Citrus Sinensis ID: 029048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEcEEEEEEEEEcHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccccEEEccccccccccccccccEEccccccHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrSILTVRagatdseysskrsssnepretimlpgcdynhwlivmefpkdpaptrEQMIETYLNTLATVLGSMEEAKKNMYAFStttytgfqctvseetsekfkgdkyvngeiipctyptyqpnkrkeskYVSKRYerrrdgppaerrtrqaagqsesass
Flexible Loop (DISEMBL)
matlyapsilaskpllssrpqltlglrvgsptlrlpsrahsrsiltvragatdseysskrsssnepretimLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETsekfkgdkyvngeiipctyptyqpnkrkeskyvskryerrrdgppaerrtrqaagqsesass
Low Complexity Region (SEG)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDseysskrsssNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Disordered region (IsUnstruct)
*********************************************************************IMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTY****************************************
Disordered Region (DISOPRED)
**********************************************************************MLPGCDYNHWLIVMEFP*****TREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPT*****************************************
Disordered Region (DISEMBL)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAG****************RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQP**************************************
Disordered Region (DISPRO)
********************QLTLGLRVGSPTLRLPS*A*S*SILT****ATDSEY******SNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESKYVS****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQSESASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.815	0.708	0.642	5e-58
Q9LKA5	395	Uncharacterized protein A	no	no	0.49	0.248	0.404	8e-17

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  223 bits (569), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 138/190 (72%), Gaps = 27/190 (14%)

Query: 36  PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
           P ++ S +  TVRA  TD EYSS+R+++N        TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42  PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100

Query: 92  PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK-------- 143
           PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFK        
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWV 160

Query: 144 --------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTR 189
                         GDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R  
Sbjct: 161 LPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRP 220

Query: 190 QAAGQSESAS 199
           +     ES++
Sbjct: 221 KQEATPESST 230

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 45  LTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNT 104
           L+ +A ++     +   S+  P+ETI+L GCD+ HWL+V+E P+   PTR+++I++Y+ T
Sbjct: 65  LSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKT 123

Query: 105 LATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK 143
           LA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K
Sbjct: 124 LAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLK 162


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,628,762
Number of Sequences: 539616
Number of extensions: 2776828
Number of successful extensions: 5818
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5811
Number of HSP's gapped (non-prelim): 9
length of query: 200
length of database: 191,569,459
effective HSP length: 112
effective length of query: 88
effective length of database: 131,132,467
effective search space: 11539657096
effective search space used: 11539657096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
21593052	232	DAG protein, putative [Arabidopsis thali	0.87	0.75	0.658	1e-67
15220382	232	putative plastid developmental protein D	0.87	0.75	0.658	1e-67
225461197	229	PREDICTED: DAG protein, chloroplastic is	0.945	0.825	0.697	6e-67
297843972	232	hypothetical protein ARALYDRAFT_471280 [	0.865	0.745	0.671	3e-62
357446239	221	DAG protein [Medicago truncatula] gi|355	0.985	0.891	0.598	3e-61
449468532	230	PREDICTED: DAG protein, chloroplastic-li	0.89	0.773	0.669	9e-61
255625841	221	unknown [Glycine max]	0.74	0.669	0.686	5e-60
255555105	226	DAG protein, chloroplast precursor, puta	0.66	0.584	0.754	6e-60
255629093	225	unknown [Glycine max]	0.83	0.737	0.647	2e-59
343172728	171	putative plastid developmental protein,	0.705	0.824	0.706	3e-59

>gi|21593052|gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 151/202 (74%), Gaps = 28/202 (13%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRSISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFK----------------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERR 178
           KFK                      GDKY+NGEIIPCTYPTYQP +R  +KY SKRYER+
Sbjct: 151 KFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKRYERK 210

Query: 179 RDG--PPAERRTRQAAGQSESA 198
           RDG  PP +R+ RQ    S+S+
Sbjct: 211 RDGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220382|ref|NP_172610.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|6554182|gb|AAF16628.1|AC011661_6 T23J18.10 [Arabidopsis thaliana] gi|26450103|dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|28827520|gb|AAO50604.1| putative DAG protein [Arabidopsis thaliana] gi|332190614|gb|AEE28735.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 151/202 (74%), Gaps = 28/202 (13%)

