Citrus Sinensis ID: 029049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSKDEEDEGLEEEDEEEHGETLR
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccEEEEccccccEEEcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdggggynprtveeVFGDFKGRRAGMIKALTTEVEEFyhqcdpekenlclygfpseqwevnlpaeevppelpepalginfardgmqekdWLSLVAVHSDAWLLSVAFYFGarfgfdksDRKRLFNMINELPTIFEVVTGttkkqakekssvsnhsssksksnskrgsetQAKFSKAvqskdeedegleeedeeehgetlr
Flexible Loop (DISEMBL)
mdggggynprtveevfgdfkgRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTifevvtgttkkqakekssvsnhsssksksnskrgsetqakfskavqskdeedegleeedeeehgetlr
Low Complexity Region (SEG)
MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWevnlpaeevppelpepalGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAkekssvsnhsssksksnskRGSETQAKFSKAVQSKdeedegleeedeeehgeTLR
Disordered region (IsUnstruct)
***********VEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLP***********ALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTG*************************************************************
Disordered Region (DISOPRED)
************EEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEV****************************************************************
Disordered Region (DISEMBL)
MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTG*************************************************************
Disordered Region (DISPRO)
********PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGT************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSKDEEDEGLEEEDEEEHGETLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q5XEM9	260	PHD finger protein ALFIN-	yes	no	0.89	0.684	0.730	7e-66
Q9M2B4	250	PHD finger protein ALFIN-	no	no	0.97	0.776	0.721	5e-64
Q7XUW3	256	PHD finger protein ALFIN-	yes	no	0.875	0.683	0.641	3e-63
A2XTW9	256	PHD finger protein ALFIN-	N/A	no	0.875	0.683	0.636	3e-62
Q2R837	254	PHD finger protein ALFIN-	no	no	0.865	0.681	0.737	5e-62
B8BJV8	254	PHD finger protein ALFIN-	N/A	no	0.865	0.681	0.737	5e-62
Q40359	257	PHD finger protein Alfin1	N/A	no	0.82	0.638	0.757	9e-61
Q60DW3	258	PHD finger protein ALFIN-	no	no	0.805	0.624	0.760	1e-60
A2Y4R8	258	PHD finger protein ALFIN-	N/A	no	0.805	0.624	0.760	1e-60
Q8LA16	252	PHD finger protein ALFIN-	no	no	0.83	0.658	0.760	1e-60

>sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 162/182 (89%), Gaps = 4/182 (2%)

Query: 1   MDGGGG-YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWE 59
           M+GG   Y+PRTVEEVF DFKGRRAG+I+ALTT+VE+F+ QCDPEK+NLCLYGFP+E WE
Sbjct: 1   MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWE 60

Query: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 119
           VNLPAEEVPPELPEPALGINFARDGMQE++WLSLVAVHSDAWLLSV+FYFG+RFGFD++D
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRAD 120

Query: 120 RKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK-RGSETQAKFSKAVQ 178
           RKRLF+MINE+PT++EVVTG  +KQ KE  S +N + ++SKSNSK RG E+++  SK + 
Sbjct: 121 RKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLESKS--SKTIH 178

Query: 179 SK 180
           +K
Sbjct: 179 AK 180

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1

 Score =  243 bits (621), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 172/201 (85%), Gaps = 7/201 (3%)

Query: 1   MDGGGG-YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWE 59
           M+GG   YNPRTVEEVF DFKGRR  ++KALTT+V+EFY QCDPEKENLCLYG P+E+WE
Sbjct: 1   MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWE 60

Query: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 119
           VNLPAEEVPPELPEPALGINFARDG+ EK+WLSLVA+HSDAWLLSV+FYFG+RF F K +
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEE 120

Query: 120 RKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK-RGSETQAKFSKAVQ 178
           RKRLFNMIN++PTIFEVVTG  K  AK+KSS +N + +KSKSNSK R SE   K SK  Q
Sbjct: 121 RKRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSE--GKSSKTKQ 176

Query: 179 SKDEEDEGLEEEDEEEHGETL 199
            K+E++E ++E+DE++HGETL
Sbjct: 177 PKEEDEE-IDEDDEDDHGETL 196

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. japonica GN=Os04g0444900 PE=2 SV=2

