Citrus Sinensis ID: 029051

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MNSSSFSKATSLLQAHNVTNNHNPKTSLPEIKPKATQNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MNSSSFSKATSLLQAhnvtnnhnpktslpeikpkatqnpipsrrNFVTTLISTSLALVGlhgdgigsssgASVALAESwgtrsflkerffepglspeDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNmaefdyyvrtpkvYESYLYYEKALKNLDDIVAMFA
Flexible Loop (DISEMBL)
MNSSSFSKATSLLQAHNvtnnhnpktslpeikpkatqnpipsrRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERffepglspeDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTafstlpevrrrEYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Low Complexity Region (SEG)
MNSSSFSKATSLLQAHNVTNNHNPKTSLPEIKPKATQNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Disordered region (IsUnstruct)
********************************************NFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGL*****VARIK***EGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAM**
Disordered Region (DISOPRED)
*************QA***********************************ISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKT***************TANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Disordered Region (DISEMBL)
**********SLLQAHNVTNNHNPKTSLPEIKPKATQNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Disordered Region (DISPRO)
*************************TSLPEIKP******IPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSSSFSKATSLLQAHNVTNNHNPKTSLPEIKPKATQNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9XI73	190	PsbQ-like protein 1, chlo	yes	no	0.77	0.810	0.591	2e-52
Q41806	213	Oxygen-evolving enhancer	N/A	no	0.6	0.563	0.308	3e-12
Q9XFT3	224	Oxygen-evolving enhancer	no	no	0.58	0.517	0.293	2e-11
Q41932	230	Oxygen-evolving enhancer	no	no	0.58	0.504	0.293	4e-11
Q41048	217	Oxygen-evolving enhancer	N/A	no	0.58	0.534	0.293	4e-11
P12301	232	Oxygen-evolving enhancer	N/A	no	0.605	0.521	0.264	9e-10
Q0D5P8	217	Oxygen-evolving enhancer	no	no	0.58	0.534	0.267	2e-08
P83646	217	Oxygen-evolving enhancer	N/A	no	0.58	0.534	0.267	2e-08
O22591	231	Oxygen-evolving enhancer	N/A	no	0.565	0.489	0.271	1e-07
Q9SGH4	220	PsbQ-like protein 2, chlo	no	no	0.55	0.5	0.236	0.0003

>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1 PE=1 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 126/164 (76%), Gaps = 10/164 (6%)

Query: 37  QNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSP 96
           Q  I +RR  +T+LI+ ++         IG ++ +++A  E WGTRSF+KE++F PGLSP
Sbjct: 37  QQDIFTRRRTLTSLITFTV---------IGGATSSALA-QEKWGTRSFIKEKYFMPGLSP 86

Query: 97  EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV 156
           EDA ARIKQTAEG+  +REM+D M+WRYVIFYIRLKQAYLSQDL  A + LPE RR +YV
Sbjct: 87  EDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYV 146

Query: 157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
             AN+L++NM+E D+YVRTPKVYESYLYYEK LK++D++V   A
Sbjct: 147 QAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 81  TRSF---LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLS 137
           TR F   LKERF+   L P +AVAR+K +A+ + +L+ ++D+ AW YV   +RL+ +YL 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 138 QDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
            DLKT  ++ P+  ++        L   + + D+  +     E+  Y+      L D++A
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

Query: 198 MFA 200
              
Sbjct: 211 KLG 213

Zea mays (taxid: 4577)

>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           LK+RF+   L P +A AR K++A+ + +++ ++DR AW YV   +R K +YL  DL T  
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           S+ P+  ++   +    L D +   DY  +     ++  YY + +  L++++A   
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           LK+RF+   LSP +A AR K +A+ + +++  +D+ AW YV   +RL+ +YL  DL T  
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           S  P+  ++   +    L   +   DY  R+    ++  YY + + +L++++A   
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           LKERF+   L P +A AR+K +A+ + +L+ ++D+ AW YV   +RL+ +YL  DLKT  
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           ++ P+  ++        L   + + D+  +     E+  Y+      L D++A   
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217

Zea mays (taxid: 4577)

>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1

 Score = 63.5 bits (153), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 63/121 (52%)

Query: 80  GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQD 139
           GT  + K+RF+   L P +A  R K +A  + ++++ +DR AW  +   +RL+ +YL  D
Sbjct: 112 GTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYD 171

Query: 140 LKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199
           LKT  S  P+  ++      + L  ++   D+  +     E+  YY + + N+++++A  
Sbjct: 172 LKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

Query: 200 A 200
            
Sbjct: 232 G 232

Spinacia oleracea (taxid: 3562)

>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 60/116 (51%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           L+ERF+   L P +A AR K++A+ + +L+ ++++  W +V   +RL+ +YL  DLKT  
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           ++ P+  ++   +    L   +   D+  +     E+  YY      L D++A   
Sbjct: 162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 60/116 (51%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           L+ERF+   L P +A AR K++A+ + +L+ ++++  W +V   +RL+ +YL  DLKT  
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           ++ P+  ++   +    L   +   D+  +     E+  YY      L D++A   
Sbjct: 162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217

Oryza sativa subsp. indica (taxid: 39946)

>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 85  LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
           LKERF+   LSP +A  R +++A+ + ++++ +D+      I  +RL+ +YL  DL T  
Sbjct: 115 LKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVI 174

Query: 145 STLPEVRRREYV-NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
           S+ P+ +++    ++A  L  ++   DY  +     ++  YY  A+  L+D+++
Sbjct: 175 SSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLS 228

Onobrychis viciifolia (taxid: 3882)

>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%)

Query: 77  ESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136
           E  GTR+F+K+  +   +  +  + R+K+ A  + ++ +++      YV  Y+RLK  +L
Sbjct: 97  EKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFL 156

Query: 137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYE 186
             D     S      ++   + AN L DN  + +   +T  + E+   Y+
Sbjct: 157 FYDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYK 206