Query: 25  GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHW 80
           G+RVG   +P LR  S A SR  +  V+A   DS+YSSKRS+SNE RETIMLPGCDYNHW
Sbjct: 31  GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query: 81  LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
           LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct: 91  LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query: 141 KFK----------------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERR 178
           KFK                      GDKY+NGEIIPCTYPTYQP +R  +KY SKRYER+
Sbjct: 151 KFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKRYERK 210

Query: 179 RDG--PPAERRTRQAAGQSESA 198
           RDG  PP +R+ RQ    S+S+
Sbjct: 211 RDGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461197|ref|XP_002283211.1| PREDICTED: DAG protein, chloroplastic isoform 1 [Vitis vinifera] gi|359493924|ref|XP_003634693.1| PREDICTED: DAG protein, chloroplastic isoform 2 [Vitis vinifera]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 162/215 (75%), Gaps = 26/215 (12%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTL-RLPSRAHSRSILTVRAGATDSEYSSKRSSSNEPR 67
           I +S P   S  QL   LR  S +  RL SR  S ++  +RA  +D EYSSKRSSSNEPR
Sbjct: 16  ISSSHPNPRSTVQLAFPLRFNSISRPRLTSR--SGAVRPIRAAVSDGEYSSKRSSSNEPR 73

Query: 68  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTY 127
           ETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTY
Sbjct: 74  ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTY 133

Query: 128 TGFQCTVSEETSEKFK----------------------GDKYVNGEIIPCTYPTYQPNKR 165
           TGFQCTVSEETSEKFK                      GDKY+NGEIIPCTYPTYQP +R
Sbjct: 134 TGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQR 193

Query: 166 KESKYVSKRYERRRDGPPAE-RRTRQAAGQSESAS 199
           +ESKY S+RYERRRDGPPAE RR RQ A +SES S
Sbjct: 194 RESKYESRRYERRRDGPPAEKRRPRQEASRSESNS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843972|ref|XP_002889867.1| hypothetical protein ARALYDRAFT_471280 [Arabidopsis lyrata subsp. lyrata] gi|297335709|gb|EFH66126.1| hypothetical protein ARALYDRAFT_471280 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 150/201 (74%), Gaps = 28/201 (13%)

Query: 26  LRVG---SPTLRLPSRAHSRS-ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWL 81
           +RVG   +P LR  S A SR  +  V+A   DS+YSSKRSSSNE RETIMLPGCDYNHWL
Sbjct: 32  IRVGDTWTPLLRSISTAGSRRRVAIVKAATVDSDYSSKRSSSNEQRETIMLPGCDYNHWL 91

Query: 82  IVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEK 141
           IVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSEK
Sbjct: 92  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEK 151

Query: 142 FK----------------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRR 179
           FK                      GDKY+NGEIIPCTYPTYQP +R  +KY SKRYER+R
Sbjct: 152 FKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKRYERKR 211

Query: 180 DG--PPAERRTRQAAGQSESA 198
           DG  PP +R+ RQ    S+S+
Sbjct: 212 DGPPPPEQRKPRQEPAASDSS 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446239|ref|XP_003593397.1| DAG protein [Medicago truncatula] gi|355482445|gb|AES63648.1| DAG protein [Medicago truncatula]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/224 (59%), Positives = 153/224 (68%), Gaps = 27/224 (12%)

Query: 1   MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKR 60
           MAT+ + +I +SK L  + P  T         L + S+  SR+ + ++A   D +YSSKR
Sbjct: 1   MATISSFTI-SSKTLTLNLPYHTKTPNFNFNPLSIKSKPSSRNPIRIQA-VLDEDYSSKR 58

Query: 61  SSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
           S SNE RETIMLPGCDYNHWLIVMEFPKDPAP+R+QMI+TYL TLATVLGSMEEAKKNMY
Sbjct: 59  SGSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMY 118

