Citrus Sinensis ID: 029016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGAELSCMDEVFLSLDDLDEISLPN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEcccccEEEEEEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHccccccEEEEEccccccHHHccccEEcccccccEEcccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgdninananvnlppgfrfcptdEELLVHFLQRKVallpchpdvipdldlypydpwqlngkalaEGNQWYFYsrktqnrmtgngywkpmgieesVLTRADKKVGLKKYYIFHLgeasagvktNWIMQeyrlsdsaaasssntsssrsskrrvnsktdyskWVICRVFerncdddddgaelscmDEVFLslddldeislpn
Flexible Loop (DISEMBL)
mgdninananvnlppgFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLgeasagvkTNWIMQEYRLsdsaaasssntsssrsskrrvnsktdyskwvICRVFERNCDDDDDGAELSCMDEVFlslddldeislpn
Low Complexity Region (SEG)
MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLsdsaaasssntsssrsskrrvnsktDYSKWVICRVFERNCDDDDDGAELSCMDEVFLSLDDLDEISLPN
Disordered region (IsUnstruct)
**********VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYR**************************DYSKWVICRVFERNCDDDDDGAELSCMDEVFLSLD*********
Disordered Region (DISOPRED)
***************GFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLS***********************TDYSKWVICRV*************************DLD****P*
Disordered Region (DISEMBL)
MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLS************************DYSKWVICRVFERNCDDDDDGAELSCMDEVFLSLDDLDEISLPN
Disordered Region (DISPRO)
***********NLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDS********************KTDYSKWVICRVFERNC*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGAELSCMDEVFLSLDDLDEISLPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q8GY42	323	NAC transcription factor	no	no	0.91	0.563	0.365	4e-35
A0SPJ6	396	NAC transcription factor	N/A	no	0.84	0.424	0.382	4e-34
Q8H4S4	425	NAC transcription factor	no	no	0.86	0.404	0.376	7e-34
A0SPJ8	406	NAC transcription factor	N/A	no	0.855	0.421	0.381	2e-33
D2SMN4	406	NAC transcription factor	N/A	no	0.855	0.421	0.381	2e-33
A2YMR0	425	NAC transcription factor	N/A	no	0.86	0.404	0.366	3e-33
A0SPJ9	402	NAC transcription factor	N/A	no	0.84	0.417	0.371	5e-33
Q52QH4	318	NAC domain-containing pro	no	no	0.765	0.481	0.416	5e-33
O49255	268	NAC transcription factor	no	no	0.86	0.641	0.359	2e-32
A0SPJ3	405	NAC transcription factor	N/A	no	0.87	0.429	0.366	3e-32

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 121/205 (59%), Gaps = 23/205 (11%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGD+     + +LPPGFRF PTDEEL+VH+L++K   +P    +I ++DLY +DPW+L  
Sbjct: 4   MGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPS 63

Query: 61  KALAEGNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFH 112
           KA    ++WYF+S + +        NR   +GYWK  G ++ + T    KVG+KK  +F+
Sbjct: 64  KASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFY 123

Query: 113 LGEASAGVKTNWIMQEYRLSD---SAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFER 169
            G+   G+KT+WIM EYRL+D   S AA   + +++R +  R++       WV+CR++++
Sbjct: 124 GGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDD------WVLCRIYKK 177

Query: 170 NCDDDDDGAELSCMDEVFLSLDDLD 194
           N       ++   M+ V L  D ++
Sbjct: 178 NS------SQRPTMERVLLREDLME 196

Transcription factor of the NAC family. May be associated with anther development and pollen production.
Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 23/191 (12%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A +P    +I ++DLY +DPW+L  KA     +WYF+
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTR--ADKKVGLKKYYIFHLGEASAGVKT 122
           S + +        NR   +GYWK  G ++ +L      +KVG+KK  +F+ G+   G+KT
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLKT 147

Query: 123 NWIMQEYRLSDSAAASSSN-----TSSSRSSKRRVNSKTDYSKWVICRVFER--NCDDDD 175
           NWIM EYRL+D++++++++     T  SRS+  R++       WV+CR++++       D
Sbjct: 148 NWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDD------WVLCRIYKKINKAAAGD 201

Query: 176 DGAELSCMDEV 186
               + C D V
Sbjct: 202 QQRSMECEDSV 212

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A +P    +I ++DLY +DPW L  KA     +WYF+
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFF 88

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTRAD--KKVGLKKYYIFHLGEASAGVKT 122
           S + +        NR   +GYWK  G ++ +++     +KVG+KK  +F+ G+   GVKT
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 123 NWIMQEYRLSDSAAASSSNTSSSR-------SSKRRVNSKTDYSKWVICRVFERNCDDDD 175
           NWIM EYRL+D+++++++  ++ R        SK  V+ + D   WV+CR++++      
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLD--DWVLCRIYKKTNKAGA 206

Query: 176 DGAELSCMDEV 186
               + C D V
Sbjct: 207 GQRSMECEDSV 217

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 23/194 (11%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A  P    +I ++DLY +DPW+L  KA    ++WYF+
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTRAD----KKVGLKKYYIFHLGEASAGV 120
           S + +        NR   +GYWK  G ++ +L  A     +KVG+KK  +F+ G+   G+
Sbjct: 95  SPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 121 KTNWIMQEYRLSDSAAASSSNTSSSR----SSKRRVNSKTDYSKWVICRVFERNCDD--- 173
           KTNWIM EYRL+    AS+ +T++SR    +   R  +      WV+CR++++       
Sbjct: 155 KTNWIMHEYRLT---GASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAA 211