 Score =  241 bits (614), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 144/187 (77%), Gaps = 12/187 (6%)

Query: 1   MDGGGG-----YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPS 55
           MDGG G     ++ R+ E+VF DF GRR+G++KALT EVE+FY QCDPEKENLCLYG P+
Sbjct: 1   MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60

Query: 56  EQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGF 115
             W V LPA+EVPPELPEPALGINFARDGMQEKDWLSL+AVHSD+WLLSVAFYFGARFGF
Sbjct: 61  GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120

Query: 116 DKSDRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK--RGSETQAKF 173
           DK  R+RLF M + LPT+FEVV+G    Q+K     + + SSK+KS SK  +   + +K 
Sbjct: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSK-----TANGSSKNKSGSKPPKRPNSDSKP 175

Query: 174 SKAVQSK 180
            K VQ+K
Sbjct: 176 QKQVQAK 182

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XTW9|ALFL4_ORYSI PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. indica GN=OsI_16049 PE=3 SV=1

 Score =  237 bits (605), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/187 (63%), Positives = 143/187 (76%), Gaps = 12/187 (6%)

Query: 1   MDGGGG-----YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPS 55
           MDGG G     ++ R+ E+VF DF GRR+G++KALT EVE+FY QCDPEKENLCLYG P+
Sbjct: 1   MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60

Query: 56  EQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGF 115
             W V LPA+EVPPELPEPALG NFARDGMQEKDWLSL+AVHSD+WLLSVAFYFGARFGF
Sbjct: 61  GTWAVTLPADEVPPELPEPALGHNFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120

Query: 116 DKSDRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK--RGSETQAKF 173
           DK  R+RLF M + LPT+FEVV+G    Q+K     + + SSK+KS SK  +   + +K 
Sbjct: 121 DKKARERLFMMTSSLPTVFEVVSGGVNTQSK-----TANGSSKNKSGSKPPKRPNSDSKP 175

Query: 174 SKAVQSK 180
            K VQ+K
Sbjct: 176 QKQVQAK 182

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2R837|ALFL8_ORYSJ PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 146/175 (83%), Gaps = 2/175 (1%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGGG +  RT E+VF DF+ RRAGMIKALTT+VE+FY QCDPEKENLCLYG P+E WEV
Sbjct: 1   MDGGGAH--RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 58

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGM EKDWLSLVAVHSD WLL+VAFYFGARFGFDK  R
Sbjct: 59  NLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESR 118

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSK 175
           KRLF+MIN LPTI+EVVTGT KKQ+KEK+  ++  S+KS +   R  E  ++  K
Sbjct: 119 KRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPK 173

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BJV8|ALFL8_ORYSI PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 146/175 (83%), Gaps = 2/175 (1%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGGG +  RT E+VF DF+ RRAGMIKALTT+VE+FY QCDPEKENLCLYG P+E WEV
Sbjct: 1   MDGGGAH--RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEV 58

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGM EKDWLSLVAVHSD WLL+VAFYFGARFGFDK  R
Sbjct: 59  NLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESR 118

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSK 175
           KRLF+MIN LPTI+EVVTGT KKQ+KEK+  ++  S+KS +   R  E  ++  K
Sbjct: 119 KRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPK 173

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1

 Score =  233 bits (593), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 144/165 (87%), Gaps = 1/165 (0%)

Query: 9   PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVP 68
           PRTVEEVF D+KGRRAG+IKALTT+VE+FY   DPEKENLCLYGFP+E WEVNLP EEVP
Sbjct: 10  PRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWEVNLPVEEVP 69

Query: 69  PELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMIN 128
           PELPEPALGINFARDGMQEKDWLSLVAVHSD+WLL+VAFYFGARFGF K+DRKRLF MIN
Sbjct: 70  PELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMIN 129

Query: 129 ELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK-RGSETQAK 172
           +LPT+FE+ TGT K+   + ++ +N S+SK KS+ K R SE+Q K
Sbjct: 130 DLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTK 174

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes (By similarity). Transcriptional regulator that binds specifically to DNA sequences 5'-GNGGTG-3' or 5'-GTGGNG-3', including promoter elements of the salt-inducible PRP2 gene. Plays a role in salinity tolerance.