Query: 121 AFSTTTYTGFQCTVSEETSEKFK----------------------GDKYVNGEIIPCTYP 158
           AFSTTTYTGFQCTV E TSEKFK                      GDKY+NGEIIPC YP
Sbjct: 119 AFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNMDYGGDKYINGEIIPCKYP 178

Query: 159 TYQPNKRKESKYVSKRYERRRDGPPAERRT--RQAAGQSESASS 200
           TYQP KR  SK   KRYERRRDGPPA  R   RQ    S+S+S+
Sbjct: 179 TYQP-KRSGSKNDGKRYERRRDGPPAAGRQKPRQETAASDSSST 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468532|ref|XP_004151975.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus]

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 136/203 (66%), Positives = 150/203 (73%), Gaps = 25/203 (12%)

Query: 9   ILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHS--RSILTVRAGATDSEYSSKRSSSNEP 66
           I   KP L  R QL   L + S +    +R HS  +S + VRA A DS+YSSKRSSSNE 
Sbjct: 15  IPLQKPSLLQRVQLGHFLHLNSVSQISTARLHSGSQSRVLVRA-ALDSDYSSKRSSSNEQ 73

Query: 67  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTT 126
           RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTT
Sbjct: 74  RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 133

Query: 127 YTGFQCTVSEETSEKFK----------------------GDKYVNGEIIPCTYPTYQPNK 164
           YTGFQCTVSEETSEKFK                      GDKY+NGEIIP  YP Y+P K
Sbjct: 134 YTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPSKYPVYEPKK 193

Query: 165 RKESKYVSKRYERRRDGPPAERR 187
           R+E+KY S+RYER+RDGPP E+R
Sbjct: 194 RRETKYESRRYERKRDGPPPEQR 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625841|gb|ACU13265.1| unknown [Glycine max]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 132/172 (76%), Gaps = 24/172 (13%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIET 100
           +R+   +RA A D ++S+KRS++NE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+T
Sbjct: 42  TRNCNRIRA-ALDGDFSAKRSNNNEQRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDT 100

Query: 101 YLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK----------------- 143
           YL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFK                 
Sbjct: 101 YLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSHIDVK 160

Query: 144 -----GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQ 190
                GDKY+NGEIIPC YPTYQP KR   K  S+RYERRRDGPP +RR+R 
Sbjct: 161 NKDYGGDKYINGEIIPCKYPTYQP-KRSAPKNESRRYERRRDGPPPDRRSRD 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555105|ref|XP_002518590.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223542435|gb|EEF43977.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 123/155 (79%), Gaps = 23/155 (14%)

Query: 44  ILTVRAGATDSEYSSKRSSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLN 103
           +L  RA ATDS+YS+KRSSSNE RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLN
Sbjct: 48  LLMTRA-ATDSDYSAKRSSSNESRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLN 106

Query: 104 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK-------------------- 143
           TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFK                    
Sbjct: 107 TLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKD 166

Query: 144 --GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYE 176
             GDKY+NGEIIPCTYPTYQP +R  SKY SKRYE
Sbjct: 167 YGGDKYINGEIIPCTYPTYQPKQRNNSKYESKRYE 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629093|gb|ACU14891.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 142/196 (72%), Gaps = 30/196 (15%)

Query: 33  LRLPSR--AHSRSILTVRAGATDSEYSSKRSSS---NEPRETIMLPGCDYNHWLIVMEFP 87
           LRLP      +R+   +RA A D ++S+KRSSS   N+ RETIMLPGC YNHWLIVMEFP
Sbjct: 32  LRLPPSIVTRTRNCNRIRA-ALDGDFSAKRSSSSNNNDQRETIMLPGCGYNHWLIVMEFP 90

Query: 88  KDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK---- 143
           KDPAPTREQMI+TYL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV E TSEKFK    
Sbjct: 91  KDPAPTREQMIDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPG 150

Query: 144 ------------------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAE 185
                             GDKY+NGEIIPC YPTYQP KR   K  S+RYERRRDGPP +
Sbjct: 151 VLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQP-KRSAPKNESRRYERRRDGPPPD 209