Query: 174 -DDDGAELSCMDEV 186
             D+   + C D V
Sbjct: 212 VGDEQRSMECEDSV 225

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 23/194 (11%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A  P    +I ++DLY +DPW+L  KA    ++WYF+
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTRAD----KKVGLKKYYIFHLGEASAGV 120
           S + +        NR   +GYWK  G ++ +L  A     +KVG+KK  +F+ G+   G+
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 121 KTNWIMQEYRLSDSAAASSSNTSSSR----SSKRRVNSKTDYSKWVICRVFERNCDD--- 173
           KTNWIM EYRL+    AS+ +T++SR    +   R  +      WV+CR++++       
Sbjct: 155 KTNWIMHEYRLT---GASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAA 211

Query: 174 -DDDGAELSCMDEV 186
             D+   + C D V
Sbjct: 212 VGDEQRSMECEDSV 225

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 19/191 (9%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A +P    +I ++DLY +DPW+L  KA     +WYF+
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFF 88

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTRAD--KKVGLKKYYIFHLGEASAGVKT 122
           S + +        NR   +GYWK  G ++ ++      +KVG+KK  +F+ G+   GVKT
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 123 NWIMQEYRLSDSAAASSSNTSSSR-------SSKRRVNSKTDYSKWVICRVFERNCDDDD 175
           NWIM EYRL+D+++++++  ++ +        S+  V+ + D   WV+CR++++      
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLD--DWVLCRIYKKTNKAGA 206

Query: 176 DGAELSCMDEV 186
               + C D V
Sbjct: 207 GQRSMECEDSV 217

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 23/191 (12%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A +P    +I ++DLY +DPW+L  KA     +WYF+
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTR--ADKKVGLKKYYIFHLGEASAGVKT 122
           S + +        NR   +GYWK  G ++ +L      +KVG+K   +F+ G+   G+KT
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLKT 147

Query: 123 NWIMQEYRLSDSAAASSSN-----TSSSRSSKRRVNSKTDYSKWVICRVFER--NCDDDD 175
           NWIM EYRL+D++++++++     T  SR++  R++       WV+CR++++       D
Sbjct: 148 NWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLD------DWVLCRIYKKINKAAAAD 201

Query: 176 DGAELSCMDEV 186
               + C D V
Sbjct: 202 QQRSMECEDSV 212

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 20/173 (11%)

Query: 6   NANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAE 65
           +A A +NLPPGFRF PTDEEL+VH+L RKVA  P    +I ++DLY  DPW L  KAL  
Sbjct: 14  DAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFG 73

Query: 66  GNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKK-VGLKKYYIFHLGEA 116
             +WYF++ + +        NR  G GYWK  G ++ V  +   + VG+KK  +F+ G+A
Sbjct: 74  RKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKA 133

Query: 117 SAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFER 169
             GVKT+WIM EYRL+D+  A      S +             +WV+CR++ +
Sbjct: 134 PRGVKTDWIMHEYRLADADRAPGGKKGSQK-----------LDEWVLCRLYNK 175

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 20/192 (10%)

Query: 5   INANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALA 64
           +   +   LPPGFRF PTDEEL+V++L+ +    PC   +IP++D+Y +DPWQL  K   
Sbjct: 1   MEVTSQSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEF 60

Query: 65  EGNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEA 116
             N+WYF+S + +        NR   +GYWK  G ++++ +     VG+KK  +F+ G  
Sbjct: 61  GENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHS-GSSNVGVKKALVFYKGRP 119

Query: 117 SAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDD 176
             G+KT+WIM EYRL DS  AS+    S R             +WV+CR++++       
Sbjct: 120 PKGIKTDWIMHEYRLHDSRKASTKRNGSMR-----------LDEWVLCRIYKKRGASKLL 168

Query: 177 GAELSCMDEVFL 188
             +   MDEV +
Sbjct: 169 NEQEGFMDEVLM 180

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 17/191 (8%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFY 72
           LPPGFRF PTDEEL+VH+L++K A +P    +I ++DLY +DPW+L  KA     +WYF+
Sbjct: 33  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFF 92

Query: 73  SRKTQ--------NRMTGNGYWKPMGIEESVLTRAD------KKVGLKKYYIFHLGEASA 118
           S + +        NR   +GYWK  G ++ +L          +K+G+KK  +F+ G+   
Sbjct: 93  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 152

Query: 119 GVKTNWIMQEYRLSD-SAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFER--NCDDDD 175
           G+KTNWIM EYRL+D S + ++S      +   R  +      WV+CR++++       D
Sbjct: 153 GLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAGD 212

Query: 176 DGAELSCMDEV 186
                 C D V
Sbjct: 213 QQRSTECEDSV 223

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
255575019	192	NAC domain-containing protein, putative	0.955	0.994	0.710	2e-75
225447803	192	PREDICTED: NAC domain-containing protein	0.96	1.0	0.705	7e-74
356524870	190	PREDICTED: NAC domain-containing protein	0.94	0.989	0.702	1e-73
356525900	190	PREDICTED: NAC domain-containing protein	0.935	0.984	0.699	3e-73
356558598	191	PREDICTED: NAC domain-containing protein	0.935	0.979	0.694	9e-73
356512091	189	PREDICTED: NAC domain-containing protein	0.94	0.994	0.686	1e-71
224073330	192	NAC domain protein, IPR003441 [Populus t	0.93	0.968	0.670	2e-66
297794047	188	ANAC104/XND1 [Arabidopsis lyrata subsp.	0.925	0.984	0.661	1e-65
302398993	204	NAC domain class transcription factor [M	0.97	0.950	0.634	3e-65
224059020	192	NAC domain protein, IPR003441 [Populus t	0.905	0.942	0.623	1e-64