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
225425642	188	PREDICTED: oxygen-evolving enhancer prot	0.93	0.989	0.641	1e-65
388500348	204	unknown [Lotus japonicus]	0.975	0.955	0.585	6e-60
356498351	192	PREDICTED: uncharacterized protein LOC10	0.955	0.994	0.583	2e-59
224108990	202	predicted protein [Populus trichocarpa]	0.96	0.950	0.602	2e-58
217075630	193	unknown [Medicago truncatula] gi|3885166	0.95	0.984	0.552	5e-57
357487151	261	Oxygen-evolving enhancer protein 3-2 [Me	0.945	0.724	0.56	1e-56
449432058	187	PREDICTED: psbQ-like protein 1, chloropl	0.72	0.770	0.695	1e-55
255562916	192	calcium ion binding protein, putative [R	0.855	0.890	0.575	7e-52
56744293	193	Putative oxygen evolving enhancer protei	0.94	0.974	0.507	8e-52
53749458	193	Putative oxygen evolving enhancer protei	0.94	0.974	0.502	5e-51

>gi|225425642|ref|XP_002272064.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Vitis vinifera] gi|296086349|emb|CBI31938.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 147/198 (74%), Gaps = 12/198 (6%)

Query: 4   SSFSKATSLLQAHNVTNNHNPKTSLPEIKPKATQNPIPS-RRNFVTTLISTSLALVGLHG 62
           SSF+  TSL  A   T  H    SLP  +   +    P  RR  V+TL++TSLAL     
Sbjct: 2   SSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLAL----- 56

Query: 63  DGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAW 122
                  G  +ALAE+WGTRSFLKERFFEPGLSPEDAVARI+QTAEG+HS+R M++ M+W
Sbjct: 57  ------HGTPLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSW 110

Query: 123 RYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESY 182
           RYVIFYIRLK AYLSQDLK A +TLPE RRR Y N AN+L+DNMAEFDYYVRTPKVYESY
Sbjct: 111 RYVIFYIRLKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESY 170

Query: 183 LYYEKALKNLDDIVAMFA 200
           LYYEK LK++DD+VAM A
Sbjct: 171 LYYEKTLKSIDDLVAMLA 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500348|gb|AFK38240.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 149/205 (72%), Gaps = 10/205 (4%)

Query: 4   SSFSKATSLLQAHNVTNNHNPKTS---LPEIKPKAT-----QNPIPSRRNFVTTLISTSL 55
           SSF+ AT+LL AH  T   N   S   LP I  +A       N   SRR  ++T ++TS 
Sbjct: 2   SSFTHATTLLHAHIKTKQRNTSKSTNPLPLINNQAPFSAEHNNDTTSRRKLISTFLTTST 61

Query: 56  ALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLRE 115
           A+  L   G+        ALAE WGTRSFLKE FFEPGLSPEDAV RIKQTAEG+HS+R+
Sbjct: 62  AV--LVAGGVYGGGVPPPALAEKWGTRSFLKEHFFEPGLSPEDAVERIKQTAEGLHSMRD 119

Query: 116 MVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRT 175
           M++ M+WRYV+FYIRLKQ+YL QDLK A +TLPE R++EYV TANDL+DNMAE D +VR+
Sbjct: 120 MLESMSWRYVMFYIRLKQSYLDQDLKNAITTLPENRKKEYVKTANDLVDNMAELDRHVRS 179

Query: 176 PKVYESYLYYEKALKNLDDIVAMFA 200
           PKVYESYLYYE+ LK++D++VA+ A
Sbjct: 180 PKVYESYLYYERLLKSIDELVAILA 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498351|ref|XP_003518016.1| PREDICTED: uncharacterized protein LOC100807480 [Glycine max]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 148/197 (75%), Gaps = 6/197 (3%)

Query: 4   SSFSKATSLLQAHNVTNNHNPKTSLPEIKPKATQNPIPSRRNFVTTLISTSLALVGLHGD 63
           SSF+ AT+LL AH  T +  P T+     P    N  P+RR  ++T ++TS A + +HG 
Sbjct: 2   SSFTHATTLLHAHIKTKHKKPSTTTTTTTP-LPHNHSPNRRKLISTFLATSTAALLVHG- 59

Query: 64  GIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWR 123
                +    ALA+SWGT SF+KE FFEPGLSPEDAVARIKQTAEG+HS+RE ++ M+WR
Sbjct: 60  ----VTSTPQALAQSWGTHSFIKEHFFEPGLSPEDAVARIKQTAEGLHSIREALETMSWR 115

Query: 124 YVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYL 183
           Y++FYIR+KQAYL QDL+TAF+TLPE RR+EYV TAN+L+ N  EFD ++RTPKVYESYL
Sbjct: 116 YIMFYIRIKQAYLDQDLRTAFTTLPESRRKEYVKTANELVSNFGEFDRHIRTPKVYESYL 175

Query: 184 YYEKALKNLDDIVAMFA 200
           YYEK LK++D +VA+ A
Sbjct: 176 YYEKTLKSIDQLVAILA 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108990|ref|XP_002315041.1| predicted protein [Populus trichocarpa] gi|222864081|gb|EEF01212.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 149/204 (73%), Gaps = 12/204 (5%)

Query: 4   SSFSKAT-SLLQAH-NVT---NNHNPKTSLPEIKPKATQNPIPS--RRNFVTTLISTSLA 56
           SSF+  T +LL A  N+T    NH PK S P IK  A+ +P+ S   R  +   +STSLA
Sbjct: 2   SSFTANTPTLLHAQKNITIKPRNHQPKRSAPIIK--ASISPLESVTNRRKIVAFLSTSLA 59

Query: 57  LVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREM 116
           L  LHG    +++    ALAE WGTRS L E FF+P LSPEDAVARI QTAEG+HS+R+M
Sbjct: 60  LGQLHG---TTTTAPPAALAEKWGTRSLLWEHFFQPDLSPEDAVARITQTAEGLHSMRDM 116

Query: 117 VDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTP 176
           ++ MAWRYV+FYIR KQAYLS+DLK AFSTLP  RR +YV  AN+L+DNM EFD YVRTP
Sbjct: 117 LESMAWRYVMFYIRQKQAYLSKDLKNAFSTLPPSRREDYVKKANELVDNMDEFDSYVRTP 176