Query: 186 RRT-RQAAGQSESASS 200
           RR  RQ A  S+S+S+
Sbjct: 210 RRKPRQEAAASDSSST 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172728|gb|AEL99067.1| putative plastid developmental protein, partial [Silene latifolia] gi|343172730|gb|AEL99068.1| putative plastid developmental protein, partial [Silene latifolia]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 129/167 (77%), Gaps = 26/167 (15%)

Query: 41  SRSILTVRAGATDSEYSSKRSSSN---EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQM 97
           +R  +++RA AT+ +YS+KRSSSN   E RETIMLPGCDYNHWLIVMEFPKDP+PTREQM
Sbjct: 4   ARRRVSIRASATN-DYSAKRSSSNNNGEQRETIMLPGCDYNHWLIVMEFPKDPSPTREQM 62

Query: 98  IETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFK-------------- 143
           I+TYL+TLATVLGSMEEAKKNMYAFSTTTYTGFQCTV EETSEKFK              
Sbjct: 63  IDTYLDTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYI 122

Query: 144 --------GDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGP 182
                   GDKYVNGEIIPC YPTYQP KR   KY  +RYERRRDGP
Sbjct: 123 DVKNKDYGGDKYVNGEIIPCKYPTYQPKKRDPPKYAGRRYERRRDGP 169

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.735	0.633	0.618	1.5e-42
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.67	0.358	0.507	4.5e-27
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.88	0.721	0.385	6.1e-23
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.68	0.586	0.390	2.8e-20
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.765	0.387	0.327	3.7e-20
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.93	0.849	0.329	9.2e-20
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.56	0.489	0.432	3.6e-18
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.51	0.243	0.476	4.7e-18
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.36	0.375	0.410	6e-17
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.415	0.114	0.517	1.5e-15

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 94/152 (61%), Positives = 108/152 (71%)

Query:    25 GLRVG---SPTLRLPSRAHSRS-ILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHW 80
             G+RVG   +P LR  S A SR  +  V+A   D          NE RETIMLPGCDYNHW
Sbjct:    31 GIRVGDSWTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHW 90

Query:    81 LIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSE 140
             LIVMEFPKDPAP+R+QMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCT+ EETSE
Sbjct:    91 LIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSE 150

Query:   141 KFKGDKYVNGEIIPCTYPTYQPNKRKESKYVS 172
             KFKG   V   ++P +Y   +       KY++
Sbjct:   151 KFKGLPGVLW-VLPDSYIDVKNKDYGGDKYIN 181

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 72/142 (50%), Positives = 83/142 (58%)

Query:    35 LPSRAHSRSILTVRAGATDXXXXXXXXXXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTR 94
             LP+     S     A   D            P E I+  GCDYNHWLI MEFP DP PTR
Sbjct:    50 LPAAGFRSSAAASAAARGDDYGRRDVDEKISPDE-ILFEGCDYNHWLITMEFP-DPKPTR 107

Query:    95 EQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIP 154
             E+MIETYL TLA V+GS EEAKK MYAFSTTTY GFQ  ++EE SEKF+G   V   I+P
Sbjct:   108 EEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEKFRGLPGVVF-ILP 166

Query:   155 CTYPTYQPNKRKESKYVSKRYE 176
              +Y  Y   K    +Y   +YE
Sbjct:   167 DSY-LYPETK----EYGGDKYE 183

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 76/197 (38%), Positives = 102/197 (51%)

Query:     8 SILASKPLLSSRPQLTLGL--RVGSPTLRL-PSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             S  +S P LSSR +  + L  +V S    L P    +R   T  +G +            
Sbjct:    23 SYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYISTRP-KTSGSGYSPLNDPSPNWSNR 81

Query:    65 EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFST 124
              P+ETI+L GCDY HWLIVMEF  DP PT E+MI +Y+ TL +VLG  EEAKK +Y+  T
Sbjct:    82 PPKETILLDGCDYEHWLIVMEFT-DPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCT 140

