999999999          99999999999999999999999999999999        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992           99 AKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                         ++++|+.+|++|+.++|++.                     .|+++++++|+.|+...-..
T Consensus        70 ---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           70 ---QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             ---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             ---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence               99999999999999999885                     67777777777776644333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=9e-15  Score=116.93  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=87.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------HHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-------YTLW   80 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-------~a~~   80 (200)
                      +.+++.|++|++.++++++.+|+++.++.++|.++..+|++          ++|+..|+++++++|+++       .+++
T Consensus        52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN----------QEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999998          999999999999999999       6799


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ++|.++...|           ++++|+.+|+++++++|+
T Consensus       122 ~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          122 KEGQKFQQAG-----------NIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHTT-----------CHHHHHHHHHHHTTSSCH
T ss_pred             HHhHHHHHhc-----------cHHHHHHHHHHHHhcCCC
Confidence            9999999988           999999999999999999

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=1.5e-14  Score=123.87  Aligned_cols=121  Identities=21%  Similarity=0.236  Sum_probs=111.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.|++|++.+++++.++|+++.++.++|.++...|++          ++|+..|+++++++|++++++.++|.++.
T Consensus       213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..|           ++++|+.+|+++++++|++.                     .|++++++.|+.+++|.+++..+..
T Consensus       283 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  351 (388)
T 1w3b_A          283 EKG-----------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHS-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HcC-----------CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            988           99999999999999999986                     7888999999999999999998886


Q ss_pred             ccc
Q 028992          147 QQT  149 (200)
Q Consensus       147 ~~~  149 (200)
                      ++-
T Consensus       352 ~g~  354 (388)
T 1w3b_A          352 QGK  354 (388)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=3.1e-15  Score=143.49  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.++++++++|+++++++++|.+|..+|++          ++|++.|++|++++|+++++|++||.+|.
T Consensus        53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~----------~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV----------QGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           ++++|+.+|++|++++|++.
T Consensus       123 ~~g-----------~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A          123 DSG-----------NIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCSCCH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCCh
Confidence            999           99999999999999999997

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.60  E-value=2.5e-14  Score=122.51  Aligned_cols=40  Identities=10%  Similarity=-0.009  Sum_probs=28.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF   48 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~   48 (200)
                      .+.+.+++|++.+++++.++|+++++++++|.++...|++
T Consensus        78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  117 (388)
T 1w3b_A           78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM  117 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH
Confidence            4556677777777777777777777777777777777766

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=4.7e-14  Score=99.22  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=91.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.++.++|.++...+++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY----------QKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ..|           ++++|+.+|+++++.+|++......+
T Consensus        84 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           84 FLN-----------RFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            999           99999999999999999887544433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=2.7e-15  Score=113.17  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHH
Q 028992           19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        19 ~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      ..+++++.++|++++.++.+|.+++..|++          ++|+..|+++++++|+++.+|+++|.+|...|        
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------   66 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKW----------DDAQKIFQALCMLDHYDARYFLGLGACRQSLG--------   66 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--------
Confidence            467788899999999999999999999998          99999999999999999999999999999999        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCH
Q 028992           99 AKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                         ++++|+.+|++|++++|++.
T Consensus        67 ---~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A           67 ---LYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHCTTCT
T ss_pred             ---hHHHHHHHHHHHHhcCCCCc
Confidence               99999999999999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.59  E-value=2.3e-14  Score=121.42  Aligned_cols=92  Identities=20%  Similarity=0.147  Sum_probs=81.3

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+-+.+.|++|++.+++++..+|+++.+++.+|.++..+|++          ++|+..|+++++++|+++.++.++|.+|
T Consensus        74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE----------QAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            356778999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..+|           ++++|+.+|+++++++|+
T Consensus       144 ~~~g-----------~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A          144 TNTS-----------HQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHCHH
T ss_pred             Hccc-----------cHHHHHHHHHHHHHhCcc
Confidence            9998           666666666666655554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=1.5e-14  Score=106.19  Aligned_cols=91  Identities=19%  Similarity=0.150  Sum_probs=87.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.+++++|.++..++++          ++|+..|+++++++|+++.+++++|.+|.
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B           19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..|           ++++|+.+|+++++++|+
T Consensus        89 ~~~-----------~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           89 EME-----------SYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHh-----------hHHHHHHHHHHHHHHChh
Confidence            999           999999999999999998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.58  E-value=1.3e-14  Score=137.01  Aligned_cols=119  Identities=17%  Similarity=0.153  Sum_probs=111.4

Q ss_pred             HhchHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           10 RLLLSEHNRKTAEANY--------AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~--------~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      ..+.+++|++.+++++        +.+|+++++++++|.++..+|++          ++|+..|+++++++|+++.+|++
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~  472 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDV----------AKATRKLDDLAERVGWRWRLVWY  472 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCH----------HHHHHHHHHHhccCcchHHHHHH
Confidence            3567899999999999        99999999999999999999998          99999999999999999999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHHHHH
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      +|.+|..+|           ++++|+.+|++|++++|++.                    .|+++++++|+.+++|.+++
T Consensus       473 lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          473 RAVAELLTG-----------DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHH
Confidence            999999988           99999999999999999985                    58999999999999999999


Q ss_pred             HHHHhccc
Q 028992          142 KHGINQQT  149 (200)
Q Consensus       142 ~~~~~~~~  149 (200)
                      ..+..++-
T Consensus       542 ~~~~~~g~  549 (681)
T 2pzi_A          542 RARSAEGD  549 (681)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99986653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=2.9e-14  Score=102.86  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=87.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.|++|++.++++++.+|+++.++.++|.++...+++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF----------QLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+.+|+++++.+|++.
T Consensus        96 ~~~-----------~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           96 AMK-----------DYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCGGGT
T ss_pred             HHh-----------hHHHHHHHHHHHHHhCCCch
Confidence            988           99999999999999988763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=1.3e-13  Score=109.19  Aligned_cols=116  Identities=16%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +++.+++|++.++++++.+|+++.++..+|.++...|++          ++|+..|+++++++|+++.+++.+|.++...
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY----------KEAKDMFEKALRAGMENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            344455555555555555555555555555555554444          5555555555555555555555555555554


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      |           ++++|+.+|+++++.+|++.                     .|+++++..|+.+..+..++..+..
T Consensus       139 ~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          139 E-----------QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             S-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             c-----------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4           55555555555555555543                     4444445555555555555555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=6.1e-14  Score=101.85  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=93.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS   81 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~   81 (200)
                      +-+.+.|++|++.++++++.+|+++   ++++++|.++..+|++          ++|+..|+++++++|++   +++++.
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF----------QLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            4567899999999999999999999   8999999999999998          99999999999999999   999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      +|.+|..+|           ++++|+.+|+++++..|++.....+..
T Consensus        82 la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           82 LGLSQYGEG-----------KNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHTT-----------CHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            999999999           999999999999999999986665553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.58  E-value=5.6e-14  Score=105.80  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=107.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|.++.++..+|.++...+++          ++|+..|+++++++|+++.++.++|.++.
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV----------DRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999998888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..|           ++++|+.+|+++++.+|++.                     .|+++++..|..+..+..++..+..
T Consensus        88 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A           88 QVQ-----------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             Hhc-----------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            988           99999999999999999886                     6777788888888999988888875


Q ss_pred             cc
Q 028992          147 QQ  148 (200)
Q Consensus       147 ~~  148 (200)
                      ++
T Consensus       157 ~~  158 (186)
T 3as5_A          157 MG  158 (186)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=3.3e-14  Score=106.55  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=89.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.++.++|.++..++++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      .+|           ++++|+.+|+++++++|++..
T Consensus        93 ~~~-----------~~~~A~~~~~~a~~~~p~~~~  116 (166)
T 1a17_A           93 ALG-----------KFRAALRDYETVVKVKPHDKD  116 (166)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHSTTCHH
T ss_pred             Hhc-----------cHHHHHHHHHHHHHhCCCCHH
Confidence            999           999999999999999999874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.57  E-value=4.3e-14  Score=119.79  Aligned_cols=93  Identities=22%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      +.+++.+++|++.++++++.+|+  ++.+++++|.++..+|++          ++|+..|+++++++|+++.++.++|.+
T Consensus       187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF----------NRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34577899999999999999999  999999999999999998          999999999999999999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |...|           ++++|+.+|+++++++|++.
T Consensus       257 ~~~~g-----------~~~~A~~~~~~al~~~p~~~  281 (365)
T 4eqf_A          257 LANGD-----------RSEEAVEAYTRALEIQPGFI  281 (365)
T ss_dssp             HHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcC-----------CHHHHHHHHHHHHhcCCCch
Confidence            99999           99999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.2e-14  Score=102.78  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      +-+.+.|++|++.++++++.+|++   ..++.++|.++..++++          ++|+..|+++++++|+++.+++++|.
T Consensus        38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY----------DKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            446678999999999999999998   99999999999999998          99999999999999999999999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      +|...|           ++++|+.+|+++++++|++......+
T Consensus       108 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          108 ALEKLG-----------RLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHHT-----------CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            999988           99999999999999999987665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.56  E-value=1.5e-13  Score=98.10  Aligned_cols=93  Identities=22%  Similarity=0.247  Sum_probs=88.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.+++++..+|+++.++..+|.++...+++          ++|+..|+++++++|+++.+++++|.++.
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY----------AGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch----------HHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+.+|+++++.+|++.
T Consensus        92 ~~~-----------~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           92 SLN-----------KHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred             HhC-----------CHHHHHHHHHHHHhcCccch
Confidence            988           99999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.56  E-value=2.9e-14  Score=114.42  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.++++++++|+++++++++|.++..+|++          ++|+..|+++++++|+++++++++|.+|.
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE----------KDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999          99999999999999999999999999987


Q ss_pred             hcCc-------------ccCCh-----------HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGF-------------LTADL-----------SEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~-------------l~~~~-----------~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|.             +.|..           ....++|++|+.+|++|++++|+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            6551             11211           1224578889999999999999865

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.56  E-value=1.9e-13  Score=106.41  Aligned_cols=121  Identities=18%  Similarity=0.147  Sum_probs=110.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|+++.++..+|.++...|++          ++|+..|+++++++|++..++.++|.++.
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN----------DKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hc-CcccCChHHhhcCHHHHHHHHHHHHH--hCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           88 SC-GFLTADLSEAKGDFDKASECFQRAVD--EEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        88 ~~-G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      .. |           ++++|+.+|+++++  .+|++.                     .|+++++..|..+..+..++..
T Consensus        88 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           88 GRLN-----------RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             TTTC-----------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HhcC-----------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            98 8           99999999999999  555544                     7888889999999999999998


Q ss_pred             HHhccc
Q 028992          144 GINQQT  149 (200)
Q Consensus       144 ~~~~~~  149 (200)
                      +..++.
T Consensus       157 ~~~~~~  162 (225)
T 2vq2_A          157 KMLAGQ  162 (225)
T ss_dssp             HHHHTC
T ss_pred             HHHcCC
Confidence            876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.55  E-value=1e-13  Score=116.59  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=107.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      -+.+.+++|++.++++++.+|+  ++.++.++|.++...|++          ++|+..|+++++++|+++.++.++|.++
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~  261 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY----------DKAVDCFTAALSVRPNDYLLWNKLGATL  261 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            3778999999999999999999  899999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC-----------h
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA-----------P  134 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~-----------~  134 (200)
                      ...|           ++++|+.+|+++++++|++.                     .|++++++.|+.           +
T Consensus       262 ~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  330 (368)
T 1fch_A          262 ANGN-----------QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE  330 (368)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence            9998           99999999999999999886                     677777777777           7


Q ss_pred             HHHHHHHHHHHhcc
Q 028992          135 ELHMELHKHGINQQ  148 (200)
Q Consensus       135 e~~~~l~~~~~~~~  148 (200)
                      ..+..++..+..++
T Consensus       331 ~~~~~l~~~~~~~g  344 (368)
T 1fch_A          331 NIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            78888887776443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.55  E-value=5.9e-15  Score=139.32  Aligned_cols=117  Identities=11%  Similarity=0.015  Sum_probs=110.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+++.|++|++.++++++.+|+++++++++|.++..+|++          ++|+..|++|++++|+++.+++++|.+|.
T Consensus       443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY----------DSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      .+|           ++++ +.+|++|++++|++.                     .|+++++++|+.+++|.+++..++.
T Consensus       513 ~~g-----------~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          513 LAG-----------NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHT-----------CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HcC-----------ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            988           9999 999999999999996                     7778888999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.55  E-value=9.4e-14  Score=114.25  Aligned_cols=119  Identities=11%  Similarity=0.072  Sum_probs=104.2

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      -+++.+++|+..++++++.+|+++.+++.+|.++...+ ++          ++|+..|+++++++|+++.++..+|.++.
T Consensus        67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  136 (330)
T 3hym_B           67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN----------EHARRYLSKATTLEKTYGPAWIAYGHSFA  136 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH----------HHHHHHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45667888888888888888888888888888888877 66          89999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..|           ++++|+.+|+++++.+|++.                     .|++++++.|+.+.++.+++..+..
T Consensus       137 ~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          137 VES-----------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHT-----------CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             Hcc-----------CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            988           99999999999999999874                     7888999999999999999998875


Q ss_pred             cc
Q 028992          147 QQ  148 (200)
Q Consensus       147 ~~  148 (200)
                      ++
T Consensus       206 ~~  207 (330)
T 3hym_B          206 NG  207 (330)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=7.6e-14  Score=110.51  Aligned_cols=120  Identities=15%  Similarity=0.226  Sum_probs=106.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+.+.+++|++.++++++.+|+++.++..+|.++...+++          ++|+..|+++++++|++..+++.+|.++..
T Consensus        34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNEL----------ERALAFYDKALELDSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999998          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .|           ++++|+.+|+++++.+|++.                     .|++++++.|+.+.++..++..+..+
T Consensus       104 ~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (243)
T 2q7f_A          104 KE-----------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE  172 (243)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence            88           99999999999999999986                     78889999999999999999988865


Q ss_pred             cc
Q 028992          148 QT  149 (200)
Q Consensus       148 ~~  149 (200)
                      +.
T Consensus       173 ~~  174 (243)
T 2q7f_A          173 GM  174 (243)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=6e-14  Score=102.62  Aligned_cols=95  Identities=15%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      |.+++.+..+|.+++..|++          ++|+..|+++++++|+++.+++++|.+|..+|           ++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~   59 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDW----------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-----------SFPEAIA   59 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-----------CHHHHHH
Confidence            56788999999999999998          99999999999999999999999999999999           9999999


Q ss_pred             HHHHHHHhCCCCH---------------------HHHHHHHhC------CCChHHHHHHHHHH
Q 028992          109 CFQRAVDEEPTNE---------------------LYQKSLEVS------TKAPELHMELHKHG  144 (200)
Q Consensus       109 ~fqkAl~l~P~~~---------------------~y~kAle~~------~k~~e~~~~l~~~~  144 (200)
                      +|+++++++|++.                     .|+++++++      |+.++++..+.+..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            9999999999986                     666677777      66666666666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=4e-14  Score=127.81  Aligned_cols=128  Identities=14%  Similarity=0.096  Sum_probs=109.6

Q ss_pred             HHhchH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLLLS-EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~~f-e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .+++.| ++|++.++++++++|+++++++++|.++..+|++          ++|+.+|++|++++|+ +.++.++|.+|.
T Consensus       113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~-~~~~~~lg~~~~  181 (474)
T 4abn_A          113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV----------TSAHTCFSGALTHCKN-KVSLQNLSMVLR  181 (474)
T ss_dssp             TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred             HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence            345688 9999999999999999999999999999999998          9999999999999999 799999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------HHHHHHHhCC---CChH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------LYQKSLEVST---KAPE  135 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------~y~kAle~~~---k~~e  135 (200)
                      .++  .....+..+++++|+.+|++|++++|++.                             .|+++++++|   ..+.
T Consensus       182 ~~~--~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  259 (474)
T 4abn_A          182 QLQ--TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD  259 (474)
T ss_dssp             TCC--CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred             Hhc--cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence            981  01111222399999999999999999975                             3667778899   9999


Q ss_pred             HHHHHHHHHHhccc
Q 028992          136 LHMELHKHGINQQT  149 (200)
Q Consensus       136 ~~~~l~~~~~~~~~  149 (200)
                      +|.+++..+..++-
T Consensus       260 ~~~~lg~~~~~~g~  273 (474)
T 4abn_A          260 LHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999998886553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.54  E-value=6e-14  Score=127.92  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.+++|++.++++++.+|++++++.++|.++...|++          ++|+..|+++++++|+++.+++++|.+|..+| 
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-   71 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDT----------TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-   71 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence            3578888888888888888888888888888888887          88888888888888888888888888888888 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                                ++++|+.+|+++++++|++.                     .|+++++++|+.++++.+++..+..+
T Consensus        72 ----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           72 ----------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                      88889999999888888886                     77888888888888998888888766

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=7.3e-14  Score=111.01  Aligned_cols=121  Identities=14%  Similarity=0.165  Sum_probs=108.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH----------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD-------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV----------   70 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d-------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~----------   70 (200)
                      +.+++.+++|++.++++++++|++       +.++..+|.++..++++          ++|+..|+++++          
T Consensus        48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL----------KKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCchhHHHHH
Confidence            456789999999999999999988       89999999999999998          666666666666          


Q ss_pred             ----------------hCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------
Q 028992           71 ----------------IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------  121 (200)
Q Consensus        71 ----------------ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------  121 (200)
                                      ++|+++.++..+|.++...|           ++++|+.+|+++++.+|++.             
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  186 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS-----------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL  186 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence                            88889999999999999988           99999999999999999987             


Q ss_pred             --------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          122 --------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       122 --------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                              .|+++++++|+.++++..++..+..++.
T Consensus       187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence                    7888999999999999999998886653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.6e-14  Score=111.27  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.+++++..+|.++.++.++|.++...|++          ++|+..|+++++++|+++.+++++|.+|.
T Consensus       115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  184 (258)
T 3uq3_A          115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW----------PNAVKAYTEMIKRAPEDARGYSNRAAALA  184 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            34455666666666666668999999999999999998888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhC------CCChHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS------TKAPELHMEL  140 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~------~k~~e~~~~l  140 (200)
                      ..|           ++++|+.+|+++++.+|++.                     .|++++++.      |...+++..+
T Consensus       185 ~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          185 KLM-----------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HhC-----------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence            988           99999999999999999987                     566666666      6666666555


Q ss_pred             HH
Q 028992          141 HK  142 (200)
Q Consensus       141 ~~  142 (200)
                      .+
T Consensus       254 ~~  255 (258)
T 3uq3_A          254 YK  255 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=7.6e-14  Score=97.51  Aligned_cols=92  Identities=16%  Similarity=0.064  Sum_probs=88.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a   85 (200)
                      +-+.+.+++|+..++++++.+|.++.++.++|.++..++++          ++|+..|+++++++|+  +..+++++|.+
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A           16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY----------EEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            34677899999999999999999999999999999999998          9999999999999999  99999999999


Q ss_pred             HHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           86 HTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        86 ~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      +... |           ++++|+++|++++..+|++
T Consensus        86 ~~~~~~-----------~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEG-----------KEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSS-----------CSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhC-----------CHHHHHHHHHHHhhcccCC
Confidence            9999 9           9999999999999999975

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=3.3e-13  Score=95.49  Aligned_cols=94  Identities=27%  Similarity=0.431  Sum_probs=88.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|++.+++++..+|+++.++..+|.++...+++          ++|+..|+++++++|+++.+++.+|.+|.
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      ..|           ++++|+.+|+++++.+|++..
T Consensus        89 ~~~-----------~~~~A~~~~~~~~~~~~~~~~  112 (125)
T 1na0_A           89 KQG-----------DYDEAIEYYQKALELDPNNAE  112 (125)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHH
T ss_pred             Hhc-----------CHHHHHHHHHHHHHhCCCcHH
Confidence            988           999999999999999887754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.53  E-value=3e-13  Score=113.69  Aligned_cols=91  Identities=20%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|+++.+++.+|.++...|++          ++|+..|+++++++|+++.+++.+|.+|.
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE----------LLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..|           ++++|+.+|+++++.+|+
T Consensus       144 ~~g-----------~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A          144 NES-----------LQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHTSTT
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCcC
Confidence            988           555555555555555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.53  E-value=2e-13  Score=113.01  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|++++++..+|.++..+|++          ++|+..|+++++++|+++.++..+|.++.
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS----------KAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999888          89999999999999999999999999998


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      ..|           ++++|+.+|+++++.+|
T Consensus        83 ~~~-----------~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           83 KQG-----------KLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHT-----------CHHHHHHHHHHHHTSCC
T ss_pred             HcC-----------ChHHHHHHHHHHHhcCC
Confidence            888           66666666666666666

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=4.4e-14  Score=127.55  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=108.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.++++++++|+ +.++.++|.++..+.. ....+..+.+++|+..|++|++++|+++.+|++||.+|.
T Consensus       147 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  224 (474)
T 4abn_A          147 YWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL  224 (474)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999 7999999999998711 000111133399999999999999999999999999999


Q ss_pred             hc--------CcccCChHHhhcCHHHHHHHHHHHHHhCC---CCH---------------------HHHHHHHhCCCChH
Q 028992           88 SC--------GFLTADLSEAKGDFDKASECFQRAVDEEP---TNE---------------------LYQKSLEVSTKAPE  135 (200)
Q Consensus        88 ~~--------G~l~~~~~~a~~~~d~A~~~fqkAl~l~P---~~~---------------------~y~kAle~~~k~~e  135 (200)
                      .+        |           ++++|+.+|++|++++|   ++.                     .|+++++++|+.++
T Consensus       225 ~~~~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          225 SLYFNTGQNPK-----------ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHTTCCHH-----------HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhccccc-----------hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            87        6           99999999999999999   775                     88999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028992          136 LHMELHKHGINQ  147 (200)
Q Consensus       136 ~~~~l~~~~~~~  147 (200)
                      ++.+++..+..+
T Consensus       294 a~~~l~~~~~~l  305 (474)
T 4abn_A          294 PQQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999877543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=2.9e-13  Score=109.01  Aligned_cols=109  Identities=21%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+++.+++|++.++++++.+|+++.++.++|.++...|++          ++|+..|+++++++|+++.+++++|.+|..
T Consensus        54 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           54 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998888          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHhCCCChHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHM  138 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAle~~~k~~e~~~  138 (200)
                      .|           ++++|+.+|+++++++|++.                    .|++++...|..+..+.
T Consensus       124 ~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  182 (275)
T 1xnf_A          124 GG-----------RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN  182 (275)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred             hc-----------cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH
Confidence            88           99999999999999999886                    45566666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.53  E-value=5.3e-14  Score=108.46  Aligned_cols=92  Identities=10%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-HT   87 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-~~   87 (200)
                      -..+.+++|++.++++++.+|++++++..+|.++...+++          ++|+..|+++++++|+++.+++++|.+ +.
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~l~~   90 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY----------SNSLLAYRQALQLRGENAELYAALATVLYY   90 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999999988          999999999999999999999999999 77


Q ss_pred             hcCcccCChHHhhcCH--HHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDF--DKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~--d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++  ++|+.+|+++++.+|++.
T Consensus        91 ~~~-----------~~~~~~A~~~~~~al~~~p~~~  115 (177)
T 2e2e_A           91 QAS-----------QHMTAQTRAMIDKALALDSNEI  115 (177)
T ss_dssp             HTT-----------TCCCHHHHHHHHHHHHHCTTCH
T ss_pred             hcC-----------CcchHHHHHHHHHHHHhCCCcH
Confidence            888           88  999999999999998875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.52  E-value=2e-13  Score=109.35  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=108.8

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+.+.+++|++.++++++.+|+++.++..+|.++...+++          ++|+..|+++++++|++..++.++|.+|..
T Consensus        48 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           48 LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP----------KLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999888          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHH--hCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVD--EEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      .|           ++++|+.+|+++++  .+|++.                     .|++++++.|..+.++..++..+.
T Consensus       118 ~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          118 QK-----------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             TT-----------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             Hh-----------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            88           99999999999999  777765                     778888999999999999999887


Q ss_pred             hcc
Q 028992          146 NQQ  148 (200)
Q Consensus       146 ~~~  148 (200)
                      .++
T Consensus       187 ~~g  189 (252)
T 2ho1_A          187 KER  189 (252)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.52  E-value=6.3e-15  Score=127.57  Aligned_cols=118  Identities=15%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--------------
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--------------   75 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--------------   75 (200)
                      .|..|++|++.++.++..+|+++..+.++|.+++..+++          ++|+..|++|++++|++              
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~----------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  194 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKY----------KQALLQYKKIVSWLEYESSFSNEEAQKAQAL  194 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence            356778888888899999999999999999999999998          99999999999999999              


Q ss_pred             -HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992           76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA  133 (200)
Q Consensus        76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~  133 (200)
                       ..+++++|.+|..+|           ++++|+.+|++|++++|++.                     .|+++++++|+.
T Consensus       195 ~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQ-----------AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence             699999999999999           99999999999999999997                     788999999999


Q ss_pred             hHHHHHHHHHHHhcc
Q 028992          134 PELHMELHKHGINQQ  148 (200)
Q Consensus       134 ~e~~~~l~~~~~~~~  148 (200)
                      ++++.+++..+..++
T Consensus       264 ~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          264 KAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998776443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=2.3e-13  Score=107.34  Aligned_cols=97  Identities=16%  Similarity=0.103  Sum_probs=90.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~----------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +-+.+.|++|++.+++++.+.|.++                .+++++|.++..++++          ++|+..|++++++
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~  117 (198)
T 2fbn_A           48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY----------PKAIDHASKVLKI  117 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHh
Confidence            4567899999999999999999998                8999999999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k  125 (200)
                      +|+++.+++++|.+|..+|           ++++|+.+|+++++++|++...+.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~  160 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFG-----------FLEEAKENLYKAASLNPNNLDIRN  160 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHCCCcHHHHH
Confidence            9999999999999999988           999999999999999998864433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.51  E-value=2.7e-14  Score=103.37  Aligned_cols=85  Identities=20%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      ++|++.++++++.+|+++.+++++|.++...|++          ++|+..|+++++++|+++.+++++|.+|...|    
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----   67 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF----------DAALPHLRAALDFDPTYSVAWKWLGKTLQGQG----   67 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC----
Confidence            4678899999999999999999999999999998          99999999999999999999999999999988    


Q ss_pred             ChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           95 DLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        95 ~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                             ++++|+.+|+++++++|++
T Consensus        68 -------~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           68 -------DRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHH
T ss_pred             -------CHHHHHHHHHHHHHhcccc
Confidence                   9999999999999998854

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=3.8e-13  Score=110.46  Aligned_cols=120  Identities=14%  Similarity=0.116  Sum_probs=107.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|++.++++++.+|.++.++..+|.++...|++          ++|+..|+++++++|+++.++.++|.++.
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  217 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY----------DSAAANLRRAVELRPDDAQLWNKLGATLA  217 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCC------------Ch
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK------------AP  134 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k------------~~  134 (200)
                      ..|           ++++|+.+|+++++.+|++.                     .|++++++.|+            .+
T Consensus       218 ~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  286 (327)
T 3cv0_A          218 NGN-----------RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR  286 (327)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence            988           99999999999999999986                     66777777777            67


Q ss_pred             HHHHHHHHHHHhcc
Q 028992          135 ELHMELHKHGINQQ  148 (200)
Q Consensus       135 e~~~~l~~~~~~~~  148 (200)
                      ..+..++..+..++
T Consensus       287 ~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          287 SMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            77777777776443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.51  E-value=1.8e-13  Score=112.53  Aligned_cols=119  Identities=14%  Similarity=0.064  Sum_probs=106.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC---------CCCHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID---------PAKHYT   78 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld---------P~~~~a   78 (200)
                      +.+++.+++|++.++++++.+|+++.++..+|.++...+++          ++|+..|++++++.         |..+.+
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  238 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW----------KTAEKWFLDALEKIKAIGNEVTVDKWEPL  238 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHhhhccccccccHHHHH
Confidence            44667888999999999999999999999999999988888          99999999999997         788899


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHH
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELH  137 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~  137 (200)
                      ++++|.+|...|           ++++|+.+|+++++++|++.                     .|+++++++|+.+..+
T Consensus       239 ~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  307 (330)
T 3hym_B          239 LNNLGHVCRKLK-----------KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV  307 (330)
T ss_dssp             HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred             HHHHHHHHHHhc-----------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence            999999999999           99999999999999999985                     7777888899999999


