Citrus Sinensis ID: 029001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHcccccccccccccccccccccccccccccccccHHHHHEEEEccccccccccccccccccEEEEEcccccEEcccccccHcccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
melctaiqtqsaisnhhhpfltattapaLARTKSALSlkqttvsrsgyglrsrilyytnplpkatseetssgtdqyvvdkrdgataaedvpaveknvynesvatavpkeespvdgltnELLDNLkikfdsedkysLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Flexible Loop (DISEMBL)
MELCTAIQTqsaisnhhhpFLTATTAPALARTksalslkqttvsrsgyglrsrILYYTnplpkatseetssgtdqyVVDKRDGAtaaedvpaveknvynesvatavpkeespvdglTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEelkqqvlgsndd
Low Complexity Region (SEG)
MELCTAIQTQSAISNHHHPFltattapalartKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVlygtgallalwlttVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Disordered region (IsUnstruct)
******************PFLTATT****************TVSRSGYGLRSRILYYTN********************************************************LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDEL*****************
Disordered Region (DISOPRED)
*********Q****NH******************************GYGLRSRILY************************************************************TNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ*VLG****
Disordered Region (DISEMBL)
********TQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPK**********DQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ********
Disordered Region (DISPRO)
*ELCTAIQTQSAISNHHHPFLTATT********SALSLKQTTVSRSGYGLRSRILYYTNPLPK**********DQYVVDKRDGATAAED**********************PVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVL*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVFPKLMEVVGLGYTLWFSWRxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	no	no	0.44	0.536	0.49	2e-19
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.34	0.390	0.311	5e-06
Q119Z5	881	Glutamate--tRNA ligase OS	yes	no	0.475	0.107	0.272	2e-05

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 72/100 (72%), Gaps = 12/100 (12%)

Query: 108 KEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVV---------FPKL 157
           +E S +D  TNEL+ +LK K+D  E+K ++++YG GA++A+WL+++V          PK+
Sbjct: 66  EETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKV 123

Query: 158 MEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 197
           ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct: 124 MELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 9/77 (11%)

Query: 131 EDKYSLVLYGTGALLALWLTTVVF---------PKLMEVVGLGYTLWFSWRYLLFKKNRD 181
           +DKY++       ++ALW +  +          P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98  DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157

Query: 182 ELATKIEELKQQVLGSN 198
            L  K++   + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=gltX PE=3 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 30/125 (24%)

Query: 102 VATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV---------LYGTG 142
           V T++  ++ PVD +TN+ ++           + I F+  D  + +         L+G  
Sbjct: 754 VETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLYQQYQGQLKLFGWL 813

Query: 143 ALLALWLTTV-----------VFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELK 191
           AL+ L  T +           +   + E++G+ Y +WF +RYLL + NR EL  KIE +K
Sbjct: 814 ALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIK 873

Query: 192 QQVLG 196
           +++ G
Sbjct: 874 REIFG 878

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
225469778	204	PREDICTED: uncharacterized protein LOC10	0.96	0.941	0.537	2e-51
359495653	204	PREDICTED: uncharacterized protein LOC10	0.96	0.941	0.537	4e-51
388506910	199	unknown [Lotus japonicus]	0.835	0.839	0.482	2e-34
351723571	197	uncharacterized protein LOC100499731 [Gl	0.79	0.802	0.485	2e-32
297798056	194	threonine endopeptidase [Arabidopsis lyr	0.905	0.932	0.408	4e-30
351727288	200	uncharacterized protein LOC100305966 [Gl	0.715	0.715	0.502	6e-30
18420175	193	uncharacterized protein [Arabidopsis tha	0.9	0.932	0.417	2e-29
357485585	182	Glutamyl-tRNA synthetase [Medicago trunc	0.745	0.818	0.477	2e-29
4467116	153	hypothetical protein [Arabidopsis thalia	0.63	0.823	0.469	8e-26
449508380	210	PREDICTED: uncharacterized protein At4g0	0.715	0.680	0.343	2e-23

>gi|225469778|ref|XP_002274430.1| PREDICTED: uncharacterized protein LOC100261101 [Vitis vinifera] gi|297735928|emb|CBI18704.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 138/212 (65%), Gaps = 20/212 (9%)