Query:   125 TTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNK--------------RKESKY 170
             +TYTGF   +SEE S K K    V   ++P +Y    PNK              R + ++
Sbjct:   141 STYTGFGALISEELSCKVKALPGVLW-VLPDSYLDV-PNKDYGGDLYVEGKVIPRPQYRF 198

Query:   171 VSKRYERRRDGPPAERR 187
               +R+ R R  P  +RR
Sbjct:   199 TEQRHTRPRPRPRYDRR 215

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 55/141 (39%), Positives = 72/141 (51%)

Query:     6 APSILASKPLLSSRPQLTLGLRVGS-PTLRLPSRAHSRSILTVRAGATDXXXXXXXXXXN 64
             +PS L S  L+S R   T+   VG  P L   +   +R  +    G+             
Sbjct:    26 SPSPLPSH-LISRRFSPTIFHAVGYIPALTRFTTIRTR--MDRSGGSYSPLKSGSNFSDR 82

Query:    65 EPRETIML-PGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFS 123
              P E   L PGCDY HWLIVME P      ++QMI+ Y+ TLA ++GS EEA+K +Y  S
Sbjct:    83 PPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVS 142

Query:   124 TTTYTGFQCTVSEETSEKFKG 144
                Y GF C + EETS K +G
Sbjct:   143 CERYFGFGCEIDEETSNKLEG 163

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
 Identities = 53/162 (32%), Positives = 85/162 (52%)

Query:     1 MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXX 60
             ++ L+  S  +S PL  S P  +L L    P +   S      +++V+  +T        
Sbjct:    18 LSFLFTRSFASSAPLAKS-PASSL-LSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLN 75

Query:    61 X-----XXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEA 115
                       P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA
Sbjct:    76 DPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEA 134

Query:   116 KKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTY 157
             +  +Y+ ST  Y  F   VSE+ S K K    V   ++P +Y
Sbjct:   135 RMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRW-VLPDSY 175

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 64/194 (32%), Positives = 92/194 (47%)

Query:     3 TLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDXXXXXXXXX 62
             T +    L S   L + P++   +  G   L   +R  S      R+G+T          
Sbjct:     8 TRHLTRALLSNVTLMAPPRIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGSNF 67

Query:    63 XNEPRETI--MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMY 120
              + P   +  + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA V+GS EEAKK +Y
Sbjct:    68 SDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIY 127

Query:   121 AFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIPCTY--PT---YQPNKRKESKYVSKRY 175
               S   Y GF C + EETS K +G   V   ++P +Y  P    Y        + V +  
Sbjct:   128 NVSCERYLGFGCEIDEETSTKLEGLPGVLF-VLPDSYVDPENKDYGAELFVNGEIVQRSP 186

Query:   176 ERRRDGPPAERRTR 189
             ER+R   P  +R +
Sbjct:   187 ERQRRVEPQPQRAQ 200

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 51/118 (43%), Positives = 70/118 (59%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             + PGCDY HWLIVM+ P     T++QMI+ Y+ TLA ++GS EEAKK +Y  S   Y GF
Sbjct:    87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146

Query:   131 QCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESK-YVSKRYERRRDGPPAERR 187
              C + EETS K +G   V   I+P +Y   Q NK   ++ +V+    +R   PP  +R
Sbjct:   147 GCEIDEETSNKLEGLPGVLF-ILPDSYVD-QENKDYGAELFVNGEIVQR---PPERQR 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 50/105 (47%), Positives = 66/105 (62%)

Query:    68 ETIMLPGCDYNHWLIVMEFPKDPAP-TREQMIETYLNTLATVLG-SMEEAKKNMYAFSTT 125
             +T++  GCDYNHWLI M+F K+  P + E+M+  Y  T A  LG S+EEAK+ MYA STT
Sbjct:    78 DTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACSTT 137

Query:   126 TYTGFQCTVSEETSEKFKGDKYVNGEIIPCTYPTYQPNKRKESKY 170
             TY GFQ  ++E+ SEKFK    V   I+P +Y   Q  +    KY
Sbjct:   138 TYQGFQAIMTEQESEKFKDLPGVVF-ILPDSYIDPQNKEYGGDKY 181