Q ss_pred             HHHHHHHHhc
Q 028992          138 MELHKHGINQ  147 (200)
Q Consensus       138 ~~l~~~~~~~  147 (200)
                      ..++..+..+
T Consensus       308 ~~l~~~~~~~  317 (330)
T 3hym_B          308 TMLGHCIEMY  317 (330)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9999887533

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.51  E-value=2.4e-13  Score=117.65  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---------------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +-+++.|++|++.|++++.++|++               +.+++++|.++..++++          ++|+..|++|++++
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~  226 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF----------SAAIESCNKALELD  226 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence            456789999999999999999999               79999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 028992           73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK  125 (200)
Q Consensus        73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~k  125 (200)
                      |+++.+++++|.+|..+|           ++++|+.+|++|++++|++.....
T Consensus       227 p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~a~~  268 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKT  268 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999           999999999999999999984433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=1.4e-13  Score=105.39  Aligned_cols=96  Identities=24%  Similarity=0.307  Sum_probs=88.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      .++.+++.++.+|.+++..+++          ++|+..|+++++++|+++.+++++|.+|..+|           ++++|
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A   64 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEY----------SKAIDLYTQALSIAPANPIYLSNRAAAYSASG-----------QHEKA   64 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-----------CHHHH
Confidence            4567899999999999999998          99999999999999999999999999999999           99999


Q ss_pred             HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992          107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      +.+|+++++++|++.                     .|+++++++|+.++.|.+.+..
T Consensus        65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            999999999999987                     8889999999999977666643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.51  E-value=5.2e-13  Score=115.46  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.++++++.+|+++.+++.+|.++..+|++          ++|+..|+++++++|+++.+++.+|.+|.
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS----------KAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      .+|           ++++|+.+|+++++.+|++
T Consensus       106 ~~g-----------~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          106 KQG-----------KLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HTT-----------CHHHHHHHHHHHHTSCCCH
T ss_pred             HcC-----------CHHHHHHHHHHHHhcCCCC
Confidence            988           6667777776666666654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=2e-13  Score=115.32  Aligned_cols=115  Identities=10%  Similarity=0.070  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCc
Q 028992           14 SEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGF   91 (200)
Q Consensus        14 fe~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~~~G~   91 (200)
                      +++|+..++++++ ++|++..+|.++|.++...|++          ++|+..|+++++++|++++ +|.++|.++..+| 
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-  148 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-  148 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhc-
Confidence            5999999999999 7999999999999999998888          9999999999999999997 9999999999988 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                                ++++|..+|++|++.+|.+.                      .|+++++.+|+.++++.+++..+..++.
T Consensus       149 ----------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  218 (308)
T 2ond_A          149 ----------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             ----------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence                      99999999999999988652                      6788999999999999999988876553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=1.3e-13  Score=111.41  Aligned_cols=129  Identities=15%  Similarity=0.088  Sum_probs=101.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc---------------------------ccccHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------------------SKKIINEA   61 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~---------------------------~~~~~~eA   61 (200)
                      -+.+.|++|++.++++++.+|+++.++..+|.++..+|++..+.+                           ..+.+++|
T Consensus        14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A   93 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA   93 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence            345667777777777777777777777777777777666543210                           11345899


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------------
Q 028992           62 ISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------  121 (200)
Q Consensus        62 i~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------------  121 (200)
                      +..|+++++++|+++.++.++|.+|...|           ++++|+.+|+++++.+|++.                    
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKG-----------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988           99999999999999999886                    


Q ss_pred             -HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          122 -LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       122 -~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                       .|++++++.|+.+..+..++..+..++
T Consensus       163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          163 SSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence             567788899999999999998887654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.51  E-value=3e-13  Score=110.55  Aligned_cols=93  Identities=19%  Similarity=0.127  Sum_probs=86.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS   81 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~   81 (200)
                      +-+.+.|++|++.++++++.+|++   +++++.+|.++..+|++          ++|+..|+++++++|++   +.+++.
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY----------LLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            446789999999999999999999   99999999999999998          99999999999998855   679999


Q ss_pred             HHHHHHh--------cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           82 LGNAHTS--------CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        82 LG~a~~~--------~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +|.++..        .|           ++++|+.+|+++++.+|++.
T Consensus        95 lg~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQT-----------DTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHCCCTTSCCH-----------HHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHhcccccccch-----------hHHHHHHHHHHHHHHCcCch
Confidence            9999999        78           99999999999999999974

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.50  E-value=8.3e-13  Score=105.78  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=110.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV--IDPAKHYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~--ldP~~~~a~~~LG~a   85 (200)
                      +.+++.+++|++.++++++.+|+++.++.++|.++...|++          ++|+..|+++++  .+|.+..+++++|.+
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY----------EEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            45678999999999999999999999999999999999988          999999999999  899999999999999


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      +...|           ++++|+.+|+++++.+|++.                     .|+++++..|..+..+..++..+
T Consensus       151 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          151 SLQMK-----------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             HHHTT-----------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHcC-----------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            99988           99999999999999999986                     67788888999999998888887


Q ss_pred             Hhcc
Q 028992          145 INQQ  148 (200)
Q Consensus       145 ~~~~  148 (200)
                      ..++
T Consensus       220 ~~~g  223 (252)
T 2ho1_A          220 KVFE  223 (252)
T ss_dssp             HHTT
T ss_pred             HHcc
Confidence            7544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.49  E-value=1e-13  Score=112.06  Aligned_cols=96  Identities=15%  Similarity=0.152  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      |++.+++.|.++...|++          ++|+..|+++++++|+++.+++.+|.+|...|           ++++|+.+|
T Consensus         2 n~~~~~~~a~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~   60 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNY----------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-----------KYDLAQKDI   60 (272)
T ss_dssp             ---CHHHHHHHHHTTTCH----------HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-----------hHHHHHHHH
Confidence            467889999999999998          99999999999999999999999999999988           888888888


Q ss_pred             HHHHHhCCCCH-------------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          111 QRAVDEEPTNE-------------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       111 qkAl~l~P~~~-------------------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      +++++ .|++.                         .|+++++++|..+.++.+++..+..++
T Consensus        61 ~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  122 (272)
T 3u4t_A           61 ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG  122 (272)
T ss_dssp             HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence            88887 33322                         677777888888888888887776544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=7.3e-13  Score=115.69  Aligned_cols=120  Identities=10%  Similarity=0.115  Sum_probs=106.7

Q ss_pred             HHHhchHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-------
Q 028992            8 FDRLLLSEHNRKTAEANYAK---------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~---------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-------   71 (200)
                      +.+++.+++|++.+++++++         +|....++.++|.++..+|++          ++|+..|++++++       
T Consensus        61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~----------~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL----------SDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhHhcccc
Confidence            35678999999999999986         788899999999999999998          9999999999998       


Q ss_pred             -CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHH
Q 028992           72 -DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKS  126 (200)
Q Consensus        72 -dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kA  126 (200)
                       ++..+.++.++|.++...|         +++|++|+.+|++|++++|++.                        .|+++
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~---------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a  201 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCG---------GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA  201 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHC---------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence             4567899999999988876         5689999999999999999986                        67899


Q ss_pred             HHhCCCChHHHHHHHHHHHh
Q 028992          127 LEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus       127 le~~~k~~e~~~~l~~~~~~  146 (200)
                      ++++|+.+.++.+++..+..
T Consensus       202 l~l~p~~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          202 IRLNPDNQYLKVLLALKLHK  221 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHH
T ss_pred             hhcCCcchHHHHHHHHHHHH
Confidence            99999999999999876643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.49  E-value=1.6e-12  Score=92.36  Aligned_cols=93  Identities=26%  Similarity=0.426  Sum_probs=87.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.+++++..+|+++..+..+|.++...+++          ++|+..|++++.++|+++.+++++|.++.
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+.+|+++++.+|++.
T Consensus        81 ~~~-----------~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           81 KQG-----------DYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             TTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             Hhc-----------CHHHHHHHHHHHHHhCCCCh
Confidence            988           99999999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.49  E-value=3.2e-13  Score=113.72  Aligned_cols=118  Identities=18%  Similarity=0.120  Sum_probs=102.9

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+-+.+.|++|++.+++++..+|+++.+++++|.++..+|++          ++|+..|++|++++|+++.+++++|.+|
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A           13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            355778999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      ..+|           ++++|+.+|+++++++|++.                  ..+......+..++++.-++..+.
T Consensus        83 ~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~  148 (281)
T 2c2l_A           83 LEME-----------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIA  148 (281)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999           99999999999999999873                  112222446777777777766553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.48  E-value=8.3e-13  Score=109.25  Aligned_cols=120  Identities=13%  Similarity=0.067  Sum_probs=111.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC---CCHHHHHHH--
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP---AKHYTLWSL--   82 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP---~~~~a~~~L--   82 (200)
                      +-+++.+++|++.++++++.+|+++.++..+|.++...|++          ++|+..|+++++++|   +++.++..+  
T Consensus        47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL----------DEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          999999999999999   999999888  


Q ss_pred             ----------HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCC
Q 028992           83 ----------GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST  131 (200)
Q Consensus        83 ----------G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~  131 (200)
                                |.++...|           ++++|+.+|+++++.+|++.                     .|+++++..|
T Consensus       117 ~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  185 (359)
T 3ieg_A          117 ADEMQRLRSQALDAFDGA-----------DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS  185 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                      68888888           99999999999999999986                     7888889999


Q ss_pred             CChHHHHHHHHHHHhcc
Q 028992          132 KAPELHMELHKHGINQQ  148 (200)
Q Consensus       132 k~~e~~~~l~~~~~~~~  148 (200)
                      +.++.+..++..+..++
T Consensus       186 ~~~~~~~~la~~~~~~~  202 (359)
T 3ieg_A          186 DNTEAFYKISTLYYQLG  202 (359)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            99999999999887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=2.5e-13  Score=101.55  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~  109 (200)
                      +.+.++.++|.+++..|+|          ++|+.+|++|++++|+++.+|.++|.+|..+|           +|++|+.+
T Consensus         6 d~A~a~~~lG~~~~~~~~~----------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-----------~~~~A~~~   64 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDF----------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-----------KFAECVQF   64 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-----------hHHHHHHH
Confidence            4467788999999999999          99999999999999999999999999999999           99999999


Q ss_pred             HHHHHHhCCCCH
Q 028992          110 FQRAVDEEPTNE  121 (200)
Q Consensus       110 fqkAl~l~P~~~  121 (200)
                      |++|++++|++.
T Consensus        65 ~~~al~~~~~~~   76 (127)
T 4gcn_A           65 CEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHhCcccc
Confidence            999999998763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=1.3e-12  Score=101.70  Aligned_cols=118  Identities=15%  Similarity=0.187  Sum_probs=105.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCCcccccccccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-SQFESVSDSKKIINEAISKFEEALV--IDPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-~~~~~~~~~~~~~~eAi~~le~AL~--ldP~~~~a~~~LG~   84 (200)
                      +.+++.+++|++.+++++..+|+++.++.++|.++... |++          ++|+..|+++++  .+|.+..+++++|.
T Consensus        52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~  121 (225)
T 2vq2_A           52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP----------AESMAYFDKALADPTYPTPYIANLNKGI  121 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence            45678899999999999999999999999999999998 888          999999999999  77888999999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCC-CChHHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST-KAPELHMELHK  142 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~-k~~e~~~~l~~  142 (200)
                      ++...|           ++++|+.+|+++++.+|++.                     .|+++++..| ..+..+..++.
T Consensus       122 ~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  190 (225)
T 2vq2_A          122 CSAKQG-----------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK  190 (225)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            999988           99999999999999999986                     6778888888 88888876666


Q ss_pred             HHHh
Q 028992          143 HGIN  146 (200)
Q Consensus       143 ~~~~  146 (200)
                      ....
T Consensus       191 ~~~~  194 (225)
T 2vq2_A          191 IAKA  194 (225)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.48  E-value=4.4e-13  Score=122.17  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.++++++++|++++++.++|.++..+|++          ++|+..|+++++++|+++.+++++|.+|.
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH----------AEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHM  138 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~  138 (200)
                      ..|           ++++|+++|+++++++|++.                        .|+++++.+|+....+.
T Consensus       103 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  166 (568)
T 2vsy_A          103 DAG-----------QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA  166 (568)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence            988           99999999999999999885                        56677777777654443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=6.6e-13  Score=94.88  Aligned_cols=91  Identities=14%  Similarity=0.166  Sum_probs=86.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------HHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------HYTLW   80 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------~~a~~   80 (200)
                      +-+.+.+++|+..+++++..+|+++.++.++|.++...+++          ++|+..|++++.++|++       +.+++
T Consensus        14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A           14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999988       99999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ++|.+|...|           ++++|+.+|+++++.+|+
T Consensus        84 ~la~~~~~~~-----------~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           84 RIGNSYFKEE-----------KYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHTT-----------CHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhc-----------cHHHHHHHHHHHHHhCCC
Confidence            9999999998           999999999999999985

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=1e-12  Score=98.76  Aligned_cols=93  Identities=18%  Similarity=0.294  Sum_probs=89.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|++.++++++.+|+++.++..+|.++...+++          ++|+..|+++++++|+++.+++.+|.++.
T Consensus        52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY----------DLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..|           ++++|+.+|+++++.+|++.
T Consensus       122 ~~~-----------~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A          122 NLG-----------RFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HcC-----------cHHHHHHHHHHHHhcCccch
Confidence            988           99999999999999999987

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=4.6e-13  Score=107.86  Aligned_cols=110  Identities=25%  Similarity=0.193  Sum_probs=100.7

Q ss_pred             hchHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+.|++|++.++++++.    +|.++.+++.+|.++...|++          ++|+..|+++++++|+++.++..+|.+|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~   87 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYL   87 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            46899999999999998    467889999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~  141 (200)
                      ...|           ++++|+.+|+++++++|++.                     .|++++++.|+.+..+..++
T Consensus        88 ~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A           88 TQAG-----------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcc-----------CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9998           99999999999999999986                     78889999999986665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=2.1e-12  Score=105.97  Aligned_cols=120  Identities=19%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++..+|+++.++..+|.++...|++          ++|+..|+++++++|++..++..+|.+|.
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHHhCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------------LYQKSLEVST  131 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------------------~y~kAle~~~  131 (200)
                      ..|           ++++|+.+|+++++.+|++.                                    .|+++++..|
T Consensus       101 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A          101 NEH-----------NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HcC-----------CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            988           88888888888888887642                                    3667777888


Q ss_pred             CChHHHHHHHHHHHhcc
Q 028992          132 KAPELHMELHKHGINQQ  148 (200)
Q Consensus       132 k~~e~~~~l~~~~~~~~  148 (200)
                      ..+.++..++..+..++
T Consensus       170 ~~~~~~~~la~~~~~~~  186 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSN  186 (327)
T ss_dssp             TCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            88888888888776544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=7.4e-14  Score=121.08  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=81.4

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDA-----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~-----------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +.+.|++|+..|++++.++|++.                 .+++++|.+++.++++          ++|+..|++||+++
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~  260 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY----------DEAIGHCNIVLTEE  260 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHHC
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence            45689999999999999999988                 4999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      |+++.+|+++|.+|..+|           ++++|+.+|++|++++|++...+..|
T Consensus       261 p~~~~a~~~lg~a~~~~g-----------~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELG-----------QMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            999999999999999999           99999999999999999987555444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.47  E-value=7.6e-13  Score=103.87  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=88.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-----------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-----------   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-----------   76 (200)
                      +-+++.+++|++.+++++.++|+++.+++++|.++..+|++          ++|+..|+++++++|++.           
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            45788999999999999999999999999999999999998          999999999999998877           


Q ss_pred             -----HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           77 -----YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        77 -----~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                           .+++++|.+|...|           ++++|+.+|+++++++|++.
T Consensus       117 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKE-----------EWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCSGG
T ss_pred             CccchHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCcccc
Confidence                 99999999999999           99999999999999999763

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.45  E-value=7.6e-13  Score=116.68  Aligned_cols=149  Identities=14%  Similarity=0.087  Sum_probs=123.6

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+.+.+++|++.+++++..+|+ +.++..+|.++...+++          ++|+..|+++++++|+++.++..+|.+|..
T Consensus       254 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS----------QEFFKFFQKAVDLNPEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH----------HHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence            4556789999999999999999 99999999999999998          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .|           ++++|+.+|+++++.+|++.                     .|+++++..|+.++++..++..+..+
T Consensus       323 ~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (537)
T 3fp2_A          323 LQ-----------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR  391 (537)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            98           99999999999999999985                     78889999999999999999998866


Q ss_pred             cccCCCCCcch--hhhhcccccchhhhhhhHHHHH
Q 028992          148 QTLGGGSSASS--AQSSKKKSSDLKYDIFGWAILA  180 (200)
Q Consensus       148 ~~~~~~~~~~~--~~~~~~~~~~~~y~~~g~~~l~  180 (200)
                      +-. ..+....  .....+.+.+.++.++.+..+|
T Consensus       392 g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a  425 (537)
T 3fp2_A          392 GDF-DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA  425 (537)
T ss_dssp             TCH-HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred             CCH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence            532 1122222  2333455666666555444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.45  E-value=1.2e-12  Score=105.62  Aligned_cols=105  Identities=10%  Similarity=0.002  Sum_probs=86.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---HHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW   80 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---a~~   80 (200)
                      .+-+.+.|++|++.+++++..+|++   .++++++|.++..+|++          ++|+..|+++++++|+++.   +++
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3456789999999999999999987   47999999999999998          9999999999999999875   899


Q ss_pred             HHHHHHHhcCc-------ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           81 SLGNAHTSCGF-------LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        81 ~LG~a~~~~G~-------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|.++...|.       ..+......+++++|+.+|+++++.+|++.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99999876320       001111123489999999999999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=5.9e-13  Score=116.26  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..|++|++.++++++++|+++++++.+|.++..++++       +..++|++.|++|++++|+++.++.++|.++...+ 
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~-  223 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR-  223 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS-------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH-
Confidence            3699999999999999999999999999998776544       12278999999999999999999999998876654 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                            ...+++++|+.+|++++..+|++.                     .|++++++.|+.+.+|.+++..+.
T Consensus       224 ------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          224 ------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             ------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence                  223478899999999999999986                     788999999999999999997664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=3.3e-12  Score=90.23  Aligned_cols=99  Identities=32%  Similarity=0.542  Sum_probs=85.6

Q ss_pred             hCCCC-HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992           27 KDPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK  105 (200)
Q Consensus        27 ~~P~d-~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~  105 (200)
                      .+|.+ +.+++.+|.++...+++          ++|+..|+++++++|++..+++.+|.++...|           ++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~   61 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDE   61 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-----------CHHH
Confidence            46766 88999999999999988          99999999999999999999999999999988           9999


Q ss_pred             HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992          106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus       106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      |+.+|+++++.+|++.                     .|+++++++|..+.++.+++.....
T Consensus        62 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            9999999999999886                     6677777888888888887776553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.44  E-value=2.3e-13  Score=106.93  Aligned_cols=89  Identities=16%  Similarity=0.050  Sum_probs=82.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.+++++  +| ++.+++++|.++..+|++          ++|+..|+++++++|+++.+++++|.+|.
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNM----------TEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            346789999999999985  44 889999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      ..|           ++++|+.+|++++++.|++
T Consensus        83 ~~~-----------~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           83 QTE-----------KYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHTTTTC
T ss_pred             Hcc-----------cHHHHHHHHHHHHHhCCCc
Confidence            999           9999999999999998875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.44  E-value=7.3e-13  Score=119.36  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---------------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +-+.+.|++|+..|+++++++|++               ..+++++|.+++.++++          ++|+..|++||+++
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~~  347 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY----------TKAVECCDKALGLD  347 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHS
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcC
Confidence            456789999999999999999999               79999999999999999          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |+++.+|+++|.+|..+|           ++++|+.+|++|++++|++.
T Consensus       348 p~~~~a~~~~g~a~~~~g-----------~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTC----
T ss_pred             CccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999           99999999999999999987

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.44  E-value=1.3e-12  Score=93.08  Aligned_cols=101  Identities=20%  Similarity=0.364  Sum_probs=90.5

Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992           26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK  105 (200)
Q Consensus        26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~  105 (200)
                      +.+|.++..+..+|.++...+++          ++|+..|+++++++|+++.+++.+|.++...|           ++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~   64 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENF----------EAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-----------NYAG   64 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-----------chHH
Confidence            45677889999999999999998          99999999999999999999999999999988           9999


Q ss_pred             HHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       106 A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      |+.+|+++++.+|++.                     .|++++++.|+.+.++..++..+..+
T Consensus        65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            9999999999999986                     67778888888888888888776643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.44  E-value=1.6e-12  Score=95.22  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHH
Q 028992           26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK  105 (200)
Q Consensus        26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~  105 (200)
                      ..+|.+++.+..+|.++...+++          ++|+..|+++++++|+++.+++++|.++..+|           ++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----------~~~~   61 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQ   61 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-----------CHHH
Confidence            45789999999999999999998          99999999999999999999999999999999           9999


Q ss_pred             HHHHHHHHHHhCCCCH
Q 028992          106 ASECFQRAVDEEPTNE  121 (200)
Q Consensus       106 A~~~fqkAl~l~P~~~  121 (200)
                      |+.+|+++++++|++.
T Consensus        62 A~~~~~~al~~~p~~~   77 (137)
T 3q49_B           62 ALADCRRALELDGQSV   77 (137)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhCchhH
Confidence            9999999999999865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.44  E-value=2.3e-12  Score=115.61  Aligned_cols=117  Identities=19%  Similarity=0.155  Sum_probs=103.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCC-HHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAK-HYTLW   80 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~-~~a~~   80 (200)
                      +.+.+.+++|++.++++++.+|.++.+++.+|.++...|++          ++|+..|++++++      +|++ ..++.
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM----------QTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            34567788888888888888888888888888888887777          9999999999999      7775 78999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHH
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~  139 (200)
                      ++|.+|..+|           ++++|+.+|+++++++|++.                     .|+++++++|+.++.+..
T Consensus       521 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          521 NLGHAYRKLK-----------MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             HHHHHHHHTT-----------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhc-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            9999999999           99999999999999999986                     788999999999999999


Q ss_pred             HHHHHH
Q 028992          140 LHKHGI  145 (200)
Q Consensus       140 l~~~~~  145 (200)
                      +++.+.
T Consensus       590 l~~~~~  595 (597)
T 2xpi_A          590 LKRALE  595 (597)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.44  E-value=2.1e-13  Score=97.73  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=67.6

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      .+|+++.+++++|.++..+|++          ++|+..|+++++++|+++.+|+++|.+|...|           ++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----------~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNA----------SRALALFEELVETDPDYVGTYYHLGKLYERLD-----------RTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-----------CHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHH
Confidence            5899999999999999999998          99999999999999999999999999999999           99999


Q ss_pred             HHHHHHHHHhCCCC
Q 028992          107 SECFQRAVDEEPTN  120 (200)
Q Consensus       107 ~~~fqkAl~l~P~~  120 (200)
                      +.+|++++++.|++
T Consensus        61 ~~~~~~al~l~~~~   74 (100)
T 3ma5_A           61 IDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcC
Confidence            99999999997754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=2.4e-12  Score=99.06  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=87.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEA-LLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~a-l~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.+++.+++|++.++++++++|+++.++.++|.+ +...+++.        .++|+..|+++++++|+++.+++++|.+|
T Consensus        54 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           54 YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM--------TAQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc--------hHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3567899999999999999999999999999999 66766631        18999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      ...|           ++++|+.+|+++++++|++..
T Consensus       126 ~~~g-----------~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          126 FMQA-----------NYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHcc-----------cHHHHHHHHHHHHhhCCCCcc
Confidence            9998           999999999999999999853

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.42  E-value=8.3e-13  Score=111.34  Aligned_cols=98  Identities=10%  Similarity=0.113  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      |.+++.+..+|..+...|++          ++|+..|+++++++|++++++++||.+|...|           ++++|+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~~  172 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNY----------TDALPLLXDAWQLSNQNGEIGLLLAETLIALN-----------RSEDAEA  172 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCH----------HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-----------CHHHHHH
Confidence            55555555555555555555          55555555555555555555555555555555           5555555


Q ss_pred             HHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          109 CFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       109 ~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      +|++++..+|++.                     .|+++++.+|+.++++++++..+..+
T Consensus       173 ~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~  232 (287)
T 3qou_A          173 VLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV  232 (287)
T ss_dssp             HHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            5555555555332                     34555555555555555555555433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.42  E-value=2.8e-12  Score=110.82  Aligned_cols=130  Identities=9%  Similarity=0.025  Sum_probs=102.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccc------------------------ccccHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAIS   63 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~------------------------~~~~~~eAi~   63 (200)
                      +-+.+.+++|++.++++++.+|.++.+++.+|.++...|++..+..                        ..+.+++|+.
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  232 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS  232 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5566677777777777777777777777777777777776654321                        1245699999


Q ss_pred             HHHHHHHhCCCCHHHHHHH------------HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------
Q 028992           64 KFEEALVIDPAKHYTLWSL------------GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------  121 (200)
Q Consensus        64 ~le~AL~ldP~~~~a~~~L------------G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------  121 (200)
                      .|+++++++|++..++..+            |.++...|           ++++|+.+|+++++++|++.          
T Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-----------RYTDATSKYESVMKTEPSIAEYTVRSKERI  301 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999999999988777            99999988           99999999999999988863          


Q ss_pred             ---------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          122 ---------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       122 ---------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                                     .|++++++.|+.+.++..++..+..++
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence                           667777888888888888888887544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.41  E-value=4.1e-13  Score=104.35  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=87.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCccccccc----------------c--------cHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK----------------K--------IINEAIS   63 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~----------------~--------~~~eAi~   63 (200)
                      +-+.+.+++|+..++++++.+|+++++++++|.++...|++..+....                .        ...+|+.
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            456789999999999999999999999999999999999874321100                0        0123577


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHH
Q 028992           64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        64 ~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      .|+++++++|+++.+++++|.++...|           ++++|+.+|+++++.+|++           ..+.++.+++..
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~-----------~~~~a~~~l~~~  153 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVG-----------RDEEALELLWNILKVNLGA-----------QDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCTTT-----------TTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHhCccc-----------ChHHHHHHHHHH
Confidence            777777777777777777777777777           7777777777777777753           235577777776


Q ss_pred             HHhcc
Q 028992          144 GINQQ  148 (200)
Q Consensus       144 ~~~~~  148 (200)
                      +..++
T Consensus       154 ~~~~g  158 (176)
T 2r5s_A          154 LSALG  158 (176)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            66444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.41  E-value=1.3e-12  Score=96.91  Aligned_cols=68  Identities=22%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +.++.+|.+++..|++          ++|+..|+++++++|+++.+|+++|.++...|           ++++|+.+|++
T Consensus        18 ~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~   76 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANL----------AEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----------KDGLAIIALNH   76 (121)
T ss_dssp             SCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHH
Confidence            4678999999999998          99999999999999999999999999999999           99999999999


Q ss_pred             HHHhCCCCH
Q 028992          113 AVDEEPTNE  121 (200)
Q Consensus       113 Al~l~P~~~  121 (200)
                      |++++|++.
T Consensus        77 al~l~P~~~   85 (121)
T 1hxi_A           77 ARMLDPKDI   85 (121)
T ss_dssp             HHHHCTTCH
T ss_pred             HHHhCCCCH
Confidence            999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.41  E-value=2.4e-12  Score=113.45  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+++.+++|++.+++++..+|+++.++.++|.++...|++          ++|+..|+++++++|+++.++.++|.++..
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF----------TESEAFFNETKLKFPTLPEVPTFFAEILTD  390 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4566777788888888888888777888888887777777          899999999999999999999999999988


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCC------------------------------H-------HHHHHHHhCC
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTN------------------------------E-------LYQKSLEVST  131 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~------------------------------~-------~y~kAle~~~  131 (200)
                      .|           ++++|+.+|+++++.+|++                              .       .|++++++.|
T Consensus       391 ~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  459 (537)
T 3fp2_A          391 RG-----------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP  459 (537)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred             hC-----------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence            88           9999999999999988754                              1       5667788899