>gi|255575019|ref|XP_002528415.1| NAC domain-containing protein, putative [Ricinus communis] gi|223532151|gb|EEF33957.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 169/197 (85%), Gaps = 6/197 (3%)

Query: 5   INANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALA 64
           ++ N NVNLPPGFRF PT+EEL+VHFLQRK ALLPCHPDVIPDLDLYPYDPW+L+GKALA
Sbjct: 1   MSGNNNVNLPPGFRFYPTEEELVVHFLQRKAALLPCHPDVIPDLDLYPYDPWELDGKALA 60

Query: 65  EGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNW 124
           EG QWY+YSR+TQNR+T NGYWK +GI+E VLT A+K+VG+KKY +F++GEA  G+KTNW
Sbjct: 61  EGRQWYYYSRRTQNRITENGYWKAIGIDEPVLTNANKRVGIKKYSLFYVGEAPGGMKTNW 120

Query: 125 IMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGA-ELSCM 183
           IM+EYRLS S   SSS +S  R      + K DYSKWVIC+V+ERNCDD+DDG+ ELSC+
Sbjct: 121 IMEEYRLSSSDCPSSSRSSKRRG-----HPKIDYSKWVICKVYERNCDDEDDGSTELSCL 175

Query: 184 DEVFLSLDDLDEISLPN 200
           DEVFLSL+D++EISLPN
Sbjct: 176 DEVFLSLEDMEEISLPN 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447803|ref|XP_002266820.1| PREDICTED: NAC domain-containing protein 68 [Vitis vinifera] gi|147828018|emb|CAN66223.1| hypothetical protein VITISV_006066 [Vitis vinifera] gi|296081487|emb|CBI20010.3| unnamed protein product [Vitis vinifera]

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 168/200 (84%), Gaps = 8/200 (4%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGD+     N NLPPGFRF PTDEEL+VHFL RK ALLPCHPDVIPDLDLYPYDPW+L+G
Sbjct: 1   MGDH-----NFNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
           KALAEGNQWY++SR+TQNR T NGYWK +GI+E +++   K+VG+KKY +F++GEA +G+
Sbjct: 56  KALAEGNQWYYFSRRTQNRSTNNGYWKTLGIDEPIMSSGGKRVGMKKYMVFYIGEAPSGI 115

Query: 121 KTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGAEL 180
           K++WIMQEYRLSDS ++SSS  SSS+      +SK DYSKWV+CRV ERN DDDDDG EL
Sbjct: 116 KSSWIMQEYRLSDSGSSSSSGRSSSKRRG---HSKIDYSKWVVCRVSERNSDDDDDGTEL 172

Query: 181 SCMDEVFLSLDDLDEISLPN 200
           S +DEVFLSLDDLDEISLPN
Sbjct: 173 SYLDEVFLSLDDLDEISLPN 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524870|ref|XP_003531051.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 167/202 (82%), Gaps = 14/202 (6%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGDN     NVNLPPGFRF PTDEEL+VHFLQRK  LLPCHPDVIPDL+LYPYDPW+L+G
Sbjct: 1   MGDN-----NVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTR-ADKKVGLKKYYIFHLGEASAG 119
           +ALAEG QWY+YSR+TQNR+T NGYW PMG+EE V++  ++K+VG+KKYY+FHLGEA  G
Sbjct: 56  RALAEGKQWYYYSRRTQNRVTSNGYWMPMGMEEPVISNSSNKRVGMKKYYVFHLGEAPDG 115

Query: 120 VKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDD-DGA 178
             TNWIMQEYRL DSA++S S+   S+        K D+SKWVICRV+ER+ D+DD DG 
Sbjct: 116 NTTNWIMQEYRLLDSASSSISSRRRSQ-------PKPDHSKWVICRVYERDNDEDDGDGT 168

Query: 179 ELSCMDEVFLSLDDLDEISLPN 200
           ELSC+DEVFLSLDDLDEISLPN
Sbjct: 169 ELSCLDEVFLSLDDLDEISLPN 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525900|ref|XP_003531559.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 173/203 (85%), Gaps = 16/203 (7%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGDN     NVNLPPGFRF PTDEEL+VHFL RK +LLPCHPD IPDL++YPYDPW+L+G
Sbjct: 1   MGDN-----NVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDAIPDLEVYPYDPWELDG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVL-TRADKKVGLKKYYIFHLGEA-SA 118
           +ALAEGNQWY+YSR+TQNR+TGNGYWKP G+EE V+ + ++K+VG+KKY++FH+GEA +A
Sbjct: 56  RALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSSTSNKRVGMKKYFVFHVGEAPTA 115

Query: 119 GVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGA 178
           G+KTNWIMQEYRLSDSA+++        SSKR+   K +Y+KWVICRV+ERN  DDD+G 
Sbjct: 116 GIKTNWIMQEYRLSDSASSTR-------SSKRKPQPKIEYNKWVICRVYERN-GDDDNGT 167