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 30/73 (41%), Positives = 49/73 (67%)

Query:    71 MLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 130
             ++ GCDY HWL++M+ P +  PTR  ++++++ TLA  LGS EEAK+++Y+ ST  Y  F
Sbjct:    48 LVEGCDYKHWLVLMK-PPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAF 106

Query:   131 QCTVSEETSEKFK 143
              C + E  + K +
Sbjct:   107 GCRIHEPLTYKIR 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 44/85 (51%), Positives = 55/85 (64%)

Query:    74 GCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLG-SMEEAKKNMYAFSTTTYTGFQC 132
             GCD+NHWLI M FPKD  P+RE+MI  +  T A  L  S+EEAKK +YA  TT+Y GFQ 
Sbjct:    79 GCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQA 138

Query:   133 TVSEETSEKFKGDKYVNGEIIPCTY 157
             T++    EKF+    V   IIP +Y
Sbjct:   139 TMTIGEVEKFRDLPGVQ-YIIPDSY 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       190   0.00091  110 3  11 23  0.37    33
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.16u 0.14s 16.30t   Elapsed:  00:00:01
  Total cpu time:  16.16u 0.14s 16.30t   Elapsed:  00:00:01
  Start:  Fri May 10 04:05:00 2013   End:  Fri May 10 04:05:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G11430	plastid developmental protein DAG, putative; plastid developmental protein DAG, putative; LOCATED IN- chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- plastid developmental protein DAG, putative (TAIR-AT3G06790.2); Has 147 Blast hits to 135 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (232 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G08740	elongation factor P (EF-P) family protein; elongation factor P (EF-P) family protein; FUNCTIONS [...] (236 aa)				•			•		0.896
	AT5G55220	trigger factor type chaperone family protein; trigger factor type chaperone family protein; FUN [...] (547 aa)				•			•		0.894
	CHL-CPN10	CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding; Encodes a chloroplast-localized chape [...] (139 aa)				•			•		0.883
	AT1G36390	co-chaperone grpE family protein; co-chaperone grpE family protein; FUNCTIONS IN- protein bindi [...] (279 aa)				•			•		0.875
	AT3G12930	unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN [...] (238 aa)				•					0.843
	AT5G58250	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (211 aa)				•					0.841
	AT3G18680	aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase famil [...] (339 aa)				•					0.841
	CP33	CP33; RNA binding; chloroplast RNA-binding protein (329 aa)				•					0.835
	emb2184	emb2184 (embryo defective 2184); structural constituent of ribosome; embryo defective 2184 (emb [...] (144 aa)				•			•		0.832
	EMB1241	EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein [...] (326 aa)				•			•		0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	95.39

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=95.39  E-value=0.022  Score=39.11  Aligned_cols=69  Identities=22%  Similarity=0.412  Sum_probs=42.6

Q ss_pred             eEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHH----HHhhc-cceeeecceeeeeeeeCHHHHHhhhCCCcccceEec
Q 029048           80 WLIVMEFPKDPAPTREQMIETYLNTLATVLGSME----EAKKN-MYAFSTTTYTGFQCTVSEETSEKFKGDKYVNGEIIP  154 (200)
Q Consensus        80 WLVvMd~P~~~~pSr~EmId~Yv~TLAkVLGSEE----EAKkk-IYsvSt~tyfGF~c~IdEE~S~KLkGd~~VnG~IvP  154 (200)
                      .+|+|+.+    .+.++.++...+-++..|.+..    ..+-+ +|.+.. .--||.+.+++++.++|+.+|.|. -|.|
T Consensus         2 YIV~~k~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~Gfs~~l~~~~i~~L~~~p~V~-~Ve~   75 (82)
T PF05922_consen    2 YIVVFKDD----ASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDN-AFNGFSAKLSEEEIEKLRKDPGVK-SVEP   75 (82)
T ss_dssp             EEEEE-TT----STHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESS-TSSEEEEEE-HHHHHHHHTSTTEE-EEEE
T ss_pred             EEEEECCC----CCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEee-eEEEEEEEeCHHHHHHHHcCCCeE-EEEe
Confidence            47888866    3334456666666665554321    12223 676766 789999999999999999999888 4444