Q ss_pred             CChHHHHHHHHHHHhccc
Q 028992          132 KAPELHMELHKHGINQQT  149 (200)
Q Consensus       132 k~~e~~~~l~~~~~~~~~  149 (200)
                      +.++++..++..+..++-
T Consensus       460 ~~~~~~~~l~~~~~~~g~  477 (537)
T 3fp2_A          460 RSEQAKIGLAQLKLQMEK  477 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhcc
Confidence            999999999998886553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.41  E-value=1.2e-12  Score=115.42  Aligned_cols=99  Identities=21%  Similarity=0.277  Sum_probs=91.1

Q ss_pred             HHHhchHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            8 FDRLLLSEHNRKTAEANYA----------------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~----------------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +-+.+.|++|++.|+++++                .+|.++.++.++|.+++.++++          ++|+..|++||++
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~----------~~A~~~~~~al~~  302 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW----------QGAVDSCLEALEI  302 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHh
Confidence            4567789999999999999                8899999999999999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      +|+++.+++++|.+|..+|           ++++|+.+|++|++++|++...+..+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g-----------~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999           99999999999999999876544433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.41  E-value=2.7e-13  Score=106.91  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=102.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-------------
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-------------   76 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-------------   76 (200)
                      -++.|+++.+.++......+..+..+..+|.+++..+++          ++|+..|+++++++|+++             
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEI----------NEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            355677777777777777778889999999999999998          999999999999999998             


Q ss_pred             ---HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCC
Q 028992           77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK  132 (200)
Q Consensus        77 ---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k  132 (200)
                         .+++++|.+|..+|           ++++|+.+|+++++++|++.                     .|+++++++|+
T Consensus        86 ~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNK-----------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence               89999999999998           99999999999999999986                     78899999999


Q ss_pred             ChHHHHHHHHHHHhcc
Q 028992          133 APELHMELHKHGINQQ  148 (200)
Q Consensus       133 ~~e~~~~l~~~~~~~~  148 (200)
                      .++++..++.....++
T Consensus       155 ~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          155 NLDIRNSYELCVNKLK  170 (198)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999998876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.41  E-value=4.1e-12  Score=107.77  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++|+..|+++++.+|+++.+++++|.++..+|           ++++|+.+|+++++.+|+++
T Consensus       183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-----------RWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            55555555555555555555555555555555           55555555555555555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.40  E-value=7.4e-14  Score=125.85  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=103.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--------------
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--------------   75 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--------------   75 (200)
                      .+..|++|++.++.++..+|+++..+.++|.+++..+++          ++|+..|++|++++|++              
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~----------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  315 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKY----------MQAVIQYGKIVSWLEMEYGLSEKESKASESF  315 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence            345677788888888899999999999999999999998          99999999999999999              


Q ss_pred             -HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC
Q 028992           76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA  133 (200)
Q Consensus        76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~  133 (200)
                       ..+|+++|.+|..+|           +|++|+.+|++|++++|++.                     .|+++++++|+.
T Consensus       316 ~~~~~~nla~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLR-----------EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence             799999999999999           99999999999999999997                     788999999999


Q ss_pred             hHHHHHHHHHHHh
Q 028992          134 PELHMELHKHGIN  146 (200)
Q Consensus       134 ~e~~~~l~~~~~~  146 (200)
                      ++++.+++..+..
T Consensus       385 ~~a~~~l~~~~~~  397 (457)
T 1kt0_A          385 KAARLQISMCQKK  397 (457)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=5.4e-12  Score=89.64  Aligned_cols=92  Identities=26%  Similarity=0.431  Sum_probs=87.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|++.+++++..+|.++.++..+|.++...+++          ++|+..|+++++++|++..+++.+|.++.
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~  114 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPRSAEAWYNLGNAYY  114 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34567899999999999999999999999999999998888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      ..|           ++++|+.+|+++++.+|++
T Consensus       115 ~~~-----------~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          115 KQG-----------DYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTT-----------CHHHHHHHHHHHHHHSTTC
T ss_pred             HHc-----------cHHHHHHHHHHHHccCCCC
Confidence            988           9999999999999999974

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.40  E-value=6.6e-12  Score=112.57  Aligned_cols=117  Identities=13%  Similarity=0.022  Sum_probs=80.9

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      .+.+++|++.++++++.+|+++.+++.+|.++...|++          ++|+..|+++++++|+++.++.++|.+|...|
T Consensus       420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI----------LLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            34444444444444444444444444444444444444          88888888888888888888888888888877


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHh------CCCC-H---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDE------EPTN-E---------------------LYQKSLEVSTKAPELHMELHK  142 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l------~P~~-~---------------------~y~kAle~~~k~~e~~~~l~~  142 (200)
                                 ++++|+++|+++++.      +|++ .                     .|++++++.|+.+..+..++.
T Consensus       490 -----------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  558 (597)
T 2xpi_A          490 -----------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL  558 (597)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence                       888888888888888      6663 2                     677788888888888888888


Q ss_pred             HHHhcc
Q 028992          143 HGINQQ  148 (200)
Q Consensus       143 ~~~~~~  148 (200)
                      .+..++
T Consensus       559 ~~~~~g  564 (597)
T 2xpi_A          559 VYLHKK  564 (597)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            877554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.40  E-value=2.3e-12  Score=109.29  Aligned_cols=95  Identities=13%  Similarity=0.021  Sum_probs=88.2

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      +.+++|++.++++++.+|+++.+++++|.++..+|++          ++|+..|++|++++|+++++++++|.++...| 
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g-  248 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW----------EAAEGVLQEALDKDSGHPETLINLVVLSQHLG-  248 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence            6899999999999999999999999999999999999          99999999999999999999999999999998 


Q ss_pred             ccCChHHhhcCHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 028992           92 LTADLSEAKGDFDK-ASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        92 l~~~~~~a~~~~d~-A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                                ++++ +..+++++++++|+++......
T Consensus       249 ----------~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          249 ----------KPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             ----------CCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ----------CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence                      8866 6799999999999999555433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=5e-12  Score=92.77  Aligned_cols=99  Identities=16%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             hhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcccCChHHhhcC
Q 028992           26 AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGD  102 (200)
Q Consensus        26 ~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---~~a~~~LG~a~~~~G~l~~~~~~a~~~  102 (200)
                      ..+|.++..+..+|.++...+++          ++|+..|+++++++|++   ..+++++|.+|...|           +
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~   80 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDY----------GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-----------D   80 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-----------C
T ss_pred             ccchHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-----------c
Confidence            45789999999999999999998          99999999999999998   899999999999998           9


Q ss_pred             HHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          103 FDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       103 ~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      +++|+.+|+++++++|++.                     .|+++++++|+.+.++..+.+...
T Consensus        81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999999999986                     778888888888888887776644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=6.8e-12  Score=87.96  Aligned_cols=92  Identities=25%  Similarity=0.393  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      .++.++.+|.++...+++          ++|+..|++++.++|+++.+++++|.++...|           ++++|+.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~   61 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNI----------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-----------DYQKAYEDG   61 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-----------cHHHHHHHH
Confidence            467899999999999998          99999999999999999999999999999988           999999999


Q ss_pred             HHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992          111 QRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus       111 qkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      +++++.+|++.                     .|+++++++|..+.++..++..
T Consensus        62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999875                     5566666666666666666543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.39  E-value=2.1e-12  Score=117.32  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+.+.|++|++.++++++++|+++.+++++|.++..++++          ++|+..|++|++++|+++.+++++|.+|..
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999998          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +|           ++++|+++|++|++++|++.
T Consensus        87 ~g-----------~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           87 LG-----------KFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HT-----------CHHHHHHHHHHHHHHSTTCT
T ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCH
Confidence            88           99999999999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.7e-12  Score=113.28  Aligned_cols=120  Identities=14%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|++.++++++.+|+ +.++..+|.++...|++          ++|+..|+++++++|+++.++..+|.+|.
T Consensus       247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  315 (514)
T 2gw1_A          247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDS----------TEYYNYFDKALKLDSNNSSVYYHRGQMNF  315 (514)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCC----------TTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence            34677899999999999999999 99999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      ..|           ++++|+.+|+++++.+|++.                     .|+++++..|..++++..++..+..
T Consensus       316 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  384 (514)
T 2gw1_A          316 ILQ-----------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD  384 (514)
T ss_dssp             HTT-----------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             HhC-----------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            988           99999999999999999875                     7888889999999999999998886


Q ss_pred             ccc
Q 028992          147 QQT  149 (200)
Q Consensus       147 ~~~  149 (200)
                      ++-
T Consensus       385 ~~~  387 (514)
T 2gw1_A          385 KND  387 (514)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.37  E-value=3e-12  Score=107.85  Aligned_cols=120  Identities=11%  Similarity=0.020  Sum_probs=109.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.+++|+..++++++.+|+++++++.+|.++...|++          ++|+..|++++.++|+....+..++..+.
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----------~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----------EDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----------HHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----------HHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999          99999999999999987777777787788


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCC--hHHHHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKA--PELHMELHKHG  144 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~--~e~~~~l~~~~  144 (200)
                      ..+           ++++|+..|+++++.+|++.                     .|+++++.+|+.  ++++.+++..+
T Consensus       197 ~~~-----------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          197 XQA-----------ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHH-----------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             hhc-----------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence            877           89999999999999999997                     788899999998  89999999988


Q ss_pred             Hhcc
Q 028992          145 INQQ  148 (200)
Q Consensus       145 ~~~~  148 (200)
                      ..++
T Consensus       266 ~~~g  269 (287)
T 3qou_A          266 AALG  269 (287)
T ss_dssp             HHHC
T ss_pred             HHcC
Confidence            7554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=4.9e-12  Score=106.70  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-------cCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-------SQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGN   84 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-------~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~   84 (200)
                      .+++|+..+++++..+|+++++|+++|..+...       |++.   ...+.+++|+..|++|++ ++|++..+|.++|.
T Consensus        31 ~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~  107 (308)
T 2ond_A           31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN---NAKLFSDEAANIYERAISTLLKKNMLLYFAYAD  107 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH---HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh---hcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            348999999999999999999999999998754       4420   112234899999999999 79999999999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHK  142 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~  142 (200)
                      ++..+|           ++++|..+|+++++++|++.                      .|+++++..|....+|...+.
T Consensus       108 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  176 (308)
T 2ond_A          108 YEESRM-----------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             HHHhcC-----------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999998           99999999999999999863                      778888888888888876655


Q ss_pred             HH
Q 028992          143 HG  144 (200)
Q Consensus       143 ~~  144 (200)
                      ..
T Consensus       177 ~~  178 (308)
T 2ond_A          177 ME  178 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.37  E-value=7.1e-12  Score=85.43  Aligned_cols=83  Identities=30%  Similarity=0.490  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      |.++..++.+|.++...+++          ++|+..|+++++++|+++.+++++|.++...|           ++++|+.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~   64 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-----------DYDEAIE   64 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----------hHHHHHH
Confidence            35788999999999999998          99999999999999999999999999999988           9999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992          109 CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       109 ~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      +|+++++++|++             ++++.+++..+.
T Consensus        65 ~~~~a~~~~p~~-------------~~~~~~l~~~~~   88 (91)
T 1na3_A           65 YYQKALELDPNN-------------AEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHCTTC-------------HHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCC-------------HHHHHHHHHHHH
Confidence            999999998866             455566665554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=1.6e-11  Score=100.29  Aligned_cols=92  Identities=10%  Similarity=0.038  Sum_probs=83.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------hcCCcccccccccHHHHHHHHHHHHHhCCCCH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLE--------LSQFESVSDSKKIINEAISKFEEALVIDPAKH   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d---~~~l~~lG~al~~--------l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~   76 (200)
                      +-+++.|++|++.++++++.+|++   +++++++|.++..        ++++          ++|+..|+++++++|+++
T Consensus        62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT----------RKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH----------HHHHHHHHHHHHHCTTCT
T ss_pred             HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH----------HHHHHHHHHHHHHCcCch
Confidence            457789999999999999998854   7789999999999        6666          999999999999999997


Q ss_pred             HHH-----------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           77 YTL-----------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        77 ~a~-----------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      .+.                 +.+|.+|...|           ++++|+.+|+++++..|++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRE-----------LYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCCCC
Confidence            776                 88999999999           9999999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.34  E-value=7.9e-13  Score=102.74  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      ||...+.++.+|.++...|++          ++|+..|+++++++|+++.+++++|.+|...|           ++++|+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-----------~~~~A~   60 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEH----------AQALNVIQTLSDELQSRGDVKLAKADCLLETK-----------QFELAQ   60 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCH----------HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-----------CHHHHH
Confidence            566777899999999999998          99999999999999999999999999999999           999999


Q ss_pred             HHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992          108 ECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       108 ~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                      .+|++++..+| +.                      .|+++++++|+.++++++++..+..++.
T Consensus        61 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~  123 (176)
T 2r5s_A           61 ELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR  123 (176)
T ss_dssp             HHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            99999999998 54                      6677889999999999999999986654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.33  E-value=6.7e-12  Score=100.21  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhcCcccCChHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-------KHY-----TLWSLGNAHTSCGFLTADLSE   98 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-------~~~-----a~~~LG~a~~~~G~l~~~~~~   98 (200)
                      .++.+.+.|.+++..|+|          ++|+.+|++||+++|+       ++.     +|.|+|.++..+|        
T Consensus        10 ~a~~~~~~G~~l~~~g~~----------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--------   71 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEY----------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------   71 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------
Confidence            367789999999999999          9999999999999999       655     9999999999999        


Q ss_pred             hhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHH----HHHHHHHHhc
Q 028992           99 AKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELH----MELHKHGINQ  147 (200)
Q Consensus        99 a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~----~~l~~~~~~~  147 (200)
                         +|++|+.+|.+||++      |.++++++|+.+.+|    ++.|..+...
T Consensus        72 ---r~~eAl~~~~kAL~l------~n~~~e~~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           72 ---SFDEALHSADKALHY------FNRRGELNQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             ---CHHHHHHHHHHHHHH------HHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHHHHh------hhccccCCCchHHHHHHHHHhHHHHHHHC
Confidence               999999999999998      556666666666666    6666666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.32  E-value=8.5e-12  Score=95.21  Aligned_cols=94  Identities=21%  Similarity=0.243  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCcc
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------------------DPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------------------dP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .++.+...|..++..|++          ++|+..|++|+++                  +|.+..+|.++|.+|..+|  
T Consensus        10 ~a~~~~~~G~~~~~~~~~----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--   77 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDY----------KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG--   77 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            467889999999999998          9999999999999                  8888899999999999998  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCCh-HHHHHHHHHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAP-ELHMELHKHGI  145 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~-e~~~~l~~~~~  145 (200)
                               +|++|+.+|++|++++|++.                     .|+++++++|+.+ .+...|.....
T Consensus        78 ---------~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           78 ---------DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             ---------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             ---------cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                     99999999999999999997                     8889999999998 66766665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.32  E-value=8.5e-12  Score=108.88  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +++.+++|++.++++++.+|+++.++.++|.++...|++          ++|+..|+++++++|+++.+++++|.++...
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  385 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF----------DDCETLFSEAKRKFPEAPEVPNFFAEILTDK  385 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence            345566666666666666666666666666666665555          8888888888888888888888888888887


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------------HHHHHHHhCCCChHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------------~y~kAle~~~k~~e~~~~  139 (200)
                      |           ++++|+.+|+++++.+|++.                              .|++++++.|+.+..+..
T Consensus       386 ~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          386 N-----------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             T-----------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             C-----------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            7           88888888888888776651                              455666777788888888


Q ss_pred             HHHHHHhcc
Q 028992          140 LHKHGINQQ  148 (200)
Q Consensus       140 l~~~~~~~~  148 (200)
                      ++..+..++
T Consensus       455 la~~~~~~g  463 (514)
T 2gw1_A          455 LAQMKLQQE  463 (514)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            887776544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.31  E-value=1.1e-11  Score=86.35  Aligned_cols=89  Identities=13%  Similarity=0.192  Sum_probs=77.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      ++|++++++..+|.++...+++          ++|+..|+++++++|++..+++++|.++...|           ++++|
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A   59 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNY----------TESIDLFEKAIQLDPEESKYWLMKGKALYNLE-----------RYEEA   59 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------CHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-----------CHHHH
Confidence            4799999999999999998888          99999999999999999999999999999998           99999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992          107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      +.+|+++++.+|+           ...++.+.+++..+..+
T Consensus        60 ~~~~~~a~~~~~~-----------~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           60 VDCYNYVINVIED-----------EYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHHHHTSCC-----------TTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCcc-----------cchHHHHHHHHHHHHHH
Confidence            9999999999887           01345556666655544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=6.6e-12  Score=105.52  Aligned_cols=120  Identities=12%  Similarity=0.091  Sum_probs=100.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------   75 (200)
                      +..++.|++|++.+++++++.+.      .+.++.++|.++..+|++          ++|+.+|++|+++.|+.      
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~~~~g~~~~~  116 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS----------VNAVDSLENAIQIFTHRGQFRRG  116 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence            44577899999999999988532      267999999999999998          99999999999998865      


Q ss_pred             HHHHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHH
Q 028992           76 HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSL  127 (200)
Q Consensus        76 ~~a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAl  127 (200)
                      ..++.++|.+|... |           ++++|+.+|++|+++.|++.                           .|++++
T Consensus       117 a~~~~~lg~~~~~~lg-----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  185 (292)
T 1qqe_A          117 ANFKFELGEILENDLH-----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (292)
T ss_dssp             HHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            56889999999995 9           99999999999999988541                           677888


Q ss_pred             HhCCCChH-------HHHHHHHHHHhcc
Q 028992          128 EVSTKAPE-------LHMELHKHGINQQ  148 (200)
Q Consensus       128 e~~~k~~e-------~~~~l~~~~~~~~  148 (200)
                      ++.|+.+.       .+.+++..+..++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g  213 (292)
T 1qqe_A          186 KSSMGNRLSQWSLKDYFLKKGLCQLAAT  213 (292)
T ss_dssp             HTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence            88877654       5677777776544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.1e-11  Score=87.35  Aligned_cols=90  Identities=14%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      +++.+.++|.++...|++          ++|+..|+++++++|+++.+++++|.+|..+|           ++++|+.+|
T Consensus         3 ~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~   61 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLY----------REAVHCYDQLITAQPQNPVGYSNKAMALIKLG-----------EYTQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-----------CHHHHHHHH
Confidence            578899999999999998          99999999999999999999999999999999           999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          111 QRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       111 qkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      +++++++|++.....       .+.++..++..+...+
T Consensus        62 ~~al~~~p~~~~~~~-------~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           62 QQGLRYTSTAEHVAI-------RSKLQYRLELAQGAVG   92 (111)
T ss_dssp             HHHHTSCSSTTSHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccHHHH-------HHHHHHHHHHHHHHHH
Confidence            999999998721111       1456677777666544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.29  E-value=9.2e-11  Score=87.52  Aligned_cols=92  Identities=14%  Similarity=0.196  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      .++.+..+|.++...+++          ++|+..|+++++++|+++.+++++|.++...|           ++++|+.+|
T Consensus        12 ~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~   70 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDY----------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDA   70 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence            367889999999999998          99999999999999999999999999999988           999999999


Q ss_pred             HHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992          111 QRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus       111 qkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      +++++++|++.                     .|+++++++|+.+..+..++..
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999986                     7777888888888877555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=4e-12  Score=106.85  Aligned_cols=94  Identities=13%  Similarity=0.053  Sum_probs=80.6

Q ss_pred             HHH-hchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---
Q 028992            8 FDR-LLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---   77 (200)
Q Consensus         8 ~~~-l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---   77 (200)
                      +.+ ++.+++|++.+++++++.|.+      +.++.++|.++..+|++          ++|+..|+++++++|++..   
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY----------IEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcCCcccH
Confidence            345 489999999999999999875      67899999999999998          9999999999999998764   


Q ss_pred             ----HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           78 ----TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        78 ----a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                          ++.++|.+|..+|           ++++|+.+|+++++++|++..
T Consensus       197 ~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAAT-----------DAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             GHHHHHHHHHHHHHHTT-----------CHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCCC
Confidence                6789999999999           999999999999999998763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=2e-12  Score=91.20  Aligned_cols=84  Identities=13%  Similarity=0.136  Sum_probs=76.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYTLWS   81 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~a~~~   81 (200)
                      +-+.+.|++|++.++++++++|+++.+++++|.++..+|++          ++|+..|+++++++|++      ..+++.
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A           14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY----------TQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999          99999999999999999      999999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +|.++..+|           ++++|+..|++
T Consensus        84 ~~~~~~~~~-----------~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVG-----------SVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHH-----------CCCCCSSSSSS
T ss_pred             HHHHHHHHH-----------hHhhhHhHHHH
Confidence            999999988           66666655544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.25  E-value=3.9e-11  Score=86.77  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      +|+|++.+..+|.++...++.       .+.++|...|++||++||+++.+++.+|++++..|           +|++|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~-------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g-----------~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQ-------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF-----------RFQEAI   63 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTT-------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC-----------CHHHHH
Confidence            799999999999999876552       12299999999999999999999999999999999           999999


Q ss_pred             HHHHHHHHhCCCC
Q 028992          108 ECFQRAVDEEPTN  120 (200)
Q Consensus       108 ~~fqkAl~l~P~~  120 (200)
                      .+|+++++.+|.+
T Consensus        64 ~~w~~~l~~~p~~   76 (93)
T 3bee_A           64 DTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHTCCCTT
T ss_pred             HHHHHHHhhCCCC
Confidence            9999999999984

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.25  E-value=9.3e-12  Score=87.12  Aligned_cols=84  Identities=12%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDAD-NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~-~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +-+.+.|++|++.++++++.+|+++. +++++|.++..++++          ++|+..|+++++++|+++.++.+     
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~-----   74 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW----------QKALNNYQSAIELNPDSPALQAR-----   74 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHHHHH-----
Confidence            45667888888888888888888888 888888888888887          88888888888888888887644     


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                         +           .+.+|+.+|++++..+|++
T Consensus        75 ---~-----------~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 ---K-----------MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             ---H-----------HHHHHHHHHCCTTHHHHCC
T ss_pred             ---H-----------HHHHHHHHHHHHhccCccc
Confidence               3           6777888888888887765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.24  E-value=5.5e-11  Score=84.71  Aligned_cols=71  Identities=18%  Similarity=0.289  Sum_probs=66.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      |..++.++.+|.++...+++          ++|+..|+++++++|+++.+++++|.+|...|           ++++|+.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~   59 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDF----------DTALKHYDKAKELDPTNMTYITNQAAVYFEKG-----------DYNKCRE   59 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-----------cHHHHHH
Confidence            34578899999999999998          99999999999999999999999999999988           9999999


Q ss_pred             HHHHHHHhCCCC
Q 028992          109 CFQRAVDEEPTN  120 (200)
Q Consensus       109 ~fqkAl~l~P~~  120 (200)
                      +|+++++.+|++
T Consensus        60 ~~~~~~~~~~~~   71 (131)
T 1elr_A           60 LCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHhhcccc
Confidence            999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.23  E-value=9.7e-11  Score=84.67  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~---~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~  109 (200)
                      +.++.+|.++...|++          ++|+..|+++++.+|+++   .+++.+|.+|...|           ++++|+.+
T Consensus         3 ~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~   61 (129)
T 2xev_A            3 RTAYNVAFDALKNGKY----------DDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-----------NFQLAEAQ   61 (129)
T ss_dssp             CCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-----------cHHHHHHH
Confidence            4578999999999998          999999999999999999   89999999999999           99999999


Q ss_pred             HHHHHHhCCCC
Q 028992          110 FQRAVDEEPTN  120 (200)
Q Consensus       110 fqkAl~l~P~~  120 (200)
                      |+++++.+|++
T Consensus        62 ~~~~~~~~p~~   72 (129)
T 2xev_A           62 FRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHCTTS
T ss_pred             HHHHHHHCCCC
Confidence            99999999998

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=6.3e-11  Score=95.53  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=85.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCC--------cccccccccHHHHHHHHHHHHHhCCCCH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQF--------ESVSDSKKIINEAISKFEEALVIDPAKH   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~---~l~~lG~al~~l~~~--------~~~~~~~~~~~eAi~~le~AL~ldP~~~   76 (200)
                      +.+++.|++|++.++++++.+|+++.   +++++|.++..++..        .......+.+++|+..|+++++.+|+++
T Consensus        51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            45678999999999999999999875   899999999875421        0011123566999999999999999998


Q ss_pred             HHH-----------------HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           77 YTL-----------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        77 ~a~-----------------~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      .+.                 +.+|.+|...|           ++++|+.+|+++++..|+++.
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~  182 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERG-----------AWVAVVNRVEGMLRDYPDTQA  182 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHCcCCCc
Confidence            665                 67888899988           999999999999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.21  E-value=2e-10  Score=82.36  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      ..|.++..+..+|.++...+++          ++|+..|+++++++|++..+++++|.+|...|           ++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-----------~~~~A   69 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDY----------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-----------EFQLA   69 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-----------CHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-----------cHHHH
Confidence            3578899999999999999999          99999999999999999999999999999988           99999


Q ss_pred             HHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          107 SECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      +.+|+++++.+|++.                     .|+++++++|..++++..++..+.
T Consensus        70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999875                     455555555555566655555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.20  E-value=2.8e-11  Score=96.72  Aligned_cols=116  Identities=22%  Similarity=0.285  Sum_probs=95.4

Q ss_pred             chHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 028992           12 LLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------DPAKHYTLWSL   82 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------dP~~~~a~~~L   82 (200)
                      ..|++|++.+++.+..+ |..+.++..+|.++...|++          ++|+..|++++++        +|....++.++
T Consensus        22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----------KEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45666666666665444 78899999999999999998          9999999999988        57778899999


Q ss_pred             HHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh--------CCCCH---------------------HHHHHHHh----
Q 028992           83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--------EPTNE---------------------LYQKSLEV----  129 (200)
Q Consensus        83 G~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l--------~P~~~---------------------~y~kAle~----  129 (200)
                      |.+|...|           ++++|+.+|++++++        +|...                     .|++++++    
T Consensus        92 ~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           92 AVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-----------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            99999999           999999999999998        34332                     77788887    


Q ss_pred             ----CCCChHHHHHHHHHHHhcc
Q 028992          130 ----STKAPELHMELHKHGINQQ  148 (200)
Q Consensus       130 ----~~k~~e~~~~l~~~~~~~~  148 (200)
                          .|....++.+++..+..++
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcC
Confidence                6666788889998876554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.20  E-value=1.4e-10  Score=78.94  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.|++|++.++++++.+|+++.+++++|.++...+++          ++|+..|+++++++|+++.++.++|.++.
T Consensus        19 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------DEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998          99999999999999999999999999998


Q ss_pred             hcC
Q 028992           88 SCG   90 (200)
Q Consensus        88 ~~G   90 (200)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=4.3e-11  Score=95.64  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992            8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------   71 (200)
                      +-.++.|++|++.++++++.        +|..+.++.++|.++..+|++          ++|+..|++++++        
T Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY----------KEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHcCCC
Confidence            34677899999999999987        577888999999999999998          9999999999999        


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      +|....++.++|.+|...|           ++++|+.+|++++++
T Consensus       123 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  156 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQG-----------KAEEVEYYYRRALEI  156 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            6888899999999999999           999999999999999

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.17  E-value=2.7e-10  Score=79.56  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        35 l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      .++.|.++...+++          ++|+..|+++++++|+++. +++++|.+|..+|           ++++|+.+|+++
T Consensus         3 ~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~a   61 (99)
T 2kc7_A            3 QLKTIKELINQGDI----------ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-----------DWQKALNNYQSA   61 (99)
T ss_dssp             THHHHHHHHHHTCH----------HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHH
Confidence            35789999999888          9999999999999999999 9999999999988           999999999999


Q ss_pred             HHhCCCCHH
Q 028992          114 VDEEPTNEL  122 (200)
Q Consensus       114 l~l~P~~~~  122 (200)
                      ++++|++..
T Consensus        62 l~~~p~~~~   70 (99)
T 2kc7_A           62 IELNPDSPA   70 (99)
T ss_dssp             HHHCTTSTH
T ss_pred             HhcCCCcHH
Confidence            999999863