Query: 1   MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNP 60
           MELCT      A SN HH  L    A  L     ++  KQ+ +SR+  G     LY+ NP
Sbjct: 1   MELCTT----RAFSNLHHRTLFNPLANRLRWKTISIPFKQSPISRTSPG----SLYFNNP 52

Query: 61  LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLT-- 117
           L +A+ SE +SSG DQY+ ++RD     ED+PA E+NVYNE + T  P E+S V+  T  
Sbjct: 53  LLRASISEGSSSGADQYIGEERDSVLVMEDIPATEENVYNEVIPTEAPIEDSQVEEQTVA 112

Query: 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVV---------FPKLMEVVGLGYTLW 168
            E LDNL IKFDSED YS+ LYGTGAL ALW  + +         FPKLME+VGLGYTLW
Sbjct: 113 FEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIPIFPKLMEIVGLGYTLW 172

Query: 169 FSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
           FS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 173 FSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495653|ref|XP_003635047.1| PREDICTED: uncharacterized protein LOC100853187 isoform 1 [Vitis vinifera] gi|359495655|ref|XP_003635048.1| PREDICTED: uncharacterized protein LOC100853187 isoform 2 [Vitis vinifera] gi|297735931|emb|CBI18707.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 137/212 (64%), Gaps = 20/212 (9%)

Query: 1   MELCTAIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNP 60
           MELCT      A SN HH  L    A  L     ++  KQ+ +SR+  G     LY+ NP
Sbjct: 1   MELCTT----RAFSNLHHRTLFNPLANRLRWKTISIPFKQSPISRTSPG----SLYFNNP 52

Query: 61  LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLT-- 117
           L +A+ SE +SSG DQY  ++RD     ED+PA E+NVYNE + T  P E+S V+  T  
Sbjct: 53  LLRASISEGSSSGADQYFGEERDSVLVMEDIPATEENVYNEVIPTEAPIEDSQVEEQTVA 112

Query: 118 NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVV---------FPKLMEVVGLGYTLW 168
            E LDNL IKFDSED YS+ LYGTGAL ALW  + +         FPKLME+VGLGYTLW
Sbjct: 113 FEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIPIFPKLMEIVGLGYTLW 172

Query: 169 FSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
           FS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 173 FSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506910|gb|AFK41521.1| unknown [Lotus japonicus]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 113/176 (64%), Gaps = 9/176 (5%)

Query: 33  KSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPA 92
           K  L  +Q T+      L SR ++  N L +ATS + +SG+  +  +KRDG    +DV  
Sbjct: 23  KPFLPPRQQTLITPSAALLSRSIFVRNLLTRATSSDETSGSSSFYGEKRDGVVILDDVKG 82

Query: 93  VEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTV 152
             +N ++E+V +  PKEE PVD     LLD+L +K D  D  S+VLYG+GA++ALWL + 
Sbjct: 83  AGENGFSETVVSQDPKEEVPVDEQAFALLDDLNMKLDLNDTGSIVLYGSGAVVALWLLSA 142

Query: 153 V---------FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSND 199
           V         FPKL+EVVGL YT+WF+ RYLLFKKNRDEL  KIEELK+QV+GS D
Sbjct: 143 VIGAIDSIPLFPKLLEVVGLSYTVWFTTRYLLFKKNRDELGAKIEELKEQVIGSED 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723571|ref|NP_001235236.1| uncharacterized protein LOC100499731 [Glycine max] gi|255626121|gb|ACU13405.1| unknown [Glycine max]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 112/173 (64%), Gaps = 15/173 (8%)

Query: 40  QTTVSRSGYGLRSRILYYTNPLPKA-TSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVY 98
           QT ++ S   L SR +   N LPKA +SEE S+G  Q+  +KRDG    E+V    KN +
Sbjct: 28  QTPLTHSAV-LLSRSICLRNLLPKAMSSEERSTGGSQFFNEKRDGVIILENVKEDNKNEF 86