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	94.49
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	88.21
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	80.03

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=94.49  E-value=0.035  Score=41.46  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhhc-cceeeecceeeeeeeeCHHHHHhhhCCCccc
Q 029048           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKN-MYAFSTTTYTGFQCTVSEETSEKFKGDKYVN  149 (200)
Q Consensus        78 ~HWLVvMd~P~~~~pSr~EmId~Yv~TLAkVLGSEEEAKkk-IYsvSt~tyfGF~c~IdEE~S~KLkGd~~Vn  149 (200)
                      +.|+|+|..-    ++ .+.++.+.+.|+.+|++ +.+.-. +|.+. ..--||.+.++|++.++|+.+|.|.
T Consensus        38 ~~YIV~lk~~----~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~~P~V~  103 (114)
T 2w2n_P           38 GTYVVVLKEE----TH-LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVD  103 (114)
T ss_dssp             EEEEEEECTT----CC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHTSTTEE
T ss_pred             CcEEEEECCC----CC-HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCcc
Confidence            4699999742    22 34566788888888754 223333 56664 4678999999999999999998775

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=88.21  E-value=1.4  Score=29.78  Aligned_cols=57  Identities=16%  Similarity=0.164  Sum_probs=38.0

Q ss_pred             ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHhhccceeeecceeeeeeeeCHHHHHhhhCCCccc
Q 029048           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVN  149 (200)
Q Consensus        78 ~HWLVvMd~P~~~~pSr~EmId~Yv~TLAkVLGSEEEAKkkIYsvSt~tyfGF~c~IdEE~S~KLkGd~~Vn  149 (200)
                      +.|+|+|...   .+ .++.    .+.|++.+|.     +-+|.+..  --||.+.+++++.++|+.+|.|.
T Consensus         9 ~~YIV~~k~~---~~-~~~~----~~~~~~~~g~-----~i~~~y~~--~~Gfaa~l~~~~~~~L~~~p~V~   65 (80)
T 3cnq_P            9 KKYIVGFKQG---FK-SCAK----KEDVISEKGG-----KLQKCFKY--VDAASATLNEKAVEELKKDPSVA   65 (80)
T ss_dssp             CEEEEEECTT---CC-SHHH----HHHHHHTTTC-----EEEEECSS--SSEEEEECCHHHHHHHHTCTTEE
T ss_pred             CCEEEEECCC---CC-hHHH----HHHHHHHcCC-----cceEEEcc--cEEEEEEcCHHHHHHHHhCCCcc
Confidence            5699999742   22 2222    2344444441     22455553  78999999999999999998876

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=80.03  E-value=6.5  Score=29.81  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             ceeEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHh-----hccceeeecceeeeeeeeCHHHHHhhhCCCccc
Q 029048           78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAK-----KNMYAFSTTTYTGFQCTVSEETSEKFKGDKYVN  149 (200)
Q Consensus        78 ~HWLVvMd~P~~~~pSr~EmId~Yv~TLAkVLGSEEEAK-----kkIYsvSt~tyfGF~c~IdEE~S~KLkGd~~Vn  149 (200)
                      +.|+|+|...    .+.+ -++..++.|..++     ++     +-+|.+. ..--||.+.+++++.++|+.+|.|.
T Consensus        48 ~~YIV~~K~~----~~~~-~~~~~~~~l~~~~-----~~r~~g~~i~~~Y~-~~~~GFaa~l~~~~~~~L~~~p~V~  113 (124)
T 2qtw_A           48 GTYVVVLKEE----THLS-QSERTARRLQAQA-----ARRGYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVD  113 (124)
T ss_dssp             EEEEEEECTT----CCHH-HHHHHHHHHHHHH-----HHTTCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEE
T ss_pred             CCEEEEECCC----CCHH-HHHHHHHHHHHHH-----hhcccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCCc
Confidence            3589999742    2333 3555555544321     11     2245555 4678999999999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00