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.17  E-value=1.6e-10  Score=104.23  Aligned_cols=113  Identities=9%  Similarity=0.071  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCcc
Q 028992           15 EHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGFL   92 (200)
Q Consensus        15 e~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-~a~~~LG~a~~~~G~l   92 (200)
                      ++|++.++++++ .+|+++.+|..+|..+...|++          ++|+..|+++++++|+++ .+|.++|.++..+|  
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--  370 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--  370 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhc--
Confidence            389999999997 8999999999999999998888          999999999999999996 68999999999888  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                               ++++|..+|++|++..|.+.                      .|+++++..|+.++++.+++..+..++
T Consensus       371 ---------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          371 ---------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             ---------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred             ---------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence                     99999999999999877642                      677888999999999999998876544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.17  E-value=7e-11  Score=94.22  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           54 SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        54 ~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..+++++|+.++++|++++|+++++|.++|.++..+|.+.+. .++++.+++|+.+|++||+++|++.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g-~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI-SDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh-hhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            345679999999999999999999999999999998733222 2245567899999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.16  E-value=6.6e-11  Score=99.47  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE  108 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~  108 (200)
                      |.+++.+..+|.++...|++          ++|+..|++|++++|+++.+++++|.+|..+|           ++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~   59 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALA   59 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHH
Confidence            77899999999999999998          99999999999999999999999999999999           9999999


Q ss_pred             HHHHHHHhCCCCH
Q 028992          109 CFQRAVDEEPTNE  121 (200)
Q Consensus       109 ~fqkAl~l~P~~~  121 (200)
                      +|++|++++|++.
T Consensus        60 ~~~~al~~~p~~~   72 (281)
T 2c2l_A           60 DCRRALELDGQSV   72 (281)
T ss_dssp             HHHHHTTSCTTCH
T ss_pred             HHHHHHHhCCCCH
Confidence            9999999999986

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.14  E-value=1.9e-10  Score=93.53  Aligned_cols=120  Identities=19%  Similarity=0.223  Sum_probs=102.5

Q ss_pred             HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992            8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------   71 (200)
                      +-+.+.+++|++.+++++++        +|..+.++..+|.++...|++          ++|+..|++++++        
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----------KDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence            45677899999999999995        788899999999999999998          9999999999988        


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC-----CCCH------------------------H
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE-----PTNE------------------------L  122 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~-----P~~~------------------------~  122 (200)
                      +|....+++++|.+|...|           ++++|+.+|++++++.     +++.                        .
T Consensus       107 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  175 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY  175 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5777889999999999998           9999999999999984     3332                        6


Q ss_pred             HHHHHHh--------CCCChHHHHHHHHHHHhcc
Q 028992          123 YQKSLEV--------STKAPELHMELHKHGINQQ  148 (200)
Q Consensus       123 y~kAle~--------~~k~~e~~~~l~~~~~~~~  148 (200)
                      |++++++        .+..+.++.+++..+..++
T Consensus       176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  209 (311)
T 3nf1_A          176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG  209 (311)
T ss_dssp             HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            7777777        5666778888888776554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.13  E-value=2e-10  Score=91.13  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcC
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-P-AKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P-~~~~a~~~LG~a~~~~G   90 (200)
                      ....+++.|++.+..+|.+.++.+++|.+|....+       ..+++++|..|++.++.+ | ++.+++|+||.+|+..|
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence            45677888888899999999999999999998553       245589999999999999 8 67899999999999999


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS  126 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA  126 (200)
                                 +|++|.+|++++++.+|+|..-+..
T Consensus        86 -----------~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           86 -----------EYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             -----------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence                       9999999999999999999754433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=1.9e-09  Score=87.98  Aligned_cols=83  Identities=17%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+.+.+++|++.++++++  |+++.+++++|.++..    .+++          ++|+..|++|++++  ++.++++||.
T Consensus        17 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~--~~~a~~~lg~   82 (273)
T 1ouv_A           17 YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL----------KKAASFYAKACDLN--YSNGCHLLGN   82 (273)
T ss_dssp             HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH----------HHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            345567777777777776  6677777777777776    5555          66666666666664  5666666666


Q ss_pred             HHHh----cCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           85 AHTS----CGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        85 a~~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      +|..    .+           ++++|+.+|++|++.
T Consensus        83 ~~~~g~~~~~-----------~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           83 LYYSGQGVSQ-----------NTNKALQYYSKACDL  107 (273)
T ss_dssp             HHHHTSSSCC-----------CHHHHHHHHHHHHHT
T ss_pred             HHhCCCCccc-----------CHHHHHHHHHHHHHc
Confidence            6665    55           555566655555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=4e-11  Score=97.58  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=82.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--------
Q 028992            8 FDRLLLSEHNRKTAEANYAKD--------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--------   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~--------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--------   71 (200)
                      +.+++.+++|++.+++++++.        |....++.++|.++...+++          ++|+..|++++++        
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY----------EEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence            345778999999999999874        77788999999999999988          9999999999999        


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      +|....+++++|.+|...|           ++++|+.+|+++++..|.
T Consensus       191 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLKQG-----------KFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHH
Confidence            8888899999999999988           999999999999987554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.10  E-value=2.5e-09  Score=87.28  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+.+++|++.++++++.+  ++++++++|.++..    .+++          ++|+..|++|++++  ++.++++||.+|
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~----------~~A~~~~~~a~~~~--~~~a~~~lg~~~  120 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT----------NKALQYYSKACDLK--YAEGCASLGGIY  120 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH----------HHHHHHHHHHHHcC--CccHHHHHHHHH
Confidence            677888999999888875  78889999998887    6665          88888888888874  788888888888


Q ss_pred             Hh----cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHH
Q 028992           87 TS----CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        87 ~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~  139 (200)
                      ..    .+           ++++|+.+|++|++.++...                       .|+++++.  ..+..+.+
T Consensus       121 ~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  187 (273)
T 1ouv_A          121 HDGKVVTR-----------DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFN  187 (273)
T ss_dssp             HHCSSSCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HcCCCccc-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            87    77           88888888888888764332                       45555555  45777888


Q ss_pred             HHHHHHh
Q 028992          140 LHKHGIN  146 (200)
Q Consensus       140 l~~~~~~  146 (200)
                      ++..+..
T Consensus       188 lg~~~~~  194 (273)
T 1ouv_A          188 AGNMYHH  194 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            8877765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.09  E-value=6.6e-10  Score=100.15  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------hcCCcccccccccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLE-------LSQFESVSDSKKIINEAISKFEEALV-IDPAKHYTLWSLGNAH   86 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~-------l~~~~~~~~~~~~~~eAi~~le~AL~-ldP~~~~a~~~LG~a~   86 (200)
                      +.++..+++++..+|+++++|+++|..+..       .|++..+   ....++|+..|++|++ ++|+++.+|..+|.++
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a---~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~  331 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA---KLFSDEAANIYERAISTLLKKNMLLYFAYADYE  331 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh---hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            467789999999999999999999999986       5666000   0001299999999997 8999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      ...|           ++++|..+|+++++.+|++.                      .|++|++..|..+..+...+..
T Consensus       332 ~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          332 ESRM-----------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             HhcC-----------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            9988           99999999999999999873                      5667777777766666554433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.09  E-value=1.5e-10  Score=99.52  Aligned_cols=120  Identities=10%  Similarity=0.020  Sum_probs=100.1

Q ss_pred             HHhchHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------
Q 028992            9 DRLLLSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------   75 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------   75 (200)
                      -+.+.|++|++.+++++.+      ++..+.+++++|.++..+|++          ++|+..+++|+++.++.       
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~  183 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT----------YFSMDYARQAYEIYKEHEAYNIRL  183 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhCccchHHH
Confidence            4567899999999999987      334678999999999999998          99999999999995544       


Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHH
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLE  128 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle  128 (200)
                      ..++.++|.+|..+|           ++++|+.+|++|+++.|...                           .|+++++
T Consensus       184 ~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          184 LQCHSLFATNFLDLK-----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            458999999999999           99999999999998855321                           6778887


Q ss_pred             -----hC-CCChHHHHHHHHHHHhccc
Q 028992          129 -----VS-TKAPELHMELHKHGINQQT  149 (200)
Q Consensus       129 -----~~-~k~~e~~~~l~~~~~~~~~  149 (200)
                           .+ |..+.++.+++..+..++.
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~  279 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGK  279 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCC
Confidence                 34 6677889999998876553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.08  E-value=5.2e-10  Score=98.53  Aligned_cols=96  Identities=19%  Similarity=0.364  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhcCcccCC
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV----------------IDPAKHYTLWSLGNAHTSCGFLTAD   95 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~----------------ldP~~~~a~~~LG~a~~~~G~l~~~   95 (200)
                      +..+..+|.+++..+++          ++|+.+|++|++                ++|.+..+|.++|.+|..+|     
T Consensus       223 a~~~~~~g~~~~~~g~~----------~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-----  287 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNW----------EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-----  287 (370)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            56688999999999998          999999999999                89999999999999999999     


Q ss_pred             hHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           96 LSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        96 ~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                            ++++|+.+|++|++++|++.                     .|+++++++|+.++++..++.....++
T Consensus       288 ------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          288 ------DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             ------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                  99999999999999999987                     788999999999999999988776443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=1.7e-09  Score=100.72  Aligned_cols=126  Identities=13%  Similarity=0.024  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      +-++|++.+++++..||++.++|+..+.++..+++..........+++++..++++++++|++..+|+..|.++..+|  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~--  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--
Confidence            446889999999999999999999999999998872111111223599999999999999999999999999999977  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                             ..++++|++++.+++++||.|.                      .+.++++.+|....+|...+..+...
T Consensus       122 -------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          122 -------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             -------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             -------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence                   3356999999999999999996                      34667788999999999999887653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.07  E-value=9.4e-11  Score=85.19  Aligned_cols=71  Identities=17%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH------------
Q 028992           57 IINEAISKFEEALVI---DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------  121 (200)
Q Consensus        57 ~~~eAi~~le~AL~l---dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~------------  121 (200)
                      .+++|+..|++|+++   +|+++.++++||.+|..+|           ++++|+.+|+++++++|++.            
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-----------EYRKAEAVLANGVKQFPNHQALRVFYAMVLYN   73 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            349999999999999   6999999999999999999           99999999999999999986            


Q ss_pred             ---------HHHHHHHhCCCChHHHH
Q 028992          122 ---------LYQKSLEVSTKAPELHM  138 (200)
Q Consensus       122 ---------~y~kAle~~~k~~e~~~  138 (200)
                               .|+++++..|+.+++..
T Consensus        74 ~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence                     56666666666666543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.06  E-value=1.5e-09  Score=94.24  Aligned_cols=117  Identities=10%  Similarity=-0.018  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELS--QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH----   86 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~--~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~----   86 (200)
                      +-++|++.+++++.+||++.++|+..|.++..++  ++          ++++..++++|.++|++..+|...+.++    
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~----------~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNL----------YDELDWCEEIALDNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCH----------HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccH----------HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999887  55          9999999999999999999999999999    


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      ...+        ..+++++++.++.++++.+|.|.                       .+.++++.+|+.-.++...+..
T Consensus       118 ~~l~--------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l  189 (306)
T 3dra_A          118 ELNN--------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL  189 (306)
T ss_dssp             HHTT--------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             Hhcc--------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5551        01388999999999999999886                       4667777888888888877776


Q ss_pred             HHhc
Q 028992          144 GINQ  147 (200)
Q Consensus       144 ~~~~  147 (200)
                      +...
T Consensus       190 l~~l  193 (306)
T 3dra_A          190 LFSK  193 (306)
T ss_dssp             HHSS
T ss_pred             HHhc
Confidence            6544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.05  E-value=5.5e-10  Score=95.41  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKHY   77 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~----~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~~   77 (200)
                      +-+.+.|++|++.++++++++|+++    .++..+|.++..+|++          ++|+..|++++++      +|....
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY----------NKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHccCchHHHH
Confidence            4566799999999999999999998    5899999999999998          9999999999999      788889


Q ss_pred             HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      +++++|.+|...|           ++++|+.+|++++++
T Consensus       128 ~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          128 SSGNLGNTLKVMG-----------RFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence            9999999999998           999999999999988

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.05  E-value=4.8e-09  Score=91.12  Aligned_cols=121  Identities=10%  Similarity=-0.049  Sum_probs=103.5

Q ss_pred             HHhc--hHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992            9 DRLL--LSEHNRKTAEANYAKDPLDADNLTRWGEAL----LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSL   82 (200)
Q Consensus         9 ~~l~--~fe~A~~~~e~a~~~~P~d~~~l~~lG~al----~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~L   82 (200)
                      ..++  .++++++.++.++..||.+.++|+..+.++    ..++.       .+.+++++..+++++++||++..+|...
T Consensus        78 ~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-------~~~~~~EL~~~~~~l~~~pkny~aW~~R  150 (306)
T 3dra_A           78 KNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-------DFDPYREFDILEAMLSSDPKNHHVWSYR  150 (306)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-------CCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3455  899999999999999999999999999999    55411       0223999999999999999999999999


Q ss_pred             HHHHHhcCcccCChHHhhcCHH--HHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCC
Q 028992           83 GNAHTSCGFLTADLSEAKGDFD--KASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKA  133 (200)
Q Consensus        83 G~a~~~~G~l~~~~~~a~~~~d--~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~  133 (200)
                      |.++..+|           .++  +++++++++++.||.|.                           .+.++++.+|..
T Consensus       151 ~~vl~~l~-----------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          151 KWLVDTFD-----------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             HHHHHHTT-----------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHhc-----------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence            99999988           777  99999999999999996                           345667889999


Q ss_pred             hHHHHHHHHHHHhc
Q 028992          134 PELHMELHKHGINQ  147 (200)
Q Consensus       134 ~e~~~~l~~~~~~~  147 (200)
                      ..++..++..+...
T Consensus       220 ~SaW~y~~~ll~~~  233 (306)
T 3dra_A          220 PSTWNYLLGIHERF  233 (306)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHhc
Confidence            99998888776543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.04  E-value=1.5e-09  Score=87.20  Aligned_cols=116  Identities=12%  Similarity=0.002  Sum_probs=89.8

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+.+.+++|++.++++.+.  +++++++++|.++.. +.      ....+++|+..|++|+  ++.++.++++||.+|..
T Consensus        29 ~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g------~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           29 VSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP------QQADYPQARQLAEKAV--EAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST------TSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTC
T ss_pred             hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC------CCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHc
Confidence            3457889999999998764  689999999999876 41      1224499999999994  56899999999999876


Q ss_pred             ----cCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH-------------------------HHHHHHHhCCCChHHH
Q 028992           89 ----CGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE-------------------------LYQKSLEVSTKAPELH  137 (200)
Q Consensus        89 ----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~-------------------------~y~kAle~~~k~~e~~  137 (200)
                          .+           ++++|+.+|++|++.+|.  +.                         .|++++++ +..+.++
T Consensus        98 g~g~~~-----------d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~  165 (212)
T 3rjv_A           98 RQAGAT-----------DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE  165 (212)
T ss_dssp             GGGSSC-----------CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred             CCCCcc-----------CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence                44           999999999999999883  11                         56666666 5677788


Q ss_pred             HHHHHHHHhc
Q 028992          138 MELHKHGINQ  147 (200)
Q Consensus       138 ~~l~~~~~~~  147 (200)
                      ++|+..+...
T Consensus       166 ~~Lg~~y~~g  175 (212)
T 3rjv_A          166 YWAGMMFQQG  175 (212)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHcC
Confidence            8888877643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=4.9e-09  Score=87.44  Aligned_cols=118  Identities=13%  Similarity=0.105  Sum_probs=93.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HY   77 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~   77 (200)
                      +.+.|++|++.++++++..|....      .++.+|.++...+++          ++|+..|++|+++.++.      ..
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY----------EYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCH----------HHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHhcCCchHHHHH
Confidence            556899999999999999887664      355677777776677          99999999999987665      67


Q ss_pred             HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH---HhCCCCH-------------------------HHHHHHHh
Q 028992           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV---DEEPTNE-------------------------LYQKSLEV  129 (200)
Q Consensus        78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl---~l~P~~~-------------------------~y~kAle~  129 (200)
                      ++.++|.+|..+|           ++++|+.+|++|+   +..|++.                         .|++++++
T Consensus       157 ~~~~lg~~y~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          157 IENAIANIYAENG-----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8999999999999           9999999999999   6667643                         56666665


Q ss_pred             CCC------ChHHHHHHHHHHHhcc
Q 028992          130 STK------APELHMELHKHGINQQ  148 (200)
Q Consensus       130 ~~k------~~e~~~~l~~~~~~~~  148 (200)
                      .++      ...+|.++|..+..++
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcC
Confidence            432      2667777887776554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.02  E-value=1.3e-10  Score=105.39  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=82.1

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA--   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a--   85 (200)
                      +.+++.|++|++.++++++++|+++.+++++|.++..+|++          ++|+..|++|++++|++..++.++|.+  
T Consensus        50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF----------RAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999          999999999999999999999999999  


Q ss_pred             HHhcCcccCChHHhhcCHHHHHHHHH-----------HHHHhCCCCH
Q 028992           86 HTSCGFLTADLSEAKGDFDKASECFQ-----------RAVDEEPTNE  121 (200)
Q Consensus        86 ~~~~G~l~~~~~~a~~~~d~A~~~fq-----------kAl~l~P~~~  121 (200)
                      +..+|           ++++|+++++           ++++++|++.
T Consensus       120 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          120 IVKQK-----------AFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHH-----------HHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHH-----------HHHHHhccccccchhHhhhhhhhcccccccc
Confidence            77766           9999999999           9999988864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.00  E-value=4.7e-09  Score=97.79  Aligned_cols=115  Identities=9%  Similarity=-0.105  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .++++++.++++++.+|.+..+|+..+.++..+++.        .++++++.+++++++||++..+|...|.++...|  
T Consensus        88 ~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~--------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~--  157 (567)
T 1dce_A           88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP--------NWARELELCARFLEADERNFHCWDYRRFVAAQAA--  157 (567)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC--
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc--------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC--
Confidence            399999999999999999999999999999988722        2399999999999999999999999999998866  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------------HHHHHHHhCCCChHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------------LYQKSLEVSTKAPELH  137 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------------~y~kAle~~~k~~e~~  137 (200)
                              ..+++++++++++++.+|.|.                                   .|.+|++++|+...+|
T Consensus       158 --------~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW  229 (567)
T 1dce_A          158 --------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW  229 (567)
T ss_dssp             --------CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred             --------CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence                    268999999999999999986                                   2346778899999999


Q ss_pred             HHHHHHHH
Q 028992          138 MELHKHGI  145 (200)
Q Consensus       138 ~~l~~~~~  145 (200)
                      ..++-.+.
T Consensus       230 ~y~~~ll~  237 (567)
T 1dce_A          230 FYHRWLLG  237 (567)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHh
Confidence            88776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.99  E-value=2e-10  Score=99.36  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=49.7

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+++.|++|++.++++++++|+++.+++++|.+|..++++          ++|+..|++|++++|++..++.+|+.+...
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~----------~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM----------DSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH----------HHHHHHHHHTTC------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999998          999999999999999999999999998544


Q ss_pred             -cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           89 -CGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        89 -~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                       .+           +.+++...|++++..+|++..
T Consensus       311 ~~~-----------~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKA-----------LYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------------------
T ss_pred             HHH-----------HHHHHHHHHHHhhCCCCCCCC
Confidence             34           889999999999999998763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.99  E-value=6e-10  Score=94.09  Aligned_cols=90  Identities=20%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------   75 (200)
                      +.+++.|++|++.+++++++.+..      +.++.++|.++..+|++          ++|+.+|++|+++.+..      
T Consensus        46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM----------PEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG----------GGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence            455678899999999999887543      56889999999999888          77777777777774321      


Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..++.++|.+|.. |           ++++|+.+|++|+++.|.
T Consensus       116 a~~~~~lg~~~~~-g-----------~~~~A~~~~~~Al~~~~~  147 (307)
T 2ifu_A          116 AMALDRAGKLMEP-L-----------DLSKAVHLYQQAAAVFEN  147 (307)
T ss_dssp             HHHHHHHHHHHTT-T-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-C-----------CHHHHHHHHHHHHHHHHh
Confidence            3566677777766 7           777777777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.99  E-value=8.8e-10  Score=94.65  Aligned_cols=88  Identities=22%  Similarity=0.332  Sum_probs=77.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----
Q 028992            8 FDRLLLSEHNRKTAEANYAKDP-------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P-------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----   76 (200)
                      +-+++.+++|++.+++++++.+       ..+.++.++|.++..+|++          ++|+..|++|+++.|+..    
T Consensus       153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY----------EDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHHcCChHH
Confidence            3467789999999999998844       3456899999999999999          999999999999976554    


Q ss_pred             --HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           77 --YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        77 --~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                        .++.++|.+|..+|           ++++|+.+|++|+++
T Consensus       223 ~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQS-----------QYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence              48999999999999           999999999999994

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.99  E-value=8.9e-09  Score=90.63  Aligned_cols=125  Identities=12%  Similarity=0.013  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCccc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT   93 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~   93 (200)
                      -++|++.++.++.+||.+.++|+..+.++..++......+....+++++.+++.+|.++|++..+|...+.++..+|   
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~---  122 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP---  122 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS---
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC---
Confidence            35789999999999999999999999999887652111122334699999999999999999999999999999987   


Q ss_pred             CChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           94 ADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        94 ~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                            ...+++++.++.++++.+|.|.                      .+.++++.+|....++.+.+..+...
T Consensus       123 ------~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          123 ------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             ------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             ------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence                  2248999999999999999997                      56778889999999999999877643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.98  E-value=1.5e-09  Score=88.12  Aligned_cols=93  Identities=20%  Similarity=0.221  Sum_probs=83.4

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLD----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKH   76 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~   76 (200)
                      -+-+.+.|++|+..++++++.+|++    +.++..+|.++...|++          ++|+..|++++++      .|...
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY----------AKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhcccccHHHH
Confidence            3457789999999999999999999    47888999999999998          9999999999988      66778


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      .++..+|.+|...|           ++++|+.+|++++++.|..
T Consensus        84 ~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           84 KASGNLGNTLKVLG-----------NFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHh
Confidence            89999999999988           9999999999999886543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.98  E-value=6.5e-10  Score=93.74  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=92.2

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------H
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------H   76 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~   76 (200)
                      -+++.|++|++.+++++++.|...+      ++.++|.++..+|++          ++|+..|++++++.|+.      .
T Consensus       198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF----------ETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHhCcCchHHH
Confidence            4567888888888888887665544      888888888888888          99999999999998877      7


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHh
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEV  129 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~  129 (200)
                      .++.++|.+|...|           ++++|+.+|++++++.+...                           .|++++++
T Consensus       268 ~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            78899999999988           99999999999998865431                           66666666


Q ss_pred             CCCC------hHHHHHHHHHHHhcc
Q 028992          130 STKA------PELHMELHKHGINQQ  148 (200)
Q Consensus       130 ~~k~------~e~~~~l~~~~~~~~  148 (200)
                      .++.      ..++..++..+...+
T Consensus       337 ~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          337 SREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchhHHHHHHHHHHHHhh
Confidence            3322      556677776665444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=6.2e-10  Score=93.86  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------HHHH
Q 028992           14 SEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------TLWS   81 (200)
Q Consensus        14 fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------a~~~   81 (200)
                      |++|++.+++++.+      .|..+.++.++|.++..+|++          ++|+..|++++++.|+..+      ++.+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF----------RDAVIAHEQRLLIAKEFGDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            89999999998876      556677899999999999998          9999999999999877665      8999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCC-
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKA-  133 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~-  133 (200)
                      +|.+|...|           ++++|+.+|++++++.|...                           .|++++++.++. 
T Consensus       233 la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  301 (406)
T 3sf4_A          233 LGNAYIFLG-----------EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN  301 (406)
T ss_dssp             HHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcC-----------ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence            999999998           99999999999999877651                           666777765444 


Q ss_pred             -----hHHHHHHHHHHHhcc
Q 028992          134 -----PELHMELHKHGINQQ  148 (200)
Q Consensus       134 -----~e~~~~l~~~~~~~~  148 (200)
                           +.++..++..+..++
T Consensus       302 ~~~~~~~~~~~la~~~~~~g  321 (406)
T 3sf4_A          302 DRIGEGRACWSLGNAYTALG  321 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHcC
Confidence                 567778887776544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.95  E-value=1.3e-09  Score=93.83  Aligned_cols=120  Identities=15%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             HHhchHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-------C
Q 028992            9 DRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-------K   75 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-------~   75 (200)
                      -+.+.|++|++.+++++.+.      |..+.+++++|.++..+|++          ++|+..+++|+++.++       .
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT----------HVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHHHhCCCchhhH
Confidence            35678999999999999863      34677999999999999998          9999999999998554       2


Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH-------------------------HHHHHHH
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE-------------------------LYQKSLE  128 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~-------------------------~y~kAle  128 (200)
                      ..++.++|.+|..+|           ++++|+.+|++|+++.+.  +.                         .|+++++
T Consensus       182 ~~~~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          182 IQSLFVIAGNYDDFK-----------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            457889999999999           999999999999987432  11                         7778887


Q ss_pred             -----hCCCChHHHHHHHHHHHhccc
Q 028992          129 -----VSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus       129 -----~~~k~~e~~~~l~~~~~~~~~  149 (200)
                           .+|..+.++.+++..+..++-
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~  276 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQ  276 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCC
Confidence                 666778889999988876553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.94  E-value=1.1e-08  Score=85.25  Aligned_cols=86  Identities=9%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNL------TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------   77 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l------~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------   77 (200)
                      +.+.|++|.+.++++++..+.+++..      ..+|.++...+++          ++|+..|++|+++.+...+      
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY----------EYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH----------HHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHHhcccccHHHHHH
Confidence            45689999999999999988887732      2466666665566          9999999999998666444      


Q ss_pred             HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        78 a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      ++.++|.+|..+|           ++++|+.+|++|++.
T Consensus       157 ~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          157 IENAIANIYAENG-----------YLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            7899999999999           999999999999963

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.94  E-value=3.5e-10  Score=96.64  Aligned_cols=131  Identities=17%  Similarity=0.127  Sum_probs=102.0

Q ss_pred             HHHhchHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCC
Q 028992            8 FDRLLLSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAK   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~   75 (200)
                      +.+++.+++|++.+++++++      +|..+.++.++|.++..+|++          ++|+..|++++++      +|..
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A           96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF----------DEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHhhchHHH
Confidence            34678899999999999988      788899999999999999998          9999999999999      7778


Q ss_pred             HHHHHHHHHHHHhcCc------ccCChHHhhcCHHHHHHHHHHHHHhCCCC---H------------------------H
Q 028992           76 HYTLWSLGNAHTSCGF------LTADLSEAKGDFDKASECFQRAVDEEPTN---E------------------------L  122 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~------l~~~~~~a~~~~d~A~~~fqkAl~l~P~~---~------------------------~  122 (200)
                      ..++.++|.+|...|.      +..-..++...+++|+.+|++++++.+..   .                        .
T Consensus       166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH  245 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            8899999999999881      00111222222999999999998874221   1                        6


Q ss_pred             HHHHHHhCCCChH------HHHHHHHHHHhcc
Q 028992          123 YQKSLEVSTKAPE------LHMELHKHGINQQ  148 (200)
Q Consensus       123 y~kAle~~~k~~e------~~~~l~~~~~~~~  148 (200)
                      |++++++.++...      .+.+++..+..++
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (411)
T 4a1s_A          246 HQERLRIAREFGDRAAERRANSNLGNSHIFLG  277 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence            7777777665444      7788888777554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.92  E-value=1.3e-09  Score=79.49  Aligned_cols=111  Identities=15%  Similarity=0.077  Sum_probs=86.5

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------H
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDA------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------H   76 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~   76 (200)
                      -..+.+++|++.++++++..+...      .++.++|.++..+|++          ++|+..|++++++.++.      .
T Consensus        20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF----------ETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCcHHHH
Confidence            456789999999999998866433      4889999999999998          99999999999987664      6


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .++.++|.++...|           ++++|+.+|++++++.+....       .+..+..+.+++..+..+
T Consensus        90 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~la~~~~~~  142 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELKD-------RIGEGRACWSLGNAYTAL  142 (164)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHccc-------hHhHHHHHHHHHHHHHHc
Confidence            78899999999998           999999999999987432210       011144556666655543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.92  E-value=4.7e-08  Score=86.01  Aligned_cols=152  Identities=10%  Similarity=-0.036  Sum_probs=111.0