Query: 179 ELSCMDEVFLSL-DDLDEISLPN 200
           ELSC+DEVFLSL DDLDEISLPN
Sbjct: 168 ELSCLDEVFLSLDDDLDEISLPN 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558598|ref|XP_003547591.1| PREDICTED: NAC domain-containing protein 68 [Glycine max]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 173/203 (85%), Gaps = 16/203 (7%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGDN     NVNLPPGFRF PTDEEL+VHFL RK +LLPCHPDVIPDL++YPYDPW+L+G
Sbjct: 1   MGDN-----NVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVL-TRADKKVGLKKYYIFHLGEA-SA 118
           +ALAEGNQWY+YSR+TQNR+TGNGYWKP GIEE V+ + ++K+VG+KKY++FH+GEA +A
Sbjct: 56  RALAEGNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAA 115

Query: 119 GVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGA 178
           G+KTNWIMQEYRLSDS++++ S+   S+        K +Y+KWVICRV+ERN  DDD+G 
Sbjct: 116 GIKTNWIMQEYRLSDSSSSTRSSKRKSQ-------PKIEYNKWVICRVYERN-GDDDNGT 167

Query: 179 ELSCMDEVFLSL-DDLDEISLPN 200
           ELSC+DEVFLSL DDLDEISLPN
Sbjct: 168 ELSCLDEVFLSLDDDLDEISLPN 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512091|ref|XP_003524754.1| PREDICTED: NAC domain-containing protein 68-like [Glycine max]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 166/201 (82%), Gaps = 13/201 (6%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGDN     NVNLPPGFRF PTDEEL+VHFLQRK  LLPCHPDVIPDL+LYPYDPW+L+G
Sbjct: 1   MGDN-----NVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVL-TRADKKVGLKKYYIFHLGEASAG 119
           +ALAEG QWY+YSR+TQNR+TGNGYW PMG+EE V+ + ++K+VG+KKYY+FHLGEA  G
Sbjct: 56  RALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVVSSSSNKRVGMKKYYVFHLGEAPDG 115

Query: 120 VKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGAE 179
             TNWIMQEYRL DS ++S S+   S+        K D++KWVIC+V+E++ DDD DG E
Sbjct: 116 NTTNWIMQEYRLLDSDSSSRSSKRRSQ-------PKPDHNKWVICQVYEQDNDDDGDGTE 168

Query: 180 LSCMDEVFLSLDDLDEISLPN 200
           LSC+DEVFLSLDDL+EISLPN
Sbjct: 169 LSCLDEVFLSLDDLEEISLPN 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073330|ref|XP_002304078.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222841510|gb|EEE79057.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 159/194 (81%), Gaps = 8/194 (4%)

Query: 11  VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWY 70
            NLPPGFRFCP+DEEL+VHFL RK ALLPCHPDVIPDLDLYPYDPW+L+GKAL+EG Q Y
Sbjct: 3   ANLPPGFRFCPSDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGKALSEGKQCY 62

Query: 71  FYSRKTQNRMTGNGYWKPM--GIEESVLTRADKK-VGLKKYYIFHLGEASAGVKTNWIMQ 127
           FYSR+TQNR+T NG WKPM   +EE +L   + K VG+KKY+IF+   A+ G+KTNWIM+
Sbjct: 63  FYSRRTQNRITNNGCWKPMVGHVEEPILASENNKLVGIKKYFIFY---AAEGIKTNWIME 119

Query: 128 EYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGA-ELSCMDEV 186
           EY LS+    S  ++ S++SSK R  SK DYSKWVICRV+ER+ ++++DG  ELSC+DEV
Sbjct: 120 EYLLSEH-RTSHDSSPSTKSSKTRARSKQDYSKWVICRVYERSYEEEEDGGKELSCLDEV 178

Query: 187 FLSLDDLDEISLPN 200
           FLSL+DLDEISLPN
Sbjct: 179 FLSLEDLDEISLPN 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794047|ref|XP_002864908.1| ANAC104/XND1 [Arabidopsis lyrata subsp. lyrata] gi|297310743|gb|EFH41167.1| ANAC104/XND1 [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 153/192 (79%), Gaps = 7/192 (3%)

Query: 11  VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWY 70
           +NLPPGFRF PTDEEL+VHFL RK +LLPCHPDVIPDLDLY YDPW L GKAL EG QWY
Sbjct: 1   MNLPPGFRFFPTDEELVVHFLHRKASLLPCHPDVIPDLDLYHYDPWDLPGKALGEGRQWY 60

Query: 71  FYSRKTQNRMTGNGYWKPMGIEESVLTRA-DKKVGLKKYYIFHLGEASAGVKTNWIMQEY 129
           FYSRKTQ R+T NGYW  MG++E + T +  KKVG+KKY  F+LG++    +TNWIMQEY
Sbjct: 61  FYSRKTQERVTSNGYWGSMGMDEPIYTSSTHKKVGIKKYLTFYLGDS----QTNWIMQEY 116

Query: 130 RLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNC--DDDDDGAELSCMDEVF 187
            L DS+++SS ++  S  +    + K DYSKWVICRV+E+NC  ++DDDG ELSC+DEVF
Sbjct: 117 SLPDSSSSSSRSSKRSNRASSSSSHKPDYSKWVICRVYEQNCSEEEDDDGTELSCLDEVF 176

Query: 188 LSLDDLDEISLP 199
           LSLDDLDE+SLP
Sbjct: 177 LSLDDLDEVSLP 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398993|gb|ADL36791.1| NAC domain class transcription factor [Malus x domestica]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 162/208 (77%), Gaps = 14/208 (6%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           MGD+        LPPGFRF PTDEEL+VHFLQRK ALLP HPDVIPDL LYPYDPW+LNG
Sbjct: 1   MGDD-----QFKLPPGFRFDPTDEELVVHFLQRKAALLPFHPDVIPDLHLYPYDPWELNG 55