Medicago sativa (taxid: 3879)

>sp|Q60DW3|ALFL5_ORYSJ PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. japonica GN=Os05g0419100 PE=2 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 137/163 (84%), Gaps = 2/163 (1%)

Query: 1   MDGGGG--YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQW 58
           MDGG G  Y  RT EEVF DF+GRRAGMIKALTT+VE+FY  CDPEKENLCLYG+P+E W
Sbjct: 1   MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60

Query: 59  EVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKS 118
           EV LPAEEVPPE+PEPALGINFARDGM EKDWL+LVAVHSD+WLL+VAFYF ARFGFDK 
Sbjct: 61  EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120

Query: 119 DRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKS 161
            R+RLFNMIN LPTIFEVVTG  KKQ KEK+  S +  +K  S
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSS 163

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y4R8|ALFL5_ORYSI PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. indica GN=OsI_19996 PE=3 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 137/163 (84%), Gaps = 2/163 (1%)

Query: 1   MDGGGG--YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQW 58
           MDGG G  Y  RT EEVF DF+GRRAGMIKALTT+VE+FY  CDPEKENLCLYG+P+E W
Sbjct: 1   MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDVEKFYQLCDPEKENLCLYGYPNETW 60

Query: 59  EVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKS 118
           EV LPAEEVPPE+PEPALGINFARDGM EKDWL+LVAVHSD+WLL+VAFYF ARFGFDK 
Sbjct: 61  EVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKE 120

Query: 119 DRKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKS 161
            R+RLFNMIN LPTIFEVVTG  KKQ KEK+  S +  +K  S
Sbjct: 121 ARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSS 163

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LA16|ALFL7_ARATH PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 145/167 (86%), Gaps = 1/167 (0%)

Query: 9   PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVP 68
           PRTVEEVF DF+GRRAG+IKAL+T+V++FYHQCDPEKENLCLYG P+E WEVNLP EEVP
Sbjct: 9   PRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNLPVEEVP 68

Query: 69  PELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMIN 128
           PELPEPALGINFARDGMQEKDW+SLVAVHSD+WL+SVAFYFGARFGF K++RKRLF MIN
Sbjct: 69  PELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMIN 128

Query: 129 ELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSK 175
           +LPTIFEVVTG   KQ+K++S+  N S SKS     R SE+  K SK
Sbjct: 129 DLPTIFEVVTGNA-KQSKDQSANHNSSRSKSSGGKPRHSESHTKASK 174

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
343887303	253	PHD finger protein [Citrus unshiu]	0.995	0.786	0.989	1e-111
224142915	253	predicted protein [Populus trichocarpa]	0.995	0.786	0.894	3e-85
255550121	251	DNA binding protein, putative [Ricinus c	0.985	0.784	0.889	1e-84
224088776	253	predicted protein [Populus trichocarpa]	0.9	0.711	0.894	3e-83
302398547	258	ALF domain class transcription factor [M	0.905	0.701	0.895	1e-81
359484453	252	PREDICTED: PHD finger protein ALFIN-LIKE	0.985	0.781	0.87	4e-76
116790051	254	unknown [Picea sitchensis]	0.88	0.692	0.780	4e-76
351725633	254	PHD4 [Glycine max] gi|115394654|gb|ABI97	0.965	0.759	0.86	5e-76
225429632	253	PREDICTED: PHD finger protein ALFIN-LIKE	0.9	0.711	0.9	9e-75
449452919	254	PREDICTED: PHD finger protein ALFIN-LIKE	0.905	0.712	0.900	3e-73

>gi|343887303|dbj|BAK61849.1| PHD finger protein [Citrus unshiu]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/199 (98%), Positives = 198/199 (99%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MD GGGYNPRTVEEVFGDFKGRRAGM+KALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDAGGGYNPRTVEEVFGDFKGRRAGMVKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK
Sbjct: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180