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G   90 (200)
                      ...++++++.++.++..+|.+..+|+..+.++..+++.        .+++++.++++++++||++..+|...+.++...|
T Consensus        87 ~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~--------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~  158 (331)
T 3dss_A           87 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP--------NWARELELCARFLEADERNFHCWDYRRFVAAQAA  158 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            34588999999999999999999999999999987741        2389999999999999999999999999998887


Q ss_pred             cccCChHHhhcC-HHHHHHHHHHHHHhCCCCH-----------------------------------HHHHHHHhCCCCh
Q 028992           91 FLTADLSEAKGD-FDKASECFQRAVDEEPTNE-----------------------------------LYQKSLEVSTKAP  134 (200)
Q Consensus        91 ~l~~~~~~a~~~-~d~A~~~fqkAl~l~P~~~-----------------------------------~y~kAle~~~k~~  134 (200)
                                 . ++++++++.++++.+|.|.                                   .+.+++.++|++.
T Consensus       159 -----------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          159 -----------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             -----------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             -----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence                       6 6899999999999999987                                   2234556788888


Q ss_pred             HHHHHHHHHHHhccccCCCCCcch-------hhhhcccccchhhhhhhHHHHHHHHH
Q 028992          135 ELHMELHKHGINQQTLGGGSSASS-------AQSSKKKSSDLKYDIFGWAILAVGIV  184 (200)
Q Consensus       135 e~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~y~~~g~~~l~~~~~  184 (200)
                      .++.-+.-.+....+.  ...+..       ....-+...+.-.|. -|++++.++.
T Consensus       228 SaW~Y~r~ll~~~~~~--~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~  281 (331)
T 3dss_A          228 SAWFYHRWLLGAGSGR--CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILL  281 (331)
T ss_dssp             HHHHHHHHHHHSSSCG--GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHH
Confidence            8886555444422211  101100       111223344444554 6888887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=1.9e-09  Score=90.97  Aligned_cols=88  Identities=13%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             chHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH------HHH
Q 028992           12 LLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH------YTL   79 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~------~a~   79 (200)
                      +.+++|++.+++++++.|.+      +.++.++|.++..+|++          ++|+..|++++++.|++.      .++
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF----------DEAAASLQKEKSMYKEMENYPTCYKKC  198 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence            67888888888888887754      67788888888888888          888888888888876543      467


Q ss_pred             HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        80 ~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .++|.++..+|           ++++|+.+|++++ ++|++.
T Consensus       199 ~~~g~~~~~~g-----------~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          199 IAQVLVQLHRA-----------DYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHTT-----------CHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHh-CCCCCC
Confidence            78888888877           8999999999988 888764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.91  E-value=4.3e-09  Score=75.54  Aligned_cols=52  Identities=21%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++|+..|+++++++|+++.+++++|.+|...|           ++++|+.+|+++++++|++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~   53 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-----------QFDAALPHLRAALDFDPTYS   53 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCCCcH
Confidence            57899999999999999999999999999998           99999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.91  E-value=2e-08  Score=89.06  Aligned_cols=119  Identities=11%  Similarity=-0.017  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c-CCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLEL-S-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l-~-~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ++++++.++.++..+|.+..+|+..+.++..+ + ++          +++++.++++|++||++..+|...+.++..+|.
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~----------~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~  174 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP----------VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST  174 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC----------HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            44555555555555555555555555555444 3 33          566666666666666666666666666655551


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      ..+.   ....+++++++++++++.+|.|.                            .+.++++++|++..++..+...
T Consensus       175 ~~~~---~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          175 LGRI---SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF  251 (349)
T ss_dssp             TTCC---CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccc---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            1100   00113399999999999999986                            4556678899999999887765


Q ss_pred             HH
Q 028992          144 GI  145 (200)
Q Consensus       144 ~~  145 (200)
                      +.
T Consensus       252 l~  253 (349)
T 3q7a_A          252 LK  253 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.88  E-value=2.1e-08  Score=83.52  Aligned_cols=89  Identities=9%  Similarity=-0.028  Sum_probs=78.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH---HhCCCCH----
Q 028992           10 RLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL---VIDPAKH----   76 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL---~ldP~~~----   76 (200)
                      ..+.+++|++.++++++..+..      ..+++++|.++..+|++          ++|+..|++|+   +..|++.    
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~A~~~~~kal~~~~~~~~~~~~~~  196 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL----------KKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhcCccccchH
Confidence            3458999999999999876654      67999999999999998          99999999999   5577754    


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      .+++++|.+|..+|           +|++|+.+|++|+++.++
T Consensus       197 ~~~~nlg~~y~~~~-----------~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          197 KVRYNHAKALYLDS-----------RYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHHHHh
Confidence            68999999999999           999999999999998654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=1.6e-08  Score=77.74  Aligned_cols=84  Identities=21%  Similarity=0.275  Sum_probs=70.0

Q ss_pred             hchHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH------hCCCCHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV------IDPAKHYTLWSLG   83 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~------ldP~~~~a~~~LG   83 (200)
                      .+.|++|++.++.... +| ..+.++..+|.++...|++          ++|+..|+++++      ..|....+++++|
T Consensus         5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   73 (203)
T 3gw4_A            5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRF----------DEARASFQALQQQAQKSGDHTAEHRALHQVG   73 (203)
T ss_dssp             --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            4678888885544433 55 7889999999999999988          999999999999      5666778899999


Q ss_pred             HHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        84 ~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      .+|...|           ++++|+.+|++++++
T Consensus        74 ~~~~~~g-----------~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           74 MVERMAG-----------NWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            9999988           999999999999988

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.86  E-value=4.3e-09  Score=87.74  Aligned_cols=89  Identities=11%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             HHHhchHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-----
Q 028992            8 FDRLLLSEHNRKTAEANYA-------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-----   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~-------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-----   75 (200)
                      +.+++.|++|++.++++++       ..+..+.+++++|.++..++++          ++|+..+++|+++.++.     
T Consensus       165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y----------~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY----------EESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHcCcHHH
Confidence            4567789999999999994       2334556889999999999999          99999999999997665     


Q ss_pred             -HHHHHHHHHHHHhcCcccCChHHhhcC-HHHHHHHHHHHHHhC
Q 028992           76 -HYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASECFQRAVDEE  117 (200)
Q Consensus        76 -~~a~~~LG~a~~~~G~l~~~~~~a~~~-~d~A~~~fqkAl~l~  117 (200)
                       ..+++++|.+|..+|           + +++|+.+|++|+.+.
T Consensus       235 ~~~~~~~lg~~~~~~g-----------~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLE-----------YEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHH
Confidence             889999999999988           6 699999999999763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.86  E-value=7.7e-09  Score=88.93  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=81.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHH-----hCCCCH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDP------LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKH   76 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P------~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~-----ldP~~~   76 (200)
                      +.+++.|++|++.+++++++.+      ..+.++.++|.++..+|++          ++|+..|++|++     .+|..+
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD----------QMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhhCChhHH
Confidence            4567899999999999998643      2356889999999999998          999999999999     899999


Q ss_pred             HHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        77 ~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      .+++++|.+|..+|           ++++|+.+|++++++.+.
T Consensus       262 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          262 KVLFGLSWTLCKAG-----------QTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence            99999999999999           999999999999998554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=2.4e-08  Score=88.50  Aligned_cols=119  Identities=12%  Similarity=-0.015  Sum_probs=103.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      +..+.++|++.+++++.+||.+.++|+..+.++..++. +          ++++..++++|.++|++..+|...+.++..
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l----------~eEL~~~~~~L~~nPKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL----------EDELRLMNEFAVQNLKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33466899999999999999999999999999999874 5          999999999999999999999999999987


Q ss_pred             c-CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------------HHHHHHHhCCCChHHHH
Q 028992           89 C-GFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------LYQKSLEVSTKAPELHM  138 (200)
Q Consensus        89 ~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------------~y~kAle~~~k~~e~~~  138 (200)
                      + +          .+++++++++.++++.+|.|.                             .+.++++.+|....++.
T Consensus       136 l~~----------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~  205 (349)
T 3q7a_A          136 ISP----------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG  205 (349)
T ss_dssp             HCC----------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5 3          157899999999999999986                             34566788888888888


Q ss_pred             HHHHHHHhcc
Q 028992          139 ELHKHGINQQ  148 (200)
Q Consensus       139 ~l~~~~~~~~  148 (200)
                      +.+..+....
T Consensus       206 ~R~~lL~~l~  215 (349)
T 3q7a_A          206 WRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHTTST
T ss_pred             HHHHHHHhcc
Confidence            8887776543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.85  E-value=9.4e-09  Score=88.75  Aligned_cols=72  Identities=24%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--P~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      +++++|.++..+|++          ++|+..|++++.-+  |. .+++++++|.++..+|           +.++|..+|
T Consensus       173 a~~~LG~al~~LG~~----------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-----------r~deA~~~l  231 (282)
T 4f3v_A          173 AGVAHGVAAANLALF----------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-----------NESAAVALL  231 (282)
T ss_dssp             HHHHHHHHHHHTTCH----------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCH----------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence            455555555555555          56666666555433  44 4455566666666655           666666666


Q ss_pred             HHHHHhCCCCHHHHHHH
Q 028992          111 QRAVDEEPTNELYQKSL  127 (200)
Q Consensus       111 qkAl~l~P~~~~y~kAl  127 (200)
                      ++++..+|+ +....+|
T Consensus       232 ~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          232 EWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHSCC-HHHHHHH
T ss_pred             HHHHhcCCc-HHHHHHH
Confidence            666666655 5444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.84  E-value=2e-09  Score=87.34  Aligned_cols=129  Identities=17%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcc----------cccccccHHHHHHHHHHHHHh-
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFES----------VSDSKKIINEAISKFEEALVI-   71 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~----------~~~~~~~~~eAi~~le~AL~l-   71 (200)
                      .+++.+++|++.+++++++.|..      +.++.++|.++..+|++..          ..+....+++|+..+++++.+ 
T Consensus        94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~  173 (338)
T 3ro2_A           94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV  173 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45667888888888887765543      3377888888888777100          001111249999999999887 


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-------------------------
Q 028992           72 -----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------  121 (200)
Q Consensus        72 -----dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-------------------------  121 (200)
                           .|....++.++|.++...|           ++++|+.+|++++++.|...                         
T Consensus       174 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          174 TALGDRAAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 4555678899999999988           99999999999998865431                         


Q ss_pred             --HHHHHHHhCCCC------hHHHHHHHHHHHhcc
Q 028992          122 --LYQKSLEVSTKA------PELHMELHKHGINQQ  148 (200)
Q Consensus       122 --~y~kAle~~~k~------~e~~~~l~~~~~~~~  148 (200)
                        .+++++++.++.      +..+..++..+..++
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  277 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence              666777766555      667778888777554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=9.6e-09  Score=79.05  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=88.0

Q ss_pred             HHhchHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCC----C
Q 028992            9 DRLLLSEHNRKTAEANYA------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPA----K   75 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~----~   75 (200)
                      -+++.|++|++.+++++.      ..|..+.++.++|.++..+|++          ++|+..|++++++   .|+    .
T Consensus        37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW----------DAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCccHHHH
Confidence            456789999999999998      6677888999999999999998          9999999999999   443    3


Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NELYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      ..+++++|.++..+|           ++++|+.+|++++++.+.  +...         ...++.+++..+..++
T Consensus       107 ~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A          107 SANAYEVATVALHFG-----------DLAGARQEYEKSLVYAQQADDQVA---------IACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhccchHH---------HHHHHHHHHHHHHHCc
Confidence            567899999999988           999999999999977332  1111         1334567777776544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.80  E-value=2.1e-08  Score=87.23  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCC-cccccccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992           27 KDPLDADNLTRWGEALLELSQF-ESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~-~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      ++|+|++.++..|.++.....- ..+........+|...+++|+++||+  +..+|..||..|...    |  +...|+.
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v----P--p~~gGd~  220 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA----P--ESFGGGM  220 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS----C--TTTTCCH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC----C--CccCCCH
Confidence            3477899999999999885543 45667888899999999999999999  777999999999884    1  1112499


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 028992          104 DKASECFQRAVDEEPTN  120 (200)
Q Consensus       104 d~A~~~fqkAl~l~P~~  120 (200)
                      ++|.++|+||++++|+.
T Consensus       221 ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          221 EKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999975

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.79  E-value=1.8e-08  Score=73.32  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC------C
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA------K   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------~   75 (200)
                      +-+++.+++|++.+++++...+..      +.++.++|.++..++++          ++|+..+++++++.+.      .
T Consensus        59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY----------EKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHccchHhH
Confidence            346778999999999999876553      67899999999999998          9999999999988433      2


Q ss_pred             HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        76 ~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..++.++|.+|...|           ++++|+.++++++++...
T Consensus       129 ~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          129 GRACWSLGNAYTALG-----------NHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHH
Confidence            567889999999988           999999999999987543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=1.2e-08  Score=88.06  Aligned_cols=111  Identities=12%  Similarity=-0.010  Sum_probs=93.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-K-HYTLWSLGNAH   86 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~-~~a~~~LG~a~   86 (200)
                      -.++.|++|++.++.....+|++. .++.+|.++++.+++          ++|+..|++++...+. . .+++++||.++
T Consensus       113 ~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~----------~dA~~~l~~a~~~~d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          113 AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW----------TDVIDQVKSAGKWPDKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH----------HHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH----------HHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence            356799999999999999999999 999999999999999          9999999998876422 2 46999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhC--CC-CH---------------------HHHHHHHhCCCChHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE--PT-NE---------------------LYQKSLEVSTKAPELHMELHK  142 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~--P~-~~---------------------~y~kAle~~~k~~e~~~~l~~  142 (200)
                      ..+|           ++++|+.+|++++.-.  |. ..                     .|+++++.+|+ ++.+..|..
T Consensus       182 ~~LG-----------~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          182 ANLA-----------LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHCC-----------CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            9999           9999999999999655  55 21                     78888899988 776655543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.75  E-value=1.1e-07  Score=68.84  Aligned_cols=76  Identities=21%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCcccCChHHhhcC
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-------PAKHYTLWSLGNAHTSCGFLTADLSEAKGD  102 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-------P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~  102 (200)
                      -+++-.+.+|..++..++|          ..|+.-|++|++..       +..++++.+||.+|..+|           +
T Consensus         3 Lsa~dc~~lG~~~~~~~~y----------~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-----------~   61 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADY----------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------D   61 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------C
T ss_pred             CCHHHHHHHHHHHHHccch----------HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-----------C
Confidence            4567788999999999998          99999999999873       457899999999999999           9


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Q 028992          103 FDKASECFQRAVDEEPTNELYQKS  126 (200)
Q Consensus       103 ~d~A~~~fqkAl~l~P~~~~y~kA  126 (200)
                      +++|+.++++|++++|++......
T Consensus        62 ~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A           62 LDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHhh
Confidence            999999999999999999754433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.72  E-value=2.5e-08  Score=86.75  Aligned_cols=94  Identities=12%  Similarity=-0.020  Sum_probs=84.1

Q ss_pred             hHHHHhchHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh-----cCCcccccccccHHHHHHHHHHHHHhCCCC-HH
Q 028992            6 SDFDRLLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLEL-----SQFESVSDSKKIINEAISKFEEALVIDPAK-HY   77 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~~P~--d~~~l~~lG~al~~l-----~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-~~   77 (200)
                      .++..+.....|+...++++++||+  +..+|+-+|..|...     |+.          +.|..+|++||+|+|+. .+
T Consensus       171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~----------ekA~~~ferAL~LnP~~~id  240 (301)
T 3u64_A          171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM----------EKAHTAFEHLTRYCSAHDPD  240 (301)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH----------HHHHHHHHHHHHHCCTTCSH
T ss_pred             CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH----------HHHHHHHHHHHHhCCCCCch
Confidence            4556778889999999999999999  788999999999885     454          99999999999999986 99


Q ss_pred             HHHHHHHHHHhc-CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           78 TLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        78 a~~~LG~a~~~~-G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      +++.+|..+... |           ++++|..++++|+..+|..
T Consensus       241 ~~v~YA~~l~~~~g-----------d~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          241 HHITYADALCIPLN-----------NRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHTTTTTT-----------CHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCC
Confidence            999999999874 7           9999999999999988773

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.71  E-value=1.5e-07  Score=84.24  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccc-c---------------------------------ccccH
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-D---------------------------------SKKII   58 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~-~---------------------------------~~~~~   58 (200)
                      .+.+|+..++++++++|+++.++..++.++......+... .                                 ..+.+
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~  293 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT  293 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence            3689999999999999999999998888886432211000 0                                 12345


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      ++|+..+++|+.+||+ ..+|..+|.++...|           ++++|++.|++|++++|....
T Consensus       294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G-----------~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKG-----------MNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCcCh
Confidence            6666666666666653 455555666666655           666666666666666665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.69  E-value=1e-07  Score=85.34  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CGF   91 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~-~G~   91 (200)
                      .+++|++.++++.+.+|.++..++++|.+|...      ....+.+++|+..|++|.   |+++.++++||.+|.. .+ 
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g------~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-  263 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA------TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-  263 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG------GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-
Confidence            889999999999999999999999999998542      122345699999999998   9999999999999542 11 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                              .+++++|+.+|++|++.+....                       .|++|.   +..++++++|+..+..
T Consensus       264 --------~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          264 --------LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             --------GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             --------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence                    4499999999999997652222                       455555   7889999999988775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.67  E-value=1e-07  Score=80.82  Aligned_cols=118  Identities=12%  Similarity=0.049  Sum_probs=93.9

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH------H
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------T   78 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~-----~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~------a   78 (200)
                      ..+.+++|+..+++++...|.+..     ++..+|.++...|++          ++|+..|++++.+.|...+      +
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL----------TRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            356899999999999999886532     678899999999998          9999999999998776543      3


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC--------CCH---------------------HHHHHHHh
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP--------TNE---------------------LYQKSLEV  129 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P--------~~~---------------------~y~kAle~  129 (200)
                      +.++|.++...|           ++++|+.+|++++++.+        ...                     .+++++++
T Consensus        96 ~~~la~~~~~~G-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           96 LIQQSEILFAQG-----------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            678999999999           99999999999998752        221                     67778877


Q ss_pred             CCCC-----hHHHHHHHHHHHhcc
Q 028992          130 STKA-----PELHMELHKHGINQQ  148 (200)
Q Consensus       130 ~~k~-----~e~~~~l~~~~~~~~  148 (200)
                      .++.     ...+.+++..+..++
T Consensus       165 ~~~~~~~~~~~~~~~la~~~~~~g  188 (373)
T 1hz4_A          165 LSSYQPQQQLQCLAMLIQCSLARG  188 (373)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred             hhccCcHHHHHHHHHHHHHHHHcC
Confidence            7653     356777777776544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.67  E-value=6.8e-08  Score=77.41  Aligned_cols=89  Identities=19%  Similarity=0.070  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--AKHYTLWSLGNAHTSCG   90 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP--~~~~a~~~LG~a~~~~G   90 (200)
                      .+++|++.++++.  +++++.+++++|.++..      +....+.+++|+..|++|++.+|  +++.++++||.+|..-.
T Consensus        68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~------g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~  139 (212)
T 3rjv_A           68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVN------RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV  139 (212)
T ss_dssp             CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTC------GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHc------CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence            6899999999984  57899999999999865      11223455999999999999999  46999999999998811


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                             ...+++++|+.+|++|+++
T Consensus       140 -------g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          140 -------HGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             -------SSSCCHHHHHHHHHHHHHT
T ss_pred             -------CCCCCHHHHHHHHHHHHHc
Confidence                   0123999999999999999

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.64  E-value=1.7e-07  Score=86.10  Aligned_cols=99  Identities=13%  Similarity=0.023  Sum_probs=82.4

Q ss_pred             HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCC
Q 028992            8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPA   74 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~   74 (200)
                      +.+.+.|++|+..+++++++        +|.-+.++.++|.+|..+|++          ++|+..++++|++     -|+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----------~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY----------EEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHHHHcCCC
Confidence            34557899999999999964        344456789999999999998          9999999999987     566


Q ss_pred             CHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 028992           75 KHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKSL  127 (200)
Q Consensus        75 ~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kAl  127 (200)
                      +++   .+.+||.+|..+|           ++++|+.+|++|+++     -|+++...+.+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  438 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAG-----------HIEVGHGMICKAYAILLVTHGPSHPITKDLE  438 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            665   5679999999999           999999999999975     68888665554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.63  E-value=4.4e-07  Score=68.57  Aligned_cols=84  Identities=12%  Similarity=0.047  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS----C   89 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~----~   89 (200)
                      +++|++.++++.+.  +++++++++|.+|..-      ....+.+++|+..|++|.+.  .+++++++||.+|..    .
T Consensus        41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G------~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~  110 (138)
T 1klx_A           41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENG------KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  110 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC------SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC------CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence            44577777777765  6788888888887651      11223448888888888776  678888888888876    4


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      +           ++++|+.+|++|.+...
T Consensus       111 ~-----------d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          111 K-----------NEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             C-----------CHHHHHHHHHHHHHTTC
T ss_pred             c-----------CHHHHHHHHHHHHHCCC
Confidence            4           88888888888887744

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.62  E-value=1.7e-07  Score=84.57  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=83.6

Q ss_pred             hHHHHhchHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----C
Q 028992            6 SDFDRLLLSEHNRKTAEANYAK-----DPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----D   72 (200)
Q Consensus         6 ~~~~~l~~fe~A~~~~e~a~~~-----~P~d---~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----d   72 (200)
                      +++.+.+.|++|++.+++++++     .|++   +.++.++|.+|..+|++          ++|+..++++|.+     -
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~----------~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL----------EEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhHHHHcC
Confidence            3456677899999999999964     3444   56789999999999998          9999999999977     4


Q ss_pred             CCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 028992           73 PAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKSL  127 (200)
Q Consensus        73 P~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kAl  127 (200)
                      |++|+   .+++||.+|..+|           ++++|+.+|++|+++     -|+++.+...+
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQG-----------MFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            66665   5789999999999           999999999999986     57777666544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.58  E-value=1.6e-07  Score=66.66  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNA   85 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~~a~~~LG~a   85 (200)
                      +-+++.|++|++.++++++++|+++.+++++|.++..+|++          ++|+..|+++++++|+.  ..+.-.+..+
T Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A           17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT----------DDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            35678999999999999999999999999999999999998          99999999999998764  4444556666


Q ss_pred             HHhcC
Q 028992           86 HTSCG   90 (200)
Q Consensus        86 ~~~~G   90 (200)
                      +...+
T Consensus        87 l~~~~   91 (100)
T 3ma5_A           87 KLKAE   91 (100)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            65544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.57  E-value=1.1e-07  Score=86.06  Aligned_cols=95  Identities=7%  Similarity=0.007  Sum_probs=78.6

Q ss_pred             hchHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCCCHH
Q 028992           11 LLLSEHNRKTAEANYAK-----DPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHY   77 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~-----~P~d~---~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~~~~   77 (200)
                      .+.|++|+..+++++++     .|+++   .++.++|.+|..+|++          ++|+..++++|++     -|++++
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----------~eA~~~~~~aL~i~~~~lG~~Hp~  380 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW----------EGALKYGQKIIKPYSKHYPVYSLN  380 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHHHHHHHcCCCChH
Confidence            34689999999999973     45554   5678999999999998          9999999999977     566665


Q ss_pred             ---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 028992           78 ---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE-----EPTNELYQKS  126 (200)
Q Consensus        78 ---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l-----~P~~~~y~kA  126 (200)
                         .+.+||.+|..+|           ++++|+.+|+||+++     -|+++.....
T Consensus       381 ~a~~l~nLa~~~~~qg-----------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          381 VASMWLKLGRLYMGLE-----------NKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence               5789999999999           999999999999986     4777655543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.54  E-value=8e-07  Score=67.10  Aligned_cols=96  Identities=9%  Similarity=-0.051  Sum_probs=75.5

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cC
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CG   90 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~-~G   90 (200)
                      ..+++|++.++++.+.+..++.    +|.++......          ++|+..|++|.+.  .++.++++||.+|.. .|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~----------~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g   72 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINK----------QKLFQYLSKACEL--NSGNGCRFLGDFYENGKY   72 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCH----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence            4688999999999998855554    88888765444          7799999999987  789999999999987 11


Q ss_pred             cccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        91 ~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                              ..+++++|+.+|++|.+..               .++++.+|+..+..
T Consensus        73 --------~~~d~~~A~~~~~~Aa~~g---------------~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           73 --------VKKDLRKAAQYYSKACGLN---------------DQDGCLILGYKQYA  105 (138)
T ss_dssp             --------SCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHH
T ss_pred             --------CCccHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHC
Confidence                    1239999999999998762               46666777766653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.52  E-value=4.4e-07  Score=69.73  Aligned_cols=94  Identities=15%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-P-AKHYTLWSLGNAHT   87 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld-P-~~~~a~~~LG~a~~   87 (200)
                      ..-....+++.|.+....++...++.+++|.+|....+.       ..+.++|..|+..++.+ | ..-+.+|.||..++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-------~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-------DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            334566778888888888999999999999999975443       34577999999999988 6 67799999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           +|++|..|++..|+.+|+|.
T Consensus        86 klg-----------~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           86 RLK-----------EYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             Hhh-----------hHHHHHHHHHHHHHhCCCCH
Confidence            999           99999999999999999996

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.52  E-value=1.9e-06  Score=76.64  Aligned_cols=109  Identities=11%  Similarity=-0.028  Sum_probs=72.5

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE----LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~----l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      ...+++|++.++++.+.  +++++++.+|.++..    .+++          ++|+..|++|.+.  .++.++++||.+|
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~----------~~A~~~~~~a~~~--~~~~a~~~Lg~~y  121 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY----------AQAVIWYKKAALK--GLPQAQQNLGVMY  121 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            35677788888887765  678888888888876    3333          7777777777664  4777777777777


Q ss_pred             Hh----cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCCCChHHHHH
Q 028992           87 TS----CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHME  139 (200)
Q Consensus        87 ~~----~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~k~~e~~~~  139 (200)
                      ..    .+           ++++|+.+|++|++.+....                       .|+++++.  ..++.+.+
T Consensus       122 ~~g~g~~~-----------~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~  188 (490)
T 2xm6_A          122 HEGNGVKV-----------DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQ  188 (490)
T ss_dssp             HHTSSSCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HcCCCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            66    44           77777777777766532111                       44455444  45667777


Q ss_pred             HHHHHHh
Q 028992          140 LHKHGIN  146 (200)
Q Consensus       140 l~~~~~~  146 (200)
                      |+..+..
T Consensus       189 Lg~~y~~  195 (490)
T 2xm6_A          189 LGYMYSR  195 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7766653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=1.9e-06  Score=76.63  Aligned_cols=117  Identities=9%  Similarity=0.036  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q 028992           12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF   91 (200)
Q Consensus        12 ~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~   91 (200)
                      ..+++|++.++++.+.  .++++++++|.++..-      ....+..++|+..|++|++.  .++++++.||.+|.... 
T Consensus       237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g------~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~-  305 (490)
T 2xm6_A          237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG------LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGA-  305 (490)
T ss_dssp             CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT------TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCB-
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC-
Confidence            3556666666666554  4566677777766651      01123348888888888765  67888888888887750 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                           ....+++++|+.+|++|++.++...                      .|+++++.  ..++++.+|+..+..
T Consensus       306 -----~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  375 (490)
T 2xm6_A          306 -----EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ  375 (490)
T ss_dssp             -----TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             -----CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence                 0011288999999999888755433                      45555555  678888888888875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.46  E-value=2.5e-06  Score=76.24  Aligned_cols=109  Identities=10%  Similarity=0.057  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccC
Q 028992           15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA   94 (200)
Q Consensus        15 e~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~   94 (200)
                      +++...++.+...+|   ++++++|.++...|..       ...++|+..|++|.+.+|....++++||.+|....    
T Consensus       162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~-------~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~----  227 (452)
T 3e4b_A          162 DDVERICKAALNTTD---ICYVELATVYQKKQQP-------EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT----  227 (452)
T ss_dssp             HHHHHHHHHHTTTCT---THHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG----
T ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCc-------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Confidence            344445555544444   4999999999987621       13399999999999999999999999999996530    