Query: 61  KALAEGNQWYFYSRKTQNRMTGNGYWKPMGIEESVLTRAD----KKVGLKKYYIFHLGEA 116
           KAL+EG QWYFYSR+ QNR+T NGYWK +GIEE + + +     KKVG+KKY  F +GEA
Sbjct: 56  KALSEGKQWYFYSRRAQNRVTNNGYWKTLGIEEPIFSSSSSNPTKKVGMKKYLTFFVGEA 115

Query: 117 -SAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRV---NSKTDYSKWVICRVFERNCD 172
            ++G+KTNW M EYRLS SA+  +S+++++ +S+       S T+YS +V+C+V+ER  D
Sbjct: 116 PNSGIKTNWTMHEYRLSSSASDCASSSTTTTTSRSSKRRGQSNTEYSGYVLCKVYERE-D 174

Query: 173 DDDDGAELSCMDEVFLSLDDLDEISLPN 200
           DDDDG ELSC+DEVFLSLDDLDEISLPN
Sbjct: 175 DDDDGTELSCLDEVFLSLDDLDEISLPN 202

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059020|ref|XP_002299679.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222846937|gb|EEE84484.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 152/202 (75%), Gaps = 21/202 (10%)

Query: 9   ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG------KA 62
            +VNLPPGFRFCP+DEEL+VHFL RK ALLPCHPDVIPDL LYPYDPWQL+G      KA
Sbjct: 2   GSVNLPPGFRFCPSDEELVVHFLHRKAALLPCHPDVIPDLGLYPYDPWQLDGTYSILSKA 61

Query: 63  LAEGNQWYFYSRKTQNRMTGNGYWKPM---GIEESVLTRADKKVGLKKYYIFHLGEASAG 119
           L+EG Q YFYSR+TQN++T NG WKPM   G E  + + ++K VG KKY++F+  +   G
Sbjct: 62  LSEGKQRYFYSRRTQNKITSNGCWKPMAGRGEELVLASDSNKTVGTKKYFLFYTAD---G 118

Query: 120 VKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNCDDDDDGA- 178
           V+TNW+M+EYRL        S   +S S+K R   K DYSKWVICRV+ER+ D+DD G  
Sbjct: 119 VRTNWVMEEYRL--------SGFDTSASTKTRNRQKQDYSKWVICRVYERDLDEDDSGTD 170

Query: 179 ELSCMDEVFLSLDDLDEISLPN 200
           +LSC+DEVFLSLDDLDEISLPN
Sbjct: 171 QLSCLDEVFLSLDDLDEISLPN 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2174769	187	XND1 "xylem NAC domain 1" [Ara	0.92	0.983	0.630	9.7e-64
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.6	0.329	0.488	3e-31
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.835	0.517	0.382	8.8e-31
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.635	0.342	0.420	4.7e-29
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.76	0.475	0.394	3.1e-28
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.65	0.410	0.464	3.9e-28
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.61	0.405	0.436	8.4e-28
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.6	0.378	0.480	1e-27
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.595	0.411	0.488	2.2e-27
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.595	0.341	0.419	2.8e-27

TAIR|locus:2174769 XND1 "xylem NAC domain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/192 (63%), Positives = 140/192 (72%)

Query:    11 VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWY 70
             +NLPPGFRF PTDEEL+VHFL RK +LLPCHPDVIPDLDLY YDPW L GKAL EG QWY
Sbjct:     1 MNLPPGFRFFPTDEELVVHFLHRKASLLPCHPDVIPDLDLYHYDPWDLPGKALGEGRQWY 60

Query:    71 FYSRKTQNRMTGNGYWKPMGIEESVLTRAD-KKVGLKKYYIFHLGEASAGVKTNWIMQEY 129
             FYSRKTQ R+T NGYW  MG++E + T +  KKVG+KKY  F+LG++    +TNWIMQEY
Sbjct:    61 FYSRKTQERVTSNGYWGSMGMDEPIYTSSTHKKVGIKKYLTFYLGDS----QTNWIMQEY 116

Query:   130 RLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERNC--DDDDDGAELSCMDEVF 187
              L                         DYSKWVICRV+E+NC  ++DDDG ELSC+DEVF
Sbjct:   117 SLPDSSSSSSRSSKRSSRASSSSHKP-DYSKWVICRVYEQNCSEEEDDDGTELSCLDEVF 175

Query:   188 LSLDDLDEISLP 199
             LSLDDLDE+SLP
Sbjct:   176 LSLDDLDEVSLP 187

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 63/129 (48%), Positives = 84/129 (65%)

Query:    12 NLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYF 71
             NLPPGFRF PTDEEL+VH+L+RK A  P    +I ++DLY +DPW+L  KA     +WYF
Sbjct:    16 NLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYF 75

Query:    72 YS---RK-----TQNRMTGNGYWKPMGIEESVLTR-ADKKVGLKKYYIFHLGEASAGVKT 122
             +S   RK       NR   +GYWK  G ++ VL    ++KVG+KK  +F+ G+   GVK+
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKS 135

Query:   123 NWIMQEYRL 131
             +WIM EYRL
Sbjct:   136 DWIMHEYRL 144

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 68/178 (38%), Positives = 99/178 (55%)