Query: 99  NESVATAVPKEESPVDG--LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVF-- 154
           +++V     +EE   DG  L+ +L+D  K+ FD++D  S+VLYG GAL+ALWLT+ V   
Sbjct: 87  DKTVIEDTKEEELSDDGQGLSFDLMD--KLNFDTDDTGSIVLYGGGALVALWLTSAVIGA 144

Query: 155 -------PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
                  PKL+EVVGL YT+WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 145 IDSIPLIPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798056|ref|XP_002866912.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297312748|gb|EFH43171.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 32/213 (15%)

Query: 1   MELCT---AIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYY 57
           MELCT    + T    SN+ H +L   +   +    S L L +   S     L+SR L  
Sbjct: 1   MELCTRSTTVITHLPWSNNGHGYLAGKSVHRI----SLLPLHRKVAS---LVLQSRTLRC 53

Query: 58  TNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGL 116
           +   P  T SEETS+G +++ ++ RDG      V AVE+   N   + A   +   ++ L
Sbjct: 54  SRKFPGETVSEETSTGVNEFGLEDRDGV-----VVAVEEKTSNSEASQAEDDQTQALEFL 108

Query: 117 TNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVV---------FPKLMEVVGLGYTL 167
            +       IK DS+  YS++LYG+GA++AL+LT+ +         FPKLMEVVGLGYTL
Sbjct: 109 ND-------IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTL 161

Query: 168 WFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
           WFS RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 162 WFSTRYLLFKRNREELKTKVSEIKKQVLGSDSE 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727288|ref|NP_001235620.1| uncharacterized protein LOC100305966 [Glycine max] gi|255627137|gb|ACU13913.1| unknown [Glycine max]

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 105/167 (62%), Gaps = 24/167 (14%)

Query: 52  SRILYYTNPLPKATS--EETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKE 109
           SR +   N  PKATS  EE SSG  Q+  +KRDG    EDV   E N  NE   T +  E
Sbjct: 40  SRSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVK--EDNNKNEFDKTVI--E 95

Query: 110 ESPVD-------GLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVV--------- 153
           ++  D       GL+ +LLD  K+ FD++D  S+V+YG GAL+ALWLT+ V         
Sbjct: 96  DTKQDLFDDDGQGLSFDLLD--KLNFDTDDTGSIVVYGGGALVALWLTSAVIGAIDSIPL 153

Query: 154 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
           FPKL+EVVGL YT+WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 154 FPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420175|ref|NP_568035.1| uncharacterized protein [Arabidopsis thaliana] gi|21554198|gb|AAM63277.1| unknown [Arabidopsis thaliana] gi|107738205|gb|ABF83661.1| At4g38100 [Arabidopsis thaliana] gi|332661478|gb|AEE86878.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 33/213 (15%)

Query: 1   MELCT---AIQTQSAISNHHHPFLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYY 57
           MELCT    I T    S + H +L   +   ++     L L++   S     L+SR L  
Sbjct: 1   MELCTRSTTIITHLPASFNGHGYLAGKSVDRIS-----LPLQRNVAS---LVLQSRTLRC 52

Query: 58  TNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGL 116
           +   P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+     L
Sbjct: 53  SRKFPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEETQAL 104

Query: 117 TNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVV---------FPKLMEVVGLGYTL 167
             E L++  IK DS+  YS++LYG+GA++AL+LT+ +         FPKLMEVVGLGYTL
Sbjct: 105 --EFLND--IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTL 160

Query: 168 WFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 200
           WF+ RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 161 WFTTRYLLFKRNREELKTKVSEIKKQVLGSDSE 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485585|ref|XP_003613080.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|355514415|gb|AES96038.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|388495348|gb|AFK35740.1| unknown [Medicago truncatula]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 25/174 (14%)

Query: 33  KSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPA 92
           K +   K   +SRS + LR+        +    SEE  SG  +   +KRDG    E    
Sbjct: 23  KPSFPPKHALLSRSAF-LRN--------VRATASEENPSGAGKLFNEKRDGVITLE---- 69

Query: 93  VEKNVYNESVATAVPKEESP-VDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTT 151
            +KN YNE+V    PKE  P  +GL  ELLD  K+ FD  D  SL +YG GA++ALWLT+
Sbjct: 70  ADKNGYNETVENEDPKEVLPDGEGLPLELLD--KLNFDINDTTSLAVYGGGAIVALWLTS 127