Q ss_pred             ChHHhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           95 DLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        95 ~~~~a~~~~d~A~~~fqkAl~l~P~~~------------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                         ...+++++|+.+|++|.   |++.                        .|+++.+  ...++++++|+..+.
T Consensus       228 ---~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          228 ---LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY  294 (452)
T ss_dssp             ---GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             ---CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence               12349999999999998   5553                        4555554  458999999999887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.44  E-value=4e-07  Score=77.17  Aligned_cols=90  Identities=10%  Similarity=0.023  Sum_probs=77.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC--------CC
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDA------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--------PA   74 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld--------P~   74 (200)
                      -..+.|++|++.+++++.+.|...      .++.++|.++...|++          ++|+..|++++++.        |.
T Consensus        64 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           64 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL----------QTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHhccccCcH
Confidence            356789999999999998766543      3478899999999998          99999999999985        44


Q ss_pred             CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        75 ~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ...++.++|.++...|           ++++|..++++++++.|.
T Consensus       134 ~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhhc
Confidence            5667889999999999           999999999999999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.30  E-value=4.9e-06  Score=59.92  Aligned_cols=65  Identities=14%  Similarity=0.013  Sum_probs=58.7

Q ss_pred             HHhchHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKD-------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~-------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      -+.+.|++|...++.|+...       +..++++.++|.++.++|++          ++|+..+++|++++|++..++.|
T Consensus        16 ~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A           16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHhh
Confidence            34568999999999999863       45789999999999999998          99999999999999999999888


Q ss_pred             HH
Q 028992           82 LG   83 (200)
Q Consensus        82 LG   83 (200)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.18  E-value=2.2e-05  Score=80.45  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      .++.+++|.+.+++     .+++.+|+++|.++...|++          ++||.+|++|     ++++.|..+|.++...
T Consensus      1088 ~i~nldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~----------kEAIdsYiKA-----dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAER-----CNEPAVWSQLAKAQLQKGMV----------KEAIDSYIKA-----DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred             HHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCH----------HHHHHHHHhc-----CChHHHHHHHHHHHHc
Confidence            45556666666554     57899999999999999998          9999999886     9999999999999999


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      |           +|++|+++|++|.+.+++.
T Consensus      1148 G-----------kyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1148 G-----------NWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             C-----------CHHHHHHHHHHHHhhcccc
Confidence            9           9999999999999998775

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.13  E-value=5.3e-05  Score=59.28  Aligned_cols=77  Identities=9%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHH
Q 028992           28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP-AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA  106 (200)
Q Consensus        28 ~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP-~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A  106 (200)
                      +.-.+++.++++.+|....+.       ..+.++|..|+..++-+| ..-+.+|.|+..++++|           +|++|
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~-------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-----------~Y~~A   96 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDV-------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMA   96 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-----------CHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-----------hHHHH
Confidence            367899999999999985543       445899999999999999 46699999999999999           99999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 028992          107 SECFQRAVDEEPTNEL  122 (200)
Q Consensus       107 ~~~fqkAl~l~P~~~~  122 (200)
                      ..|.+..|+.+|+|..
T Consensus        97 r~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           97 KRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             HHHHHHHHHTCCCCHH
T ss_pred             HHHHHHHHhcCCCcHH
Confidence            9999999999999963

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.04  E-value=1.2e-05  Score=57.57  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY   77 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~   77 (200)
                      .++|+..+++++++||+++.+++.+|.+++..|+|          ++||..++++++.+|.++.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y----------~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF----------QEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCcc
Confidence            57999999999999999999999999999999999          9999999999999999543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.02  E-value=3.9e-05  Score=66.86  Aligned_cols=93  Identities=13%  Similarity=0.007  Sum_probs=79.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC----CHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWS   81 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P--~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~----~~~a~~~   81 (200)
                      +...+.+++|++.+.+.+..+|  ++.+++...+.+++.+|+.          +.|...+++..+.+|+    +..++..
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~----------d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV----------STASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCccccccchHHHHH
Confidence            3557899999999999999997  8999999999999999998          9999999999999995    4566677


Q ss_pred             HHHH--HHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           82 LGNA--HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        82 LG~a--~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      |+.+  ....|         .+++.+|..+|+++.+..|+
T Consensus       180 Laea~v~l~~g---------~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          180 LAESYIKFATN---------KETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHT---------CSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHhC---------CccHHHHHHHHHHHHHhCCC
Confidence            7666  44444         45899999999999888887

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.01  E-value=4.7e-05  Score=58.91  Aligned_cols=75  Identities=9%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHH
Q 028992           29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS  107 (200)
Q Consensus        29 P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~-~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~  107 (200)
                      --.+++.++++.+|....+       ...+.++|..|++.++.+|. .-+.+|.|+..++++|           +|++|.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~-------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-----------dY~~Ar   98 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTD-------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-----------EYSMAK   98 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-----------CHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-----------hHHHHH
Confidence            3378999999999998544       34458999999999999994 5799999999999999           999999


Q ss_pred             HHHHHHHHhCCCCH
Q 028992          108 ECFQRAVDEEPTNE  121 (200)
Q Consensus       108 ~~fqkAl~l~P~~~  121 (200)
                      .|.++.++.+|+|.
T Consensus        99 ~y~d~lL~~eP~N~  112 (134)
T 3o48_A           99 RYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHTTCTTCH
T ss_pred             HHHHHHHhhCCCCH
Confidence            99999999999997

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.97  E-value=5.4e-05  Score=67.64  Aligned_cols=106  Identities=17%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             HHHhhCCCCHHHH--HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc---------
Q 028992           23 ANYAKDPLDADNL--TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF---------   91 (200)
Q Consensus        23 ~a~~~~P~d~~~l--~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~---------   91 (200)
                      ++...-|.+++++  +..|..++..+.       ...+.+|+.+|++|+++||+.+.+|-.++.+|.....         
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~-------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~  257 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGD-------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL  257 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence            4445678877766  445555554322       2345999999999999999999999988888752110         


Q ss_pred             --------------ccCChH---Hh-------hcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHH
Q 028992           92 --------------LTADLS---EA-------KGDFDKASECFQRAVDEEPTNE--------------------LYQKSL  127 (200)
Q Consensus        92 --------------l~~~~~---~a-------~~~~d~A~~~fqkAl~l~P~~~--------------------~y~kAl  127 (200)
                                    +.|..+   ++       +|++++|+.++++|++++|+..                    .|++|+
T Consensus       258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                          001111   11       6799999999999999998753                    788888


Q ss_pred             HhCCCChH
Q 028992          128 EVSTKAPE  135 (200)
Q Consensus       128 e~~~k~~e  135 (200)
                      .++|..+.
T Consensus       338 rL~P~~~t  345 (372)
T 3ly7_A          338 NLRPGANT  345 (372)
T ss_dssp             HHSCSHHH
T ss_pred             hcCCCcCh
Confidence            88887764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=2.2e-05  Score=67.26  Aligned_cols=88  Identities=5%  Similarity=-0.052  Sum_probs=70.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDAD-----------------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~-----------------~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +.+.|++|++.+..+++.+|...+                 ++.++|.+|...|++          ++|++.+++++.+.
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~----------~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK----------DKLREFIPHSTEYM   85 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHH
Confidence            456899999999999999988653                 589999999999998          99999999998886


Q ss_pred             CCCHH------HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           73 PAKHY------TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        73 P~~~~------a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      +....      ++.++|.++...|           ++++|+.++++++...+
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~  126 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPD-----------SLDDQIFVCEKSIEFAK  126 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCS-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHH
Confidence            66433      3456777777777           77778777777776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.91  E-value=5.6e-05  Score=65.90  Aligned_cols=85  Identities=9%  Similarity=-0.009  Sum_probs=68.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCC----CHHHHHHHHHH--HHHhc--CCcccccccccHHHHHHHHHHHHHhCCC--CHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPL----DADNLTRWGEA--LLELS--QFESVSDSKKIINEAISKFEEALVIDPA--KHYT   78 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~----d~~~l~~lG~a--l~~l~--~~~~~~~~~~~~~eAi~~le~AL~ldP~--~~~a   78 (200)
                      -++++++.|++.+++..+.+|+    +-.++++++.+  .+..|  ++          ++|+..|+++....|+  ....
T Consensus       147 L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~----------q~A~~~f~El~~~~p~~~~~~l  216 (310)
T 3mv2_B          147 LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA----------TSNFYYYEELSQTFPTWKTQLG  216 (310)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT----------THHHHHHHHHHTTSCSHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhCCCcccHHH
Confidence            4678999999999999999995    45667777776  44444  45          9999999999888887  4556


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhC
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE  117 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~  117 (200)
                      +++   ++..+|           ++++|...+++.++..
T Consensus       217 Lln---~~~~~g-----------~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          217 LLN---LHLQQR-----------NIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHH---HHHHHT-----------CHHHHHHHHHHHHSHH
T ss_pred             HHH---HHHHcC-----------CHHHHHHHHHHHHHhc
Confidence            666   788888           9999999999888774

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.79  E-value=9.3e-05  Score=75.88  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCC--------------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP--------------   73 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP--------------   73 (200)
                      ++.++.|++|+..|.++        ..|.++|.+|..+|++          ++|++++++|...++              
T Consensus      1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~----------q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A         1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY----------QAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred             HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH----------HHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence            45667888888888874        5888888888888887          899999988844333              


Q ss_pred             -----------CCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           74 -----------AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        74 -----------~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                                 .+++-+..++..|...|           +|++|+.++++++.++|.+.
T Consensus      1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G-----------~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1267 RLAQMCGLHIVVHADELEELINYYQDRG-----------YFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccChhHh
Confidence                       13334444555555555           99999999999999999886

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.77  E-value=6.8e-05  Score=68.49  Aligned_cols=139  Identities=14%  Similarity=0.052  Sum_probs=82.8

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +++.|++|.+.++++     +++.+|..++.++...|+|          +.|..+... |.++|   +-+..+.+.|.+.
T Consensus       160 ~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef----------~lA~~~~l~-L~~~a---d~l~~lv~~Yek~  220 (449)
T 1b89_A          160 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF----------RLAQMCGLH-IVVHA---DELEELINYYQDR  220 (449)
T ss_dssp             TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH----------HHHHHTTTT-TTTCH---HHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcH----------HHHHHHHHH-HHhCH---hhHHHHHHHHHHC
Confidence            455566666666665     3566666666666666655          555444443 22222   2233455666666


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHHhCC-----CChHHHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVST-----KAPELHMELH  141 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------------~y~kAle~~~-----k~~e~~~~l~  141 (200)
                      |           +|++|+.++++++.+++.+.                       .|.+.+.+.+     ..+.+|.++.
T Consensus       221 G-----------~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          221 G-----------YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             T-----------CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred             C-----------CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            6           99999999999999988885                       3333334444     5677777777


Q ss_pred             HHHHhccc----------cCCCCCcch--h-hhhcccccchhhhhhhHHH
Q 028992          142 KHGINQQT----------LGGGSSASS--A-QSSKKKSSDLKYDIFGWAI  178 (200)
Q Consensus       142 ~~~~~~~~----------~~~~~~~~~--~-~~~~~~~~~~~y~~~g~~~  178 (200)
                      -.+...+.          ..+++=.+.  | ..-+..++|+-|-...+.+
T Consensus       290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl  339 (449)
T 1b89_A          290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL  339 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence            66654432          122223333  2 3445688999888777765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.75  E-value=6.4e-05  Score=59.26  Aligned_cols=63  Identities=11%  Similarity=-0.005  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKD-P-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~-P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      .+++++..++..++.+ | ++.++++++|.++.+++++          ++|+.+++++|+++|++..+....-.+
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y----------~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            6779999999999999 8 6799999999999999998          999999999999999999987654443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.74  E-value=6.4e-05  Score=64.36  Aligned_cols=85  Identities=8%  Similarity=0.013  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCHHHHH
Q 028992           13 LSEHNRKTAEANYAK------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKHYTLW   80 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~~a~~   80 (200)
                      .++.|.+.++.++..      .+.-+.++.++|.++...|++          ++|+..+++++..      .|...+++.
T Consensus       110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~~~~~~~  179 (434)
T 4b4t_Q          110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY----------KDSLALINDLLREFKKLDDKPSLVDVHL  179 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSSCSTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh----------HHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            466677766666653      344578899999999999998          9999999999987      555678999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      ++|.+|..+|           +|++|..++++++...+
T Consensus       180 ~~~~~~~~~~-----------~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          180 LESKVYHKLR-----------NLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-----------cHHHHHHHHHHHHHHhh
Confidence            9999999999           99999999999998753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.56  E-value=0.00011  Score=67.35  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=71.9

Q ss_pred             HHHhchHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh-----CCC
Q 028992            8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPA   74 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~--------~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l-----dP~   74 (200)
                      +..++.|++|+..+++++++        +|+-+..++++|.+|..+|++          ++|+..|++|++|     -|+
T Consensus       361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~----------~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI----------EVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHHhCCC
Confidence            45678999999999999864        344555789999999999998          9999999999986     788


Q ss_pred             CHHHH---HHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHH
Q 028992           75 KHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD  115 (200)
Q Consensus        75 ~~~a~---~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~  115 (200)
                      +|++-   -+|+.++..++           .|++|...|+++.+
T Consensus       431 Hp~~~~~~~~l~~~~~e~~-----------~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELR-----------MFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            87654   57888888877           89999999999854

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.51  E-value=0.00061  Score=64.89  Aligned_cols=112  Identities=13%  Similarity=-0.004  Sum_probs=87.5

Q ss_pred             HhchHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAK-DPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~-~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      |.+..+.||+.+++|++. .+....++..++..-...++ .          +.|...|+++++..|+++..+...+....
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~----------e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT----------KTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            566788999999999988 55567777766665544433 5          89999999999999999998878888777


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCC--CH----------------------HHHHHHHhCCCChHHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE----------------------LYQKSLEVSTKAPELHMELHK  142 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~--~~----------------------~y~kAle~~~k~~e~~~~l~~  142 (200)
                      ..|           +.+.|...|++|+...|+  ..                      .++++++..|+.+.+-.=..+
T Consensus       516 ~~~-----------~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r  583 (679)
T 4e6h_A          516 YVN-----------EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNK  583 (679)
T ss_dssp             HHT-----------CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             hCC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            777           999999999999998884  21                      677888888887765544443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.49  E-value=9.7e-05  Score=67.48  Aligned_cols=70  Identities=14%  Similarity=0.069  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------  121 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~-----------------  121 (200)
                      ++|++++++|     +++.+|-.++.++...|           +|+.|..|... |..+|++.                 
T Consensus       165 q~AVea~~KA-----~~~~~Wk~v~~aCv~~~-----------ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          165 QAAVDGARKA-----NSTRTWKEVCFACVDGK-----------EFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             HHHHHHHHHH-----TCHHHHHHHHHHHHHTT-----------CHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHc-----CCchhHHHHHHHHHHcC-----------cHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            6666666666     35566666666666665           66666555553 33444432                 


Q ss_pred             -HHHHHHHhCCCChHHHHHHHHHHH
Q 028992          122 -LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus       122 -~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                       .++++|.+.+..-..+.+|+..+.
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHH
Confidence             666777777777777777776554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.45  E-value=0.0012  Score=62.98  Aligned_cols=82  Identities=7%  Similarity=-0.061  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI-SKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi-~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .+..+..|++++...|.+++.|+..+..+...++.          ++|+ ..|++|+...|++...|..++......|  
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~----------~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~--  392 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD----------STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT--  392 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC----------TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Confidence            34456789999999999999999999999888776          8897 9999999999999988888999999988  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHh
Q 028992           93 TADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                               ++++|...|++++..
T Consensus       393 ---------~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          393 ---------KIPEIETTILSCIDR  407 (679)
T ss_dssp             ---------CHHHHHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHH
Confidence                     999999999999975

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.15  E-value=0.00049  Score=62.09  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             cccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992           55 KKIINEAISKFEEALVI-----DPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS  126 (200)
Q Consensus        55 ~~~~~eAi~~le~AL~l-----dP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kA  126 (200)
                      .+.+++|+..|+++|++     .|++++   ++.+||.+|..+|           +|++|+.++++++++      +++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-----------~~~eA~~~~~~aL~i------~~~~  373 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-----------DWEGALKYGQKIIKP------YSKH  373 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH------HHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHH------HHHH
Confidence            35679999999999986     677765   5679999999999           999999999999975      2222


Q ss_pred             HH-hCCCChHHHHHHHHHHHhcc
Q 028992          127 LE-VSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       127 le-~~~k~~e~~~~l~~~~~~~~  148 (200)
                      +- -.|.-...+.||+..+..|+
T Consensus       374 lG~~Hp~~a~~l~nLa~~~~~qg  396 (433)
T 3qww_A          374 YPVYSLNVASMWLKLGRLYMGLE  396 (433)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCChHHHHHHHHHHHHHHhcc
Confidence            21 11223344566666666555

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.76  E-value=0.03  Score=50.72  Aligned_cols=120  Identities=11%  Similarity=0.057  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------
Q 028992           14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-------   86 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~-------   86 (200)
                      .+..+..|++++...|.+++.|+..+.-+...|+.          ++|...|++|+.. |.+...+...+...       
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~----------~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~  263 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK----------EKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG  263 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence            44567899999999999999999999998887776          9999999999999 99877665544431       


Q ss_pred             ---Hhc--Cc-----c--cCChH----------HhhcCHHHHHHHHHHHHHhCCCC-H----------------------
Q 028992           87 ---TSC--GF-----L--TADLS----------EAKGDFDKASECFQRAVDEEPTN-E----------------------  121 (200)
Q Consensus        87 ---~~~--G~-----l--~~~~~----------~a~~~~d~A~~~fqkAl~l~P~~-~----------------------  121 (200)
                         ...  +.     +  .+...          .-.++.+.|...|++| . .|.. .                      
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~  341 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYN  341 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence               000  00     0  00000          0134688899999999 3 3432 1                      


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHh
Q 028992          122 LYQKSLEVSTKAPELHMELHKHGIN  146 (200)
Q Consensus       122 ~y~kAle~~~k~~e~~~~l~~~~~~  146 (200)
                      .|+++++..|+.|+++..+......
T Consensus       342 ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          342 IFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            5667777778888887776654443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.72  E-value=0.0028  Score=56.86  Aligned_cols=50  Identities=12%  Similarity=0.047  Sum_probs=43.0

Q ss_pred             ccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           56 KIINEAISKFEEALVI-----DPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        56 ~~~~eAi~~le~AL~l-----dP~~~~---a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      +.+++|++.++++|++     .|++++   ++.+||.+|..+|           +|++|+.+++++++.
T Consensus       301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-----------~~~eA~~~~~~~L~i  358 (429)
T 3qwp_A          301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-----------LLEEALFYGTRTMEP  358 (429)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHh
Confidence            3459999999999976     566664   6788999999988           999999999999976

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.61  E-value=0.01  Score=47.40  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=64.1

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh---CCCC--
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDA---------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPAK--   75 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~---------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l---dP~~--   75 (200)
                      ..+.|+.|+-.+..++....+++         +++..+|.+++..++|          ..|...|++||.+   -|+.  
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey----------rrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY----------RNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHCC-----
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHHHHHHhcCCC
Confidence            34578888888888665544444         4889999999999999          9999999998755   1222  


Q ss_pred             --------------------HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           76 --------------------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        76 --------------------~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                                          .+..|.++.||..++           ++++|+...+.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~-----------~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK-----------QDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHC-----------CHHHHHHHHhc
Confidence                                278899999999999           99999998664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.16  E-value=0.011  Score=45.03  Aligned_cols=60  Identities=12%  Similarity=0.031  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992           15 EHNRKTAEANYAKD-P-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus        15 e~A~~~~e~a~~~~-P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      .+++..++..+..+ | ..-++++.+|..+.++++|          ++|+.+++..|+++|++..|.-....
T Consensus        55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y----------~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY----------EKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45777888888877 5 6789999999999999999          99999999999999999997654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.87  E-value=0.03  Score=43.09  Aligned_cols=62  Identities=8%  Similarity=-0.042  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992           14 SEHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus        14 fe~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      ..+++..++..+..+| ..-++++.+|..+.++|++          ++|..+.+..|+++|++..|.-....+
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY----------~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            3467888899999999 4689999999999999999          999999999999999999976544433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.83  E-value=0.071  Score=48.25  Aligned_cols=82  Identities=13%  Similarity=-0.009  Sum_probs=65.5

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      |.+..+.||+.++++ ...+....++..++..-...++ .          +.|...|+.+++.-|+.++.++..+.....
T Consensus       298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~----------~~ar~ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR----------ATPYNIFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            456789999999999 4333466777666665555553 5          999999999999999999988888777777


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      +|           +.+.|...|+++
T Consensus       367 ~~-----------~~~~aR~l~er~  380 (493)
T 2uy1_A          367 IG-----------DEENARALFKRL  380 (493)
T ss_dssp             HT-----------CHHHHHHHHHHS
T ss_pred             cC-----------CHHHHHHHHHHH
Confidence            77           999999998887

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.69  E-value=0.044  Score=50.39  Aligned_cols=54  Identities=17%  Similarity=0.089  Sum_probs=49.7

Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        57 ~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ++..|...|++|+.++|++...|..||.+....|           +.-+|+-+|-|++....-++
T Consensus       167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-----------~~l~a~y~y~rsl~~~~Pf~  220 (497)
T 1ya0_A          167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-----------DHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHSSSBCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-----------ccHHHHHHHHHHHhcCCCCh
Confidence            3489999999999999999999999999999988           99999999999998776676

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.61  E-value=0.016  Score=46.20  Aligned_cols=63  Identities=8%  Similarity=0.011  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCcccCChHHhhcCHH
Q 028992           34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---------TLWSLGNAHTSCGFLTADLSEAKGDFD  104 (200)
Q Consensus        34 ~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~---------a~~~LG~a~~~~G~l~~~~~~a~~~~d  104 (200)
                      ++..+...++..+.|          +.|+.....++.+..++++         ++.++|.+++..|           +|.
T Consensus        22 ~l~dqik~L~d~~LY----------~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~-----------eyr   80 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLH----------SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK-----------EYR   80 (167)
T ss_dssp             CHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT-----------CHH
T ss_pred             HHHHHHHHHHHhhhH----------HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc-----------HHH
Confidence            455666677776666          9999988887776544444         8899999999988           999


Q ss_pred             HHHHHHHHHHHhC
Q 028992          105 KASECFQRAVDEE  117 (200)
Q Consensus       105 ~A~~~fqkAl~l~  117 (200)
                      .|..+|++||.+.
T Consensus        81 rA~~~y~qALq~~   93 (167)
T 3ffl_A           81 NAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.58  E-value=0.051  Score=42.30  Aligned_cols=59  Identities=8%  Similarity=-0.033  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           15 EHNRKTAEANYAKDP-LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG   83 (200)
Q Consensus        15 e~A~~~~e~a~~~~P-~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG   83 (200)
                      .+++..++..+..+| ..-++++.++..+.+++++          ++|..+.+..|+++|++..+.-...
T Consensus        59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y----------~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH----------HHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            467788888888888 5788999999999999999          9999999999999999999765443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.39  E-value=0.062  Score=45.96  Aligned_cols=61  Identities=18%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Q 028992           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSL  127 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----~y~kAl  127 (200)
                      +.+++|++.++..++-+|.|.+..+.|-..++..|           +++.|.+-++-+.+++|+..    .||.++
T Consensus        11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-----------~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI   75 (273)
T 1zbp_A           11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-----------DFERADEQLMQSIKLFPEYLPGASQLRHLV   75 (273)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence            34599999999999999999999999999999988           99999999999999999997    666665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.18  E-value=0.23  Score=43.56  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH--
Q 028992           36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA--  113 (200)
Q Consensus        36 ~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA--  113 (200)
                      ..++.+++..|++          .+|+..+++++..+|-+-.+|..|-.+|...|           +..+|+..|+++  
T Consensus       175 ~~~~~~~l~~g~~----------~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G-----------r~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIACGRA----------SAVIAELEALTFEHPYREPLWTQLITAYYLSD-----------RQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence            3455556666666          99999999999999999999999999999999           888888777775  


Q ss_pred             -----HHhCCCCH---HHHHHHHhCCCChH-----HHHHHHHHHH
Q 028992          114 -----VDEEPTNE---LYQKSLEVSTKAPE-----LHMELHKHGI  145 (200)
Q Consensus       114 -----l~l~P~~~---~y~kAle~~~k~~e-----~~~~l~~~~~  145 (200)
                           +.++|.-+   .|+..+.-.|..+.     ....+...+.
T Consensus       234 ~L~~eLG~~P~~~l~~l~~~il~~~~~~~~~~~~~~l~~i~~~L~  278 (388)
T 2ff4_A          234 TLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLD  278 (388)
T ss_dssp             HHHHHHSCCCCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHcCCCCCCCCCCccccchhhhHhh
Confidence                 34578776   67777766655544     3444444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.06  E-value=0.75  Score=36.25  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDA--------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN   84 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~--------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~   84 (200)
                      ..++-++.|++++..-|.+.        -.|.+.+.- .++++.          ++|...|+.|+.+.-+.+-+|...+.
T Consensus        34 ~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~----------d~aR~vy~~a~~~hKkFAKiwi~~Aq  102 (161)
T 4h7y_A           34 LLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEP----------DDARDYFQMARANCKKFAFVHISFAQ  102 (161)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCG----------GGCHHHHHHHHHHCTTBHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCH----------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34777889999998877642        244444432 344444          89999999999997777666666666


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                      --.++|           ++++|.+.+.+|+...|..
T Consensus       103 FEiRqg-----------nl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A          103 FELSQG-----------NVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHcc-----------cHHHHHHHHHHHhccCCCc
Confidence            667788           9999999999999977754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.05  E-value=0.64  Score=39.62  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=76.8

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA-H--   86 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a-~--   86 (200)
                      +-+.+.+|++..+..++.+|.|++....+-..|+-.|++          +.|...++-+.+++|+....-..+-.+ .  
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w----------~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE   78 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQLRHLVKAA   78 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence            445789999999999999999999999999999999998          999999999999999977653332222 1  


Q ss_pred             -Hh----cCcccCCh----------------HHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           87 -TS----CGFLTADL----------------SEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        87 -~~----~G~l~~~~----------------~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                       ..    .|--+|..                ..+.|+.++|...-.+|++..|..
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence             11    12112222                245678888888888888887754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.58  E-value=1  Score=43.38  Aligned_cols=48  Identities=10%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        55 ~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      ++.++-|+.+-++|..+-|.....|+.|+.+|..+|           +|+.|+-.+.-+
T Consensus       350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-----------d~e~ALLtLNSc  397 (754)
T 4gns_B          350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-----------EYEKALFAINSM  397 (754)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-----------cHHHHHHHHhcC
Confidence            556699999999999999999999999999999999           999999755443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.47  E-value=0.65  Score=42.62  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHhcCcccCCh--
Q 028992           27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA--------LVIDPAKHYTLWSLGNAHTSCGFLTADL--   96 (200)
Q Consensus        27 ~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A--------L~ldP~~~~a~~~LG~a~~~~G~l~~~~--   96 (200)
                      ...++...|.++|...+..+++          +.|+.+|.++        |.....+.+-+-.++......|.+..-.  
T Consensus       676 ~~~~~~~~W~~la~~al~~~~~----------~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~  745 (814)
T 3mkq_A          676 TDESAEMKWRALGDASLQRFNF----------KLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA  745 (814)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhCcHhHHHHHHHHHHHcCCH----------HHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            4567899999999999999998          8999988875        2223555565555655555554100000  