Query: 177 KVYESYLYYEKALKNLDDIVAMFA 200
           +VYESYLYYEK LK++DDIVA+  
Sbjct: 177 RVYESYLYYEKTLKSIDDIVAILG 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075630|gb|ACJ86175.1| unknown [Medicago truncatula] gi|388516659|gb|AFK46391.1| unknown [Medicago truncatula]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 146/199 (73%), Gaps = 9/199 (4%)

Query: 4   SSFSKATSLLQAHNVTNNHNPKTSLPEIKPKAT--QNPIPSRRNFVTTLISTSLALVGLH 61
           SSF+ AT+LL AH  T + N   ++      +   +  + +RRN V+T ++TS+      
Sbjct: 2   SSFTHATTLLHAHIKTKHKNTSNNINNNVNNSLSSKQNVTNRRNLVSTFLATSMV----- 56

Query: 62  GDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMA 121
             G+   +   +ALA++WGTRSF+KE FF PGLSPEDAV RIKQTAEG+H+LREM++ ++
Sbjct: 57  --GVVHVTTTPLALAQNWGTRSFMKEHFFMPGLSPEDAVLRIKQTAEGLHNLREMLETLS 114

Query: 122 WRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYES 181
           WRYV+FYIRLKQ YL QDL+ A +TLPE RR+EYV TAN+L+DN+ E D YVRTPKVYES
Sbjct: 115 WRYVMFYIRLKQNYLEQDLRNAITTLPENRRKEYVKTANELVDNLTEMDRYVRTPKVYES 174

Query: 182 YLYYEKALKNLDDIVAMFA 200
           YLYYEK LK++D++VA  A
Sbjct: 175 YLYYEKTLKSIDELVAQLA 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487151|ref|XP_003613863.1| Oxygen-evolving enhancer protein 3-2 [Medicago truncatula] gi|355515198|gb|AES96821.1| Oxygen-evolving enhancer protein 3-2 [Medicago truncatula]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 11/200 (5%)

Query: 4   SSFSKATSLLQAHNVTNNHNPKTSLPEIKPKAT---QNPIPSRRNFVTTLISTSLALVGL 60
           SSF+ AT+LL AH  T + N   ++      +    QN + +RRN V+T ++TS+     
Sbjct: 70  SSFTHATTLLHAHIKTKHKNTSNNINNNVNNSLSSKQN-VTNRRNLVSTFLATSMV---- 124

Query: 61  HGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRM 120
              G+   +   +ALA++WGTRSF+KE FF PGLSPEDAV RIKQTAEG+H+LREM++ +
Sbjct: 125 ---GVVHVTTTPLALAQNWGTRSFMKEHFFMPGLSPEDAVLRIKQTAEGLHNLREMLETL 181

Query: 121 AWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYE 180
           +WRYV+FYIRLKQ YL QDL+ A +TLPE RR+EYV TAN+L+DN+ E D YVRTPKVYE
Sbjct: 182 SWRYVMFYIRLKQNYLEQDLRNAITTLPENRRKEYVKTANELVDNLTEMDRYVRTPKVYE 241

Query: 181 SYLYYEKALKNLDDIVAMFA 200
           SYLYYEK LK++D++VA  A
Sbjct: 242 SYLYYEKTLKSIDELVAQLA 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432058|ref|XP_004133817.1| PREDICTED: psbQ-like protein 1, chloroplastic-like [Cucumis sativus] gi|449477919|ref|XP_004155162.1| PREDICTED: psbQ-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 127/151 (84%), Gaps = 7/151 (4%)

Query: 51  ISTSLALV-GLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEG 109
           I+T+LALV GL        +   VALA+SWGT SF+KER+FEPGLS E+AVARIKQTAEG
Sbjct: 43  IATTLALVVGLQA------ATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEG 96

Query: 110 MHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEF 169
           +HS+REM++  +WRYVIFYIRLK AYLSQDLKTA +TLP+ RR ++V TAN+L+DNMAE 
Sbjct: 97  LHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAEL 156

Query: 170 DYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
           DYYVRTPKVYESYLYYEK LK++DD+VA+ A
Sbjct: 157 DYYVRTPKVYESYLYYEKTLKSIDDLVALLA 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562916|ref|XP_002522463.1| calcium ion binding protein, putative [Ricinus communis] gi|223538348|gb|EEF39955.1| calcium ion binding protein, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 134/186 (72%), Gaps = 15/186 (8%)

Query: 20  NNHNPKTSLPEIK----PKATQNPIPSRRN-FVTTLISTSLALVGLHGDGIGSSSGASVA 74
           + H+ K S+P +K    P+ T     SRR  F+TT ++TSLA V            +  A
Sbjct: 17  STHHFKHSIPTLKASVSPQETNVTSASRRKIFITTFLATSLAQV----------QQSPPA 66

Query: 75  LAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQA 134
           LAE+WG RSF+ ERFFEP LSPED+VARI+QTAEG+HS+R M++ M+WRYVIFYIRLKQ+
Sbjct: 67  LAENWGVRSFIWERFFEPDLSPEDSVARIRQTAEGLHSIRNMLETMSWRYVIFYIRLKQS 126

Query: 135 YLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDD 194
           YLS+DLK A STLP+ R  EYV  AN L++NMA+ D YVR+PKVYESYLYYEK LK +DD
Sbjct: 127 YLSKDLKIAMSTLPKGRWNEYVELANVLVENMAKLDQYVRSPKVYESYLYYEKTLKAIDD 186

Query: 195 IVAMFA 200
           +V   A
Sbjct: 187 VVTYLA 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56744293|gb|AAW28572.1| Putative oxygen evolving enhancer protein 3, identical [Solanum demissum]

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 141/201 (70%), Gaps = 13/201 (6%)