Query:     1 MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
             MGD+     + +LPPGFRF PTDEEL+VH+L++K   +P    +I ++DLY +DPW+L  
Sbjct:     4 MGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPS 63

Query:    61 KALAEGNQWYFYS---RK-----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFH 112
             KA    ++WYF+S   RK       NR   +GYWK  G ++ + T    KVG+KK  +F+
Sbjct:    64 KASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFY 123

Query:   113 LGEASAGVKTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERN 170
              G+   G+KT+WIM EYRL                         D   WV+CR++++N
Sbjct:   124 GGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDD---WVLCRIYKKN 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 58/138 (42%), Positives = 85/138 (61%)

Query:     5 INANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKA-L 63
             +     +++PPGFRF PT+EELL ++L++KV+  P   DVI ++DL   +PW+L  K  +
Sbjct:     9 VAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRI 68

Query:    64 AEG--NQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHL 113
               G  N+WYF+S K +        NR T  G+WK  G ++S+   + KK+GL+K  +F+ 
Sbjct:    69 GSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYT 128

Query:   114 GEASAGVKTNWIMQEYRL 131
             G A  G KT WIM EYRL
Sbjct:   129 GRAPHGQKTEWIMHEYRL 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 67/170 (39%), Positives = 94/170 (55%)

Query:    12 NLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYF 71
             NLPPGFRF PTDEEL++H+L+RK   +P    +I D+DLY +DPW+L  KA     +WYF
Sbjct:    16 NLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYF 75

Query:    72 YS---RK-----TQNRMTGNGYWKPMGIEESVLTRA---DKKVGLKKYYIFHLGEASAGV 120
             +S   RK       NR   +GYWK  G ++ V++      KKVG+KK  +F+ G+   GV
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGV 135

Query:   121 KTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERN 170
             K++WIM EYRL                             WV+CR++++N
Sbjct:   136 KSDWIMHEYRLTDNKPTHICDFGNKKNSLRL-------DDWVLCRIYKKN 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 65/140 (46%), Positives = 89/140 (63%)

Query:     1 MG-DNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLN 59
             MG   ++  A ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L 
Sbjct:     1 MGLQELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLP 60

Query:    60 GKALAEGNQWYFYS---RK-----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIF 111
              KAL    +WYF+S   RK       NR+ G+GYWK  G ++ + T   ++VG+KK  +F
Sbjct:    61 SKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEG-RRVGIKKALVF 119

Query:   112 HLGEASAGVKTNWIMQEYRL 131
             ++G+A  G KTNWIM EYRL
Sbjct:   120 YIGKAPKGTKTNWIMHEYRL 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 58/133 (43%), Positives = 84/133 (63%)

Query:     9 ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGN- 67
             A ++LPPGFRF PTDEEL+ ++L RKV       ++IP++DLY  +PW L  K+   GN 
Sbjct:     2 APMSLPPGFRFHPTDEELVAYYLDRKVNGQAIELEIIPEVDLYKCEPWDLPEKSFLPGND 61

Query:    68 -QWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASA 118
              +WYFYS + +        NR T  GYWK  G + +V ++   K+G+KK  +++ G A  
Sbjct:    62 MEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVESKK-MKMGMKKTLVYYRGRAPH 120

Query:   119 GVKTNWIMQEYRL 131
             G++TNW+M EYRL
Sbjct:   121 GLRTNWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 62/129 (48%), Positives = 84/129 (65%)

Query:    11 VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWY 70
             ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L  KAL    +WY
Sbjct:    12 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 71

Query:    71 FYS---RK-----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKT 122
             F+S   RK       NR+ G+GYWK  G ++ + T   ++VG+KK  +F++G+A  G KT
Sbjct:    72 FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG-QRVGIKKALVFYIGKAPKGTKT 130

Query:   123 NWIMQEYRL 131
             NWIM EYRL
Sbjct:   131 NWIMHEYRL 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 63/129 (48%), Positives = 81/129 (62%)

Query:    11 VNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWY 70
             + LPPGFRF PTDEEL++H+L RK A       +I ++DLY YDPW+L G AL    +WY
Sbjct:     5 LQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWY 64

Query:    71 FYS---RK-----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKT 122
             F+S   RK       NR  G+GYWK  G ++ +     K VG+KK  +F+ G+A  G KT
Sbjct:    65 FFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI--GLPKPVGIKKALVFYAGKAPKGEKT 122

Query:   123 NWIMQEYRL 131
             NWIM EYRL
Sbjct:   123 NWIMHEYRL 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
 Identities = 55/131 (41%), Positives = 84/131 (64%)

Query:    12 NLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPW---QLNGKALAEGNQ 68
             ++PPG+RF PTDEEL+ ++L+ KVA      DVI D+DLY  +PW   +L G+   E  +
Sbjct:     6 HIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRGTGEERE 65

Query:    69 WYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
             WYF+S K +        NR TG+G+WK  G ++++ ++ +  VG++K  +F+ G A  G 
Sbjct:    66 WYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQEL-VGMRKTLVFYKGRAPNGQ 124

Query:   121 KTNWIMQEYRL 131
             K++WIM EYRL
Sbjct:   125 KSDWIMHEYRL 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031526001 SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_57, whole genome shotgun sequence); (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-55

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  172 bits (438), Expect = 1e-55
 Identities = 61/129 (47%), Positives = 84/129 (65%), Gaps = 10/129 (7%)