Query: 181 DEEDEGLEEEDEEEHGETL 199
           DEEDEGLEEEDEEEHGETL
Sbjct: 181 DEEDEGLEEEDEEEHGETL 199

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142915|ref|XP_002324777.1| predicted protein [Populus trichocarpa] gi|222866211|gb|EEF03342.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 178/199 (89%), Positives = 192/199 (96%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMIKALTT+VEEFY QCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGASYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFG+RFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLF+MIN+LPTIFEVVTGT KKQ KEKSSVSNHSS+K+KSNSKRGSE+Q K+SKA+Q+K
Sbjct: 121 KRLFSMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKTKSNSKRGSESQGKYSKAMQAK 180

Query: 181 DEEDEGLEEEDEEEHGETL 199
           DE+DEGL+EEDEE+HGETL
Sbjct: 181 DEDDEGLDEEDEEDHGETL 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550121|ref|XP_002516111.1| DNA binding protein, putative [Ricinus communis] gi|223544597|gb|EEF46113.1| DNA binding protein, putative [Ricinus communis]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 189/199 (94%), Gaps = 2/199 (1%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMI+ALTT+VEEFY QCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGASYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL+VAFYFGARFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMIN+LPTIFEVVTGT KKQ KEKSSVSNHSS+K+KSNSKRGSE+Q KFSK +QSK
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKAKSNSKRGSESQGKFSKVMQSK 180

Query: 181 DEEDEGLEEEDEEEHGETL 199
           DE+DE  EEE++EEHGETL
Sbjct: 181 DEDDE--EEEEDEEHGETL 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088776|ref|XP_002308535.1| predicted protein [Populus trichocarpa] gi|222854511|gb|EEE92058.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/180 (89%), Positives = 172/180 (95%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMIKALTT+VEEFY QCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGASYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSV+FYFG+RFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVSFYFGSRFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMIN+LPT+FEVVTGT KKQ KEKSSVSNHSS+K+KSNSKRGSE+Q KFSK +Q+K
Sbjct: 121 KRLFNMINDLPTVFEVVTGTAKKQVKEKSSVSNHSSNKTKSNSKRGSESQGKFSKVMQAK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398547|gb|ADL36568.1| ALF domain class transcription factor [Malus x domestica]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/181 (89%), Positives = 170/181 (93%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMIKALTTEVE+F+ QCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTEVEDFFQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL+VAFYFGARFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMINELPTIFEVVTGT KKQ KEKSS SNH S++SKSNSKRGSE Q + SKA+QSK
Sbjct: 121 KRLFNMINELPTIFEVVTGTAKKQVKEKSSNSNHGSNRSKSNSKRGSEPQPRHSKALQSK 180

Query: 181 D 181
           D
Sbjct: 181 D 181

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484453|ref|XP_003633111.1| PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|297738599|emb|CBI27844.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 174/200 (87%), Positives = 184/200 (92%), Gaps = 3/200 (1%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMIKALTT+VEEFY QCDPEKENLCLYGFP+E WEV
Sbjct: 1   MDGGPQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNELWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL+VAFYFGARFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK-RGSETQAKFSKAVQS 179
           KRLFNMIN+LPTIFEVVTG  KKQ KEKSSVSNHSS+KSKSNSK RGSE+ AK+ K  Q 
Sbjct: 121 KRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSNSKVRGSES-AKYLKGGQP 179

Query: 180 KDEEDEGLEEEDEEEHGETL 199
           KDEE EGL+E DEEEHG+TL
Sbjct: 180 KDEE-EGLDEVDEEEHGDTL 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790051|gb|ABK25484.1| unknown [Picea sitchensis]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/178 (78%), Positives = 157/178 (88%), Gaps = 2/178 (1%)

Query: 1   MDG-GGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWE 59
           M+G  G YNPRTVEEVF DFK RR G+IKALTT+VEEFY QCDP+KENLCLYGFP+E WE
Sbjct: 1   MEGVSGSYNPRTVEEVFKDFKMRRNGLIKALTTDVEEFYQQCDPDKENLCLYGFPNESWE 60

Query: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 119
           VNLPA+EVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFD+++
Sbjct: 61  VNLPADEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRNE 120

Query: 120 RKRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSK-RGSETQAKFSKA 176
           R+RLF+MINELPTIFE VTG  K+  KEKS+V+N+S SK+K + K R SE+Q K SK 
Sbjct: 121 RRRLFHMINELPTIFECVTGIGKRPTKEKSAVTNNSGSKNKQSGKMRPSESQMKMSKT 178