Query: 4   SSFSKATSLLQAH-NVTNNHNPKT-SLPEIKPKATQNP--IPSRRNFVTTLISTSLALVG 59
           ++F+  T+L      +T  H+ +  +LP+I+   + N      RR  + T ++T L L G
Sbjct: 2   TTFTNPTTLFHPKIKITKTHHTQCKTLPKIQSNLSTNEENFTCRRKLIATFLATPLTL-G 60

Query: 60  LHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDR 119
           L            +ALAE+WG RSFL+E FFEPGLSPEDAVARI+QTA+G+HS++EM++ 
Sbjct: 61  L--------PFTPLALAENWGVRSFLREHFFEPGLSPEDAVARIRQTADGLHSIKEMLET 112

Query: 120 MAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVY 179
            +WRYV+FYIRLK AYL QD+K A S +PE R+  Y+ TAN+L DNMAEFDYY+RTPKVY
Sbjct: 113 NSWRYVLFYIRLKSAYLKQDMKNALSRVPESRKESYIKTANELTDNMAEFDYYIRTPKVY 172

Query: 180 ESYLYYEKALKNLDDIVAMFA 200
           ES ++YEK LK++D++V + A
Sbjct: 173 ESRVFYEKTLKSIDELVGLLA 193

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53749458|gb|AAU90312.1| Putative oxygen evolving enhancer protein, identical [Solanum demissum]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 140/201 (69%), Gaps = 13/201 (6%)

Query: 4   SSFSKATSLLQAH-NVTNNHNPKT-SLPEIKPKATQNP--IPSRRNFVTTLISTSLALVG 59
           ++F+  T+L      +T  H+ +  +LP+I+   + N      RR  + T ++T L L G
Sbjct: 2   TTFTNPTTLFHPKITITKTHHTQCKTLPKIQSNLSTNEENFSCRRKLIATFLATPLTL-G 60

Query: 60  LHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDR 119
           L            +ALAE+WG RSFL+E FFEPGLSPEDAVARI+QTA+G+HS++EM++ 
Sbjct: 61  LQF--------TPLALAENWGVRSFLREHFFEPGLSPEDAVARIRQTADGLHSIKEMLET 112

Query: 120 MAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVY 179
            +WRYV+FYIRLK AYL QD+K A S +PE  +  Y+ TAN+L DNMAEFDYY+RTPKVY
Sbjct: 113 NSWRYVLFYIRLKSAYLKQDVKNALSRVPESLKESYIKTANELTDNMAEFDYYIRTPKVY 172

Query: 180 ESYLYYEKALKNLDDIVAMFA 200
           ES ++YEK LK++D++V + A
Sbjct: 173 ESRVFYEKTLKSIDELVGLLA 193

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2035775	190	PnsL2 "Photosynthetic NDH subc	0.77	0.810	0.591	9.8e-48
TAIR|locus:2127393	224	PSBQA "photosystem II subunit	0.755	0.674	0.269	4.4e-13
TAIR|locus:2115703	230	PSBQ-2 "photosystem II subunit	0.565	0.491	0.300	9.1e-13
UNIPROTKB|P83646	217	OsI_025465 "Oxygen-evolving en	0.565	0.520	0.274	1e-12
TAIR|locus:2096707	220	PnsL3 "Photosynthetic NDH subc	0.62	0.563	0.225	2.2e-05

TAIR|locus:2035775 PnsL2 "Photosynthetic NDH subcomplex L 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 97/164 (59%), Positives = 126/164 (76%)

Query:    37 QNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSP 96
             Q  I +RR  +T+LI+ ++         IG ++ +++A  E WGTRSF+KE++F PGLSP
Sbjct:    37 QQDIFTRRRTLTSLITFTV---------IGGATSSALA-QEKWGTRSFIKEKYFMPGLSP 86

Query:    97 EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV 156
             EDA ARIKQTAEG+  +REM+D M+WRYVIFYIRLKQAYLSQDL  A + LPE RR +YV
Sbjct:    87 EDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYV 146

Query:   157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
               AN+L++NM+E D+YVRTPKVYESYLYYEK LK++D++V   A
Sbjct:   147 QAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2127393 PSBQA "photosystem II subunit QA" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 42/156 (26%), Positives = 79/156 (50%)

Query:    45 NFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSF---LKERFFEPGLSPEDAVA 101
             +FV  +++ ++++    G     S G       S   R F   LK+RF+   L P +A A
Sbjct:    68 SFVQAVLADAISIKV--GPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAA 125

Query:   102 RIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTAND 161
             R K++A+ + +++ ++DR AW YV   +R K +YL  DL T  S+ P+  ++   +    
Sbjct:   126 RAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTK 185

Query:   162 LIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
             L D +   DY  +     ++  YY + +  L++++A
Sbjct:   186 LFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLA 221

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2115703 PSBQ-2 "photosystem II subunit Q-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/113 (30%), Positives = 63/113 (55%)

Query:    85 LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
             LK+RF+   LSP +A AR K +A+ + +++  +D+ AW YV   +RL+ +YL  DL T  
Sbjct:   115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query:   145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
             S  P+  ++   +    L   +   DY  R+    ++  YY + + +L++++A
Sbjct:   175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLA 227

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|P83646 OsI_025465 "Oxygen-evolving enhancer protein 3, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 145 (56.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 31/113 (27%), Positives = 60/113 (53%)

Query:    85 LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAF 144
             L+ERF+   L P +A AR K++A+ + +L+ ++++  W +V   +RL+ +YL  DLKT  
Sbjct:   102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query:   145 STLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
             ++ P+  ++   +    L   +   D+  +     E+  YY      L D++A
Sbjct:   162 NSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLA 214

GO:0009536 "plastid" evidence=IC

TAIR|locus:2096707 PnsL3 "Photosynthetic NDH subcomplex L 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 28/124 (22%), Positives = 57/124 (45%)

Query:    77 ESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136
             E  GTR+F+K+  +   +  +  + R+K+ A  + ++ +++      YV  Y+RLK  +L
Sbjct:    97 EKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFL 156

Query:   137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIV 196
               D     S      ++   + AN L DN  + +   +T  + E+   Y+     L +++
Sbjct:   157 FYDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVM 216