Query: 13  LPPGFRFCPTDEELLVHFLQRKVALLPCH-PDVIPDLDLYPYDPWQLNG-KALAEGNQWY 70
           LPPGFRF PTDEEL+V++L+RKV   P    DVIP++D+Y ++PW L   KA     +WY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 71  FYSRK--------TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKT 122
           F+S +          NR TG+GYWK  G ++ VL++  + VG+KK  +F+ G A  G KT
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKT 120

Query: 123 NWIMQEYRL 131
           +W+M EYRL
Sbjct: 121 DWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.1e-43  Score=272.24  Aligned_cols=120  Identities=46%  Similarity=0.903  Sum_probs=96.5

Q ss_pred             CCCCeEEcCCHHHHHHHHHHHHHhCCCCCC-CceecCCCCCCCCCCcccccccCCceEEEEeec--------ccceeccc
Q 029016           13 LPPGFRFCPTDEELLVHFLQRKVALLPCHP-DVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK--------TQNRMTGN   83 (200)
Q Consensus        13 LPpG~rF~PTDeELv~~YL~~k~~g~pl~~-~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~--------r~~R~~g~   83 (200)
                      |||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+.....++++||||+++        |.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999887 799999999999999995434466799999997        46788999


Q ss_pred             ceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeC
Q 029016           84 GYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLS  132 (200)
Q Consensus        84 G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~  132 (200)
                      |+||.+|+.+.|.+.+|.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999998878999999999999998888889999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-28
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-28
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-28

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 24/172 (13%)
Query: 9   ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQ 68
             ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L  KAL    +
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 72
Query: 69  WYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
           WYF+S + +        NR+ G+GYWK  G ++ +++   ++VG+KK  +F++G+A  G 
Sbjct: 73  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGT 131
Query: 121 KTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERNCD 172
           KTNWIM EYRL                             WV+CR++++   
Sbjct: 132 KTNWIMHEYRL---------------IEPSRRNGSTKLDDWVLCRIYKKQSS 168

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           M    +A A +NLPPGFRF PTD+EL+ H+L RK A       +I ++DLY +DPW L  
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 61  KALAEGNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFH 112
           +AL    +WYF++ + +        NR  GNGYWK  G ++ V  R  + +G+KK  +F+
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG-RTLGIKKALVFY 121
Query: 113 LGEASAGVKTNWIMQEYRL 131
            G+A  GVKT+WIM EYRL
Sbjct: 122 AGKAPRGVKTDWIMHEYRL 140

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 24/172 (13%)
Query: 9   ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQ 68
             ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L  KAL    +
Sbjct: 16  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE 75
Query: 69  WYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGV 120
           WYF+S + +        NR+ G+GYWK  G ++ +++   ++VG+KK  +F++G+A  G 
Sbjct: 76  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGT 134
Query: 121 KTNWIMQEYRLXXXXXXXXXXXXXXXXXXXXXXXXXDYSKWVICRVFERNCD 172
           KTNWIM EYRL                             WV+CR++++   
Sbjct: 135 KTNWIMHEYRL---------------IEPSRRNGSTKLDDWVLCRIYKKQSS 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-76
1ut7_A	171	No apical meristem protein; transcription regulati	3e-74

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  226 bits (577), Expect = 2e-76
 Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 19/178 (10%)

Query: 1   MGDNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNG 60
           M    +A A +NLPPGFRF PTD+EL+ H+L RK A       +I ++DLY +DPW L  
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62

Query: 61  KALAEGNQWYFYSRKTQ--------NRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFH 112
           +AL    +WYF++ + +        NR  GNGYWK  G ++ V  R  + +G+KK  +F+
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFY 121

Query: 113 LGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERN 170
            G+A  GVKT+WIM EYRL+D+  A++     S               WV+CR++ + 
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGS----------LRLDDWVLCRLYNKK 169

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  220 bits (563), Expect = 3e-74
 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 25/180 (13%)

Query: 1   MG-DNINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLN 59
           MG    +    ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L 
Sbjct: 4   MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63

Query: 60  GKALAEGNQWYFYSRKT--------QNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIF 111
            KAL    +WYF+S +          NR+ G+GYWK  G ++ + T   ++VG+KK  +F
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVF 122

Query: 112 HLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFERNC 171
           ++G+A  G KTNWIM EYRL + +  + S               T    WV+CR++++  
Sbjct: 123 YIGKAPKGTKTNWIMHEYRLIEPSRRNGS---------------TKLDDWVLCRIYKKQS 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=6.4e-55  Score=352.55  Aligned_cols=157  Identities=43%  Similarity=0.895  Sum_probs=133.7

Q ss_pred             ccCCCCCCCCCCCeEEcCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccccccCCceEEEEeec--------
Q 029016            4 NINANANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK--------   75 (200)
Q Consensus         4 ~~~~~~~~~LPpG~rF~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~--------   75 (200)
                      ...+++++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+....++.+|||||++        
T Consensus         6 ~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~   85 (174)
T 3ulx_A            6 ERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGS   85 (174)
T ss_dssp             ---CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----C
T ss_pred             ccccccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCC
Confidence            345678899999999999999999999999999999999999999999999999999887778899999987        


Q ss_pred             ccceecccceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCccccCCCCCCcccccccCCCC
Q 029016           76 TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSK  155 (200)
Q Consensus        76 r~~R~~g~G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (200)
                      |.+|++++|+||++|..+.|.+. |.+||+|++|+||.++++++.+|+|+||||+|.......   ..+       ....
T Consensus        86 R~nR~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~---~~~-------~~~~  154 (174)
T 3ulx_A           86 RPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA---AGA-------KKGS  154 (174)
T ss_dssp             CSCEEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------------
T ss_pred             CceeecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc---ccc-------ccCC
Confidence            57899999999999999999764 899999999999999999999999999999999886210   000       0112