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725633|ref|NP_001237867.1| PHD4 [Glycine max] gi|115394654|gb|ABI97243.1| PHD4 [Glycine max]

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 186/200 (93%), Gaps = 7/200 (3%)

Query: 5   GGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPA 64
            GYNPRTVEEVF DFKGRRA +IKALTT+VEEFY QCDPEKENLCLYGFPSEQWEVNLPA
Sbjct: 3   AGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPA 62

Query: 65  EEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLF 124
           EEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL+VAFYFGARFGFD++DRKRLF
Sbjct: 63  EEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDEADRKRLF 122

Query: 125 NMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSKDEED 184
           NMIN+LPTIFEVVTG  KKQ KEKSSVSNHSS+KSKSNSKRGSE+  K++KA+QSKDE+D
Sbjct: 123 NMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSTKSKSNSKRGSES--KYTKAMQSKDEDD 180

Query: 185 EG-----LEEEDEEEHGETL 199
           EG     LE+EDEEEHG+TL
Sbjct: 181 EGGVGLGLEDEDEEEHGDTL 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429632|ref|XP_002280895.1| PREDICTED: PHD finger protein ALFIN-LIKE 5 [Vitis vinifera] gi|296081695|emb|CBI20700.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 162/180 (90%), Positives = 172/180 (95%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAGMIKALTT+VEEFY QCDP+KENLCLYGFPSEQWEV
Sbjct: 1   MDGGPPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPDKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLL+VAFYFGARFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMIN+LPTIFEVVTGT KKQ KEKSSVSNHSS+KSKSNSKRGSE+Q K+SK +Q+K
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKRGSESQGKYSKPLQAK 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452919|ref|XP_004144206.1| PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 1 [Cucumis sativus] gi|449518229|ref|XP_004166145.1| PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 1 [Cucumis sativus]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/181 (90%), Positives = 170/181 (93%)

Query: 1   MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEV 60
           MDGG  YNPRTVEEVF DFKGRRAG+IKALTT+VEEFY QCDPEKENLCLYGFPSEQWEV
Sbjct: 1   MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
           NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSD WLLSVAFYFGARFGFDK+DR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDR 120

Query: 121 KRLFNMINELPTIFEVVTGTTKKQAKEKSSVSNHSSSKSKSNSKRGSETQAKFSKAVQSK 180
           KRLFNMIN+LPTIFEVVTGT KKQ K+KSSVSNHSS+KSKSNSKR SE Q K +KAVQSK
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKTTKAVQSK 180

Query: 181 D 181
           D
Sbjct: 181 D 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2179709	255	AL4 "AT5G26210" [Arabidopsis t	0.875	0.686	0.657	1.2e-58
TAIR|locus:2149867	260	AL5 "AT5G20510" [Arabidopsis t	0.89	0.684	0.582	5.6e-52
TAIR|locus:2012577	252	AL7 "AT1G14510" [Arabidopsis t	0.83	0.658	0.616	5.1e-51
TAIR|locus:2099321	250	AL3 "AT3G42790" [Arabidopsis t	0.71	0.568	0.671	5.8e-50
UNIPROTKB|Q40359	257	ALFIN-1 "PHD finger protein Al	0.82	0.638	0.612	3.2e-49
TAIR|locus:2056281	256	AL6 "AT2G02470" [Arabidopsis t	0.83	0.648	0.598	3.7e-48
TAIR|locus:2074663	246	AL2 "AT3G11200" [Arabidopsis t	0.65	0.528	0.621	4e-42
TAIR|locus:2169707	241	AL1 "AT5G05610" [Arabidopsis t	0.65	0.539	0.606	5.3e-40

TAIR|locus:2179709 AL4 "AT5G26210" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/175 (65%), Positives = 127/175 (72%)

Query:     1 MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXX 60
             M+ GG YNPRTVEEVF DFKGRRAGMIKALTT+V+EF+  CDPEKENLCLYG P+E W  
Sbjct:     1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEV 60

Query:    61 XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDR 120
                             GINFARDGM EKDWLSLVAVHSDAWLL+VAF+FGARFGFDK+DR
Sbjct:    61 NLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADR 120