Q ss_pred             HHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCC---hHHHHHHHHHHHh
Q 028992           97 SEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKA---PELHMELHKHGIN  146 (200)
Q Consensus        97 ~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~---~e~~~~l~~~~~~  146 (200)
                      .--.|++++|+++|.+.-+.   +..+.-|-...|..   +++...+..++..
T Consensus       746 ~~~~g~~~~a~~~~~~~~~~---~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~  795 (814)
T 3mkq_A          746 YWIAGDIQGAKDLLIKSQRF---SEAAFLGSTYGLGDNEVNDIVTKWKENLIL  795 (814)
T ss_dssp             HHHHTCHHHHHHHHHHTTCH---HHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHcCCh---HHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence            00013666666665552221   23444444444333   4555555555543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.42  E-value=1.5  Score=35.77  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHH--Hh---------------CCCCHHHHH-HHHHHHHhcCc
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL--VI---------------DPAKHYTLW-SLGNAHTSCGF   91 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL--~l---------------dP~~~~a~~-~LG~a~~~~G~   91 (200)
                      +..+..+--..|+..+.+          +..|+.+++..|  ++               ||.+-+-++ .+|.+++..| 
T Consensus        60 NT~Ts~YYk~LCy~klKd----------YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g-  128 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKD----------YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG-  128 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT-
T ss_pred             chHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc-
Confidence            344444555555555444          499999999999  33               456766665 4888999999 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                                +-++|+.+|.+....+|-....+--+
T Consensus       129 ----------~r~EaI~y~~~Sf~~~~lf~~vEnli  154 (242)
T 3kae_A          129 ----------YREEGIGHYVRSFGKSFLFSPVENLL  154 (242)
T ss_dssp             ----------CHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ----------CHHHhhhHhhhhcCCccccchHHHHH
Confidence                      99999999999999999888666333

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.48  E-value=0.7  Score=42.35  Aligned_cols=66  Identities=6%  Similarity=-0.049  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .++.|+..|.+|..++|++...++.+|.+....+++          -+|+..|-++|....-.+.+.-||...+-.
T Consensus       167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~----------l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH----------LTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH----------HHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc----------HHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            467999999999999999999999999999988887          899999999999888899999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.42  E-value=5.2  Score=36.05  Aligned_cols=89  Identities=12%  Similarity=0.022  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Q 028992           13 LSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~a~~~~   89 (200)
                      .+++|.+.+++-.... +-|..+++.+-.++...|+.          ++|++.|++..+.  .| +..+|..|=.+|...
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~  153 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDP----------EMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRK  153 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCC-ccceehHHHHHHHHC
Confidence            3566666666654433 22666777777777777776          7777777766553  33 345566666667776


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHh--CCCCHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDE--EPTNELY  123 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l--~P~~~~y  123 (200)
                      |           ++++|.+.|++..+.  .|+...|
T Consensus       154 g-----------~~~~A~~l~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          154 G-----------DADKAYEVDAHMVESEVVPEEPEL  178 (501)
T ss_dssp             T-----------CHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             C-----------CHHHHHHHHHHHHhcCCCCCHHHH
Confidence            6           777777777766643  4555533

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.38  E-value=7.6  Score=33.86  Aligned_cols=124  Identities=9%  Similarity=-0.052  Sum_probs=84.4

Q ss_pred             CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHH----------------H
Q 028992            3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKF----------------E   66 (200)
Q Consensus         3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~l----------------e   66 (200)
                      |+.++.+|..+..+|++...+.=...-.|++.|..+|..|.+-+++          .+|..+|                +
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~----------~~Ae~H~ilg~~~s~~~~a~mL~e  176 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF----------EAAEKHLVLGTKESPEVLARMEYE  176 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHhcCCchHHHHHHHHHH
Confidence            6778889999999999998773233446999999999999997766          3333333                1


Q ss_pred             HHHHhCCCCHHHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHHH----hCCC------------------CH--
Q 028992           67 EALVIDPAKHYTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPT------------------NE--  121 (200)
Q Consensus        67 ~AL~ldP~~~~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~----l~P~------------------~~--  121 (200)
                      -..+-+|...+.+...+.. |...+           +...|..+|+.-++    .+|.                  .+  
T Consensus       177 w~~~~~~~e~dlfiaRaVL~yL~l~-----------n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL  245 (336)
T 3lpz_A          177 WYKQDESHTAPLYCARAVLPYLLVA-----------NVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL  245 (336)
T ss_dssp             HHHTSCGGGHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH
Confidence            1223356677777777775 45666           88888775544332    3342                  33  


Q ss_pred             -----------------------HHHHHHHhCC-CChHHHHHHHHHHHhc
Q 028992          122 -----------------------LYQKSLEVST-KAPELHMELHKHGINQ  147 (200)
Q Consensus       122 -----------------------~y~kAle~~~-k~~e~~~~l~~~~~~~  147 (200)
                                             .|...|+.+| ...+.-..|+..+++-
T Consensus       246 NFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          246 NFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence                                   5666666666 6677777777777754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.36  E-value=3.7  Score=37.03  Aligned_cols=98  Identities=11%  Similarity=-0.067  Sum_probs=77.9

Q ss_pred             HHHhchHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGN   84 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~-P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l--dP~~~~a~~~LG~   84 (200)
                      +-|.+.+++|.+.++.-.+.. .-|..+++.+=.+|.+.|+.          ++|.+.|++-.+.  .| +..+|..|-.
T Consensus       115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~~G~~P-d~~ty~~Li~  183 (501)
T 4g26_A          115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA----------DKAYEVDAHMVESEVVP-EEPELAALLK  183 (501)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence            456778999999998877653 33778888888899988887          9999999988765  34 4567888889


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHH--hCCCCHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVD--EEPTNELYQKSL  127 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~--l~P~~~~y~kAl  127 (200)
                      +|...|           ++++|.+.|++.-+  ..|+...|..-.
T Consensus       184 ~~~~~g-----------~~d~A~~ll~~Mr~~g~~ps~~T~~~l~  217 (501)
T 4g26_A          184 VSMDTK-----------NADKVYKTLQRLRDLVRQVSKSTFDMIE  217 (501)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred             HHhhCC-----------CHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence            999988           99999999998765  468877665443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.29  E-value=2.6  Score=33.51  Aligned_cols=43  Identities=12%  Similarity=-0.065  Sum_probs=34.9

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA   68 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A   68 (200)
                      ++.++.|.+.++..     ++...|.++|.+-+..|++          +-|+.||+++
T Consensus        18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~----------~lAe~cy~~~   60 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNA----------SLAEMIYQTQ   60 (177)
T ss_dssp             TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCh----------HHHHHHHHHh
Confidence            45778887777654     7899999999999999998          7777777764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.55  E-value=1.4  Score=34.74  Aligned_cols=63  Identities=10%  Similarity=-0.003  Sum_probs=52.4

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL   79 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~   79 (200)
                      .++.+...++||..|+.++..+...+.+|...+.--++.|+.          ..|...+.+|+.+.|+..+.+
T Consensus        69 ~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl----------~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           69 ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV----------KKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH----------HHHHHHHHHHhccCCCcHHHH
Confidence            345566778899999999999999988887777766666666          999999999999999988765

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.53  E-value=1.9  Score=37.17  Aligned_cols=91  Identities=14%  Similarity=-0.096  Sum_probs=64.2

Q ss_pred             CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH---------------
Q 028992            3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE---------------   67 (200)
Q Consensus         3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~---------------   67 (200)
                      |+.++.+|..+..+|++...+.=...-.|++.|..+|..|.+-+++          .+|..+|-.               
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~----------~~A~~H~i~~~~~s~~~~a~~l~~  174 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV----------YEAERYFMLGTHDSMIKYVDLLWD  174 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH----------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHhCCCccHHHHHHHHHH
Confidence            5777888999999999988765333346999999999999997776          555554421               


Q ss_pred             -HHH---hCCCCHHHHHHHHHH-HHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           68 -ALV---IDPAKHYTLWSLGNA-HTSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        68 -AL~---ldP~~~~a~~~LG~a-~~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                       .-+   -+|...+.+...+.. |...|           +...|...|+.-.
T Consensus       175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~-----------n~~~A~~~~~~f~  215 (312)
T 2wpv_A          175 WLCQVDDIEDSTVAEFFSRLVFNYLFIS-----------NISFAHESKDIFL  215 (312)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHTT-----------BHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHH
Confidence             112   345556666666664 45666           8888888877654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.24  E-value=1.3  Score=42.70  Aligned_cols=48  Identities=4%  Similarity=-0.058  Sum_probs=42.4

Q ss_pred             hchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHH
Q 028992           11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA   68 (200)
Q Consensus        11 l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~A   68 (200)
                      .+.|+-|++.++++...-|.+-..|++|+.+|..+++|          +.|+-.+.-+
T Consensus       350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~----------e~ALLtLNSc  397 (754)
T 4gns_B          350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY----------EKALFAINSM  397 (754)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH----------HHHHHHHhcC
Confidence            35789999999999999999999999999999999999          7777655543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.66  E-value=3.6  Score=37.59  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHH
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA  113 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkA  113 (200)
                      ++|.+..+     ..++...|-.||..+...|           +++.|+.||+++
T Consensus       669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~-----------~~~~A~~~y~~~  707 (814)
T 3mkq_A          669 TLARDLLT-----DESAEMKWRALGDASLQRF-----------NFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHH-----hhCcHhHHHHHHHHHHHcC-----------CHHHHHHHHHHc
Confidence            66665432     3467788889999999988           999999999997

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=81.74  E-value=3.8  Score=32.51  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        59 ~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      +.|.+..++.     ++...|-.||.+-+.+|           +++-|..||+++=+.
T Consensus        22 ~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~g-----------n~~lAe~cy~~~~D~   63 (177)
T 3mkq_B           22 DAALDEAKKL-----NDSITWERLIQEALAQG-----------NASLAEMIYQTQHSF   63 (177)
T ss_dssp             HHHHHHHHHH-----CCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHh-----CCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHhCCH
Confidence            8898887664     67788889999999999           999999999986444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	4e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.001

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.2 bits (149), Expect = 4e-13
 Identities = 83/141 (58%), Positives = 109/141 (77%)

Query: 5   QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISK 64
           +++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+K
Sbjct: 4   ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 63

Query: 65  FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124
           FEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y 
Sbjct: 64  FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123

Query: 125 KSLEVSTKAPELHMELHKHGI 145
           KSLE++ KAP+LH E +K G+
Sbjct: 124 KSLEMTAKAPQLHAEAYKQGL 144

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 21/92 (22%)

Query: 29  PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88
           P  AD+L        E    E          EA+  + +AL + P       +L +    
Sbjct: 302 PTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFAAAHSNLASVL-- 349

Query: 89  CGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120
                    + +G   +A   ++ A+   PT 
Sbjct: 350 ---------QQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 11/62 (17%)

Query: 59  NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
             A     +    +P     L  L + H                 D+++     A+ + P
Sbjct: 16  EAAERHCMQLWRQEPDNTGVLLLLSSIH-----------FQCRRLDRSAHFSTLAIKQNP 64

Query: 119 TN 120
             
Sbjct: 65  LL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 33/122 (27%)

Query: 22  EANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81
               +  P  A           E    +           AI  +  A+ + P       +
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLID----------LAIDTYRRAIELQPHFPDAYCN 276

Query: 82  LGNAHTSCG-----------------------FLTADLSEAKGDFDKASECFQRAVDEEP 118
           L NA    G                          A++   +G+ ++A   +++A++  P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 119 TN 120
             
Sbjct: 337 EF 338

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 7/74 (9%), Positives = 16/74 (21%), Gaps = 12/74 (16%)

Query: 52  SDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHTSCGFLTADLSEAKGDFDKASECF 110
           S         +    +      ++    L+ L                  G++  A    
Sbjct: 48  STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-----------KLGEYSMAKRYV 96

Query: 111 QRAVDEEPTNELYQ 124
               + E  N+   
Sbjct: 97  DTLFEHERNNKQVG 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.96
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.54
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.5
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.01
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.78
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.46
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.01
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.63
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.41
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.94

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=6.1e-30  Score=197.78  Aligned_cols=144  Identities=58%  Similarity=0.921  Sum_probs=138.4

Q ss_pred             CCCChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH
Q 028992            1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW   80 (200)
Q Consensus         1 ~~~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~   80 (200)
                      ||. .++++|+.+|++|++.++++++++|++++++++||.+|..++++..+.+.++++++|+..|++|+++||+++++|+
T Consensus         1 ~d~-~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           1 MDT-ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             CSC-CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCh-hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            555 6789999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992           81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        81 ~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      ++|++|..+|+++++...+.++|++|+++|++|++++|++..|+++|++..++|++|.++.++++
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999987765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-17  Score=122.69  Aligned_cols=101  Identities=11%  Similarity=0.083  Sum_probs=95.1

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+=+.+.|++|+..+.++++.+|+++.+++++|.++..++++          ++|+..|+++++++|+++.+|+++|.++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY----------QKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccc----------cccchhhhhHHHhccchhhHHHHHHHHH
Confidence            455678999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      ..+|           ++++|+.+|+++++++|++..+...+.
T Consensus        82 ~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          82 EFLN-----------RFEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999           999999999999999999987766653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.1e-17  Score=132.24  Aligned_cols=93  Identities=22%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.+++|++.+++++.++|+++++++++|.++..+|++          ++|+..|++|++++|+++++++++|.+|.
T Consensus        47 y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHH----------HHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence            57889999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           ++++|+.+|+++++.+|++.
T Consensus       117 ~~g-----------~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         117 YGG-----------RDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHh-----------hHHHHHHHHHHHHhhccccH
Confidence            999           99999999999999999987

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=122.55  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      ++=+.+.|++|+..++++++++|+++..|+++|.+++.+|++          ++|+..|++||+++|++..+|+.+|.++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY----------GYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcccc----------chHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            456788999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ..+|           ++++|+.+|++++.++|++......+
T Consensus        89 ~~~g-----------~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          89 MALG-----------KFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999           99999999999999999998554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.4e-17  Score=126.87  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=89.6

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+=+.+.|++|++.|+++++++|+++.+|+++|.+|..+|++          ++|+..|++|++++|++..+|+++|.+|
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~----------~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP----------EQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhh----------hhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            455778999999999999999999999999999999999999          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..+|           +|++|+.+|++|++++|++.
T Consensus        83 ~~l~-----------~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEME-----------SYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCC-----------CHHHHHHHHHHHHHhCcccH
Confidence            9999           99999999999999998654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-16  Score=129.03  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      +.+.|++|++.++++...+|.++..+.++|.++...+++          ++|+..|+++++++|+++++++++|.++...
T Consensus       215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T d1w3ba_         215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI----------DLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            345556666666666666666666666666666665555          6666666666666666666666666666665


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      |           ++++|+.+|++++...|.+.                     .|+++++++|+.+++|.+++..+..+
T Consensus       285 ~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         285 G-----------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             S-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             C-----------CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            5           66666666666666666554                     55555556666666666666655543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=135.57  Aligned_cols=119  Identities=11%  Similarity=0.001  Sum_probs=109.2

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~-~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      +.+...+++|++.+++++++||++.++|.++|.++..+++ +          ++|+..++++++++|++..+|+++|.++
T Consensus        53 ~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~----------~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL----------HEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCH----------HHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            4466788999999999999999999999999999998875 5          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      ..+|           ++++|+.+|+++++++|++.                     .|+++|+++|....+|.+++..+.
T Consensus       123 ~~l~-----------~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         123 EWLR-----------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             Hhhc-----------cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            9988           99999999999999999996                     888999999999999999998776


Q ss_pred             hc
Q 028992          146 NQ  147 (200)
Q Consensus       146 ~~  147 (200)
                      ..
T Consensus       192 ~~  193 (315)
T d2h6fa1         192 NT  193 (315)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=118.71  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=89.2

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGN   84 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~--~~a~~~LG~   84 (200)
                      .+-.+..|++|.+.|++++.++|+++++++++|.+|+..++.       +.+++||..|+++++++|++  .+++++||.
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~-------~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-------DDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            344566899999999999999999999999999999864432       23478999999999999876  469999999


Q ss_pred             HHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        85 a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      +|..+|           +|++|+.+|+++++++|+|...+..+
T Consensus        81 ~y~~~g-----------~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          81 GNYRLK-----------EYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHh-----------hhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            999999           99999999999999999998655444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.1e-15  Score=126.73  Aligned_cols=116  Identities=9%  Similarity=-0.032  Sum_probs=108.0

Q ss_pred             HHhc-hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~-~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ..++ .+++|++.++++++++|++.++|+++|.++..+|++          ++|+..|++++++||++..+|.++|.++.
T Consensus        88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~----------~eAl~~~~kal~~dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----------SQELEFIADILNQDAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH----------HHHHHHHhhhhhhhhcchHHHHHHHHHHH
Confidence            4555 489999999999999999999999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHhCCCChHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHMEL  140 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------------~y~kAle~~~k~~e~~~~l  140 (200)
                      .+|           ++++|+++|+++++++|++.                           .|.++++++|+.+.++.++
T Consensus       158 ~~~-----------~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l  226 (315)
T d2h6fa1         158 EFK-----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL  226 (315)
T ss_dssp             HHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHH-----------hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHH
Confidence            988           99999999999999999985                           5667889999999999999


Q ss_pred             HHHHH
Q 028992          141 HKHGI  145 (200)
Q Consensus       141 ~~~~~  145 (200)
                      +..+.
T Consensus       227 ~~ll~  231 (315)
T d2h6fa1         227 KGILQ  231 (315)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.6e-15  Score=120.36  Aligned_cols=73  Identities=21%  Similarity=0.093  Sum_probs=69.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +-+.+.|++|++.++++++.+|+++++|.++|.++..+|++          ++|+..|++|++++|++..++.++|.+|.
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE----------LLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHhhhcccccccccccccccccc
Confidence            34677999999999999999999999999999999999998          99999999999999999999999999999


Q ss_pred             hcC
Q 028992           88 SCG   90 (200)
Q Consensus        88 ~~G   90 (200)
                      ..|
T Consensus        99 ~~~  101 (323)
T d1fcha_          99 NES  101 (323)
T ss_dssp             HTT
T ss_pred             ccc
Confidence            988

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-15  Score=122.63  Aligned_cols=118  Identities=18%  Similarity=0.191  Sum_probs=89.1

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+++.+++|++.++++++++|++++++.++|.++...+++          ++|++.|++++...|.+..+++.+|.++..
T Consensus       248 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV----------AEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            4556777777777777777777777777777777777776          777777777777777777777777777777


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHHhc
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ  147 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~~~  147 (200)
                      .|           ++++|+.+|+++++++|++.                     .|+++++++|+.+++|.+||+.+..+
T Consensus       318 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         318 QG-----------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TT-----------CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            77           77777777777777777775                     67777777777777777777776543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.60  E-value=2.9e-15  Score=109.22  Aligned_cols=87  Identities=18%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+.+.+.|++|+..++++++++|++++++.++|.++..++++          ++|+..|++|++++|++++++++||.+|
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD----------GLAIIALNHARMLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhH----------HHhhcccccccccccccccchHHHHHHH
Confidence            356778999999999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                      ..+|           ++++|+++|+|.|
T Consensus        95 ~~~g-----------~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 TNEH-----------NANAALASLRAWL  111 (112)
T ss_dssp             HHHH-----------HHHHHHHHHHHHH
T ss_pred             HHCC-----------CHHHHHHHHHHHh
Confidence            9988           9999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.1e-15  Score=117.24  Aligned_cols=110  Identities=25%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992           13 LSEHNRKTAEANYAK----DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~----~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .++.++..+++.+..    +|..+++++++|.++..+|++          ++|+..|++||+++|+++.+|+++|.+|..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHhhccCCCCHHHHhhhchHHHH
Confidence            456777777777765    445677999999999999999          999999999999999999999999999999


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      +|           ++++|+.+|+++++++|++.                     .|+++++++|+.+..+..++..
T Consensus        84 ~g-----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_          84 AG-----------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             TT-----------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HH-----------HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            99           99999999999999999986                     8889999999998877766643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.5e-15  Score=110.46  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH   86 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~   86 (200)
                      .+=+.+.|++|++.|+++++++|+++.++.++|.++..++++          ++|+..|++|++++|+++.++..+|.+|
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY----------NKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch----------HHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            455678999999999999999999999999999999999999          9999999999999999987666666655


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY  123 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y  123 (200)
                      ..+|    +...+.++|++|+.+|++++..+|+....
T Consensus        83 ~~lg----~~~~~~~~~~~A~~~~~kal~~~~~~~~~  115 (128)
T d1elra_          83 ARIG----NSYFKEEKYKDAIHFYNKSLAEHRTPDVL  115 (128)
T ss_dssp             HHHH----HHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHH----HHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Confidence            5555    44455559999999999999999876543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=118.91  Aligned_cols=93  Identities=19%  Similarity=0.196  Sum_probs=61.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+++.+++|+..+++++..+|+++++++++|.++..+|++          ++|+..|+++++++|+++++|++||.+|..
T Consensus       183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS----------EEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccccccccccccchhhhhhcccccccc----------hhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666666666          666666666666666666666666666666


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL  122 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~  122 (200)
                      .|           ++++|+.+|++||+++|++..
T Consensus       253 ~g-----------~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         253 LG-----------AHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HT-----------CHHHHHHHHHHHHHHHHTC--
T ss_pred             CC-----------CHHHHHHHHHHHHHhCCcChh
Confidence            66           666666666666666666653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=1.2e-14  Score=112.19  Aligned_cols=100  Identities=21%  Similarity=0.265  Sum_probs=89.5

Q ss_pred             HHHhchHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            8 FDRLLLSEHNRKTAEANYA----------------KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~----------------~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +-+.+.|++|++.|++++.                .+|.++.++.++|.++..++++          ++||..|++||++
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------~~Ai~~~~~al~~  106 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW----------QGAVDSCLEALEI  106 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhccc----------chhhhhhhhhhhh
Confidence            4456678889888888874                4688889999999999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      +|+++.+|+++|.+|..+|           ++++|+.+|++|++++|+|......+.
T Consensus       107 ~p~~~~a~~~~g~~~~~l~-----------~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLK-----------EYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999           999999999999999999876655553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.2e-14  Score=109.89  Aligned_cols=99  Identities=20%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhC
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA---------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID   72 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~---------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ld   72 (200)
                      +=+.+.|++|++.|++++...|.+.               .++.++|.+++.++++          ++|+..+++||+++
T Consensus        23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~----------~~A~~~~~~al~~~   92 (170)
T d1p5qa1          23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF----------SAAIESCNKALELD   92 (170)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhc----------ccccchhhhhhhcc
Confidence            3456789999999999999988653               5678899999999998          99999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        73 P~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      |+++.+++.+|.+|..+|           +|++|+.+|++|++++|+|...+..+
T Consensus        93 p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~P~n~~~~~~l  136 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLYPNNKAAKTQL  136 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999           99999999999999999998655544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-14  Score=111.01  Aligned_cols=90  Identities=13%  Similarity=0.010  Sum_probs=82.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      .-..+.|+.|++.+++   +.|.++.+++++|.++..+|++          ++|++.|++|+++||+++.+|+++|.+|.
T Consensus        15 ~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~----------~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_          15 AADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNM----------TEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCc----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3456789999999875   5778899999999999999999          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+|           +|++|+..|++|+...|.+.
T Consensus        82 ~~g-----------~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          82 QTE-----------KYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HTT-----------CHHHHHHHHHHHHHTTTTCS
T ss_pred             hhc-----------cHHHHHHHHHHHHHhCccCc
Confidence            999           99999999999999887764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.54  E-value=7.4e-14  Score=106.72  Aligned_cols=100  Identities=18%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDA----------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~----------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      +=+.+.|++|++.|++++..-|...                .++.|+|.++..++++          ++|+..+++||++
T Consensus        27 ~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~----------~~Al~~~~~al~~   96 (153)
T d2fbna1          27 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY----------PKAIDHASKVLKI   96 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhccc----------chhhhhhhccccc
Confidence            3456789999999999998665433                4678999999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      +|++..+|+++|.+|..+|           ++++|+.+|+++++++|+|...+..+.
T Consensus        97 ~p~~~ka~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFG-----------FLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999           999999999999999999986655554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.3e-14  Score=102.58  Aligned_cols=91  Identities=25%  Similarity=0.391  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +-+...|..++..|++          ++|+.+|+++|+++|+++.+|.++|.+|..+|           ++++|+.+|++
T Consensus         4 ~~l~~~g~~~~~~g~~----------~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~   62 (117)
T d1elwa_           4 NELKEKGNKALSVGNI----------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-----------DYQKAYEDGCK   62 (117)
T ss_dssp             HHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCcchhhhhcccccccccc-----------cccccchhhhh
Confidence            4466789999999998          99999999999999999999999999999988           99999999999


Q ss_pred             HHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992          113 AVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus       113 Al~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      +++++|++.                     .|+++++++|..++++.++.+.-
T Consensus        63 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999997                     88999999999999999988753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.50  E-value=1.5e-13  Score=106.12  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=88.6

Q ss_pred             HHHHhchHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh
Q 028992            7 DFDRLLLSEHNRKTAEANYAKDPL---------------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI   71 (200)
Q Consensus         7 ~~~~l~~fe~A~~~~e~a~~~~P~---------------d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l   71 (200)
                      ++=+.+.|++|++.|++++..-|.               ...+++|+|.|+..++++          ++|+..+++++++
T Consensus        24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~----------~~Ai~~~~~al~l   93 (168)
T d1kt1a1          24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY----------TKAVECCDKALGL   93 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc----------ccchhhhhhhhhc
Confidence            345678899999999999975443               234678999999999998          9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 028992           72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE  128 (200)
Q Consensus        72 dP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle  128 (200)
                      ||++..+++.+|.+|..+|           ++++|+.+|++++.++|+|......+.
T Consensus        94 ~p~~~~a~~~~~~~~~~l~-----------~~~~A~~~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMN-----------EFESAKGDFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999           999999999999999999986655553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.6e-13  Score=102.48  Aligned_cols=90  Identities=13%  Similarity=0.193  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +.+...|+.++..|+|          ++|+.+|++|+++||+++.+|.++|.+|..+|           ++++|+.+|++
T Consensus        11 ~~l~~~gn~~~~~~~y----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~k   69 (159)
T d1a17a_          11 EELKTQANDYFKAKDY----------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-----------CYGYALGDATR   69 (159)
T ss_dssp             HHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHhhhccccchhhhhhhhhhHHHHHhcc-----------ccchHHHHHHH
Confidence            4466789999999999          99999999999999999999999999999999           99999999999


Q ss_pred             HHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992          113 AVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus       113 Al~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      ||+++|++.                     .|++++++.|..++++..+...
T Consensus        70 al~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999996                     8889999999999998887754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.9e-14  Score=109.24  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHH
Q 028992           30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC  109 (200)
Q Consensus        30 ~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~  109 (200)
                      .+++.+...|..++..|+|          ++|+..|++||+++|+++.+|.++|.+|..+|           +|++|+.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~----------~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~-----------~~~~Ai~~   60 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKY----------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-----------QPEQALAD   60 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh-----------hhhhhhHH
Confidence            3577888999999999999          99999999999999999999999999999999           99999999


Q ss_pred             HHHHHHhCCCCH
Q 028992          110 FQRAVDEEPTNE  121 (200)
Q Consensus       110 fqkAl~l~P~~~  121 (200)
                      |++|++++|++.
T Consensus        61 ~~~al~l~p~~~   72 (201)
T d2c2la1          61 CRRALELDGQSV   72 (201)
T ss_dssp             HHHHTTSCTTCH
T ss_pred             HHHHHHhCCCcH
Confidence            999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=3.1e-13  Score=112.92  Aligned_cols=128  Identities=13%  Similarity=0.027  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      ..++|++.++++++.||++.++|...+.++..++.........+++++|+..|+++++++|+++.+++.+|.++...+  
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~--  121 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--  121 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc--
Confidence            458999999999999999999999999999988887666677788899999999999999999999999999999887  


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHHHhccc
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGINQQT  149 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~~~~~~  149 (200)
                             ++++++|+.+++++++.+|.+.                      .++++++++|..+.++.+++..+..++.
T Consensus       122 -------~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         122 -------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             -------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             -------cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence                   5579999999999999999986                      6677888999999999999999886554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.4e-12  Score=101.75  Aligned_cols=92  Identities=16%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------------   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------------   75 (200)
                      +-+++.|++|++.|++++++||+++.+++++|.++..+|++          ++|+..|++|++..|.+            
T Consensus        46 ~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~----------~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          46 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY----------DLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH----------HHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            45788999999999999999999999999999999999999          99999999999987764            