Q ss_pred             CCCCceEEEEEEEeCC
Q 029016          156 TDYSKWVICRVFERNC  171 (200)
Q Consensus       156 ~~~~~~VLCkIy~k~~  171 (200)
                      +..++|||||||+|+.
T Consensus       155 ~~~~~wVlCrvf~K~~  170 (174)
T 3ulx_A          155 LRLDDWVLCRLYNKKN  170 (174)
T ss_dssp             -CCSSEEEEEEEESCC
T ss_pred             CCCCCEEEEEEEEcCC
Confidence            3458999999999975

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=8.4e-54  Score=345.47  Aligned_cols=156  Identities=44%  Similarity=0.905  Sum_probs=132.1

Q ss_pred             CCCccCC-CCCCCCCCCeEEcCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccccccCCceEEEEeec----
Q 029016            1 MGDNINA-NANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK----   75 (200)
Q Consensus         1 ~~~~~~~-~~~~~LPpG~rF~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~----   75 (200)
                      |+..++. ..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++++||||+++    
T Consensus         4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~   83 (171)
T 1ut7_A            4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (171)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence            5555443 46789999999999999999999999999999999999999999999999999887778899999987    


Q ss_pred             ----ccceecccceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCccccCCCCCCccccccc
Q 029016           76 ----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRR  151 (200)
Q Consensus        76 ----r~~R~~g~G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~  151 (200)
                          |.+|++++|+||++|..+.|... |.+||+|++|+||.++++++.+|+|+||||+|......              
T Consensus        84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~--------------  148 (171)
T 1ut7_A           84 PNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--------------  148 (171)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------
T ss_pred             CCCCcccccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--------------
Confidence                57899999999999999999764 69999999999999999999999999999999987510              


Q ss_pred             CCCCCCCCceEEEEEEEeCCC
Q 029016          152 VNSKTDYSKWVICRVFERNCD  172 (200)
Q Consensus       152 ~~~~~~~~~~VLCkIy~k~~~  172 (200)
                       ......++|||||||+|+..
T Consensus       149 -~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A          149 -NGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             -------CCEEEEEEEECC--
T ss_pred             -cCcccCCCEEEEEEEEcCCC
Confidence             01123489999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-51

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  161 bits (408), Expect = 2e-51
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 25/178 (14%)

Query: 1   MGDNINAN-ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLN 59
           MG         ++LPPGFRF PTDEEL+V +L RK A       +I ++DLY +DPW L 
Sbjct: 4   MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63

Query: 60  GKALAEGNQWYFYSRKT--------QNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIF 111
            KAL    +WYF+S +          NR+ G+GYWK  G ++ + +   ++VG+KK  +F
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVF 122

Query: 112 HLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRRVNSKTDYSKWVICRVFER 169
           ++G+A  G KTNWIM EYRL + +               R N  T    WV+CR++++
Sbjct: 123 YIGKAPKGTKTNWIMHEYRLIEPS---------------RRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.7e-53  Score=340.42  Aligned_cols=154  Identities=44%  Similarity=0.919  Sum_probs=130.6

Q ss_pred             CCCccCCC-CCCCCCCCeEEcCCHHHHHHHHHHHHHhCCCCCCCceecCCCCCCCCCCcccccccCCceEEEEeec----
Q 029016            1 MGDNINAN-ANVNLPPGFRFCPTDEELLVHFLQRKVALLPCHPDVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK----   75 (200)
Q Consensus         1 ~~~~~~~~-~~~~LPpG~rF~PTDeELv~~YL~~k~~g~pl~~~~I~~~Dvy~~~P~~L~~~~~~~~~~wyFF~~~----   75 (200)
                      |+.+.+.. ++++|||||||+|||||||.|||++|+.|.|++.++|+++|||.+|||+||+....++++||||+++    
T Consensus         4 ~~~~~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~   83 (166)
T d1ut7a_           4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (166)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             ccccccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeecccc
Confidence            56555554 7899999999999999999999999999999999999999999999999999877778899999987    


Q ss_pred             ----ccceecccceeeeCCcceeEEcCCceeEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCccccCCCCCCccccccc
Q 029016           76 ----TQNRMTGNGYWKPMGIEESVLTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRLSDSAAASSSNTSSSRSSKRR  151 (200)
Q Consensus        76 ----r~~R~~g~G~Wk~~g~~k~I~~~~g~~vG~kr~f~F~~~~~~~~~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~  151 (200)
                          |.+|++++|+||++|+.+.|.+ +|.+||+|++|+||+++.+.+.+|+|+||||+|.+....              
T Consensus        84 ~~g~r~~R~~g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~--------------  148 (166)
T d1ut7a_          84 PNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--------------  148 (166)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------
T ss_pred             CCCCccccccCCCEecccCCCceEec-CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc--------------
Confidence                5678999999999999988854 689999999999999999999999999999999887621              


Q ss_pred             CCCCCCCCceEEEEEEEeC
Q 029016          152 VNSKTDYSKWVICRVFERN  170 (200)
Q Consensus       152 ~~~~~~~~~~VLCkIy~k~  170 (200)
                       ......++|||||||+|.
T Consensus       149 -~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_         149 -NGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             -------CCEEEEEEEECC
T ss_pred             -cCccccCCEEEEEEEecC
Confidence             112335799999999984