Query:   121 KRLFNMINELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXXXRGSETQAKFSK 175
             KRLFNM+N+LPTIFEVV GT KKQ                    RGSE++AKFSK
Sbjct:   121 KRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSK 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2149867 AL5 "AT5G20510" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 106/182 (58%), Positives = 129/182 (70%)

Query:     1 MDGGGG-YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWX 59
             M+GG   Y+PRTVEEVF DFKGRRAG+I+ALTT+VE+F+ QCDPEK+NLCLYGFP+E W 
Sbjct:     1 MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWE 60

Query:    60 XXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 119
                              GINFARDGMQE++WLSLVAVHSDAWLLSV+FYFG+RFGFD++D
Sbjct:    61 VNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRAD 120

Query:   120 RKRLFNMINELPTIFEVVTGTTKKQAXXX-XXXXXXXXXXXXXXXXRGSETQAKFSKAVQ 178
             RKRLF+MINE+PT++EVVTG  +KQ                     RG E+  K SK + 
Sbjct:   121 RKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLES--KSSKTIH 178

Query:   179 SK 180
             +K
Sbjct:   179 AK 180

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2012577 AL7 "AT1G14510" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 103/167 (61%), Positives = 118/167 (70%)

Query:     9 PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXX 68
             PRTVEEVF DF+GRRAG+IKAL+T+V++FYHQCDPEKENLCLYG P+E W          
Sbjct:     9 PRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNLPVEEVP 68

Query:    69 XXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMIN 128
                     GINFARDGMQEKDW+SLVAVHSD+WL+SVAFYFGARFGF K++RKRLF MIN
Sbjct:    69 PELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMIN 128

Query:   129 ELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXXXRGSETQAKFSK 175
             +LPTIFEVVTG  K Q+                   R SE+  K SK
Sbjct:   129 DLPTIFEVVTGNAK-QSKDQSANHNSSRSKSSGGKPRHSESHTKASK 174

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

TAIR|locus:2099321 AL3 "AT3G42790" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 96/143 (67%), Positives = 111/143 (77%)

Query:     1 MDGGGG-YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWX 59
             M+GG   YNPRTVEEVF DFKGRR  ++KALTT+V+EFY QCDPEKENLCLYG P+E+W 
Sbjct:     1 MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWE 60

Query:    60 XXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 119
                              GINFARDG+ EK+WLSLVA+HSDAWLLSV+FYFG+RF F K +
Sbjct:    61 VNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEE 120

Query:   120 RKRLFNMINELPTIFEVVTGTTK 142
             RKRLFNMIN++PTIFEVVTG  K
Sbjct:   121 RKRLFNMINDVPTIFEVVTGMAK 143

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|Q40359 ALFIN-1 "PHD finger protein Alfin1" [Medicago sativa (taxid:3879)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 101/165 (61%), Positives = 114/165 (69%)

Query:     9 PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXX 68
             PRTVEEVF D+KGRRAG+IKALTT+VE+FY   DPEKENLCLYGFP+E W          
Sbjct:    10 PRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWEVNLPVEEVP 69

Query:    69 XXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMIN 128
                     GINFARDGMQEKDWLSLVAVHSD+WLL+VAFYFGARFGF K+DRKRLF MIN
Sbjct:    70 PELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMIN 129

Query:   129 ELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXX-XRGSETQAK 172
             +LPT+FE+ TGT K+                      R SE+Q K
Sbjct:   130 DLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTK 174

GO:0003677 "DNA binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0071472 "cellular response to salt stress" evidence=IDA

TAIR|locus:2056281 AL6 "AT2G02470" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 100/167 (59%), Positives = 115/167 (68%)

Query:     9 PRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXX 68
             PRTVEEVF DF+GRRAG+IKALT ++ +FY  CDPEKENLCLYG P+E W          
Sbjct:     9 PRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVEEVP 68

Query:    69 XXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMIN 128
                     GINFARDGMQEKDW+SLVAVHSD+WLLSVAFYFGARFGF K++RKRLF MIN
Sbjct:    69 PELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMIN 128