Query:   197 AMFA 200
                A
Sbjct:   217 TRMA 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       200   0.00087  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.26u 0.08s 21.34t   Elapsed:  00:00:02
  Total cpu time:  21.26u 0.08s 21.34t   Elapsed:  00:00:02
  Start:  Fri May 10 04:08:50 2013   End:  Fri May 10 04:08:52 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI73	PQL1_ARATH	No assigned EC number	0.5914	0.77	0.8105	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036935001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (188 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00030205001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (404 aa)				•			•		0.513
	GSVIVG00014308001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)				•			•		0.497
	GSVIVG00037228001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (221 aa)				•			•		0.461
	GSVIVG00016931001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (234 aa)				•			•		0.448
	GSVIVG00034349001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (191 aa)				•			•		0.447
	GSVIVG00007289001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (238 aa)				•			•		0.437
	GSVIVG00023667001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotg [...] (397 aa)				•			•		0.436
	GSVIVG00023298001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)				•			•		0.430
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)				•			•		0.427
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•			•		0.422

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
PLN02999	190	PLN02999, PLN02999, photosystem II oxygen-evolving	5e-61
pfam05757	203	pfam05757, PsbQ, Oxygen evolving enhancer protein	2e-52
PLN02729	220	PLN02729, PLN02729, PSII-Q subunit	7e-09
PLN02956	185	PLN02956, PLN02956, PSII-Q subunit	2e-07

>gnl|CDD|178577 PLN02999, PLN02999, photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

 Score =  188 bits (478), Expect = 5e-61
 Identities = 98/164 (59%), Positives = 127/164 (77%), Gaps = 10/164 (6%)

Query: 37  QNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSP 96
           Q  I +RR  +T+LI+ ++         IG ++ +++A  E WGTRSF+KE++F PGLSP
Sbjct: 37  QQDIFTRRRTLTSLITFTV---------IGGATSSALA-QEKWGTRSFIKEKYFMPGLSP 86

Query: 97  EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV 156
           EDA ARIKQTAEG+  +REM+D M+WRYVIFYIRLKQAYLSQDL  A + LPE RR +YV
Sbjct: 87  EDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYV 146

Query: 157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA 200
             AN+L++NM+E DYYVRTPKVYESYLYYEK LK++D++V + A
Sbjct: 147 QAANELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVVELLA 190

Length = 190

>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ)

 Score =  166 bits (423), Expect = 2e-52
 Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 17/184 (9%)

Query: 34  KATQNPIP---SRRNFVTTLISTSLALVGLH-----------GDGIGSSSGASVALAESW 79
           +A+  P     SRR  +  L++T LA                       SG       S 
Sbjct: 20  RASAEPAEPQTSRRAVLGGLVATGLAGGAFAQAAAAAAKPIKVGLPPPPSGGLPGTDNSD 79

Query: 80  GTRSF---LKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136
             R F   LKERF+   LSPE+A AR K++A+ +  L+E +D+ AW YV  Y+RLK  YL
Sbjct: 80  EARDFDLPLKERFYLQPLSPEEAAARAKESAKDILDLKEFIDKKAWPYVRNYLRLKAGYL 139

Query: 137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIV 196
             DL T  S  P+  ++   + AN L DN+   D+  RT  VYE+  YYEK   +LD+++
Sbjct: 140 RYDLNTLISAKPKEEKKSLKDLANKLFDNIENLDFAARTKDVYEAEKYYEKTKSSLDEVL 199

Query: 197 AMFA 200
           A  A
Sbjct: 200 AKLA 203

This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae. Length = 203

>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 28/110 (25%), Positives = 52/110 (47%)

Query: 77  ESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL 136
           E  GTRSFLK+  +   +  +  + R+K+ A  + +L +++      YV  Y+RLK  ++
Sbjct: 97  EKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFM 156

Query: 137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYE 186
             D     S  P   ++   + AN L DN  + +   +   + E+   Y+
Sbjct: 157 YYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYK 206

Length = 220

>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 8/177 (4%)

Query: 22  HNPKTSLPEIKPKATQNPIPSRRNFVTTL-ISTSLALVGLHGDGIGSSSGASVALAESWG 80
           H     +  +KP        SRR   +      +LA V     G+  +   +        
Sbjct: 14  HLSPAFICCLKPTFPSKGNTSRRPLRSISRRRGALAAVA----GVLLAQLEASFNVAIAF 69

Query: 81  TRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDL 140
                  R   P  + E+A + ++  AE +  ++ +++  +W+     +R   + L QDL
Sbjct: 70  GFDL---RLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDL 126

Query: 141 KTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
                  P   R +     +DL +++ + DY  R       + YYE  + +LDDI +
Sbjct: 127 YAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDETRVWEYYENIVASLDDIFS 183

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PLN02999	190	photosystem II oxygen-evolving enhancer 3 protein	100.0
PLN02729	220	PSII-Q subunit	100.0
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	100.0
PLN02956	185	PSII-Q subunit	100.0
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	99.97
PRK14140	191	heat shock protein GrpE; Provisional	82.58

>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

Probab=100.00  E-value=4.8e-68  Score=444.93  Aligned_cols=187  Identities=53%  Similarity=0.868  Sum_probs=178.8

Q ss_pred             CCCCCCCccchhhc--cccccCCCCCCCCccCCccC-CCCCchhHHHHHHHHHHHHHHhhhccCCCCCCCCCcccccccc
Q 029051            3 SSSFSKATSLLQAH--NVTNNHNPKTSLPEIKPKAT-QNPIPSRRNFVTTLISTSLALVGLHGDGIGSSSGASVALAESW   79 (200)
Q Consensus         3 ~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~-~~~~~~RR~~l~~l~at~~a~~~~~~~~i~~~~~~p~~l~~~~   79 (200)
                      ||||||+| ++|++  ++..||+.+.+.+++.+|.+ ++++++||.+|++|+||+++|++          ..|++++|+|
T Consensus         1 m~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~l~~~~~~~~----------~~~~~~~e~~   69 (190)
T PLN02999          1 MSSFTTTN-TPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGA----------TSSALAQEKW   69 (190)
T ss_pred             CCcccCCC-CCCcccccccccccccCcchhhhcCCCchhhhHHHHHHHHHHHHHHHHhhc----------cCcHHHHhhh
Confidence            89999866 99997  55678888889999999998 99999999999999999998776          5688999999