Q ss_pred             ----HHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           76 ----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        76 ----~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                          .++++++|.+|..+|           ++++|++.|++|+.++|+.
T Consensus       116 ~~~~~e~~~n~a~~~~~~~-----------~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKE-----------EWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCSG
T ss_pred             ccchHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCc
Confidence                478999999999999           9999999999999998874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.35  E-value=1.8e-12  Score=94.04  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHH
Q 028992           33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR  112 (200)
Q Consensus        33 ~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqk  112 (200)
                      +.++++|.++...|++          ++|+..|+++++++|+++.+|..||.++...|           ++++|+.+|++
T Consensus        17 ~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----------~~~~A~~~~~~   75 (112)
T d1hxia_          17 ENPMEEGLSMLKLANL----------AEAALAFEAVCQKEPEREEAWRSLGLTQAENE-----------KDGLAIIALNH   75 (112)
T ss_dssp             SCHHHHHHHHHHTTCH----------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh----------HHHHHHHhhhcccccccchhhhhhhhhhhhhh-----------hHHHhhccccc
Confidence            4568899999999998          99999999999999999999999999999998           99999999999


Q ss_pred             HHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHHhcc
Q 028992          113 AVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ  148 (200)
Q Consensus       113 Al~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~~~~  148 (200)
                      |++++|++             ++++.+++..+..++
T Consensus        76 al~~~p~~-------------~~a~~~la~~y~~~g   98 (112)
T d1hxia_          76 ARMLDPKD-------------IAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHCTTC-------------HHHHHHHHHHHHHHH
T ss_pred             cccccccc-------------ccchHHHHHHHHHCC
Confidence            99998876             566666666665444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=1.9e-12  Score=98.30  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH--------------
Q 028992           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------  121 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~--------------  121 (200)
                      +++++|+..|++|+++||+++++++++|.++..++ -.+...+.++.+++|+.+|++|++++|++.              
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~-~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELS-QFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            34599999999999999999999999999998765 223334567789999999999999999985              


Q ss_pred             ------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992          122 ------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus       122 ------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                                        .|+++++++|+....|..|+...
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                              57788888888888888877543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.5e-12  Score=89.20  Aligned_cols=72  Identities=19%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCcccCChHHhhcCH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-------HYTLWSLGNAHTSCGFLTADLSEAKGDF  103 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~-------~~a~~~LG~a~~~~G~l~~~~~~a~~~~  103 (200)
                      +++-.+.+|.++...|++          ++|+..|++|++++|.+       .+++.+||.+|..+|           ++
T Consensus         4 saddc~~lG~~~~~~g~y----------~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g-----------~~   62 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADY----------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-----------DL   62 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-----------CH
T ss_pred             cHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC-----------Ch
Confidence            567889999999999999          99999999999997654       789999999999999           99


Q ss_pred             HHHHHHHHHHHHhCCCCHHH
Q 028992          104 DKASECFQRAVDEEPTNELY  123 (200)
Q Consensus       104 d~A~~~fqkAl~l~P~~~~y  123 (200)
                      ++|+.+|++|++++|+++..
T Consensus        63 ~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_          63 DKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHH
Confidence            99999999999999998643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.6e-12  Score=93.28  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHH
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ  111 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fq  111 (200)
                      +..+-++|++++..++|          ++|+.+|++||+++|+++.++.++|.+|..+|           +|++|+.+|+
T Consensus         4 a~~~k~~G~~~~~~~~y----------~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~   62 (128)
T d1elra_           4 ALKEKELGNDAYKKKDF----------DTALKHYDKAKELDPTNMTYITNQAAVYFEKG-----------DYNKCRELCE   62 (128)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC-----------chHHHHHHHH
Confidence            34566899999999998          99999999999999999999999999999998           9999999999


Q ss_pred             HHHHhCCCCH
Q 028992          112 RAVDEEPTNE  121 (200)
Q Consensus       112 kAl~l~P~~~  121 (200)
                      +||+++|++.
T Consensus        63 ~al~l~~~~~   72 (128)
T d1elra_          63 KAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHhCcccH
Confidence            9999998875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.28  E-value=1.5e-12  Score=99.18  Aligned_cols=90  Identities=18%  Similarity=0.052  Sum_probs=78.7

Q ss_pred             HhchHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCC---
Q 028992           10 RLLLSEHNRKTAEANYAKDPLD------------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---   74 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d------------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~---   74 (200)
                      +.+.|++|++.|+++++++|+.            +.++.++|.+|..+|++          ++|+..++++|++.|+   
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~----------~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF----------DEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCcc----------chhhHhhhhhhhccccccc
Confidence            4467999999999999998875            46899999999999999          9999999999988653   


Q ss_pred             --------CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCC
Q 028992           75 --------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN  120 (200)
Q Consensus        75 --------~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~  120 (200)
                              ...+++++|.+|..+|           ++++|+.+|++|+++.|+.
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg-----------~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhHHHHhhhHHHHHHHH-----------HHHHHHHHHHHHHHhhHHh
Confidence                    2447899999999999           9999999999999997654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=110.26  Aligned_cols=113  Identities=13%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC   89 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~   89 (200)
                      ..++|+.|+..+++++.++|.+...+.++|.++...++.          ++|+..+++++.++|  +.++.+||.++...
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~--~~~~~~LG~l~~~~  165 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHT----------SAIVKPQSSSCSYIC--QHCLVHLGDIARYR  165 (497)
T ss_dssp             HHHHHHHHHHHHTC-----------------------------------------CCHHHHHHH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCH----------HHHHHHHHHHhCCCH--HHHHHHHHHHHHHc
Confidence            356788888888888899999999999999888888777          566666666665554  34556666666665


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                      |           ++++|+.+|++|++++|++.                     .|.+||.+.|..+.++.||++.+-
T Consensus       166 ~-----------~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         166 N-----------QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             T-----------CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             c-----------cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            5           66666666666666666664                     556666666666777777776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.1e-10  Score=88.42  Aligned_cols=93  Identities=15%  Similarity=0.214  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCcccCCh
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---------------HYTLWSLGNAHTSCGFLTADL   96 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~---------------~~a~~~LG~a~~~~G~l~~~~   96 (200)
                      +..+...|..++..+++          ++|+..|++||++.|..               ..++.++|.+|..+|      
T Consensus        13 a~~l~~~G~~~~~~~~~----------~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~------   76 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKY----------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ------   76 (170)
T ss_dssp             HHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh------
Confidence            56677899999999999          99999999999998874               356778999999999      


Q ss_pred             HHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 028992           97 SEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        97 ~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                           +|++|+.++++||+++|++.                     .|+++++++|+.+++...+....-
T Consensus        77 -----~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          77 -----AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -----hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 99999999999999999997                     899999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.8e-10  Score=95.79  Aligned_cols=95  Identities=9%  Similarity=-0.085  Sum_probs=65.0

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHH-HHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW-SLGNAH   86 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~-~LG~a~   86 (200)
                      ..+.+.+++|+..++.+++.+|.++.+|+.+|.++..+++..        +++|+..+++++++||++..+++ .+|.++
T Consensus        83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1          83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc--------HHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            345667899999999999999999999999999998877632        25555555555555555555543 445555


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ...+           ++++|+.+++++++.+|++.
T Consensus       155 ~~~~-----------~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         155 QAAV-----------APAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HTCC-----------CHHHHHHHHHTTTTTTCCCH
T ss_pred             Hhcc-----------ccHHHHHHHHHHHHcCCCCH
Confidence            5555           55555555555555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=85.97  Aligned_cols=89  Identities=9%  Similarity=0.040  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHh
Q 028992           37 RWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE  116 (200)
Q Consensus        37 ~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l  116 (200)
                      ++.+.++..+++          ++|++.|++||.++|+++++++++|.++...+        -.+++++|+.+|++++..
T Consensus         4 ~l~n~~~~~~~l----------~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~--------~~~d~~~Ai~~l~~~l~~   65 (122)
T d1nzna_           4 AVLNELVSVEDL----------LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR--------YNDDIRKGIVLLEELLPK   65 (122)
T ss_dssp             HHHHHHHHHHHH----------HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS--------SHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcCHHHH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHhc
Confidence            566677777777          99999999999999999999999999997633        012678899999999999


Q ss_pred             CCCCH-----------------------HHHHHHHhCCCChHHHHHHHHH
Q 028992          117 EPTNE-----------------------LYQKSLEVSTKAPELHMELHKH  143 (200)
Q Consensus       117 ~P~~~-----------------------~y~kAle~~~k~~e~~~~l~~~  143 (200)
                      +|++.                       .|+++|+++|+.+++...+..+
T Consensus        66 ~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          66 GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            98763                       8888999999999888766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.08  E-value=1.1e-09  Score=83.01  Aligned_cols=92  Identities=17%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCcccCC
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----------------YTLWSLGNAHTSCGFLTAD   95 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----------------~a~~~LG~a~~~~G~l~~~   95 (200)
                      +..+...|..++..++|          ++|+.+|++||.+-|...                .++.|+|.+|..+|     
T Consensus        17 a~~~~~~G~~~f~~~~y----------~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~-----   81 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEI----------NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-----   81 (153)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc-----
Confidence            34566689999999988          999999999998876533                46789999999999     


Q ss_pred             hHHhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           96 LSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        96 ~~~a~~~~d~A~~~fqkAl~l~P~~~---------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                            ++++|+.+|++||+++|++.                     .|+++++++|+.+++..++....
T Consensus        82 ------~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          82 ------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             ------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ------ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  99999999999999999997                     88899999999999988887543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=3.3e-10  Score=86.56  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+++.|++|+..+.++++++|+++.+++++|.++..++++          ++|+..|++|++++|++.+++..|+.++.
T Consensus        87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~----------~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY----------DQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999          99999999999999999999999999987


Q ss_pred             hcC
Q 028992           88 SCG   90 (200)
Q Consensus        88 ~~G   90 (200)
                      ...
T Consensus       157 ~l~  159 (169)
T d1ihga1         157 KIK  159 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.3e-09  Score=85.54  Aligned_cols=84  Identities=14%  Similarity=-0.016  Sum_probs=77.1

Q ss_pred             HhchHHHHHHHHHHHHhhCCCCH----------------------HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLDA----------------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEE   67 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d~----------------------~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~   67 (200)
                      ..+.+++|++.+.+++.+.|++.                      +++.+++.++..+|++          ++|+..+++
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~----------~~Al~~~~~   92 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA----------SAVIAELEA   92 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----------hHHHHHHHH
Confidence            45689999999999999987653                      5789999999999998          999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHH
Q 028992           68 ALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV  114 (200)
Q Consensus        68 AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl  114 (200)
                      ++++||.+..+|.+|+.+|...|           ++++|+..|+++.
T Consensus        93 al~~~P~~e~~~~~l~~al~~~G-----------r~~eAl~~y~~~~  128 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSD-----------RQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHH
Confidence            99999999999999999999999           9999999999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=9.6e-10  Score=82.57  Aligned_cols=97  Identities=9%  Similarity=0.110  Sum_probs=77.1

Q ss_pred             CChhHHHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH-HHHHH
Q 028992            3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWS   81 (200)
Q Consensus         3 ~~~~~~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~-~a~~~   81 (200)
                      ++.+|++++      ++.+++...-+|. +++.++.|.+|....+       ...+++||..|+++++.+|.+. +++|+
T Consensus        13 l~~~el~~~------~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~-------~~d~~~gI~lLe~~~~~~p~~~rd~lY~   78 (124)
T d2pqrb1          13 LYPQQLEIL------RQQVVSEGGPTAT-IQSRFNYAWGLIKSTD-------VNDERLGVKILTDIYKEAESRRRECLYY   78 (124)
T ss_dssp             CCHHHHHHH------HHHHHHTTGGGSC-HHHHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CCHHHHHHH------HHHHHHHhCCCCC-cchHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            345565555      3444444333444 8899999999987543       2446999999999999999876 89999


Q ss_pred             HHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 028992           82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ  124 (200)
Q Consensus        82 LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~  124 (200)
                      ||.+|+.+|           +|++|..+++++|+++|+|...+
T Consensus        79 Lav~yyklg-----------dy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          79 LTIGCYKLG-----------EYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHT-----------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHh-----------hHHHHHHHHHHHHccCCCcHHHH
Confidence            999999999           99999999999999999998543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.7e-10  Score=80.17  Aligned_cols=70  Identities=13%  Similarity=-0.008  Sum_probs=62.9

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLD-------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS   81 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d-------~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~   81 (200)
                      -+.+.|++|++.+++|+++.|.+       ++++.++|.++..+|++          ++|+..|++||++||++++++.|
T Consensus        16 ~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~----------~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_          16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL----------DKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh----------HHHHHHHHHHHHhCcCCHHHHHH
Confidence            35678999999999999986654       78999999999999999          99999999999999999999999


Q ss_pred             HHHHHHh
Q 028992           82 LGNAHTS   88 (200)
Q Consensus        82 LG~a~~~   88 (200)
                      ++.....
T Consensus        86 l~~~~~~   92 (95)
T d1tjca_          86 LKYFEYI   92 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.01  E-value=1.1e-09  Score=83.81  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      -+++.|++|+..+++++.++|++..+++++|.++..+|++          ++|+..|+++++++|++..++..++.+...
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~----------~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF----------ESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999998          999999999999999999999999999877


Q ss_pred             cC
Q 028992           89 CG   90 (200)
Q Consensus        89 ~G   90 (200)
                      .+
T Consensus       145 ~~  146 (168)
T d1kt1a1         145 AK  146 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5e-10  Score=99.71  Aligned_cols=97  Identities=14%  Similarity=0.046  Sum_probs=76.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      +.+.+.+++|...+++++..+|  ..++.++|.++...+++          ++|+..|++|++++|+++.+|++||.++.
T Consensus       130 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~----------~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         130 SNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQT----------SQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             -------------CCHHHHHHH--HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccH----------HHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4567788899999999888877  46899999999999888          99999999999999999999999999999


Q ss_pred             hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 028992           88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL  127 (200)
Q Consensus        88 ~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAl  127 (200)
                      ..|           ++.+|+.+|.||+..+|.++..+..|
T Consensus       198 ~~~-----------~~~~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         198 SKG-----------DHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HTT-----------CHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HcC-----------CHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            988           99999999999999999998444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1e-08  Score=84.64  Aligned_cols=120  Identities=10%  Similarity=0.083  Sum_probs=105.8

Q ss_pred             HHhchHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAH   86 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~-~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~-a~~~LG~a~   86 (200)
                      .....+++|+..+++++. ..|.+...|..++..+...+++          ++|...|+++++++|.++. +|..++...
T Consensus        75 ~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~----------~~a~~i~~~~l~~~~~~~~~~w~~~~~~~  144 (308)
T d2onda1          75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            345578999999999997 4899999999999999988887          9999999999999998865 667888888


Q ss_pred             HhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHhCCCChHHHHHHHHHH
Q 028992           87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHG  144 (200)
Q Consensus        87 ~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~----------------------~y~kAle~~~k~~e~~~~l~~~~  144 (200)
                      ...|           ++++|..+|++|++..|.+.                      .|+++++.+|+.++++..+++.+
T Consensus       145 ~~~~-----------~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         145 RRAE-----------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHH-----------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcC-----------ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            8877           99999999999999999875                      78888999999999999999988


Q ss_pred             Hhccc
Q 028992          145 INQQT  149 (200)
Q Consensus       145 ~~~~~  149 (200)
                      ..++.
T Consensus       214 ~~~g~  218 (308)
T d2onda1         214 SHLNE  218 (308)
T ss_dssp             HTTCC
T ss_pred             HHcCC
Confidence            87654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.91  E-value=2.8e-09  Score=88.57  Aligned_cols=103  Identities=14%  Similarity=0.033  Sum_probs=84.6

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      =+-+.+++|++.++++++.+|+|++.+..+|.+|+..|++          ++|+..|+++++++|++..++..++.++..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~----------e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF----------ERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            3557899999999999999999999999999999999999          999999999999999999999999998765


Q ss_pred             cCc-------------c-cCCh----------HHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGF-------------L-TADL----------SEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~-------------l-~~~~----------~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      .+.             + .|+.          ....|++++|...++++.+..|+..
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            441             1 1211          1234677777777777777777654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.1e-09  Score=86.48  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             HHHhchHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------
Q 028992            8 FDRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------   75 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~------P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------   75 (200)
                      |.-++.|++|++.|+++.++.      +..+.++.++|.++..++++          ++|++.|++++++.++.      
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS----------VNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCc----------HHHHHHHHHhhHHhhhcccchhH
Confidence            445667999999999999873      33467899999999999998          99999999999997776      


Q ss_pred             HHHHHHHHHHHHh-cCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           76 HYTLWSLGNAHTS-CGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        76 ~~a~~~LG~a~~~-~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      ..++.++|.+|.. .|           ++++|+.+|++|+++.+.
T Consensus       117 ~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         117 ANFKFELGEILENDLH-----------DYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHH-----------HHHHHHHHHHHHHHHHHh
Confidence            6788899998855 57           999999999999987543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.74  E-value=4.2e-09  Score=79.48  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=55.9

Q ss_pred             HHHHHHH--HHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHhcCcccCChH
Q 028992           32 ADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH------------YTLWSLGNAHTSCGFLTADLS   97 (200)
Q Consensus        32 ~~~l~~l--G~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~------------~a~~~LG~a~~~~G~l~~~~~   97 (200)
                      ++++..+  |..++..|+|          ++|+..|++||+++|+.+            .+|.++|.+|..+|       
T Consensus         7 a~a~~~l~~g~~~~~~g~y----------~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-------   69 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEY----------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-------   69 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-------
Confidence            3445555  6777777888          999999999999999864            57889999999999       


Q ss_pred             HhhcCHHHHHHHHHHHHHhCC
Q 028992           98 EAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        98 ~a~~~~d~A~~~fqkAl~l~P  118 (200)
                          +|++|+.++++++++.|
T Consensus        70 ----~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          70 ----SFDEALHSADKALHYFN   86 (156)
T ss_dssp             ----CHHHHHHHHHHHHHHHH
T ss_pred             ----ccchhhHhhhhhhhccc
Confidence                99999999999998755

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.8e-08  Score=81.33  Aligned_cols=93  Identities=17%  Similarity=0.118  Sum_probs=79.5

Q ss_pred             HHHhchHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-hcCCcccccccccHHHHHHHHHHHHHhCCC------
Q 028992            8 FDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALVIDPA------   74 (200)
Q Consensus         8 ~~~l~~fe~A~~~~e~a~~~~P~d------~~~l~~lG~al~~-l~~~~~~~~~~~~~~eAi~~le~AL~ldP~------   74 (200)
                      +.+++.+++|++.+++++.+.+..      ..++.++|.++.. ++++          ++|++.|++|+++.+.      
T Consensus        87 y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY----------AKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHH----------HHHHHHHHHHHHHHHhcCchhh
Confidence            567889999999999999887666      6788888988865 5777          9999999999988544      


Q ss_pred             CHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        75 ~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ...++.++|.+|..+|           +|++|+.+|++++...|.+.
T Consensus       157 ~~~~~~~la~~~~~~g-----------~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         157 SNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHhCccch
Confidence            2456889999999999           99999999999999998875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=2.6e-07  Score=75.90  Aligned_cols=92  Identities=10%  Similarity=0.006  Sum_probs=69.8

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDAD-NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT   87 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~-~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~   87 (200)
                      ++.+.++.|+..+++++...|.+.. +|..++..+...+.+          ++|++.|+++++..|.+...+...+....
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~----------~~ar~i~~~al~~~~~~~~~~~~~a~~e~  179 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI----------KSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH----------HHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4667788888888888888887654 678888887777766          77888888888888888877777776543


Q ss_pred             -hcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           88 -SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        88 -~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                       ..|           +.+.|..+|++++...|++.
T Consensus       180 ~~~~-----------~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         180 YCSK-----------DKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HTSC-----------CHHHHHHHHHHHHHHHTTCH
T ss_pred             Hhcc-----------CHHHHHHHHHHHHHhhhhhH
Confidence             345           77778888888888877776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5.4e-07  Score=71.10  Aligned_cols=88  Identities=11%  Similarity=0.063  Sum_probs=76.6

Q ss_pred             HhchHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCC------HHH
Q 028992           10 RLLLSEHNRKTAEANYAKDPLD-----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYT   78 (200)
Q Consensus        10 ~l~~fe~A~~~~e~a~~~~P~d-----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~------~~a   78 (200)
                      ..+.+++|++.++++++..|++     ..+++.+|.++..+|++          ++|+..|++++++.|..      ..+
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL----------TRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            4568999999999999999987     45788999999999999          99999999999986654      346


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCC
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP  118 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P  118 (200)
                      +.++|.++...|           +++.|...+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~-----------~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          94 LIQQSEILFAQG-----------FLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhH
Confidence            678899999988           99999999999998643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=2.5e-07  Score=73.10  Aligned_cols=90  Identities=12%  Similarity=-0.021  Sum_probs=77.2

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHh------CCCCHHH
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLD----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------DPAKHYT   78 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d----~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~l------dP~~~~a   78 (200)
                      ...+.+++|++.+++++...|.+    ...+.++|.++..+|++          ++|+..|++++.+      .|....+
T Consensus       224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~  293 (366)
T d1hz4a_         224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF----------EPAEIVLEELNENARSLRLMSDLNRN  293 (366)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhcccChHHHHH
Confidence            35568899999999999887765    45678899999999998          9999999999844      5667789


Q ss_pred             HHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCC
Q 028992           79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT  119 (200)
Q Consensus        79 ~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~  119 (200)
                      +.++|.+|..+|           ++++|+++|++|+++.+.
T Consensus       294 ~~~la~~~~~~g-----------~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         294 LLLLNQLYWQAG-----------RKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhhh
Confidence            999999999999           999999999999998653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.35  E-value=4.8e-07  Score=74.74  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=52.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        56 ~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      +.+++|++.|+++++.+|+++++++.||.+|...|           ++++|+..|+++++++|++.
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G-----------~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-----------DFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHCGGGH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCcH
Confidence            44599999999999999999999999999999999           99999999999999999887

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=3.9e-06  Score=65.03  Aligned_cols=69  Identities=16%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHhc
Q 028992           32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----------------------YTLWSLGNAHTSC   89 (200)
Q Consensus        32 ~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~----------------------~a~~~LG~a~~~~   89 (200)
                      .+.+.+.|..+...|++          ++|++.|.+||.+.|...                      +++.+++.++..+
T Consensus        11 f~~~~~~g~~~~~~g~~----------e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRF----------EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHHHHHTTCH----------HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            46788999999999998          999999999999987643                      5788999999999


Q ss_pred             CcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        90 G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      |           ++++|+.+++++++++|.++
T Consensus        81 g-----------~~~~Al~~~~~al~~~P~~e  101 (179)
T d2ff4a2          81 G-----------RASAVIAELEALTFEHPYRE  101 (179)
T ss_dssp             T-----------CHHHHHHHHHHHHHHSTTCH
T ss_pred             C-----------CchHHHHHHHHHHHhCCccH
Confidence            9           99999999999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.1e-05  Score=59.92  Aligned_cols=63  Identities=8%  Similarity=-0.062  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028992           13 LSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA   85 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~-~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a   85 (200)
                      ...+++..++..++.+|.+. ++++++|.++.++|++          ++|..+++++|+++|++..+....-.+
T Consensus        53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy----------~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY----------SMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            46789999999999999875 8999999999999999          999999999999999999986655444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.93  E-value=9.8e-05  Score=53.40  Aligned_cols=91  Identities=12%  Similarity=0.071  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS-CGF   91 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~-~G~   91 (200)
                      .+++|++.++++.+.  +++++.+++|..+.. |.     .....+++|+..|++|.+.  .++++.++||.+|.. .| 
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~-g~-----~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~g-  106 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYEN-GK-----YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG-  106 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CS-----SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-
T ss_pred             CHHHHHHHHhhhhcc--cchhhhhhHHHhhhh-cc-----ccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCc-
Confidence            456777777776653  678888888887764 21     1234458888888888765  577888888888765 11 


Q ss_pred             ccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           92 LTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        92 l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                             ...++++|+.+|++|.+......
T Consensus       107 -------v~~d~~~A~~~~~~Aa~~G~~~A  129 (133)
T d1klxa_         107 -------VVKNEKQAVKTFEKACRLGSEDA  129 (133)
T ss_dssp             -------SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             -------cCCCHHHHHHHHHHHHHCCCHHH
Confidence                   22378888888888887765443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00055  Score=53.44  Aligned_cols=96  Identities=16%  Similarity=0.062  Sum_probs=71.3

Q ss_pred             HHhchHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 028992            9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS   88 (200)
Q Consensus         9 ~~l~~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~   88 (200)
                      .+.+.|++|++.++++.+.  +|+++++++|.++..-.      ...+.+..|+..++.+...  .++.+..+||.++..
T Consensus        13 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~------~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~   82 (265)
T d1ouva_          13 YKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQ------GVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYS   82 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC------CcchhHHHHHHhhcccccc--cccchhhcccccccc
Confidence            4556899999999999664  68999999999987622      1234568899888887754  478888889888765


Q ss_pred             cCcccCChHHhhcCHHHHHHHHHHHHHhCCCCH
Q 028992           89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE  121 (200)
Q Consensus        89 ~G~l~~~~~~a~~~~d~A~~~fqkAl~l~P~~~  121 (200)
                      ..       ....+.+.|..+|++++...+...
T Consensus        83 ~~-------~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          83 GQ-------GVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             TS-------SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             cc-------ccchhhHHHHHHHhhhhhhhhhhH
Confidence            21       113377888888888888776555

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.63  E-value=0.00036  Score=54.54  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcccCChHHhhcCHHHHHHHH
Q 028992           31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECF  110 (200)
Q Consensus        31 d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l~~~~~~a~~~~d~A~~~f  110 (200)
                      ||+.++++|..+...+++          ++|+..|++|.+.  ++++++++||.+|..-.       ....++.+|..++
T Consensus         1 ~p~~~~~lG~~~~~~~d~----------~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~-------~~~~d~~~a~~~~   61 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDF----------TQAKKYFEKACDL--KENSGCFNLGVLYYQGQ-------GVEKNLKKAASFY   61 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-------SSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-------CcchhHHHHHHhh
Confidence            789999999999998888          9999999999775  68999999999997611       0133888889998


Q ss_pred             HHHHHhCC
Q 028992          111 QRAVDEEP  118 (200)
Q Consensus       111 qkAl~l~P  118 (200)
                      +++.+.+-
T Consensus        62 ~~a~~~~~   69 (265)
T d1ouva_          62 AKACDLNY   69 (265)
T ss_dssp             HHHHHTTC
T ss_pred             cccccccc
Confidence            88887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.00044  Score=49.77  Aligned_cols=95  Identities=12%  Similarity=0.013  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcc
Q 028992           13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL   92 (200)
Q Consensus        13 ~fe~A~~~~e~a~~~~P~d~~~l~~lG~al~~l~~~~~~~~~~~~~~eAi~~le~AL~ldP~~~~a~~~LG~a~~~~G~l   92 (200)
                      .+++|++.++++.+.+  ++.+.+++|..            .....++|+..|+++.+.  +++.+.+.||.+|.. |..
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~------------~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~-g~~   70 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVSN------------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYEN-GKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHTC------------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CSS
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhccc------------cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhh-ccc
Confidence            6789999999998774  66667777631            123458999999999775  689999999999875 211


Q ss_pred             cCChHHhhcCHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHHHHHH
Q 028992           93 TADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI  145 (200)
Q Consensus        93 ~~~~~~a~~~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~~~~~  145 (200)
                            ...++++|+++|++|.+...               |+...+|+..+.
T Consensus        71 ------~~~d~~~A~~~~~~aa~~g~---------------~~a~~~Lg~~y~  102 (133)
T d1klxa_          71 ------VKKDLRKAAQYYSKACGLND---------------QDGCLILGYKQY  102 (133)
T ss_dssp             ------SCCCHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHH
T ss_pred             ------cchhhHHHHHHHhhhhccCc---------------chHHHHHHHHHH
Confidence                  13489999999999998753               666677776654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.94  E-value=2.5  Score=28.00  Aligned_cols=33  Identities=18%  Similarity=0.554  Sum_probs=23.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCChHHHHHHH
Q 028992          102 DFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELH  141 (200)
Q Consensus       102 ~~d~A~~~fqkAl~l~P~~~~y~kAle~~~k~~e~~~~l~  141 (200)
                      .||+||+|.++|..      ....|+.+ ++.+++...|.
T Consensus        23 rydeAIech~kA~~------yl~eA~kl-t~s~~~l~SLq   55 (83)
T d2crba1          23 KYEEAISCHRKATT------YLSEAMKL-TESEQAHLSLE   55 (83)
T ss_dssp             CHHHHHHHHHHHHH------HHHHHHTT-CCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH------HHHHHHhC-CCcHHHHHHHH
Confidence            99999999999886      35567766 55555555444