Query:   129 ELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXXXRGSETQAKFSK 175
             ELPTIFEVV+G  K Q+                   R SE+ +K +K
Sbjct:   129 ELPTIFEVVSGNAK-QSKDLSVNNNNSKSKPSGVKSRQSESLSKVAK 174

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2074663 AL2 "AT3G11200" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 82/132 (62%), Positives = 101/132 (76%)

Query:     8 NPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXX 67
             NPRTVEE+F D+  RRA +++ALT +V++FY QCDPEKENLCLYG P+E W         
Sbjct:     9 NPRTVEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWEVNLPAEEV 68

Query:    68 XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMI 127
                      GINFARDGMQ KDWLSLVAVHSD WLLSV+FYFGAR   ++++RKRLF++I
Sbjct:    69 PPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARL--NRNERKRLFSLI 126

Query:   128 NELPTIFEVVTG 139
             N+LPT+F+VVTG
Sbjct:   127 NDLPTLFDVVTG 138

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2169707 AL1 "AT5G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 80/132 (60%), Positives = 98/132 (74%)

Query:     8 NPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXX 67
             NPRTVEE+F DF GRR+G ++AL+ +V++FY  CDPE ENLCLYG P+  W         
Sbjct:     7 NPRTVEEIFKDFSGRRSGFLRALSVDVDKFYSLCDPEMENLCLYGHPNGTWEVNLPAEEV 66

Query:    68 XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMI 127
                      GINFARDGMQ KDWLSLVAVHSD WLLSV+ YFGAR   ++++RKRLF++I
Sbjct:    67 PPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARL--NRNERKRLFSLI 124

Query:   128 NELPTIFEVVTG 139
             N+LPT+FEVVTG
Sbjct:   125 NDLPTLFEVVTG 136


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       146   0.00079  103 3  11 22  0.45    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.24u 0.13s 11.37t   Elapsed:  00:00:00
  Total cpu time:  11.24u 0.13s 11.37t   Elapsed:  00:00:00
  Start:  Fri May 10 04:06:32 2013   End:  Fri May 10 04:06:32 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40359	ALFIN_MEDSA	No assigned EC number	0.7575	0.82	0.6381	N/A	no
Q5XEM9	ALFL5_ARATH	No assigned EC number	0.7307	0.89	0.6846	yes	no
A2WXR5	ALFL6_ORYSI	No assigned EC number	0.7409	0.83	0.6102	N/A	no
A2Y4R8	ALFL5_ORYSI	No assigned EC number	0.7607	0.805	0.6240	N/A	no
B8BJV8	ALFL8_ORYSI	No assigned EC number	0.7371	0.865	0.6811	N/A	no
Q7XUW3	ALFL4_ORYSJ	No assigned EC number	0.6417	0.875	0.6835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0007007902 hypothetical protein (253 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam12165	137	pfam12165, DUF3594, Domain of unknown function (DU	4e-99

>gnl|CDD|221449 pfam12165, DUF3594, Domain of unknown function (DUF3594)

 Score =  282 bits (724), Expect = 4e-99
 Identities = 116/137 (84%), Positives = 130/137 (94%)

Query: 10  RTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPP 69
           RTVEE+F DFK RRAG++KALTT+VE+FY QCDPEKENLCLYG P+E WEVNLPAEEVPP
Sbjct: 1   RTVEEIFKDFKARRAGIVKALTTDVEDFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPP 60

Query: 70  ELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINE 129
           ELPEPALGINFARDGMQEKDWLSLVAVHSD+WLLSVAFYFGARFGF+++DRKRLF+MIN+
Sbjct: 61  ELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFNRNDRKRLFSMIND 120

Query: 130 LPTIFEVVTGTTKKQAK 146
           LPT+FEVVTG  KKQ+K
Sbjct: 121 LPTVFEVVTGAAKKQSK 137

This presumed domain is functionally uncharacterized.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00628. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF12165	137	DUF3594: Domain of unknown function (DUF3594); Int	100.0
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	100.0

>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=4e-96  Score=590.13  Aligned_cols=137  Identities=84%  Similarity=1.432  Sum_probs=135.6