Q ss_pred             ccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHH
Q 029051           80 GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTA  159 (200)
Q Consensus        80 ~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La  159 (200)
                      |||||||||||+||+||+||++|||++|++|++||+|||+++|+|||+|||++++||+|||++||+++|+++|++|++|+
T Consensus        70 GtRsfLKerfy~p~lspeeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~La  149 (190)
T PLN02999         70 GTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAA  149 (190)
T ss_pred             hhHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051          160 NDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       160 ~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~  200 (200)
                      ++|||||++||||||+||++|+++||++||++|||||+.||
T Consensus       150 nkLFdnvt~LDyAAR~K~~~eae~yY~~Tv~slddVl~~l~  190 (190)
T PLN02999        150 NELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVVELLA  190 (190)
T ss_pred             HHHhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999986

>PLN02729 PSII-Q subunit

Probab=100.00  E-value=3.2e-64  Score=429.80  Aligned_cols=197  Identities=21%  Similarity=0.235  Sum_probs=176.7

Q ss_pred             CCCCCCCCccchhhccccccCCCC---CCCCccCCccC-CCCC--chhHHHHHHHHHHHHHHhhh-----ccC---CCCC
Q 029051            2 NSSSFSKATSLLQAHNVTNNHNPK---TSLPEIKPKAT-QNPI--PSRRNFVTTLISTSLALVGL-----HGD---GIGS   67 (200)
Q Consensus         2 ~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~-~~~~--~~RR~~l~~l~at~~a~~~~-----~~~---~i~~   67 (200)
                      |.++.|+ |.|.|+++...+++++   ..++.|+.... |++.  ++||++|| |+|+||+++++     +++   |+||
T Consensus         6 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~rr~~lg-l~a~~l~~~s~~~~~~A~~~~i~~~~   83 (220)
T PLN02729          6 NLNGLTE-TLPAIPKLRNLQRTRKRGKIIGFLCKKAENFQEDSFQTTRRLALG-LASIALIGNSGNGVSLAEDNGFWLDG   83 (220)
T ss_pred             ccccccc-ccccchhhhcchhhhhhhhhhhHhhhhhhhcccchhhhhHHHHHH-HHHHHHhcchhhhHHHhcccCceeCC
Confidence            6788888 8999999885555444   44888888887 4443  69999999 99999997754     322   9999


Q ss_pred             CCCCcccc----ccccccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHH
Q 029051           68 SSGASVAL----AESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTA  143 (200)
Q Consensus        68 ~~~~p~~l----~~~~~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tl  143 (200)
                      |+|||.-+    .|+||+|+|||||||+||++|+||++|||++|++|++||+|||+++|+|||+|||+|++||||||++|
T Consensus        84 P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq~~LRLKAsyL~yDL~tv  163 (220)
T PLN02729         84 PLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKL  163 (220)
T ss_pred             CCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            85555544    37899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051          144 FSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       144 isskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~  200 (200)
                      |+++|+++|++|++|+|+||++|++||||||+||++++++||++|+++|||||++++
T Consensus       164 IsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeVl~k~~  220 (220)
T PLN02729        164 ISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRMA  220 (220)
T ss_pred             hccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999985

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=9.8e-58  Score=388.70  Aligned_cols=176  Identities=36%  Similarity=0.583  Sum_probs=105.4

Q ss_pred             CCCCCccCCccC-CCCCchhHHHHHHHHHHHHHHhhhccC--------CCCCCCCCcccc---ccccccchh---hhhcc
Q 029051           25 KTSLPEIKPKAT-QNPIPSRRNFVTTLISTSLALVGLHGD--------GIGSSSGASVAL---AESWGTRSF---LKERF   89 (200)
Q Consensus        25 ~~~~~~~~~s~~-~~~~~~RR~~l~~l~at~~a~~~~~~~--------~i~~~~~~p~~l---~~~~~tr~~---lk~rf   89 (200)
                      ..+.++||++.+ ++..++||++||+|+|++++++++++.        +|++||||++++   .+.||+|+|   +|+||
T Consensus        12 ~r~~~~vra~~~~~~~~~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd~~l~lk~rf   91 (202)
T PF05757_consen   12 RRAGVVVRASQSPAQQQTSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARDFDLPLKERF   91 (202)
T ss_dssp             ---------------------------------------------S-EE---------------------------TT--
T ss_pred             ccccceeccccCcccccccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccccccchhhce
Confidence            345788999986 566689999999999999997764322        678877777654   599999999   99999


Q ss_pred             ccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhH
Q 029051           90 FEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEF  169 (200)
Q Consensus        90 ~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~L  169 (200)
                      |+|++||+||++|||++|++|+.|++|||+++|+|||+|||+|++||||||++||+++|+++||++++|+|+||++||+|
T Consensus        92 ~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~L  171 (202)
T PF05757_consen   92 YIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEEL  171 (202)
T ss_dssp             EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051          170 DYYVRTPKVYESYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       170 D~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~  200 (200)
                      |||+|+||.+++++||++|+++|||||++||
T Consensus       172 D~Aar~K~~~~a~~~Y~~t~~~Ldevla~la  202 (202)
T PF05757_consen  172 DYAARSKDVPEAEKYYADTVKALDEVLAKLA  202 (202)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHHHCCH-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

>PLN02956 PSII-Q subunit

Probab=100.00  E-value=7.3e-42  Score=287.59  Aligned_cols=121  Identities=24%  Similarity=0.413  Sum_probs=116.0