Query: 152 V---------VFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 196
                     V PKL EVVGLGY+LWF++RYLLFK+NR+ELA KIEELK+QVLG
Sbjct: 128 AIVGAVDSIPVIPKLFEVVGLGYSLWFTYRYLLFKRNREELANKIEELKEQVLG 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4467116|emb|CAB37550.1| hypothetical protein [Arabidopsis thaliana] gi|7270793|emb|CAB80475.1| hypothetical protein [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 96/147 (65%), Gaps = 21/147 (14%)

Query: 63  KATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLD 122
           +  +EETS+G +++ V+ RDG   A    A EKN  +E  A     EE+      N+   
Sbjct: 19  ETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE--APQAEDEETQALEFLND--- 69

Query: 123 NLKIKFDSEDKYSLVLYGTGALLALWLTTVV---------FPKLMEVVGLGYTLWFSWRY 173
              IK DS+  YS++LYG+GA++AL+LT+ +         FPKLMEVVGLGYTLWF+ RY
Sbjct: 70  ---IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRY 126

Query: 174 LLFKKNRDELATKIEELKQQVLGSNDD 200
           LLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 127 LLFKRNREELKTKVSEIKKQVLGSDSE 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508380|ref|XP_004163298.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Cucumis sativus]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 49/192 (25%)

Query: 56  YYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNES----------VATA 105
           ++   LP+A + + S+G+  +  ++RD  T  ED P+       +S           AT 
Sbjct: 19  HFAVSLPRAAASDESNGSSSFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSVVLAATE 78

Query: 106 VPKEE-----------------------------SPVDGLTNELLDNLK-IKFDSEDKYS 135
           VPK+E                              P++G   +  + L  +K +S D YS
Sbjct: 79  VPKQEPVEDVPVITLDDSSSAGKVEMVTSEEPKEQPLEGAQEQAFEFLNDLKLESVDTYS 138

Query: 136 LVLYGTGALLALWLTTVVF---------PKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 186
           L LYG GA   +WL + +          PKL+EVVGLGY++WF+ RYLLFK++RDELA +
Sbjct: 139 LALYGAGAFFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAAR 198

Query: 187 IEELKQQVLGSN 198
           I+ELK+QVLGS+
Sbjct: 199 IDELKEQVLGSD 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.915	0.948	0.361	1e-22
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.48	0.585	0.412	7.1e-13
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.22	0.252	0.409	5.8e-05
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.19	0.243	0.421	0.00081

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 76/210 (36%), Positives = 111/210 (52%)

Query:     1 MELCTAIQTQSAISNHHHPFXXXXXXXXXXXXKSALSLKQTTVSRSGYGLRSRILYYTNP 60
             MELCT  ++ + I++    F            + +L L++   S     L+SR L  +  
Sbjct:     1 MELCT--RSTTIITHLPASFNGHGYLAGKSVDRISLPLQRNVASLV---LQSRTLRCSRK 55

Query:    61 LPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNE 119
              P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+     L  E
Sbjct:    56 FPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEETQAL--E 105

Query:   120 LLDNLKIKFDSEDKYSLVXXXXXXXXXXXXXXVV---------FPKLMEVVGLGYTLWFS 170
              L+++K+  DS+  YS++               +         FPKLMEVVGLGYTLWF+
Sbjct:   106 FLNDIKL--DSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFT 163

Query:   171 WRYLLFKKNRDELATKIEELKQQVLGSNDD 200
              RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct:   164 TRYLLFKRNREELKTKVSEIKKQVLGSDSE 193

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 45/109 (41%), Positives = 62/109 (56%)

Query:   100 ESVATAVPKEE-SPVDGLTNELLDNLKIKFDS-EDKYSLVXXXXXXXXXXXXXXVV---- 153
             E + T    EE S +D  TNEL+ +LK K+D  E+K +++              +V    
Sbjct:    57 ELLKTRASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAI 114

Query:   154 -----FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 197
                   PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct:   115 NSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 18/44 (40%), Positives = 33/44 (75%)