Q ss_pred             CCHHHHHhhhhhhhhHHHHHHhHHHHHhhhcCCcCCcceeeecCCCCceeeeCCCCCCCCCCCCCcCCccccCCCccccc
Q 029049           10 RTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKD   89 (200)
Q Consensus        10 rTvE~iF~Df~~RR~glirALT~Dve~Fy~~CDPekenLcLYG~p~~~WeV~lPaeevPpelPEPalGINfaRDgM~rkd   89 (200)
                      ||||+||+||++||+|||||||+||++||+||||+||||||||+|||+|||+||+||||||||||+||||||||||+|+|
T Consensus         1 rtve~if~df~~RR~g~v~ALT~dve~Fy~~CDP~kenLCLYG~p~~~WeV~lP~eevPpeLPEPaLGINfaRDgM~r~d   80 (137)
T PF12165_consen    1 RTVEEIFRDFSGRRAGIVRALTTDVEEFYQQCDPEKENLCLYGHPDGTWEVNLPAEEVPPELPEPALGINFARDGMQRKD   80 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccceEEecCCCCCeEEeCChHhCCCCCCCcccCcccccCCccHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcchHHHHHHHHhhhccCCChhhhHHHHHhhccCCceeeeeeCccccccc
Q 029049           90 WLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAK  146 (200)
Q Consensus        90 WLslVAvHSDsWLlsvAfy~gar~gF~~~~R~rLf~mIN~lpTv~Evv~g~~kkq~k  146 (200)
                      |||||||||||||||||||||||||||+++|+|||+|||+||||||||+|+++||+|
T Consensus        81 WLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~~~~q~k  137 (137)
T PF12165_consen   81 WLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGRAKKQSK  137 (137)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhccccccCC
Confidence            999999999999999999999999999999999999999999999999999999865

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=100.00  E-value=4.5e-35  Score=260.24  Aligned_cols=160  Identities=44%  Similarity=0.611  Sum_probs=146.1

Q ss_pred             CCCCCHHHHHhhhhhhhhHHHHHHhHHHHHhhhcCCc----CCcceeeecCCCCceeeeCCCCCCCCCCCCCcCCccccC
Q 029049            7 YNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDP----EKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFAR   82 (200)
Q Consensus         7 ~~prTvE~iF~Df~~RR~glirALT~Dve~Fy~~CDP----ekenLcLYG~p~~~WeV~lPaeevPpelPEPalGINfaR   82 (200)
                      +.+++|+++|.+|++||++++.|+++++..||.+|||    .++|+|+|+++++.|+|++|++++|+++++++.|||+++
T Consensus        35 ~~~~~~~~~~~~~k~~~~~~~~a~~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~  114 (345)
T KOG1632|consen   35 PIERPVPDVFRGRKGRRGGLLKALTQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ  114 (345)
T ss_pred             CCCCCCcccccccccccccccHhhhhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence            6789999999999999999999999999999999999    789999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhhcchHHHHHHHHhhhcc-----CCChhhhHHHHHhhccCCceeeeeeCcccc--cccccCCcCCCC
Q 029049           83 DGMQEKDWLSLVAVHSDAWLLSVAFYFGARF-----GFDKSDRKRLFNMINELPTIFEVVTGTTKK--QAKEKSSVSNHS  155 (200)
Q Consensus        83 DgM~rkdWLslVAvHSDsWLlsvAfy~gar~-----gF~~~~R~rLf~mIN~lpTv~Evv~g~~kk--q~kek~~~~~~~  155 (200)
                      |||+.+|||++|++|+++|+++++||||+++     ++.+.+|+|++.++|++|||+++++|.+..  +.|.++  .+++
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~--~~~~  192 (345)
T KOG1632|consen  115 DGMSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKS--SNDR  192 (345)
T ss_pred             hhhhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhcccccccccccccccc--cccc
Confidence            9999999999999999999999999999998     899999999999999999999999997754  344444  4466


Q ss_pred             CCCCCCCCCCCCC
Q 029049          156 SSKSKSNSKRGSE  168 (200)
Q Consensus       156 ~~k~ks~~kr~~~  168 (200)
                      +++++++.++..+
T Consensus       193 ~~~~~~~~~~~~~  205 (345)
T KOG1632|consen  193 GSKSKTRKKRNRE  205 (345)
T ss_pred             cceecccCccccc
Confidence            6777666664333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00