Q ss_pred             cccccccccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhh
Q 029051           73 VALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRR  152 (200)
Q Consensus        73 ~~l~~~~~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~K  152 (200)
                      +.-+..+|.|      ||+|+++||||++|||++|++|++||+||++++|+|||||||+|++||+|||++||+++|+++|
T Consensus        65 ~~~a~~f~~~------~~~p~~speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Dr  138 (185)
T PLN02956         65 VAIAFGFDLR------LTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDR  138 (185)
T ss_pred             hhhcccccee------ecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHh
Confidence            3445666776      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhh
Q 029051          153 REYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF  199 (200)
Q Consensus       153 k~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l  199 (200)
                      +++++|+++||++|++||||||.||.+++++||++|+++||+||++|
T Consensus       139 k~a~~La~~LFd~l~~LD~AAR~kd~~~a~k~Y~~tva~lD~Vl~~i  185 (185)
T PLN02956        139 PQLRRLYSDLFNSVTKLDYAARDKDETRVWEYYENIVASLDDIFSRI  185 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999986

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=99.97  E-value=5.4e-30  Score=208.59  Aligned_cols=103  Identities=16%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCC
Q 029051           97 EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTP  176 (200)
Q Consensus        97 ~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~K  176 (200)
                      ++-+.+|.+.+++|.+|+.||++++|++|||+||+++|+||+||++||+++|+++||++++|+++||+++++||+||+.|
T Consensus        39 ~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~k  118 (142)
T TIGR03042        39 QRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQ  118 (142)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhh
Q 029051          177 KVYESYLYYEKALKNLDDIVAMF  199 (200)
Q Consensus       177 n~~~a~~~Y~~tv~~LdevLa~l  199 (200)
                      |.+++++||++++++||++++.|
T Consensus       119 d~~~a~k~Y~~av~~~dafl~~~  141 (142)
T TIGR03042       119 DGPQAQKAYQKAAADFDAYLDLL  141 (142)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999865

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>PRK14140 heat shock protein GrpE; Provisional

Probab=82.58  E-value=25  Score=30.34  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=36.8

Q ss_pred             CChHhhHHHHHHHHHHHHhhHhHHHHhhCCChHH----HHHHHHHHHHHHHHHHHhhC
Q 029051          147 LPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYE----SYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       147 kPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~----a~~~Y~~tv~~LdevLa~l~  200 (200)
                      .....+-...++..+|+.-+|+|+.|....+...    ...-++-+.+.|..+|.+.|
T Consensus        78 ~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~k~G  135 (191)
T PRK14140         78 NEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALKKEG  135 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3444555777889999999999999987543222    22334556777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1nze_A	149	Crystal Structure Of Psbq Polypeptide Of Photosyste		2e-10
3bez_A	593	Crystal Structure Of Escherichia Coli Signal Peptid		7e-04

>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii From Higher Plants Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 80  GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQD 139
           GT  + K+RF+   L P +A  R K +A  + ++++ +DR AW  +   +RL+ +YL  D
Sbjct: 29  GTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYD 88
Query: 140 LKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199
           LKT  S  P+  ++      + L  ++   D+  +     E+  YY + + N+++++A  
Sbjct: 89  LKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148
Query: 200 A 200
Sbjct: 149 G 149

>pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 47  VTTLISTSLALVGLHGDGIGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVAR-IKQ 105
           V T +  SL  +G+H DG+ +S  A V++     TR+   E      LS E+   R I  
Sbjct: 412 VITTVENSLDSIGVHTDGVSTSPLADVSI-----TRALPPEAQLXXQLSIENGYKRFITL 466
Query: 106 TAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDN 165
            A+  HS  E +D++A  +V         +  QD K                 AN L+D+
Sbjct: 467 VADARHSTPEQIDKIAQGHV---------WTGQDAK-----------------ANGLVDS 500
Query: 166 MAEFD 170
           + +FD
Sbjct: 501 LGDFD 505

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	4e-42
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	7e-09
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Length = 149

 Score =  138 bits (348), Expect = 4e-42
 Identities = 34/136 (25%), Positives = 66/136 (48%)

Query: 65  IGSSSGASVALAESWGTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRY 124
            G   G   +     GT  + K+RF+   L P +A  R K +A  + ++++ +DR AW  
Sbjct: 14  SGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPS 73

Query: 125 VIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLY 184
           +   +RL+ +YL  DLKT  S  P+  ++      + L  ++   D+  +     E+  Y
Sbjct: 74  LQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKY 133

Query: 185 YEKALKNLDDIVAMFA 200
           Y + + N+++++A   
Sbjct: 134 YGQTVSNINEVLAKLG 149

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Length = 130

 Score = 51.3 bits (122), Expect = 7e-09
 Identities = 15/103 (14%), Positives = 33/103 (32%)

Query: 97  EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV 156
           +D +  I++ AE    L   V +  W+     +R     +  D++     L    +    
Sbjct: 24  QDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPT 83

Query: 157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199
                L D+  + D       V  +   + +A  +    +   
Sbjct: 84  ALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL 126

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Length = 133

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 92  PGLSPEDAVARIKQTAEGMHSLREM--------VDRMAWRYVIFYIRLKQAYLSQDLKTA 143
              SPE  +A+++     +   R+         +    W     YI      L +D+   
Sbjct: 15  TTYSPEK-IAQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGL 73

Query: 144 FSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMF 199
            S+L    + +    A ++  ++   D   +     ++ + Y++AL + D  + + 
Sbjct: 74  ASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLNLL 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 19/114 (16%)

Query: 97  EDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQA---------YLSQD---LKTAF 144
           +D    I    E  H +           + + +  KQ           L  +   L +  
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 145 STL---PEVRRREYVNTANDLIDNMAEF-DYYVRTPKVYESYLYYEKALKNLDD 194
            T    P +  R Y+   + L ++   F  Y V   + Y       +AL  L  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---LRQALLELRP 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	100.0
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	99.91
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	99.9
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	95.81

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=100.00  E-value=8.1e-50  Score=325.43  Aligned_cols=137  Identities=24%  Similarity=0.430  Sum_probs=122.0