Query:   155 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 198
             P ++E+VG+GYT WF+++ L+FK +R+ L  K++   + +LGS+
Sbjct:   131 PGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00081, Sum P(2) = 0.00081
 Identities = 16/38 (42%), Positives = 28/38 (73%)

Query:   159 EVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 196
             E+VG+ ++ WF++RYLLFK +R EL+  +++    +LG
Sbjct:   118 ELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	2e-24
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	7e-10

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score = 91.5 bits (228), Expect = 2e-24
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 13/81 (16%)

Query: 129 DSEDKYSLVLYGTGA----LLALWLTTVV---------FPKLMEVVGLGYTLWFSWRYLL 175
             EDKY   L G GA    ++ALWL+  V          P L+E+VGLGY+ WF +RYLL
Sbjct: 10  KFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYSGWFVYRYLL 69

Query: 176 FKKNRDELATKIEELKQQVLG 196
           F ++R EL  KI+ELK+++LG
Sbjct: 70  FSEDRQELLAKIQELKKEILG 90

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 13/102 (12%)

Query: 110 ESPVDGLTNELLDNLKIKFDS----EDKYSLVLYGTGALLALWLTT---------VVFPK 156
           E+P +  T EL + +K   ++    EDKY++       ++ALW +           + P 
Sbjct: 66  EAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPG 125

Query: 157 LMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 198
           ++E+VG+GYT WF+++ L+FK +R+ L  KI++  ++++GS+
Sbjct: 126 VLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGSS 167

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PLN02777	167	photosystem I P subunit (PSI-P)	99.96
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.91

>PLN02777 photosystem I P subunit (PSI-P)

Probab=99.96  E-value=1.7e-30  Score=216.33  Aligned_cols=82  Identities=33%  Similarity=0.728  Sum_probs=79.3

Q ss_pred             hHHHHHHhhhhhc-cccchhhhhHHHHHHHHHHhhh---------cccchhhhhhhhhhhhhhHhhhhccccchHHHHHH
Q 029001          117 TNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTT---------VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK  186 (200)
Q Consensus       117 ~~Evl~~Lk~kwD-seDK~avv~~G~gAlVAlWlss---------PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~k  186 (200)
                      .+|+++.+|++|| .|||++++++++||+|++|++.         ||+|++||||||||++||+||||+|+++|+||+++
T Consensus        76 ~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~k  155 (167)
T PLN02777         76 LPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEK  155 (167)
T ss_pred             HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHH
Confidence            5699999999999 7999999999999999999987         99999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCCC
Q 029001          187 IEELKQQVLGSN  198 (200)
Q Consensus       187 I~~lk~~I~G~~  198 (200)
                      |+++|++|+|++
T Consensus       156 i~~lk~~IlG~s  167 (167)
T PLN02777        156 IKDTYKEIIGSS  167 (167)
T ss_pred             HHHHHHHhhCCC
Confidence            999999999963

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.91  E-value=5.6e-25  Score=166.16  Aligned_cols=75  Identities=48%  Similarity=0.879  Sum_probs=69.0

Q ss_pred             HHhhhhhc-cccchhhhhHHHHH----HHHHHhhh---------cccchhhhhhhhhhhhhhHhhhhccccchHHHHHHH
Q 029001          122 DNLKIKFD-SEDKYSLVLYGTGA----LLALWLTT---------VVFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI  187 (200)
Q Consensus       122 ~~Lk~kwD-seDK~avv~~G~gA----lVAlWlss---------PLLp~lLELVGLgYT~WFvyRyLLfke~RqEL~~kI  187 (200)
                      ++++++|+ ..++|+.+++++|+    ++++|+++         ||+|++|||||+||++||+||||+++++||||.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            56777788 58899999888888    88888876         999999999999999999999999999999999999


Q ss_pred             HHHhhhhcC
Q 029001          188 EELKQQVLG  196 (200)
Q Consensus       188 ~~lk~~I~G  196 (200)
                      +++|++|+|
T Consensus        82 ~~~k~~i~G   90 (90)
T PF14159_consen   82 QSLKKEILG   90 (90)
T ss_pred             HHHHHHhcC
Confidence            999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00