Q ss_pred             CCCCCCCCccccc------cccccchhh-hhccccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhh
Q 029051           64 GIGSSSGASVALA------ESWGTRSFL-KERFFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYL  136 (200)
Q Consensus        64 ~i~~~~~~p~~l~------~~~~tr~~l-k~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~L  136 (200)
                      +|||||||+++|+      |++++++++ |||||+|++||+||++||+++|++|++|++||++++|+|||+|||+|+|||
T Consensus         6 ~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~L   85 (149)
T 1vyk_A            6 VVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYL   85 (149)
T ss_dssp             ECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHH
Confidence            7999999999994      999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051          137 SQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       137 r~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~  200 (200)
                      ||||++||+++|+++|+++++||++||++|++||+|||.||.+++++||++|+++||+||++||
T Consensus        86 r~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~  149 (149)
T 1vyk_A           86 RYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG  149 (149)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999997

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=99.91  E-value=7.8e-24  Score=169.25  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCC
Q 029051           98 DAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPK  177 (200)
Q Consensus        98 eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn  177 (200)
                      .=+.+|.+.+++|.+|+.+|++++|.+||++||++.|.||+||++|+++|++.+||++++|+++||++|++||.|++.+|
T Consensus        25 ~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n  104 (130)
T 3zsu_A           25 DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDS  104 (130)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34789999999999999999999999999999999999999999999996555666999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q 029051          178 VYESYLYYEKALKNLDDIVAMF  199 (200)
Q Consensus       178 ~~~a~~~Y~~tv~~LdevLa~l  199 (200)
                      ...+++.|++++++||.||+.|
T Consensus       105 ~~~a~k~Y~~a~adfdafl~li  126 (130)
T 3zsu_A          105 VTVAQEGFREAEADFKAYLNSL  126 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999875

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=99.90  E-value=1.6e-23  Score=168.04  Aligned_cols=101  Identities=18%  Similarity=0.298  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHH-hHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHhHHHHhhCCC
Q 029051           99 AVARIKQTAEGMHS-LREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAEFDYYVRTPK  177 (200)
Q Consensus        99 A~~RIk~~A~~L~~-lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aar~Kn  177 (200)
                      =+.+|.+.+++|.+ |+.+|++++|.+||++||++.|.||+||++|+++|++.+||++++|+++||++|++||.|++.+|
T Consensus        28 y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n  107 (133)
T 3ls0_A           28 YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRN  107 (133)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            47899999999999 99999999999999999999999999999999996544555999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q 029051          178 VYESYLYYEKALKNLDDIVAMF  199 (200)
Q Consensus       178 ~~~a~~~Y~~tv~~LdevLa~l  199 (200)
                      ...+++.|++++++||.||+.|
T Consensus       108 ~~~a~k~Y~~a~adfdafl~li  129 (133)
T 3ls0_A          108 GSQAKIQYQEALADFDSFLNLL  129 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=95.81  E-value=0.022  Score=51.93  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=89.6

Q ss_pred             ccchhhhhccccCCCChHHHHHHHHHHHHHHHHhHHHhhh---hcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHH
Q 029051           80 GTRSFLKERFFEPGLSPEDAVARIKQTAEGMHSLREMVDR---MAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYV  156 (200)
Q Consensus        80 ~tr~~lk~rf~~~~ls~~eA~~RIk~~A~~L~~lk~lId~---~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~  156 (200)
                      +-+.-||.-+=+...       .||+--+.|..+-++|.-   +.|.-+.++++.-+.-|..+=+.|+.+.|.++|.+..
T Consensus        34 ~~~a~lr~alp~~~~-------~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~  106 (369)
T 3rfy_A           34 DPEALLRYALPIDNK-------AIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGN  106 (369)
T ss_dssp             CHHHHHHHHSCCCCH-------HHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHH
T ss_pred             CHHHHHhhhcCCCCh-------hHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHH
Confidence            334446665544332       234444455566666754   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHhHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q 029051          157 NTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA  197 (200)
Q Consensus       157 ~La~kLF~~le~LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa  197 (200)
                      .|.++|=..|++|..++..||...+....++++..+.++=.
T Consensus       107 ~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~  147 (369)
T 3rfy_A          107 EMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEE  147 (369)
T ss_dssp             HHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999889988888877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1nzea_	112	a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,	1e-37

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  124 bits (313), Expect = 1e-37
 Identities = 28/109 (25%), Positives = 57/109 (52%)

Query: 89  FFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLP 148
           F+   L P +A  R K +A  + ++++ +DR AW  +   +RL+ +YL  DLKT  S  P
Sbjct: 1   FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKP 60

Query: 149 EVRRREYVNTANDLIDNMAEFDYYVRTPKVYESYLYYEKALKNLDDIVA 197
           +  ++      + L  ++   D+  +     E+  YY + + N+++++A
Sbjct: 61  KDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLA 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	100.0

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.5e-42  Score=266.89  Aligned_cols=112  Identities=25%  Similarity=0.486  Sum_probs=111.3

Q ss_pred             cccCCCChHHHHHHHHHHHHHHHHhHHHhhhhcHHHHHHHHhhhhhhhHHHHHHHhhcCChHhhHHHHHHHHHHHHhhHh
Q 029051           89 FFEPGLSPEDAVARIKQTAEGMHSLREMVDRMAWRYVIFYIRLKQAYLSQDLKTAFSTLPEVRRREYVNTANDLIDNMAE  168 (200)
Q Consensus        89 f~~~~ls~~eA~~RIk~~A~~L~~lk~lId~~sW~yvr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~  168 (200)
                      ||+|++||+||+.||++++++|.+|+++|++++|+|||+|||+++||||+||++||+++|+++||++++|+++||++|++
T Consensus         1 f~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~   80 (112)
T d1nzea_           1 FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN   80 (112)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHhhC
Q 029051          169 FDYYVRTPKVYESYLYYEKALKNLDDIVAMFA  200 (200)
Q Consensus       169 LD~Aar~Kn~~~a~~~Y~~tv~~LdevLa~l~  200 (200)
                      ||+|||.||.+++++||++|+++||+||++||
T Consensus        81 LD~Aar~kd~~~a~~~Y~~t~~~ld~~la~lg  112 (112)
T d1nzea_          81 LDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG  112 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999997